RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16819
(289 letters)
>gnl|CDD|238016 cd00059, FH, Forkhead (FH), also known as a "winged helix". FH is
named for the Drosophila fork head protein, a
transcription factor which promotes terminal rather than
segmental development. This family of transcription
factor domains, which bind to B-DNA as monomers, are
also found in the Hepatocyte nuclear factor (HNF)
proteins, which provide tissue-specific gene regulation.
The structure contains 2 flexible loops or "wings" in
the C-terminal region, hence the term winged helix.
Length = 78
Score = 75.3 bits (186), Expect = 1e-17
Identities = 30/53 (56%), Positives = 37/53 (69%), Gaps = 5/53 (9%)
Query: 114 SYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDKGDSNSSAGWKMRIRSN 166
SY+ LI+ AIQSSPE+RLTLS+IY W+ N PYF+D AGW+ IR N
Sbjct: 5 SYSALIAMAIQSSPEKRLTLSEIYKWISDNFPYFRDA-----PAGWQNSIRHN 52
Score = 71.0 bits (175), Expect = 5e-16
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 5/47 (10%)
Query: 237 SYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDKGDSNSSAGWK 283
SY+ LI+ AIQSSPE+RLTLS+IY W+ N PYF+D AGW+
Sbjct: 5 SYSALIAMAIQSSPEKRLTLSEIYKWISDNFPYFRDA-----PAGWQ 46
>gnl|CDD|214627 smart00339, FH, FORKHEAD. FORKHEAD, also known as a "winged
helix".
Length = 89
Score = 67.6 bits (166), Expect = 1e-14
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 5/53 (9%)
Query: 114 SYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDKGDSNSSAGWKMRIRSN 166
SY LI+ AI SSP++RLTLS+IY W+ N PY+++ GW+ IR N
Sbjct: 5 SYIALIAMAILSSPDKRLTLSEIYKWIEDNFPYYRENRA-----GWQNSIRHN 52
Score = 64.6 bits (158), Expect = 2e-13
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 5/47 (10%)
Query: 237 SYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDKGDSNSSAGWK 283
SY LI+ AI SSP++RLTLS+IY W+ N PY+++ GW+
Sbjct: 5 SYIALIAMAILSSPDKRLTLSEIYKWIEDNFPYYRENRA-----GWQ 46
>gnl|CDD|189470 pfam00250, Fork_head, Fork head domain.
Length = 96
Score = 62.3 bits (152), Expect = 1e-12
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
Query: 114 SYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDKGDSNSSAGWKMRIRSN 166
SY LI+ AIQ SPE+ LTLS+IY W++ PY++ GW+ IR N
Sbjct: 5 SYIALITMAIQQSPEKMLTLSEIYQWIMDLFPYYRQN-----KQGWQNSIRHN 52
Score = 57.7 bits (140), Expect = 5e-11
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 5/47 (10%)
Query: 237 SYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDKGDSNSSAGWK 283
SY LI+ AIQ SPE+ LTLS+IY W++ PY++ GW+
Sbjct: 5 SYIALITMAIQQSPEKMLTLSEIYQWIMDLFPYYRQN-----KQGWQ 46
>gnl|CDD|227358 COG5025, COG5025, Transcription factor of the Forkhead/HNF3 family
[Transcription].
Length = 610
Score = 45.6 bits (108), Expect = 2e-05
Identities = 39/170 (22%), Positives = 62/170 (36%), Gaps = 22/170 (12%)
Query: 111 GSSSYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDKGDSNSSAGWKMRIRSN---- 166
+ LI SS ++L P N S+G + R N
Sbjct: 223 DIIKSSALIRIPADSSSNLDVSLGHHISQ-----PSTHTPVLDNHSSGEENISRINNSSQ 277
Query: 167 -TWPLP--RPDNYVDEPSPPTSAKLEDFETLGGELSALLSESKCNGGLLNCPTAGGLALK 223
P P R + +P A +D + + +
Sbjct: 278 IDSPTPNYRMSSIDSSVNPSRLANNKD----------EGRKGSKSSPVPKDAAPPSTLSD 327
Query: 224 KTATSRRNAWGSSSYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDK 273
+A R + + SYA+ I+QAI SSP ++TLS+IY W+ N+PY++ K
Sbjct: 328 LSADVNRTSKPAFSYANSITQAILSSPSGKMTLSEIYSWISSNLPYYRHK 377
Score = 37.5 bits (87), Expect = 0.008
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 103 ATSRRNAWGSSSYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKDKGDSNSSAGWKMR 162
A R + + SYA+ I+QAI SSP ++TLS+IY W+ N+PY++ K W+
Sbjct: 330 ADVNRTSKPAFSYANSITQAILSSPSGKMTLSEIYSWISSNLPYYRHKPT-----AWQNS 384
Query: 163 IRSN 166
IR N
Sbjct: 385 IRHN 388
Score = 35.2 bits (81), Expect = 0.039
Identities = 32/163 (19%), Positives = 51/163 (31%), Gaps = 15/163 (9%)
Query: 114 SYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFK--DKGDSNS------SAGWKMRI-R 164
SYA AI +SP++ LTLS+IY W+ Y+ NS ++I
Sbjct: 90 SYATGRGLAILNSPDKPLTLSKIYTWIHNTFFYYAKVVSRWQNSIRHNLSLNDAFIKIEG 149
Query: 165 SNTWPLPRPDNYVDEPSPPTSAKLEDFETLGG-ELSALLSESKCNGGLLNCPTAGGLALK 223
N + + K GG ++ L S + T L+
Sbjct: 150 RNGAKVKGHFWSIGPGHETQFLKSGLRLDGGGKQMMFTLPSSTE-IKITYSSTHSMPLLE 208
Query: 224 KTAT----SRRNAWGSSSYADLISQAIQSSPEQRLTLSQIYDW 262
+ + R + LI SS ++L
Sbjct: 209 SNDSLNSNNERELLDIIKSSALIRIPADSSSNLDVSLGHHISQ 251
Score = 32.1 bits (73), Expect = 0.34
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 237 SYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYFK 271
SYA AI +SP++ LTLS+IY W+ Y+
Sbjct: 90 SYATGRGLAILNSPDKPLTLSKIYTWIHNTFFYYA 124
>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated
serine/threonine kinase-like proteins. Serine/Threonine
Kinases (STKs), Microtubule-associated serine/threonine
(MAST) kinase subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAST kinase subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The MAST kinase subfamily
includes MAST kinases, MAST-like (MASTL) kinases, and
fungal kinases with similarity to Saccharomyces
cerevisiae Rim15 and Schizosaccharomyces pombe cek1.
MAST kinases contain an N-terminal domain of unknown
function, a central catalytic domain, and a C-terminal
PDZ domain that mediates protein-protein interactions.
MASTL kinases carry only a catalytic domain which
contains a long insert relative to other kinases. The
fungal kinases in this subfamily harbor other domains in
addition to a central catalytic domain, which also
contains an insert relative to MAST kinases like MASTL.
Rim15 contains a C-terminal signal receiver (REC) domain
while cek1 contains an N-terminal PAS domain. MAST
kinases are cytoskeletal associated kinases of unknown
function that are also expressed at neuromuscular
junctions and postsynaptic densities. The fungal
proteins Rim15 and cek1 are involved in the regulation
of meiosis and mitosis, respectively.
Length = 265
Score = 29.9 bits (68), Expect = 1.3
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 117 DLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKD 149
DLIS+ + PE+RL I + I+N P+FK
Sbjct: 232 DLISKLLVPDPEKRLGAKSIEE--IKNHPFFKG 262
Score = 29.9 bits (68), Expect = 1.3
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 240 DLISQAIQSSPEQRLTLSQIYDWMIQNVPYFKD 272
DLIS+ + PE+RL I + I+N P+FK
Sbjct: 232 DLISKLLVPDPEKRLGAKSIEE--IKNHPFFKG 262
>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases.
Protein Kinases (PKs), STE family, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The STE family is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases (STKs), protein
tyrosine kinases (PTKs), RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). This family is composed of STKs, and
some dual-specificity PKs that phosphorylate both
threonine and tyrosine residues of target proteins. Most
members are kinases involved in mitogen-activated
protein kinase (MAPK) signaling cascades, acting as MAPK
kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK
kinase kinase kinases (MAP4Ks). The MAPK signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAPK, which is
phosphorylated and activated by a MAPKK, which itself is
phosphorylated and activated by a MAPKKK. Each MAPK
cascade is activated either by a small GTP-binding
protein or by an adaptor protein, which transmits the
signal either directly to a MAPKKK to start the triple
kinase core cascade or indirectly through a mediator
kinase, a MAP4K. Other STE family members include
p21-activated kinases (PAKs) and class III myosins,
among others. PAKs are Rho family GTPase-regulated
kinases that serve as important mediators in the
function of Cdc42 (cell division cycle 42) and Rac.
Class III myosins are motor proteins containing an
N-terminal kinase catalytic domain and a C-terminal
actin-binding domain, which can phosphorylate several
cytoskeletal proteins, conventional myosin regulatory
light chains, as well as autophosphorylate the
C-terminal motor domain. They play an important role in
maintaining the structural integrity of photoreceptor
cell microvilli.
Length = 253
Score = 29.5 bits (67), Expect = 1.8
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 98 ALKKTATS-----RRNAWGSSSYADLISQAIQSSPEQRLTLSQ 135
AL K AT+ R S + D + + +Q +PE+R T Q
Sbjct: 205 ALFKIATNGPPGLRNPEKWSDEFKDFLKKCLQKNPEKRPTAEQ 247
Score = 29.5 bits (67), Expect = 1.8
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 221 ALKKTATS-----RRNAWGSSSYADLISQAIQSSPEQRLTLSQ 258
AL K AT+ R S + D + + +Q +PE+R T Q
Sbjct: 205 ALFKIATNGPPGLRNPEKWSDEFKDFLKKCLQKNPEKRPTAEQ 247
>gnl|CDD|177507 PHA03004, PHA03004, putative membrane protein; Provisional.
Length = 270
Score = 28.9 bits (65), Expect = 2.5
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 44 TWPLPRPDNYVDEPSPPTSAKLEDFETLGGELSALLSESK 83
T P P + ++ P+ P D+ETL LSA+L +K
Sbjct: 190 TGPFPIGQSRINHPNLPRGRSPSDYETL-ANLSAILYLTK 228
Score = 28.9 bits (65), Expect = 2.5
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 167 TWPLPRPDNYVDEPSPPTSAKLEDFETLGGELSALLSESK 206
T P P + ++ P+ P D+ETL LSA+L +K
Sbjct: 190 TGPFPIGQSRINHPNLPRGRSPSDYETL-ANLSAILYLTK 228
>gnl|CDD|216444 pfam01342, SAND, SAND domain. The DNA binding activity of two
proteins has been mapped to the SAND domain. The
conserved KDWK motif is necessary for DNA binding, and
it appears to be important for dimerisation. This region
is also found in the putative transcription factor RegA
from the multicellular green alga Volvox cateri. This
region of RegA is known as the VARL domain.
Length = 81
Score = 27.3 bits (61), Expect = 2.7
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 147 FKDKGDSNSSAGWKMRIRSNTWPL 170
F+ +G ++ WK IR L
Sbjct: 48 FEIEGGKGTAKDWKRSIRCGGETL 71
>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases. Protein Kinases
(PKs), catalytic (c) domain. PKs catalyze the transfer
of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The PK family is part of a larger
superfamily that includes the catalytic domains of RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, phosphoinositide 3-kinase (PI3K), and
actin-fragmin kinase. PKs make up a large family of
serine/threonine kinases, protein tyrosine kinases
(PTKs), and dual-specificity PKs that phosphorylate both
serine/threonine and tyrosine residues of target
proteins. Majority of protein phosphorylation, about
95%, occurs on serine residues while only 1% occurs on
tyrosine residues. Protein phosphorylation is a
mechanism by which a wide variety of cellular proteins,
such as enzymes and membrane channels, are reversibly
regulated in response to certain stimuli. PKs often
function as components of signal transduction pathways
in which one kinase activates a second kinase, which in
turn, may act on other kinases; this sequential action
transmits a signal from the cell surface to target
proteins, which results in cellular responses. The PK
family is one of the largest known protein families with
more than 100 homologous yeast enzymes and 550 human
proteins. A fraction of PK family members are
pseudokinases that lack crucial residues for catalytic
activity. The mutiplicity of kinases allows for specific
regulation according to substrate, tissue distribution,
and cellular localization. PKs regulate many cellular
processes including proliferation, division,
differentiation, motility, survival, metabolism,
cell-cycle progression, cytoskeletal rearrangement,
immunity, and neuronal functions. Many kinases are
implicated in the development of various human diseases
including different types of cancer.
Length = 215
Score = 28.4 bits (64), Expect = 3.8
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 113 SSYADLISQAIQSSPEQRLTLSQIYD 138
DLI + +Q PE+R + +I +
Sbjct: 188 PELKDLIRKMLQKDPEKRPSAKEILE 213
Score = 28.4 bits (64), Expect = 3.8
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 236 SSYADLISQAIQSSPEQRLTLSQIYD 261
DLI + +Q PE+R + +I +
Sbjct: 188 PELKDLIRKMLQKDPEKRPSAKEILE 213
>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), AGC (Protein Kinases A, G and C) family,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The AGC family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and Phosphoinositide 3-Kinase (PI3K). Members of
this family include cAMP-dependent Protein Kinase (PKA),
cGMP-dependent Protein Kinase (PKG), Protein Kinase C
(PKC), Protein Kinase B (PKB), G protein-coupled
Receptor Kinase (GRK), Serum- and Glucocorticoid-induced
Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase
(p70S6K or S6K), among others. AGC kinases share an
activation mechanism based on the phosphorylation of up
to three sites: the activation loop (A-loop), the
hydrophobic motif (HM) and the turn motif.
Phosphorylation at the A-loop is required of most AGC
kinases, which results in a disorder-to-order transition
of the A-loop. The ordered conformation results in the
access of substrates and ATP to the active site. A
subset of AGC kinases with C-terminal extensions
containing the HM also requires phosphorylation at this
site. Phosphorylation at the HM allows the C-terminal
extension to form an ordered structure that packs into
the hydrophobic pocket of the catalytic domain, which
then reconfigures the kinase into an active bi-lobed
state. In addition, growth factor-activated AGC kinases
such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require
phosphorylation at the turn motif (also called tail or
zipper site), located N-terminal to the HM at the
C-terminal extension. AGC kinases regulate many cellular
processes including division, growth, survival,
metabolism, motility, and differentiation. Many are
implicated in the development of various human diseases.
Length = 250
Score = 27.9 bits (63), Expect = 5.1
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 112 SSSYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYF 147
S DLIS +Q P +RL + I+ P+F
Sbjct: 217 SPEARDLISGLLQKDPTKRLGSGGAEE--IKAHPFF 250
Score = 27.9 bits (63), Expect = 5.1
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 235 SSSYADLISQAIQSSPEQRLTLSQIYDWMIQNVPYF 270
S DLIS +Q P +RL + I+ P+F
Sbjct: 217 SPEARDLISGLLQKDPTKRLGSGGAEE--IKAHPFF 250
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.129 0.392
Gapped
Lambda K H
0.267 0.0768 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,358,707
Number of extensions: 1299804
Number of successful extensions: 786
Number of sequences better than 10.0: 1
Number of HSP's gapped: 784
Number of HSP's successfully gapped: 25
Length of query: 289
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 193
Effective length of database: 6,679,618
Effective search space: 1289166274
Effective search space used: 1289166274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.0 bits)