BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16819
(289 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1E17|A Chain A, Solution Structure Of The Dna Binding Domain Of The Human
Forkhead Transcription Factor Afx (Foxo4)
Length = 150
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/80 (65%), Positives = 62/80 (77%), Gaps = 8/80 (10%)
Query: 87 GLLNCPTAGGLALKKTATSRRNAWGSSSYADLISQAIQSSPEQRLTLSQIYDWMIQNVPY 146
G + P GG SRRNAWG+ SYA+LISQAI+S+PE+RLTL+QIY+WM++ VPY
Sbjct: 25 GAVTGPRKGG--------SRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPY 76
Query: 147 FKDKGDSNSSAGWKMRIRSN 166
FKDKGDSNSSAGWK IR N
Sbjct: 77 FKDKGDSNSSAGWKNSIRHN 96
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 59/74 (79%), Gaps = 8/74 (10%)
Query: 210 GLLNCPTAGGLALKKTATSRRNAWGSSSYADLISQAIQSSPEQRLTLSQIYDWMIQNVPY 269
G + P GG SRRNAWG+ SYA+LISQAI+S+PE+RLTL+QIY+WM++ VPY
Sbjct: 25 GAVTGPRKGG--------SRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPY 76
Query: 270 FKDKGDSNSSAGWK 283
FKDKGDSNSSAGWK
Sbjct: 77 FKDKGDSNSSAGWK 90
>pdb|3L2C|A Chain A, Crystal Structure Of The Dna Binding Domain Of Foxo4 Bound
To Dna
Length = 110
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/80 (65%), Positives = 62/80 (77%), Gaps = 8/80 (10%)
Query: 87 GLLNCPTAGGLALKKTATSRRNAWGSSSYADLISQAIQSSPEQRLTLSQIYDWMIQNVPY 146
G + P GG SRRNAWG+ SYA+LISQAI+S+PE+RLTL+QIY+WM++ VPY
Sbjct: 9 GAVTGPRKGG--------SRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPY 60
Query: 147 FKDKGDSNSSAGWKMRIRSN 166
FKDKGDSNSSAGWK IR N
Sbjct: 61 FKDKGDSNSSAGWKNSIRHN 80
Score = 103 bits (258), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 59/74 (79%), Gaps = 8/74 (10%)
Query: 210 GLLNCPTAGGLALKKTATSRRNAWGSSSYADLISQAIQSSPEQRLTLSQIYDWMIQNVPY 269
G + P GG SRRNAWG+ SYA+LISQAI+S+PE+RLTL+QIY+WM++ VPY
Sbjct: 9 GAVTGPRKGG--------SRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPY 60
Query: 270 FKDKGDSNSSAGWK 283
FKDKGDSNSSAGWK
Sbjct: 61 FKDKGDSNSSAGWK 74
>pdb|3CO6|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe1 Dna
Length = 100
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 49/66 (74%), Positives = 61/66 (92%)
Query: 101 KTATSRRNAWGSSSYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDKGDSNSSAGWK 160
K+++SRRNAWG+ SYADLI++AI+SS E+RLTLSQIY+WM+++VPYFKDKGDSNSSAGWK
Sbjct: 2 KSSSSRRNAWGNLSYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWK 61
Query: 161 MRIRSN 166
IR N
Sbjct: 62 NSIRHN 67
Score = 103 bits (258), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/60 (76%), Positives = 58/60 (96%)
Query: 224 KTATSRRNAWGSSSYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDKGDSNSSAGWK 283
K+++SRRNAWG+ SYADLI++AI+SS E+RLTLSQIY+WM+++VPYFKDKGDSNSSAGWK
Sbjct: 2 KSSSSRRNAWGNLSYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWK 61
>pdb|3CO7|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna
pdb|3CO7|F Chain F, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna
pdb|3COA|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Ire Dna
pdb|3COA|F Chain F, Crystal Structure Of Foxo1 Dbd Bound To Ire Dna
Length = 117
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 49/66 (74%), Positives = 61/66 (92%)
Query: 101 KTATSRRNAWGSSSYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDKGDSNSSAGWK 160
K+++SRRNAWG+ SYADLI++AI+SS E+RLTLSQIY+WM+++VPYFKDKGDSNSSAGWK
Sbjct: 2 KSSSSRRNAWGNLSYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWK 61
Query: 161 MRIRSN 166
IR N
Sbjct: 62 NSIRHN 67
Score = 103 bits (258), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 46/60 (76%), Positives = 58/60 (96%)
Query: 224 KTATSRRNAWGSSSYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDKGDSNSSAGWK 283
K+++SRRNAWG+ SYADLI++AI+SS E+RLTLSQIY+WM+++VPYFKDKGDSNSSAGWK
Sbjct: 2 KSSSSRRNAWGNLSYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWK 61
>pdb|2K86|A Chain A, Solution Structure Of Foxo3a Forkhead Domain
Length = 103
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 48/64 (75%), Positives = 59/64 (92%)
Query: 103 ATSRRNAWGSSSYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDKGDSNSSAGWKMR 162
++SRRNAWG+ SYADLI++AI+SSP++RLTLSQIY+WM++ VPYFKDKGDSNSSAGWK
Sbjct: 2 SSSRRNAWGNLSYADLITRAIESSPDKRLTLSQIYEWMVRCVPYFKDKGDSNSSAGWKNS 61
Query: 163 IRSN 166
IR N
Sbjct: 62 IRHN 65
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/58 (77%), Positives = 56/58 (96%)
Query: 226 ATSRRNAWGSSSYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDKGDSNSSAGWK 283
++SRRNAWG+ SYADLI++AI+SSP++RLTLSQIY+WM++ VPYFKDKGDSNSSAGWK
Sbjct: 2 SSSRRNAWGNLSYADLITRAIESSPDKRLTLSQIYEWMVRCVPYFKDKGDSNSSAGWK 59
>pdb|2UZK|A Chain A, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna
pdb|2UZK|C Chain C, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna
Length = 97
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 42/56 (75%), Positives = 51/56 (91%)
Query: 111 GSSSYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDKGDSNSSAGWKMRIRSN 166
G+ SYADLI++AI+SSP++RLTLSQIY+WM++ VPYFKDKGDSNSSAGWK IR N
Sbjct: 2 GNLSYADLITRAIESSPDKRLTLSQIYEWMVRCVPYFKDKGDSNSSAGWKNSIRHN 57
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 39/50 (78%), Positives = 48/50 (96%)
Query: 234 GSSSYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDKGDSNSSAGWK 283
G+ SYADLI++AI+SSP++RLTLSQIY+WM++ VPYFKDKGDSNSSAGWK
Sbjct: 2 GNLSYADLITRAIESSPDKRLTLSQIYEWMVRCVPYFKDKGDSNSSAGWK 51
>pdb|2KIU|A Chain A, Solution Structure And Backbone Dynamics Of The
Dna-Binding Domain Of Foxp1: Insight Into Its Domain
Swapping
Length = 87
Score = 50.4 bits (119), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 5/53 (9%)
Query: 114 SYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDKGDSNSSAGWKMRIRSN 166
+YA LI QAI SPE++LTL++IY+W + PYF+ ++A WK +R N
Sbjct: 8 TYASLIRQAILESPEKQLTLNEIYNWFTRMFPYFR-----RNAATWKNAVRHN 55
Score = 47.0 bits (110), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 5/47 (10%)
Query: 237 SYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDKGDSNSSAGWK 283
+YA LI QAI SPE++LTL++IY+W + PYF+ ++A WK
Sbjct: 8 TYASLIRQAILESPEKQLTLNEIYNWFTRMFPYFR-----RNAATWK 49
>pdb|2C6Y|A Chain A, Crystal Structure Of Interleukin Enhancer-Binding Factor 1
Bound To Dna
pdb|2C6Y|B Chain B, Crystal Structure Of Interleukin Enhancer-Binding Factor 1
Bound To Dna
Length = 111
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 5/53 (9%)
Query: 114 SYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDKGDSNSSAGWKMRIRSN 166
SYA LI QAI +P+++LTL+ IY + +N PY++ + GW+ IR N
Sbjct: 20 SYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYR-----TADKGWQNSIRHN 67
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Query: 237 SYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFK--DKGDSNS 278
SYA LI QAI +P+++LTL+ IY + +N PY++ DKG NS
Sbjct: 20 SYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNS 63
>pdb|1JXS|A Chain A, Solution Structure Of The Dna-Binding Domain Of
Interleukin Enhancer Binding Factor
Length = 98
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 5/53 (9%)
Query: 114 SYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDKGDSNSSAGWKMRIRSN 166
SYA LI QAI +P+++LTL+ IY + +N PY++ + GW+ IR N
Sbjct: 7 SYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYR-----TADKGWQNSIRHN 54
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Query: 237 SYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFK--DKGDSNS 278
SYA LI QAI +P+++LTL+ IY + +N PY++ DKG NS
Sbjct: 7 SYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNS 50
>pdb|2A07|F Chain F, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|G Chain G, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|H Chain H, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|I Chain I, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|J Chain J, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|K Chain K, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2AS5|F Chain F, Structure Of The Dna Binding Domains Of Nfat And Foxp2
Bound Specifically To Dna.
pdb|2AS5|G Chain G, Structure Of The Dna Binding Domains Of Nfat And Foxp2
Bound Specifically To Dna
Length = 93
Score = 44.3 bits (103), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
Query: 114 SYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDKGDSNSSAGWKMRIRSN 166
+YA LI QAI S +++LTL++IY W + YF+ ++A WK +R N
Sbjct: 7 TYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFR-----RNAATWKNAVRHN 54
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 5/47 (10%)
Query: 237 SYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDKGDSNSSAGWK 283
+YA LI QAI S +++LTL++IY W + YF+ ++A WK
Sbjct: 7 TYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFR-----RNAATWK 48
>pdb|1D5V|A Chain A, Solution Structure Of The Forkhead Domain Of The
Adipocyte- Transcription Factor Freac-11 (S12)
Length = 94
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 35/53 (66%), Gaps = 5/53 (9%)
Query: 114 SYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDKGDSNSSAGWKMRIRSN 166
SY LI+ AIQ++PE+++TL+ IY +++ P++++ + GW+ IR N
Sbjct: 8 SYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRE-----NKQGWQNSIRHN 55
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 32/47 (68%), Gaps = 5/47 (10%)
Query: 237 SYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDKGDSNSSAGWK 283
SY LI+ AIQ++PE+++TL+ IY +++ P++++ + GW+
Sbjct: 8 SYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRE-----NKQGWQ 49
>pdb|3G73|A Chain A, Structure Of The Foxm1 Dna Binding
pdb|3G73|B Chain B, Structure Of The Foxm1 Dna Binding
Length = 142
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 114 SYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDKGDSNSSAGWKMRIRSNTWPLPRP 173
SY +I AI S+ +R+TL IY W+ + PYFK GWK IR N L
Sbjct: 22 SYMAMIQFAINSTERKRMTLKDIYTWIEDHFPYFKHIAK----PGWKNSIRHN---LSLH 74
Query: 174 DNYVDEPS 181
D +V E S
Sbjct: 75 DMFVRETS 82
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 237 SYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDKGDSNSSAGWK 283
SY +I AI S+ +R+TL IY W+ + PYFK GWK
Sbjct: 22 SYMAMIQFAINSTERKRMTLKDIYTWIEDHFPYFKHIAK----PGWK 64
>pdb|2A3S|A Chain A, Solution Structure And Dynamics Of Dna-Binding Domain Of
Myocyte Nuclear Factor
pdb|2D2W|A Chain A, Solution Structure And Dynamics Of The Dna-Binding Domain
Of Myocyte Nuclear Factor
Length = 101
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 5/53 (9%)
Query: 114 SYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDKGDSNSSAGWKMRIRSN 166
SYA LI QAI S+ +++LTLS IY + ++ PY++ + GW+ IR N
Sbjct: 7 SYAQLIVQAISSAQDRQLTLSGIYAHITKHYPYYR-----TADKGWQNSIRHN 54
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Query: 237 SYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFK--DKGDSNS 278
SYA LI QAI S+ +++LTLS IY + ++ PY++ DKG NS
Sbjct: 7 SYAQLIVQAISSAQDRQLTLSGIYAHITKHYPYYRTADKGWQNS 50
>pdb|1VTN|C Chain C, Co-Crystal Structure Of The Hnf-3FORK HEAD DNA-Recognition
Motif Resembles Histone H5
Length = 102
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 114 SYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKD 149
SY LI+ AIQ +P + LTLS+IY W++ PY+++
Sbjct: 7 SYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRE 42
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 237 SYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKD 272
SY LI+ AIQ +P + LTLS+IY W++ PY+++
Sbjct: 7 SYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRE 42
>pdb|3QRF|F Chain F, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|G Chain G, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|H Chain H, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|I Chain I, Structure Of A Domain-Swapped Foxp3 Dimer
Length = 82
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 114 SYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDKGDSNSSAGWKMRIRSN 166
+YA LI AI +PE++ TL++IY W + +F+ N A WK IR N
Sbjct: 6 TYATLIRWAILEAPEKQRTLNEIYHWFTRMFAFFR-----NHPATWKNAIRHN 53
Score = 36.6 bits (83), Expect = 0.018, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 237 SYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDKGDSNSSAGWK 283
+YA LI AI +PE++ TL++IY W + +F+ N A WK
Sbjct: 6 TYATLIRWAILEAPEKQRTLNEIYHWFTRMFAFFR-----NHPATWK 47
>pdb|2HDC|A Chain A, Structure Of Transcription Factor GenesisDNA COMPLEX
Length = 97
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 114 SYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDKGDSNSSAGWKMRIRSNTWPLPRP 173
SY LI+ AI SP+++LTLS I +++ PY+++K W+ IR N L
Sbjct: 6 SYIALITMAILQSPQKKLTLSGICEFISNRFPYYREK-----FPAWQNSIRHN---LSLN 57
Query: 174 DNYVDEPSPP 183
D +V P P
Sbjct: 58 DCFVKIPREP 67
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 237 SYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDK 273
SY LI+ AI SP+++LTLS I +++ PY+++K
Sbjct: 6 SYIALITMAILQSPQKKLTLSGICEFISNRFPYYREK 42
>pdb|1KQ8|A Chain A, Solution Structure Of Winged Helix Protein Hfh-1
Length = 100
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 114 SYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDKGDSNSSAGWKMRIRSN 166
SY LI+ AI+ S RLTL++I ++++ P+F+ S GW+ +R N
Sbjct: 6 SYIALITMAIRDSAGGRLTLAEINEYLMGKFPFFR-----GSYTGWRNSVRHN 53
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 237 SYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDKGDSNSSAGWK 283
SY LI+ AI+ S RLTL++I ++++ P+F+ S GW+
Sbjct: 6 SYIALITMAIRDSAGGRLTLAEINEYLMGKFPFFR-----GSYTGWR 47
>pdb|2HFH|A Chain A, The Nmr Structures Of A Winged Helix Protein: Genesis, 20
Structures
Length = 109
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 114 SYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDKGDSNSSAGWKMRIRSNTWPLPRP 173
SY LI+ AI SP+++LTLS I +++ PY+++K W+ IR N L
Sbjct: 7 SYIALITMAILQSPQKKLTLSGICEFISNRFPYYREK-----FPAWQNSIRHN---LSLN 58
Query: 174 DNYVDEPSPP 183
D +V P P
Sbjct: 59 DCFVKIPREP 68
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 237 SYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDK 273
SY LI+ AI SP+++LTLS I +++ PY+++K
Sbjct: 7 SYIALITMAILQSPQKKLTLSGICEFISNRFPYYREK 43
>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|B Chain B, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|C Chain C, Structure Of Human Phosphorylase Kinase, Gamma 2
pdb|2Y7J|D Chain D, Structure Of Human Phosphorylase Kinase, Gamma 2
Length = 365
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 112 SSSYADLISQAIQSSPEQRLTLSQ 135
SS+ DLIS+ +Q PE RLT Q
Sbjct: 333 SSTVKDLISRLLQVDPEARLTAEQ 356
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 235 SSSYADLISQAIQSSPEQRLTLSQ 258
SS+ DLIS+ +Q PE RLT Q
Sbjct: 333 SSTVKDLISRLLQVDPEARLTAEQ 356
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,259,761
Number of Sequences: 62578
Number of extensions: 306211
Number of successful extensions: 701
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 661
Number of HSP's gapped (non-prelim): 40
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)