BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1682
(70 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 97.1 bits (240), Expect = 3e-21, Method: Composition-based stats.
Identities = 44/67 (65%), Positives = 55/67 (82%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEA 61
FVALYDY++RT+ DLSF+KGE L+I+N+T+GDWWLA S +T Q GYIPSNYVA SI+A
Sbjct: 88 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQA 147
Query: 62 EPYDFKK 68
E + F K
Sbjct: 148 EEWYFGK 154
>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi
Sarcoma Viral (V-Yes) Oncogene Homolog 1
Length = 109
Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 54/68 (79%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
IFVALYDY+ART EDLSF+KGE +I+N+T+GDWW ARS AT + GYIPSNYV SI+
Sbjct: 29 IFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPADSIQ 88
Query: 61 AEPYDFKK 68
AE + F K
Sbjct: 89 AEEWYFGK 96
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 96.7 bits (239), Expect = 3e-21, Method: Composition-based stats.
Identities = 44/67 (65%), Positives = 55/67 (82%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEA 61
FVALYDY++RT+ DLSF+KGE L+I+N+T+GDWWLA S +T Q GYIPSNYVA SI+A
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQA 64
Query: 62 EPYDFKK 68
E + F K
Sbjct: 65 EEWYFGK 71
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase
C-src, In Complex With Amp-pnp
Length = 452
Score = 96.7 bits (239), Expect = 3e-21, Method: Composition-based stats.
Identities = 44/67 (65%), Positives = 55/67 (82%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEA 61
FVALYDY++RT+ DLSF+KGE L+I+N+T+GDWWLA S +T Q GYIPSNYVA SI+A
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQA 64
Query: 62 EPYDFKK 68
E + F K
Sbjct: 65 EEWYFGK 71
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 96.3 bits (238), Expect = 4e-21, Method: Composition-based stats.
Identities = 44/67 (65%), Positives = 55/67 (82%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEA 61
FVALYDY++RT+ DLSF+KGE L+I+N+T+GDWWLA S +T Q GYIPSNYVA SI+A
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQA 64
Query: 62 EPYDFKK 68
E + F K
Sbjct: 65 EEWYFGK 71
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 96.3 bits (238), Expect = 4e-21, Method: Composition-based stats.
Identities = 44/67 (65%), Positives = 54/67 (80%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEA 61
FVALYDY++RT+ DLSF+KGE L+I+N+T+GDWWLA S T Q GYIPSNYVA SI+A
Sbjct: 6 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYVAPSDSIQA 65
Query: 62 EPYDFKK 68
E + F K
Sbjct: 66 EEWYFGK 72
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 54/68 (79%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
+FVALYDY+ART++DLSF KGE +ILN ++GDWW ARS T + GYIPSNYVA + SI+
Sbjct: 5 LFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQ 64
Query: 61 AEPYDFKK 68
AE + F K
Sbjct: 65 AEEWYFGK 72
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn
Protein (Proto- Concogene Tyrosine-Protein Kinase Fyn)
From Mus Musculus At 1.98 A Resolution
Length = 164
Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 54/68 (79%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
+FVALYDY+ART++DLSF KGE +ILN ++GDWW ARS T + GYIPSNYVA + SI+
Sbjct: 6 LFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQ 65
Query: 61 AEPYDFKK 68
AE + F K
Sbjct: 66 AEEWYFGK 73
>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Complexed With The Synthetic Peptide
P2l Corresponding To Residues 91-104 Of The P85 Subunit
Of Pi3- Kinase, Family Of 25 Structures
Length = 69
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/62 (66%), Positives = 51/62 (82%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
+FVALYDY+ART++DLSF KGE +ILN ++GDWW ARS T + GYIPSNYVA + SI+
Sbjct: 7 LFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQ 66
Query: 61 AE 62
AE
Sbjct: 67 AE 68
>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Kinase Complexed With The Synthetic
Peptide P2l Corresponding To Residues 91-104 Of The P85
Subunit Of Pi3-Kinase, Minimized Average (Probmap)
Structure
pdb|1NYF|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Minimized Average (Probmap) Structure
pdb|1NYG|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Family Of 20 Structures
Length = 67
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/62 (66%), Positives = 51/62 (82%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
+FVALYDY+ART++DLSF KGE +ILN ++GDWW ARS T + GYIPSNYVA + SI+
Sbjct: 5 LFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQ 64
Query: 61 AE 62
AE
Sbjct: 65 AE 66
>pdb|2HDA|A Chain A, Yes Sh3 Domain
Length = 64
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/58 (70%), Positives = 48/58 (82%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
IFVALYDY+ART EDLSF+KGE +I+N+T+GDWW ARS AT + GYIPSNYVA S
Sbjct: 7 IFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKNGYIPSNYVAPADS 64
>pdb|1QWE|A Chain A, C-Src Sh3 Domain Complexed With Ligand App12
pdb|1QWF|A Chain A, C-Src Sh3 Domain Complexed With Ligand Vsl12
pdb|1NLO|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
pdb|1NLP|C Chain C, Structure Of Signal Transduction Protein, Nmr, Minimized
Average Structure
Length = 64
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 38/53 (71%), Positives = 46/53 (86%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVA 54
FVALYDY++RT+ DLSF+KGE L+I+N+T+GDWWLA S T Q GYIPSNYVA
Sbjct: 10 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYVA 62
>pdb|1PRL|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1PRM|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLP|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1RLQ|C Chain C, Two Binding Orientations For Peptides To Src Sh3 Domain:
Development Of A General Model For Sh3-Ligand
Interactions
pdb|1SRL|A Chain A, 1h And 15n Assignments And Secondary Structure Of The
Src Sh3 Domain
pdb|1SRM|A Chain A, 1h And 15n Assignments And Secondary Structure Of The
Src Sh3 Domain
Length = 64
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 38/53 (71%), Positives = 46/53 (86%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVA 54
FVALYDY++RT+ DLSF+KGE L+I+N+T+GDWWLA S T Q GYIPSNYVA
Sbjct: 10 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGQTGYIPSNYVA 62
>pdb|4HXJ|A Chain A, Crystal Structure Of Sh3:rgt Complex
pdb|4HXJ|B Chain B, Crystal Structure Of Sh3:rgt Complex
Length = 60
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 38/53 (71%), Positives = 47/53 (88%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVA 54
FVALYDY++RT+ DLSF+KGE L+I+N+T+GDWWLA S +T Q GYIPSNYVA
Sbjct: 5 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVA 57
>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 61
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 48/59 (81%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSI 59
+FVALYDY+ART++DLSF KGE +ILN ++GDWW ARS T + GYIPSNYVA + SI
Sbjct: 3 LFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVDSI 61
>pdb|3FJ5|A Chain A, Crystal Structure Of The C-Src-Sh3 Domain
pdb|3FJ5|B Chain B, Crystal Structure Of The C-Src-Sh3 Domain
Length = 57
Score = 85.9 bits (211), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 37/53 (69%), Positives = 46/53 (86%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVA 54
FVALYDY++RT+ DLSF+KGE L+I+N+T+GDWWLA S T + GYIPSNYVA
Sbjct: 3 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTGRTGYIPSNYVA 55
>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA6|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA7|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|C Chain C, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|D Chain D, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
Length = 64
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
+FVALYDY+ART++DLSF KGE +ILN ++GDWW ARS T + GYIPSNYVA + S
Sbjct: 7 LFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVDS 64
>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain
Length = 57
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 46/56 (82%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+FVALYDY+ART++DLSF KGE +ILN ++GDWW ARS T + GYIPSNYVA +
Sbjct: 2 LFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 57
>pdb|1FYN|A Chain A, Phosphotransferase
Length = 62
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 46/56 (82%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+FVALYDY+ART++DLSF KGE +ILN ++GDWW ARS T + GYIPSNYVA +
Sbjct: 6 LFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 61
>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1SHF|B Chain B, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1ZBJ|A Chain A, Inferential Structure Determination Of The Fyn Sh3
Domain Using Noesy Data From A 15n,H2 Enriched Protein
Length = 59
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 46/56 (82%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+FVALYDY+ART++DLSF KGE +ILN ++GDWW ARS T + GYIPSNYVA +
Sbjct: 3 LFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 58
>pdb|1EFN|A Chain A, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
pdb|1EFN|C Chain C, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
Length = 59
Score = 82.0 bits (201), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 46/58 (79%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
+FVALYDY+A T++DLSF KGE +ILN ++GDWW ARS T + GYIPSNYVA + S
Sbjct: 2 LFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVDS 59
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 53/67 (79%), Gaps = 1/67 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
I VALYDY+A EDLSF+KG+ + +L ++ G+WW ARS AT++EGYIPSNYVA++ S+E
Sbjct: 4 IVVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVDSLE 62
Query: 61 AEPYDFK 67
E + FK
Sbjct: 63 TEEWFFK 69
>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I
pdb|3H0I|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
pdb|3H0I|B Chain B, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
Length = 73
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+FVALYDY+A T++DLSF KGE +ILN ++GDWW ARS T + GYIPSNYVA +
Sbjct: 17 LFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 72
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 53/67 (79%), Gaps = 1/67 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
I VALYDY+A EDLSF+KG+ + +L ++ G+WW ARS AT++EGYIPSNYVA++ S+E
Sbjct: 10 IVVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVDSLE 68
Query: 61 AEPYDFK 67
E + FK
Sbjct: 69 TEEWFFK 75
>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant
Length = 73
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+FVALYDY+A T++DLSF KGE +ILN ++GDWW ARS T + GYIPSNYVA +
Sbjct: 17 LFVALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 72
>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck
Sh3-Sh2-Linker Regulatory Region
Length = 193
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 53/67 (79%), Gaps = 1/67 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
I VALYDY+A EDLSF+KG+ + +L ++ G+WW ARS AT++EGYIPSNYVA++ S+E
Sbjct: 11 IVVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVDSLE 69
Query: 61 AEPYDFK 67
E + FK
Sbjct: 70 TEEWFFK 76
>pdb|4D8D|A Chain A, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
pdb|4D8D|C Chain C, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
Length = 58
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+FVALYDY+A T++DLSF KGE +ILN ++GDWW ARS T + GYIPSNYVA +
Sbjct: 3 LFVALYDYEAWTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 58
>pdb|4HCK|A Chain A, Human Hck Sh3 Domain, Nmr, 25 Structures
pdb|5HCK|A Chain A, Human Hck Sh3 Domain, Nmr, Minimized Average Structure
Length = 72
Score = 78.6 bits (192), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 50/62 (80%), Gaps = 1/62 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
I VALYDY+A EDLSF+KG+ + +L ++ G+WW ARS AT++EGYIPSNYVA++ S+E
Sbjct: 11 IVVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVDSLE 69
Query: 61 AE 62
E
Sbjct: 70 TE 71
>pdb|4AG2|C Chain C, Human Chymase - Fynomer Complex
pdb|4AG2|D Chain D, Human Chymase - Fynomer Complex
Length = 84
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 44/62 (70%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
+FVALYDY+A DLSF KGE +IL+ GDWW ARS T + GYIPSNYVA + SI+
Sbjct: 8 LFVALYDYNATRWTDLSFHKGEKFQILDGDSGDWWEARSLTTGETGYIPSNYVAPVDSIQ 67
Query: 61 AE 62
E
Sbjct: 68 GE 69
>pdb|2OI3|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase
Sh3 Domain Complexed With An Artificial High Affinity
Ligand (Pd1)
pdb|2OJ2|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase
Sh3 Domain Complexed With An Artificial High Affinity
Ligand (Pd1)
Length = 86
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 49/60 (81%), Gaps = 1/60 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
I VALYDY+A EDLSF+KG+ + +L ++ G+WW ARS AT++EGYIPSNYVA++ S+E
Sbjct: 27 IVVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVDSLE 85
>pdb|3CQT|A Chain A, N53i V55l Mutant Of Fyn Sh3 Domain
Length = 79
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 46/60 (76%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
+F ALYDY+ART++DLSF KGE +ILN ++GDWW ARS T + GYIPS Y+A + ++
Sbjct: 7 LFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDRLD 66
>pdb|4AFZ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFZ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AG1|C Chain C, Human Chymase - Fynomer Complex
Length = 84
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 43/62 (69%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
+FVALYDY+A DLSF KGE +IL GDWW ARS T + GYIPSNYVA + SI+
Sbjct: 8 LFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDSIQ 67
Query: 61 AE 62
E
Sbjct: 68 GE 69
>pdb|2L2P|A Chain A, Folding Intermediate Of The Fyn Sh3 A39vN53PV55L FROM
NMR RELAXATION Dispersion Experiments
pdb|2LP5|A Chain A, Native Structure Of The Fyn Sh3 A39vN53PV55L
Length = 66
Score = 75.5 bits (184), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 43/56 (76%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+F ALYDY+ART++DLSF KGE +ILN ++GDWW RS T + GYIPS Y+A +
Sbjct: 9 LFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEVRSLTTGETGYIPSPYLAPV 64
>pdb|1BU1|A Chain A, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|B Chain B, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|E Chain E, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|C Chain C, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|D Chain D, Src Family Kinase Hck Sh3 Domain
pdb|1BU1|F Chain F, Src Family Kinase Hck Sh3 Domain
Length = 57
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 46/56 (82%), Gaps = 1/56 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
I VALYDY+A EDLSF+KG+ + +L ++ G+WW ARS AT++EGYIPSNYVA++
Sbjct: 2 IVVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARV 56
>pdb|4AFQ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFQ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AFS|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFU|D Chain D, Human Chymase - Fynomer Complex
Length = 85
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQ-GDWWLARSKATKQEGYIPSNYVAKLKSI 59
+FVALYDY A DLSF KGE +IL+ + GDWW ARS T + GYIPSNYVA + SI
Sbjct: 8 LFVALYDYQADRWTDLSFHKGEKFQILDASPPGDWWEARSLTTGETGYIPSNYVAPVDSI 67
Query: 60 EAE 62
+ E
Sbjct: 68 QGE 70
>pdb|1LCK|A Chain A, Sh3-Sh2 Domain Fragment Of Human P56-Lck Tyrosine Kinase
Complexed With The 10 Residue Synthetic Phosphotyrosyl
Peptide Tegqpyqpqpa
Length = 175
Score = 72.0 bits (175), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
+ +AL+ Y+ D DL F KGE L IL + G+WW A+S T QEG+IP N+VAK S+E
Sbjct: 14 LVIALHSYEPSHDGDLGFEKGEQLRIL-EQSGEWWKAQSLTTGQEGFIPFNFVAKANSLE 72
Query: 61 AEPYDFKK 68
EP+ FK
Sbjct: 73 PEPWFFKN 80
>pdb|1X27|A Chain A, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site
Of P130cas
pdb|1X27|B Chain B, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site
Of P130cas
pdb|1X27|C Chain C, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site
Of P130cas
pdb|1X27|D Chain D, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site
Of P130cas
pdb|1X27|E Chain E, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site
Of P130cas
pdb|1X27|F Chain F, Crystal Structure Of Lck Sh2-Sh3 With Sh2 Binding Site
Of P130cas
Length = 167
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
+ +AL+ Y+ D DL F KGE L IL + G+WW A+S T QEG+IP N+VAK S+E
Sbjct: 6 LVIALHSYEPSHDGDLGFEKGEQLRILEQS-GEWWKAQSLTTGQEGFIPFNFVAKANSLE 64
Query: 61 AEPYDFKK 68
EP+ FK
Sbjct: 65 PEPWFFKN 72
>pdb|4D8K|A Chain A, Crystal Structure Of A Sh3-Sh2 Domains Of A
Lymphocyte-Specific Protein Tyrosine Kinase (Lck) From
Homo Sapiens At 2.36 A Resolution
Length = 175
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 45/68 (66%), Gaps = 1/68 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
+ +AL+ Y+ D DL F KGE L IL + G+WW A+S T QEG+IP N+VAK S+E
Sbjct: 14 LVIALHSYEPSHDGDLGFEKGEQLRIL-EQSGEWWKAQSLTTGQEGFIPFNFVAKANSLE 72
Query: 61 AEPYDFKK 68
EP+ FK
Sbjct: 73 PEPWFFKN 80
>pdb|3REB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 90
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 47/58 (81%), Gaps = 1/58 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
I VALYDY + + +DLSF+KG+ + +L ++ G+WW ARS AT++EGYIPSNYVA++ S
Sbjct: 5 IVVALYDYVSWSPDDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVDS 61
>pdb|3REA|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
pdb|3REA|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3
Domain
Length = 61
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 47/58 (81%), Gaps = 1/58 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
I VALYDY + + +DLSF+KG+ + +L ++ G+WW ARS AT++EGYIPSNYVA++ S
Sbjct: 5 IVVALYDYVSWSPDDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVDS 61
>pdb|1W1F|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase
pdb|1WA7|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase In Complex With
A Herpesviral Ligand
Length = 65
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
I VALY YD +DLSF+KGE +++L + G+WW A+S TK+EG+IPSNYVAKL +
Sbjct: 9 IVVALYPYDGIHPDDLSFKKGEKMKVLEE-HGEWWKAKSLLTKKEGFIPSNYVAKLNT 65
>pdb|3RBB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
pdb|3RBB|D Chain D, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3
Domain
Length = 61
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 45/58 (77%), Gaps = 1/58 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
I VALYDY + DLSF+KG+ + +L ++ G+WW ARS AT++EGYIPSNYVA++ S
Sbjct: 5 IVVALYDYYSPFSWDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVDS 61
>pdb|2D8J|A Chain A, Solution Structure Of The Sh3 Domain Of Fyn-Related
Kinase
Length = 77
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 43/61 (70%), Gaps = 7/61 (11%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLAR---SKAT----KQEGYIPSNYVA 54
FVAL+DY ART EDLSFR G+ L++L+ + WWLAR K T + +GYIPSNYVA
Sbjct: 10 FVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVA 69
Query: 55 K 55
+
Sbjct: 70 E 70
>pdb|2IIM|A Chain A, Sh3 Domain Of Human Lck
Length = 62
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAK 55
+ +AL+ Y+ D DL F KGE L IL + G+WW A+S T QEG+IP N+VAK
Sbjct: 8 LVIALHSYEPSHDGDLGFEKGEQLRILEQS-GEWWKAQSLTTGQEGFIPFNFVAK 61
>pdb|1H92|A Chain A, Sh3 Domain Of Human Lck Tyrosine Kinase
Length = 63
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAK 55
+ +AL+ Y+ D DL F KGE L IL + G+WW A+S T QEG+IP N+VAK
Sbjct: 8 LVIALHSYEPSHDGDLGFEKGEQLRILEQS-GEWWKAQSLTTGQEGFIPFNFVAK 61
>pdb|1KIK|A Chain A, Sh3 Domain Of Lymphocyte Specific Kinase (Lck)
Length = 57
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAK 55
+ +AL+ Y+ D DL F KGE L IL + G+WW A+S T QEG+IP N+VAK
Sbjct: 2 LVIALHSYEPSHDGDLGFEKGEQLRILEQS-GEWWKAQSLTTGQEGFIPFNFVAK 55
>pdb|1AWW|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, 42
Structures
pdb|1AWX|A Chain A, Sh3 Domain From Bruton's Tyrosine Kinase, Nmr, Minimized
Average Structure
Length = 67
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAK 55
VALYDY DL RKG+ IL ++ WW AR K QEGYIPSNYV +
Sbjct: 11 VVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDK-NGQEGYIPSNYVTE 63
>pdb|1QLY|A Chain A, Nmr Study Of The Sh3 Domain From Bruton's Tyrosine
Kinase, 20 Structures
Length = 58
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAK 55
VALYDY DL RKG+ IL ++ WW AR K QEGYIPSNYV +
Sbjct: 5 VALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDK-NGQEGYIPSNYVTE 56
>pdb|2ABL|A Chain A, Sh3-Sh2 Domain Fragment Of Human Bcr-Abl Tyrosine Kinase
Length = 163
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILN-DTQGDWWLARSKATKQEGYIPSNYVAKLKSI 59
+FVALYD+ A D LS KGE L +L + G+W A++K +G++PSNY+ + S+
Sbjct: 10 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTK--NGQGWVPSNYITPVNSL 67
Query: 60 E 60
E
Sbjct: 68 E 68
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILN-DTQGDWWLARSKATKQEGYIPSNYVAKLKSI 59
+FVALYD+ A D LS KGE L +L + G+W A++K +G++PSNY+ + S+
Sbjct: 45 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTK--NGQGWVPSNYITPVNSL 102
Query: 60 E 60
E
Sbjct: 103 E 103
>pdb|2RMO|A Chain A, Solution Structure Of Alpha-Spectrin_sh3-Bergerac From
Chicken
Length = 70
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 6/62 (9%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKAT------KQEGYIPSNYVA 54
+ +ALYDY ++ +++ +KG+ L +LN T DWW KAT +++G++P+ YV
Sbjct: 8 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANGKTYERQGFVPAAYVK 67
Query: 55 KL 56
KL
Sbjct: 68 KL 69
>pdb|2KR3|A Chain A, Solution Structure Of Sha-D
Length = 70
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 6/62 (9%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKAT------KQEGYIPSNYVA 54
+ +ALYDY ++ +++ +KG+ L +LN T DWW KAT +++G++P+ YV
Sbjct: 8 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKATANDKTYERQGFVPAAYVK 67
Query: 55 KL 56
KL
Sbjct: 68 KL 69
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
+ +YDY A+ D++L+F KG+ + +LN DWW + + + Q G PSNYV
Sbjct: 6 IGMYDYTAQNDDELAFSKGQIINVLNKEDPDWW--KGEVSGQVGLFPSNYV 54
>pdb|1GL5|A Chain A, Nmr Structure Of The Sh3 Domain From The Tec Protein
Tyrosine Kinase
Length = 67
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
I VA+YD+ A DL +G+ IL WW AR K EGYIPSNYV KS
Sbjct: 4 IVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGS-EGYIPSNYVTGKKSNN 62
Query: 61 AEPYD 65
+ YD
Sbjct: 63 LDQYD 67
>pdb|3I9Q|A Chain A, Crystal Structure Of The Triple Mutant S19g-P20d-R21s Of
Alpha Spectrin Sh3 Domain
Length = 57
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+ +ALYDY + D +++ +KG+ L +LN T DWW + + ++G++P+ YV KL
Sbjct: 3 LVLALYDYQEKGDSEVTMKKGDILTLLNSTNKDWW--KVEVNDRQGFVPAAYVKKL 56
>pdb|1NEG|A Chain A, Crystal Structure Analysis Of N-And C-Terminal Labeled
Sh3- Domain Of Alpha-Chicken Spectrin
Length = 83
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
+ +ALYDY ++ +++ +KG+ L +LN T DWW + + ++G++P+ YV KL +
Sbjct: 19 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWW--KVEVNDRQGFVPAAYVKKLAAAW 76
Query: 61 AEP 63
+ P
Sbjct: 77 SHP 79
>pdb|1HD3|A Chain A, A-Spectrin Sh3 Domain F52y Mutant
Length = 62
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+ +ALYDY ++ +++ +KG+ L +LN T DWW + + ++GY+P+ YV KL
Sbjct: 8 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWW--KVEVNDRQGYVPAAYVKKL 61
>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant)
Length = 62
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+ +ALYDY ++ +++ +KG+ L +LN T DWW +++ ++G++P+ YV KL
Sbjct: 8 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWW--KTEVNGRQGFVPAAYVKKL 61
>pdb|2CDT|A Chain A, Alpha-Spectrin Sh3 Domain A56s Mutant
Length = 62
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+ +ALYDY ++ +++ +KG+ L +LN T DWW + + ++G++P++YV KL
Sbjct: 8 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWW--KVEVNDRQGFVPASYVKKL 61
>pdb|2OAW|A Chain A, Structure Of Shh Variant Of "bergerac" Chimera Of
Spectrin Sh3
pdb|2OAW|B Chain B, Structure Of Shh Variant Of "bergerac" Chimera Of
Spectrin Sh3
pdb|2OAW|C Chain C, Structure Of Shh Variant Of "bergerac" Chimera Of
Spectrin Sh3
pdb|2OAW|D Chain D, Structure Of Shh Variant Of "bergerac" Chimera Of
Spectrin Sh3
Length = 65
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 6/62 (9%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKAT------KQEGYIPSNYVA 54
+ +ALYDY ++ +++ +KG+ L +LN T DWW K T +++G++P+ YV
Sbjct: 3 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVK 62
Query: 55 KL 56
KL
Sbjct: 63 KL 64
>pdb|2F2V|A Chain A, Alpha-Spectrin Sh3 Domain A56g Mutant
Length = 62
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+ +ALYDY ++ +++ +KG+ L +LN T DWW + + ++G++P+ YV KL
Sbjct: 8 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWW--KVEVNDRQGFVPAGYVKKL 61
>pdb|2ROT|A Chain A, Structure Of Chimeric Variant Of Sh3 Domain- Shh
Length = 70
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 6/62 (9%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKAT------KQEGYIPSNYVA 54
+ +ALYDY ++ +++ +KG+ L +LN T DWW K T +++G++P+ YV
Sbjct: 8 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVK 67
Query: 55 KL 56
KL
Sbjct: 68 KL 69
>pdb|3M0S|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
7
Length = 57
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+ +ALYDY ++ ++++ +KG+ L +LN T DWW + + ++G++P+ YV KL
Sbjct: 3 LVLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWW--KVEVNDRQGFVPAAYVKKL 56
>pdb|1BBZ|A Chain A, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
pdb|1BBZ|C Chain C, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
pdb|1BBZ|G Chain G, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
pdb|1BBZ|E Chain E, Crystal Structure Of The Abl-Sh3 Domain Complexed With A
Designed High-Affinity Peptide Ligand: Implications For
Sh3-Ligand Interactions
Length = 58
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILN-DTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
+FVALYD+ A D LS KGE L +L + G+W A++K +G++PSNY+ + S
Sbjct: 2 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTK--NGQGWVPSNYITPVNS 58
>pdb|3M0P|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
4.
pdb|3M0Q|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
5.
pdb|3M0R|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
6.
pdb|3M0T|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph
9.
pdb|3M0U|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin
Sh3 Domain. Hexagonal Crystal Obtained In Sodium
Formate At Ph 6.5
Length = 62
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+ +ALYDY ++ ++++ +KG+ L +LN T DWW + + ++G++P+ YV KL
Sbjct: 8 LVLALYDYQEKSPDEVTMKKGDILTLLNSTNKDWW--KVEVNDRQGFVPAAYVKKL 61
>pdb|1ABO|A Chain A, Crystal Structure Of The Complex Of The Abl Tyrosine
Kinase Sh3 Domain With 3bp-1 Synthetic Peptide
pdb|1ABO|B Chain B, Crystal Structure Of The Complex Of The Abl Tyrosine
Kinase Sh3 Domain With 3bp-1 Synthetic Peptide
pdb|1ABQ|A Chain A, Crystal Structure Of The Unliganded Abl Tyrosine Kinase
Sh3 Domain
Length = 62
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILN-DTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
+FVALYD+ A D LS KGE L +L + G+W A++K +G++PSNY+ + S
Sbjct: 6 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTK--NGQGWVPSNYITPVNS 62
>pdb|1BK2|A Chain A, A-Spectrin Sh3 Domain D48g Mutant
Length = 57
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+ +ALYDY ++ +++ +KG+ L +LN T DWW + + ++G++P+ YV KL
Sbjct: 3 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWW--KVEVNGRQGFVPAAYVKKL 56
>pdb|1JU5|C Chain C, Ternary Complex Of An Crk Sh2 Domain, Crk-Derived
Phophopeptide, And Abl Sh3 Domain By Nmr Spectroscopy
Length = 61
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILN-DTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
+FVALYD+ A D LS KGE L +L + G+W A++K +G++PSNY+ + S
Sbjct: 4 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTK--NGQGWVPSNYITPVNS 60
>pdb|3THK|A Chain A, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
pdb|3THK|B Chain B, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To
The Chain C- Terminal
Length = 73
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+ +ALYDY ++ +++ +KG+ L +LN T DWW + + ++G++P+ YV KL
Sbjct: 7 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWW--KVEVNDRQGFVPAAYVKKL 60
>pdb|1PWT|A Chain A, Thermodynamic Analysis Of Alpha-Spectrin Sh3 And Two Of
Its Circular Permutants With Different Loop Lengths:
Discerning The Reasons For Rapid Folding In Proteins
Length = 61
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+ +ALYDY ++ +++ +KG+ L +LN T DWW + + ++G++P+ YV KL
Sbjct: 7 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWW--KVEVNDRQGFVPAAYVKKL 60
>pdb|2LJ3|A Chain A, Pfbd: High-Throughput Strategy Of Backbone Fold
Determination For Small Well-Folded Proteins In Less
Than A Day
Length = 63
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+ +ALYDY ++ +++ +KG+ L +LN T DWW + + ++G++P+ YV KL
Sbjct: 8 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWW--KVEVNDRQGFVPAAYVKKL 61
>pdb|1M8M|A Chain A, Solid-State Mas Nmr Structure Of The A-Spectrin Sh3
Domain
pdb|1U06|A Chain A, Crystal Structure Of Chicken Alpha-Spectrin Sh3 Domain
pdb|2NUZ|A Chain A, Crystal Structure Of Alpha Spectrin Sh3 Domain Measured
At Room Temperature
pdb|1AEY|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Solution Nmr, 15
Structures
pdb|1SHG|A Chain A, Crystal Structure Of A Src-Homology 3 (Sh3) Domain
Length = 62
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+ +ALYDY ++ +++ +KG+ L +LN T DWW + + ++G++P+ YV KL
Sbjct: 8 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWW--KVEVNDRQGFVPAAYVKKL 61
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 49.7 bits (117), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILN-DTQGDWWLARSKATKQEGYIPSNYVAKLKSI 59
+FVALYD+ A D LS KGE L +L + G+W A++K +G++PSNY+ + S+
Sbjct: 84 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTK--NGQGWVPSNYITPVNSL 141
Query: 60 EAEPY 64
E +
Sbjct: 142 EKHSW 146
>pdb|2F2W|A Chain A, Alpha-Spectrin Sh3 Domain R21a Mutant
pdb|2JM8|A Chain A, R21a Spc-Sh3 Free
pdb|2JM9|A Chain A, R21a Spc-Sh3 Bound
pdb|2JMA|A Chain A, R21a Spc-Sh3:p41 Complex
Length = 62
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+ +ALYDY ++ +++ +KG+ L +LN T DWW + + ++G++P+ YV KL
Sbjct: 8 LVLALYDYQEKSPAEVTMKKGDILTLLNSTNKDWW--KVEVNDRQGFVPAAYVKKL 61
>pdb|1QKX|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47a Mutant In The
Distal Loop
Length = 62
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+ +ALYDY ++ +++ +KG+ L +LN T DWW + + ++G++P+ YV KL
Sbjct: 8 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWW--KVEVADRQGFVPAAYVKKL 61
>pdb|1X2P|A Chain A, Solution Structure Of The Sh3 Domain Of The Protein
Arginine N-Methyltransferase 2
Length = 68
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAK 55
FVA+ DY A + LSF +GE + IL T DWW GYIP+N+V K
Sbjct: 10 FVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCC--GYIPANHVGK 61
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 49.3 bits (116), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILN-DTQGDWWLARSKATKQEGYIPSNYVAKLKSI 59
+FVALYD+ A D LS KGE L +L + G+W A++K +G++PSNY+ + S+
Sbjct: 42 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTK--NGQGWVPSNYITPVNSL 99
Query: 60 EAEPY 64
E +
Sbjct: 100 EKHSW 104
>pdb|3QWX|X Chain X, Ced-2 1-174
Length = 174
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
+ V + + + DL F +GE LEIL+ T DWW AR+ A G +P+NYV
Sbjct: 120 VVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARN-ALGTTGLVPANYV 171
>pdb|2B86|A Chain A, Solution Structure Of The First Src Homology 3 Domain Of
Nck2
Length = 67
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAK 55
I +A +DY A+ D++L +K E L +L+D++ WW R+ A + GY+PSNYV +
Sbjct: 6 IVIAKWDYTAQQDQELDIKKNERLWLLDDSKT-WWRVRNAANRT-GYVPSNYVER 58
>pdb|2F2X|A Chain A, Alpha-Spectrin Sh3 Domain R21g Mutant
Length = 62
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+ +ALYDY ++ +++ +KG+ L +LN T DWW + + ++G++P+ YV KL
Sbjct: 8 LVLALYDYQEKSPGEVTMKKGDILTLLNSTNKDWW--KVEVNDRQGFVPAAYVKKL 61
>pdb|2JXB|A Chain A, Structure Of Cd3epsilon-Nck2 First Sh3 Domain Complex
Length = 86
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAK 55
I +A +DY A+ D++L +K E L +L+D++ WW R+ A + GY+PSNYV +
Sbjct: 33 IVIAKWDYTAQQDQELDIKKNERLWLLDDSKT-WWRVRNAANRT-GYVPSNYVER 85
>pdb|1AWO|A Chain A, The Solution Nmr Structure Of Abl Sh3 And Its
Relationship To Sh2 In The Sh(32) Construct, 20
Structures
Length = 62
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILN-DTQGDWWLARSKATKQEGYIPSNYVAKL 56
+FVALYD+ A D LS KGE L +L + G+W A++K +G++PSNY+ +
Sbjct: 7 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTK--NGQGWVPSNYITPV 61
>pdb|1QKW|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47g Mutant In The
Distal Loop
Length = 62
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+ +ALYDY ++ +++ +KG+ L +LN T DWW + + ++G++P+ YV KL
Sbjct: 8 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWW--KVEVGDRQGFVPAAYVKKL 61
>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain
pdb|2A08|B Chain B, Structure Of The Yeast Yhh6 Sh3 Domain
Length = 60
Score = 48.5 bits (114), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 4/53 (7%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEIL--NDTQGDWWLARSKATKQEGYIPSNYV 53
VALY++ DL+F+KG+ + IL +D+Q DWW R+ +EG P+NYV
Sbjct: 7 VALYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTGRTNG--KEGIFPANYV 57
>pdb|1E6G|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25i, V53i, V58l
Mutant
Length = 62
Score = 48.5 bits (114), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+ + LYDY ++ +L+ +KG+ L +LN T DWW + + ++G+IP+ Y+ KL
Sbjct: 8 LVLVLYDYQEKSPRELTIKKGDILTLLNSTNKDWW--KVEVNDRQGFIPAAYLKKL 61
>pdb|3QWY|A Chain A, Ced-2
pdb|3QWY|B Chain B, Ced-2
Length = 308
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
+ V + + + DL F +GE LEIL+ T DWW AR+ A G +P+NYV
Sbjct: 149 VVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARN-ALGTTGLVPANYV 200
>pdb|3EG0|A Chain A, Crystal Structure Of The N114t Mutant Of Abl-Sh3 Domain
Length = 63
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILN-DTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
+FVALYD+ A D LS KGE L +L + G+W A++K +G++PS Y+ + S
Sbjct: 7 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTK--NGQGWVPSTYITPVNS 63
>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein At 1.39 A Resolution
pdb|1SSH|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein In Complex With A Peptide
Length = 60
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEIL--NDTQGDWWLARSKATKQEGYIPSNYV 53
VALY + DL FRKG+ + IL +D+Q DWW R +EG P+NYV
Sbjct: 7 VALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGR--VNGREGIFPANYV 57
>pdb|3NGP|A Chain A, High Resolution Structure Of Alpha-Spectrin Sh3 Domain
Mutant With A Redesigned Core
Length = 62
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+ + LYDY ++ +L+ +KG+ L +LN T DWW + + ++G++P+ Y+ KL
Sbjct: 8 LVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWW--KIEVNGRQGFVPAAYLKKL 61
>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal
Transducing Adaptor Molecule 2
Length = 88
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEAE 62
ALYD++A D +L+F+ GE + +L+D+ +WW + + + G PSN+V +IE E
Sbjct: 22 ALYDFEAVEDNELTFKHGEIIIVLDDSDANWW--KGENHRGIGLFPSNFVTTNLNIETE 78
>pdb|3EG1|A Chain A, Crystal Structure Of The N114q Mutant Of Abl-Sh3 Domain
Complexed With A Designed High-Affinity Peptide Ligand:
Implications For Sh3-Ligand Interactions
pdb|3EG1|B Chain B, Crystal Structure Of The N114q Mutant Of Abl-Sh3 Domain
Complexed With A Designed High-Affinity Peptide Ligand:
Implications For Sh3-Ligand Interactions
pdb|3EG2|A Chain A, Crystal Structure Of The N114q Mutant Of Abl-Sh3 Domain
Length = 63
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILN-DTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
+FVALYD+ A D LS KGE L +L + G+W A++K +G++PS Y+ + S
Sbjct: 7 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTK--NGQGWVPSQYITPVNS 63
>pdb|1E7O|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V44i, V58l
Mutations
Length = 62
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+ + LYDY ++ +L+ +KG+ L +LN T DWW + + ++G++P+ Y+ KL
Sbjct: 8 LVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWW--KIEVNDRQGFVPAAYLKKL 61
>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN
pdb|1OEB|B Chain B, MonaGADS SH3C DOMAIN
pdb|2W10|A Chain A, Mona Sh3c In Complex
pdb|2W10|B Chain B, Mona Sh3c In Complex
Length = 62
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
ALYD++A +++L FR GE +E+L+ + WW R + G P+NYVA +
Sbjct: 10 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLH--NKLGLFPANYVAPM 60
>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
pdb|2D0N|C Chain C, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
Length = 59
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
ALYD++A +++L FR GE +E+L+ + WW R + G P+NYVA +
Sbjct: 7 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLH--NKLGLFPANYVAPM 57
>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE
Length = 58
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
ALYD++A +++L FR GE +E+L+ + WW R + G P+NYVA +
Sbjct: 6 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLH--NKLGLFPANYVAPM 56
>pdb|3EG3|A Chain A, Crystal Structure Of The N114a Mutant Of Abl-sh3 Domain
pdb|3EGU|A Chain A, Crystal Structure Of The N114a Mutant Of Abl-Sh3 Domain
Length = 63
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILN-DTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
+FVALYD+ A D LS KGE L +L + G+W A++K +G++PS Y+ + S
Sbjct: 7 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTK--NGQGWVPSAYITPVNS 63
>pdb|2O88|A Chain A, Crystal Structure Of The N114a Mutant Of Abl-Sh3 Domain
Complexed With A Designed High-Affinity Peptide Ligand:
Implications For Sh3-Ligand Interactions
pdb|2O88|B Chain B, Crystal Structure Of The N114a Mutant Of Abl-Sh3 Domain
Complexed With A Designed High-Affinity Peptide Ligand:
Implications For Sh3-Ligand Interactions
Length = 58
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILN-DTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
+FVALYD+ A D LS KGE L +L + G+W A++K +G++PS Y+ + S
Sbjct: 2 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTK--NGQGWVPSAYITPVNS 58
>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An
Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal
Sh3 Domain
Length = 60
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
ALYD++A +++L FR GE +E+L+ + WW R + G P+NYVA +
Sbjct: 8 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLH--NKLGLFPANYVAPM 58
>pdb|2JW4|A Chain A, Nmr Solution Structure Of The N-Terminal Sh3 Domain Of
Human Nckalpha
Length = 72
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
+ VA +DY A+ +++L +K E L +L+D++ WW R+ K G++PSNYV + S
Sbjct: 9 VVVAKFDYVAQQEQELDIKKNERLWLLDDSKS-WWRVRNSMNKT-GFVPSNYVERKNSAR 66
Query: 61 A 61
A
Sbjct: 67 A 67
>pdb|2KGT|A Chain A, Solution Structure Of Sh3 Domain Of Ptk6
Length = 72
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWW---LARSKATKQEGYIPSNYVAKLKS 58
+V L+D+ +RTDE+LSFR G+ + + WW L + +GY+P NY+A+ ++
Sbjct: 13 YVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYLAERET 72
>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of
Intersectin 2 (Kiaa1256)
Length = 98
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
+A+YDY A +++LSF KG+ + ++N DWW + + G PSNYV
Sbjct: 38 IAMYDYAANNEDELSFSKGQLINVMNKDDPDWW--QGEINGVTGLFPSNYV 86
>pdb|1E6H|A Chain A, A-Spectrin Sh3 Domain A11v, M25i, V44i, V58l Mutants
Length = 62
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+ + LYDY ++ +++ +KG+ L +LN T DWW + + ++G++P+ Y+ KL
Sbjct: 8 LVLVLYDYQEKSPREVTIKKGDILTLLNSTNKDWW--KIEVNDRQGFVPAAYLKKL 61
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 46.6 bits (109), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
+A+YDY A +++LSF KG+ + ++N DWW + + G PSNYV
Sbjct: 22 IAMYDYAANNEDELSFSKGQLINVMNKDDPDWW--QGEINGVTGLFPSNYV 70
>pdb|1H8K|A Chain A, A-Spectrin Sh3 Domain A11v, V23l, M25v, V53i, V58l
Mutant
Length = 62
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+ + LYDY ++ +++ +KG+ L +LN T DWW + + ++G+IP+ Y+ KL
Sbjct: 8 LVLVLYDYQEKSPREVTVKKGDILTLLNSTNKDWW--KVEVDDRQGFIPAAYLKKL 61
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 46.6 bits (109), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEIL---NDTQGDWWLARSKATKQEGYIPSNY 52
AL+DY A ++LSFR+GE + +L + DWW A QEGY+P NY
Sbjct: 159 ALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHG--QEGYVPRNY 208
>pdb|2A37|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Drkn Sh3 Domain)
pdb|2AZV|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Calculated Without Noes)
Length = 59
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 37/52 (71%), Gaps = 3/52 (5%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILN-DTQGDWWLARSKATKQEGYIPSNYV 53
+A +D+ A D++LSFRKG+ L+ILN + +W+ R++ +EG IPSNY+
Sbjct: 4 IAKHDFSATADDELSFRKGQILKILNMEDDSNWY--RAELDGKEGLIPSNYI 53
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 45.8 bits (107), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 5 LYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEAEPY 64
LYD+ EDL F+KGE L I+ + WW AR+K + G IP YV KL + + P+
Sbjct: 131 LYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRV-GMIPVPYVEKL--VRSSPH 187
>pdb|2VVK|A Chain A, Grb2 Sh3c (1)
Length = 56
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLK 57
AL+D+D + D +L FR+G+ + +++++ +WW + Q G P NYV +
Sbjct: 5 ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWW--KGACHGQTGMFPRNYVTPVN 56
>pdb|2JS2|A Chain A, Solution Structure Of First Sh3 Domain Of Adaptor Nck
Length = 63
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
+ VA +DY A+ +++L +K E L +L+D++ WW R+ K G++PSNYV + S
Sbjct: 8 VVVAKFDYVAQQEQELDIKKNERLWLLDDSKS-WWRVRNSMNKT-GFVPSNYVERKNS 63
>pdb|1WXT|A Chain A, Solution Structure Of The Sh3 Domain Of Human
Hypothetical Protein Flj21522
Length = 68
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
LY+++AR +L+ +GE LE+L+ ++ WWL +++A + GYIPSN + L
Sbjct: 12 VLYEFEARNPRELTVVQGEKLEVLDHSK-RWWLVKNEAGRS-GYIPSNILEPL 62
>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains
pdb|1GCQ|B Chain B, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 61
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLK 57
AL+D+D + D +L FR+G+ + +++++ +WW + Q G P NYV +
Sbjct: 7 ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWW--KGACHGQTGMFPRNYVTPVN 58
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 45.8 bits (107), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 5 LYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEAEPY 64
LYD+ EDL F+KGE L I+ + WW AR+K + G IP YV KL + + P+
Sbjct: 131 LYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRV-GMIPVPYVEKL--VRSSPH 187
>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal
Sh3 Domain Complexed With A Ligand Peptide (Nmr,
Minimized Mean Structure)
pdb|1GFC|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
pdb|1GFD|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
Length = 59
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLK 57
AL+D+D + D +L FR+G+ + +++++ +WW + Q G P NYV +
Sbjct: 7 ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWW--KGACHGQTGMFPRNYVTPVN 58
>pdb|2VWF|A Chain A, Grb2 Sh3c (2)
pdb|2W0Z|A Chain A, Grb2 Sh3c (3)
Length = 58
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLK 57
AL+D+D + D +L FR+G+ + +++++ +WW + Q G P NYV +
Sbjct: 7 ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWW--KGACHGQTGMFPRNYVTAVN 58
>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac
Protein
Length = 68
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
+VALY + + +EDL R G+ + +L D+ DWW + K + G+ P+N+V +L
Sbjct: 10 YVALYKFVPQENEDLEMRPGDIITLLEDSNEDWW--KGKIQDRIGFFPANFVQRLSG 64
>pdb|2FRY|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Nck2
Adaptor Protein
Length = 61
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGD--WWLARSKATKQEGYIPSNYVAKL 56
+ LY + + T+E+L+F KGE +E++ + D WW ++ A Q G +P NYV L
Sbjct: 4 VVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKN-ARGQVGLVPKNYVVVL 60
>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor 1 (Ostf1)
Length = 68
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAK 55
+F ALY ++ RT ++L F +G+ + I + + +WW SK + G IPSNYVA+
Sbjct: 9 VFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKG--RTGLIPSNYVAE 61
>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor
Length = 58
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAK 55
+F ALY ++ RT ++L F +G+ + I + + +WW SK + G IPSNYVA+
Sbjct: 5 VFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKG--RTGLIPSNYVAE 57
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
AL+D+D + D +L FR+G+ + +++++ +WW + Q G P NYV +
Sbjct: 163 ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWW--KGACHGQTGMFPRNYVTPV 213
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 41/66 (62%), Gaps = 5/66 (7%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEAE 62
+A YD+ A D++LSF++G+ L++LN+ W +++ ++G+IP NY+ ++
Sbjct: 4 IAKYDFKATADDELSFKRGDILKVLNEECDQNWY-KAELNGKDGFIPKNYI----EMKPH 58
Query: 63 PYDFKK 68
P+ F K
Sbjct: 59 PWFFGK 64
>pdb|1WX6|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck2
Length = 91
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGD--WWLARSKATKQEGYIPSNYVAKL 56
+ LY + + T+E+L+F KGE +E++ + D WW ++ A Q G +P NYV L
Sbjct: 19 VVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKN-ARGQVGLVPKNYVVVL 75
>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A
Ubpy-Derived Peptide
Length = 62
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVA 54
ALYD++A D +L+F+ GE + +L+D+ +WW + + + G PSN+V
Sbjct: 10 ALYDFEAVEDNELTFKHGELITVLDDSDANWW--QGENHRGTGLFPSNFVT 58
>pdb|1U5S|A Chain A, Nmr Structure Of The Complex Between Nck-2 Sh3 Domain
And Pinch-1 Lim4 Domain
Length = 71
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGD--WWLARSKATKQEGYIPSNYVAKL 56
+ LY + + T+E+L+F KGE +E++ + D WW ++ A Q G +P NYV L
Sbjct: 8 VVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKN-ARGQVGLVPKNYVVVL 64
>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
Length = 163
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEA 61
AL+D++ DEDL F+KG+ L+I + + WW A K+ G IP YV K + A
Sbjct: 6 ALFDFNGNDDEDLPFKKGDILKIRDKPEEQWWNAEDMDGKR-GMIPVPYVEKCRPSSA 62
>pdb|1UHC|A Chain A, Solution Structure Of Rsgi Ruh-002, A Sh3 Domain Of
Kiaa1010 Protein [homo Sapiens]
Length = 79
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEIL--NDTQGD--WWLARSKATKQEGYIPSNYVAKL 56
++ A+Y + AR +LS + L+IL D G+ WWLA K GY+PSNY+ K
Sbjct: 15 VYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKK--GYVPSNYIRKT 72
Query: 57 KS 58
+S
Sbjct: 73 ES 74
>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
pdb|4ESR|B Chain B, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
Length = 69
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAK 55
VALYDY A ++L+ +G+ + + DWW S QEGY P+N+VA
Sbjct: 10 VALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYG-SIGKGQEGYFPANHVAS 61
>pdb|2LJ1|A Chain A, The Third Sh3 Domain Of R85fl With Ataxin-7 Prr
Length = 64
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+ ALY Y + D++L R G+ ++++ W++ S+ TKQ G P NYV L
Sbjct: 9 YQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPL 63
>pdb|2CUC|A Chain A, Solution Structure Of The Sh3 Domain Of The Mouse
Hypothetical Protein Sh3rf2
Length = 70
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
+FVAL+ Y A E+L +KGE + +L Q W S T + G PS+YV
Sbjct: 9 MFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYV 61
>pdb|2YUQ|A Chain A, Solution Structure Of The Sh3 Domain Of Human Tyrosine-
Protein Kinase ItkTSK
Length = 85
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
+ +ALYDY ++L+ R+ E +L+ ++ WW + + EGY+PS+Y+ +
Sbjct: 21 VVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDR-NGHEGYVPSSYLVEKSPNN 79
Query: 61 AEPYDF 66
E Y++
Sbjct: 80 LETYEW 85
>pdb|2LJ0|A Chain A, The Third Sh3 Domain Of R85fl
Length = 65
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+ ALY Y + D++L R G+ ++++ W++ S+ TKQ G P NYV L
Sbjct: 9 YQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPL 63
>pdb|2YUP|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Vinexin
Length = 90
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
VA Y + + +LSFRKGEH+ ++ +W+ R T ++G P++YV
Sbjct: 21 VAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYV 71
>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter
Molecule 1 Stam-1 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4479e
Length = 72
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
A+YD++A D +L+F+ GE + +L+D+ +WW + + + G PSN+V
Sbjct: 22 AIYDFEAAEDNELTFKAGEIITVLDDSDPNWW--KGETHQGIGLFPSNFV 69
>pdb|2RF0|A Chain A, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|B Chain B, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|C Chain C, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|D Chain D, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
Length = 89
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 6/60 (10%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILND---TQGD--WWLARSKATKQEGYIPSNYVAK 55
++ A++DY+A DE+L+ R+G+ +++L+ GD WW + + + G PSNYVA
Sbjct: 31 VWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRV-GVFPSNYVAP 89
>pdb|2LMJ|A Chain A, Itk-Sh3
Length = 66
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAK 55
+ +ALYDY ++L+ R+ E +L+ ++ WW + + EGY+PS+Y+ +
Sbjct: 10 VVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDR-NGHEGYVPSSYLVE 63
>pdb|2A36|A Chain A, Solution Structure Of The N-Terminal Sh3 Domain Of Drk
pdb|2AZS|A Chain A, Nmr Structure Of The N-Terminal Sh3 Domain Of Drk
(Calculated Without Noe Restraints)
Length = 59
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 36/52 (69%), Gaps = 3/52 (5%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILN-DTQGDWWLARSKATKQEGYIPSNYV 53
+A +D+ A D++LSFRK + L+ILN + +W+ R++ +EG IPSNY+
Sbjct: 4 IAKHDFSATADDELSFRKTQILKILNMEDDSNWY--RAELDGKEGLIPSNYI 53
>pdb|1WXB|A Chain A, Solution Structure Of The Sh3 Domain From Human
Epidermal Growth Factor Receptor Pathway Substrate
8-Like Protein
Length = 68
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 5 LYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAK 55
LYD+ AR +LS K E LE+L D + WW RS+ + Q GY+P N + +
Sbjct: 13 LYDFTARNANELSVLKDEVLEVLEDGR-QWWKLRSR-SGQAGYVPCNILGE 61
>pdb|2CUD|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Src-Like Adopter Protein (Slap)
Length = 79
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLK 57
L DY + FR+GE L +++D +G WW A S +T +E YIP VA++
Sbjct: 20 LAVLSDYPSPDISPPIFRRGEKLRVISD-EGGWWKAISLSTGRESYIPGICVARVS 74
>pdb|2O2W|A Chain A, Extending Powder Diffraction To Proteins: Structure
Solution Of The Second Sh3 Domain From Ponsin
pdb|2O31|A Chain A, Crystal Structure Of The Second Sh3 Domain From Ponsin
pdb|2O9S|A Chain A, The Second Sh3 Domain From Ponsin
pdb|2O9V|A Chain A, The Second Sh3 Domain From Ponsin In Complex With The
Paxillin Proline Rich Region
Length = 67
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLK 57
+A ++++ T ++SFRKGE + +L +W+ R T ++G P YV +K
Sbjct: 10 IAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIK 64
>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|3GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|2GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|1GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|1GBR|A Chain A, Orientation Of Peptide Fragments From Sos Proteins Bound
To The N-Terminal Sh3 Domain Of Grb2 Determined By Nmr
Spectroscopy
Length = 74
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
+A YD+ A D++LSF++G+ L++LN+ W +++ ++G+IP NY+
Sbjct: 13 IAKYDFKATADDELSFKRGDILKVLNEECDQNWY-KAELNGKDGFIPKNYI 62
>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 59
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
ALYDYDA+T ++L+F++G+ + + WW + + G++P+NYV +
Sbjct: 9 ALYDYDAQTGDELTFKEGDTIIVHQKDPAGWW--EGELNGKRGWVPANYVQDI 59
>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|B Chain B, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|C Chain C, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|D Chain D, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 58
Score = 42.7 bits (99), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
ALYDYDA+T ++L+F++G+ + + WW + + G++P+NYV +
Sbjct: 8 ALYDYDAQTGDELTFKEGDTIIVHQKDPAGWW--EGELNGKRGWVPANYVQDI 58
>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 78
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEA 61
AL+D++ +EDL F+KG+ L I + + WW A K+ G IP YV K + A
Sbjct: 19 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR-GMIPVPYVEKYRPASA 75
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAK 55
+F ALY ++ RT ++L +G+ + I + + +WW SK + G IPSNYVA+
Sbjct: 16 VFRALYTFEPRTPDELYIEEGDIIYITDXSDTNWWKGTSKG--RTGLIPSNYVAE 68
>pdb|2EPD|A Chain A, Solution Structure Of Sh3 Domain In
Rho-Gtpase-Activating Protein 4
Length = 76
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
VA + Y RT ++LSFR+G+ L + DWW R + G IP Y+
Sbjct: 14 VACFAYTGRTAQELSFRRGDVLRLHERASSDWW--RGEHNGMRGLIPHKYI 62
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEA 61
AL+D++ +EDL F+KG+ L I + + WW A K+ G IP YV K + A
Sbjct: 139 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR-GMIPVPYVEKYRPASA 195
>pdb|1JEG|A Chain A, Solution Structure Of The Sh3 Domain From C-Terminal Src
Kinase Complexed With A Peptide From The Tyrosine
Phosphatase Pep
Length = 83
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQ-GDWWLARSKATKQEGYIPSNYVAKLKSIEA 61
+A Y++ ++DL F KG+ L I+ T+ +W+ A++K + EG IP+NYV K + ++A
Sbjct: 15 IAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGR-EGIIPANYVQKREGVKA 73
>pdb|2XMF|A Chain A, Myosin 1e Sh3
Length = 60
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
ALY YDA+ ++LSF + ++I+ + WW R + ++G P+NYV K+
Sbjct: 10 ALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRG--KQGLFPNNYVTKI 60
>pdb|3NMZ|D Chain D, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|C Chain C, Crytal Structure Of Apc Complexed With Asef
Length = 116
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEAEP 63
AL+D+ D++L F+ G+ +E+++ T +WW R EG+ P+++V +L+ + EP
Sbjct: 41 ALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGR--VADGEGWFPASFV-RLRVNQDEP 97
Query: 64 YD 65
D
Sbjct: 98 AD 99
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEA 61
AL+D++ +EDL F+KG+ L I + + WW A K+ G IP YV K + A
Sbjct: 139 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR-GMIPVPYVEKYRPASA 195
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEA 61
AL+D++ +EDL F+KG+ L I + + WW A K+ G IP YV K + A
Sbjct: 141 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR-GMIPVPYVEKYRPASA 197
>pdb|2CT3|A Chain A, Solution Structure Of The Sh3 Domain Of The Vinexin
Protein
Length = 70
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 33/57 (57%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
+ A+Y Y + +++L R+G+ ++++ W++ S+ T++ G P NYVA +
Sbjct: 10 YRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPVSG 66
>pdb|2ECZ|A Chain A, Solution Structure Of The Sh3 Domain Of Sorbin And Sh3
Domain-Containing Protein 1
Length = 70
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
+A ++++ T ++SFRKGE + +L +W+ R T ++G P YV
Sbjct: 11 IAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYV 61
>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal
Sh3 Domain Of C-Crk
pdb|1CKB|A Chain A, Structural Basis For The Specific Interaction Of Lysine-
Containing Proline-Rich Peptides With The N-Terminal
Sh3 Domain Of C-Crk
Length = 57
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAK 55
AL+D++ +EDL F+KG+ L I + + WW A K+ G IP YV K
Sbjct: 6 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR-GMIPVPYVEK 56
>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor
Length = 65
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAK 55
AL+D++ +EDL F+KG+ L I + + WW A K+ G IP YV K
Sbjct: 8 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR-GMIPVPYVEK 58
>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From
Oncogene Protein C-Crk
Length = 58
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAK 55
AL+D++ +EDL F+KG+ L I + + WW A K+ G IP YV K
Sbjct: 6 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR-GMIPVPYVEK 56
>pdb|1M3A|A Chain A, Solution Structure Of A Circular Form Of The Truncated
N- Terminal Sh3 Domain From Oncogene Protein C-Crk
Length = 57
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAK 55
AL+D++ +EDL F+KG+ L I + + WW A K+ G IP YV K
Sbjct: 5 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR-GMIPVPYVEK 55
>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 60
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAK 55
AL+D++ +EDL F+KG+ L I + + WW A K+ G IP YV K
Sbjct: 8 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR-GMIPVPYVEK 58
>pdb|1M3B|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal
Sh3 Domain (A134c, E135g, R191g Mutant) From Oncogene
Protein C-Crk
Length = 58
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAK 55
AL+D++ +EDL F+KG+ L I + + WW A K+ G IP YV K
Sbjct: 6 ALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKR-GMIPVPYVEK 56
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEA 61
+A Y++ ++DL F KG+ L I+ T+ W +EG IP+NYV K + ++A
Sbjct: 15 IAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGVKA 73
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEAEP 63
AL+D+ D++L F+ G+ +E+++ T +WW R EG+ P+++V +L+ + EP
Sbjct: 35 ALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGR--VADGEGWFPASFV-RLRVNQDEP 91
Query: 64 YD 65
D
Sbjct: 92 AD 93
>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain
(Minimized Average Structure)
pdb|1KFZ|A Chain A, Solution Structure Of C-Terminal Sem-5 Sh3 Domain
(Ensemble Of 16 Structures)
Length = 62
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
AL+D++ + +L+F++G+ + ++N +WW + + G PSNYVA S
Sbjct: 9 ALFDFNPQESGELAFKRGDVITLINKDDPNWW--EGQLNNRRGIFPSNYVAPYNS 61
>pdb|1CSK|A Chain A, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|B Chain B, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|C Chain C, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
pdb|1CSK|D Chain D, The Crystal Structure Of Human Csksh3: Structural
Diversity Near The Rt-Src And N-Src Loop
Length = 71
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQ-GDWWLARSKATKQEGYIPSNYVAKLKSI 59
+A Y++ ++DL F KG+ L I+ T+ +W+ A++K + EG IP+NYV K + +
Sbjct: 15 IAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGR-EGIIPANYVQKREGV 71
>pdb|2CSQ|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Rim- Binding Protein 2
Length = 97
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 9/73 (12%)
Query: 1 IFVALYDYDART--------DEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNY 52
IFVAL+DYD T +E+L F++G+ +++ D D + R + + G IP N
Sbjct: 19 IFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFY-RGETCARLGLIPCNM 77
Query: 53 VAKLKSIEAEPYD 65
V+++++ + E D
Sbjct: 78 VSEIQADDEEMMD 90
>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant
Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10
Structures
Length = 56
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
+A D+ A D++LSF++G+ L++LN+ W +++ ++G+IP NY+
Sbjct: 4 IAKVDFKATADDELSFKRGDILKVLNEESDQNWY-KAELNGKDGFIPKNYI 53
>pdb|2CT4|A Chain A, Solution Strutcure Of The Sh3 Domain Of The Cdc42-
Interacting Protein 4
Length = 70
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 31/51 (60%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
VA+Y ++ ++ +S +GE L ++ + +GD W + EGY+P++Y+
Sbjct: 11 VAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYL 61
>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Proline- Serine-Threonine Phosphatase-Interacting
Protein 1
Length = 69
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
+ ALYDY A+ ++L G+ LE++ + + WW Q G++P +Y+ KL
Sbjct: 11 YRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNG--QRGFVPGSYLEKLSG 65
>pdb|1S1N|A Chain A, Sh3 Domain Of Human Nephrocystin
Length = 68
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
++A+ D+ A+ DL+F+KGE L ++ WW+A+ A EG +P Y+
Sbjct: 13 YIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKD-AKGNEGLVPRTYL 63
>pdb|2K2M|A Chain A, Structural Basis Of Pxxdy Motif Recognition In Sh3
Binding
Length = 68
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 6 YDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSN 51
YD+ AR +LS ++ + LE+L+D++ WW R A QEGY+P N
Sbjct: 15 YDFQARNSSELSVKQRDVLEVLDDSR-KWWKVRDPAG-QEGYVPYN 58
>pdb|2ROL|A Chain A, Structural Basis Of Pxxdy Motif Recognition In Sh3
Binding
Length = 64
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 6 YDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSN 51
YD+ AR +LS ++ + LE+L+D++ WW R A QEGY+P N
Sbjct: 14 YDFQARNSSELSVKQRDVLEVLDDSR-KWWKVRDPAG-QEGYVPYN 57
>pdb|2RPN|A Chain A, A Crucial Role For High Intrinsic Specificity In The
Function Of Yeast Sh3 Domains
Length = 59
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVA 54
A YDYDA D +L+F + + + + DWWL + +G PSNYV+
Sbjct: 5 TAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 56
>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|3SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
Length = 60
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
AL+D++ + +L+F++G+ + ++N +WW + + G PSNYV S
Sbjct: 7 ALFDFNPQESGELAFKRGDVITLINKDDPNWW--EGQLNNRRGIFPSNYVCPYNS 59
>pdb|1WYX|A Chain A, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
pdb|1WYX|B Chain B, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
Length = 69
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEIL-NDTQG--DWWLARSKATKQEGYIPSNYVAKLKSI 59
ALYD A + ++LSFRKG+ + +L DTQG WWL ++G +P N + L +
Sbjct: 8 ALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHG--RQGIVPGNRLKILVGM 64
>pdb|1JO8|A Chain A, Structural Analysis Of The Yeast Actin Binding Protein
Abp1 Sh3 Domain
Length = 58
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVA 54
A YDYDA D +L+F + + + + DWWL + +G PSNYV+
Sbjct: 4 TAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 55
>pdb|2K3B|A Chain A, Seeing The Invisible: Structures Of Excited Protein
States By Relaxation Dispersion Nmr
Length = 62
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVA 54
A YDYDA D +L+F + + + + DWWL + +G PSNYV+
Sbjct: 8 TAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 59
>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef
Length = 482
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEAEP 63
AL+D+ D++L F+ G+ +E+ + T +WW R EG+ P+++V +L+ + EP
Sbjct: 72 ALWDHVTXDDQELGFKAGDVIEVXDATNREWWWGR--VADGEGWFPASFV-RLRVNQDEP 128
Query: 64 YD 65
D
Sbjct: 129 AD 130
>pdb|2EQI|A Chain A, Solution Structure Of The Sh3 Domain From Phospholipase
C, Gamma 2
Length = 69
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
ALYDY A+ ++L+F +G + ++ G WW T+ + Y PSNYV
Sbjct: 12 ALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKG-DYGTRIQQYFPSNYV 60
>pdb|2K79|A Chain A, Solution Structure Of The Binary Complex Between The Sh3
And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
pdb|2K7A|A Chain A, Ensemble Structures Of The Binary Complex Between The
Sh3 And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
Length = 63
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAK 55
+ +ALYDY ++L+ R E +L+ ++ WW + K EGY PS+Y+ +
Sbjct: 7 LVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDK-NGHEGYAPSSYLVE 60
>pdb|1AWJ|A Chain A, Intramolecular Itk-Proline Complex, Nmr, Minimized
Average Structure
Length = 77
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAK 55
+ +ALYDY ++L+ R E +L+ ++ WW + K EGY PS+Y+ +
Sbjct: 22 LVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDK-NGHEGYAPSSYLVE 75
>pdb|2RN8|A Chain A, Nmr Structure Note: Murine Itk Sh3 Domain
pdb|2RNA|A Chain A, Itk Sh3 Average Minimized
Length = 64
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAK 55
+ +ALYDY ++L+ R E +L+ ++ WW + K EGY PS+Y+ +
Sbjct: 7 LVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDK-NGHEGYAPSSYLVE 60
>pdb|2DL8|A Chain A, Solution Structure Of The Sh3 Domain Of Human Slit-Robo
Rho Gtpase-Activating Protein 2
Length = 72
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
+A +DY RT +LSF+KG L + DWW R +G IP Y+
Sbjct: 13 IAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGI--DGLIPHQYI 61
>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation
And Of Sequence Specificity In Sh3 Domains
pdb|1SEM|B Chain B, Structural Determinants Of Peptide-Binding Orientation
And Of Sequence Specificity In Sh3 Domains
Length = 58
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVA 54
AL+D++ + +L+F++G+ + ++N +WW + + G PSNYV
Sbjct: 7 ALFDFNPQESGELAFKRGDVITLINKDDPNWW--EGQLNNRRGIFPSNYVC 55
>pdb|1G2B|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular
Permutant, Cut At N47-D48
pdb|1TUD|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular
Permutant, Cut At N47-D48
Length = 62
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWW 35
+ +ALYDY ++ +++ +KG+ L +LN T DWW
Sbjct: 23 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWW 57
>pdb|1TUC|A Chain A, Alpha-Spectrin Src Homology 3 Domain, Circular
Permutant, Cut At S19-P20
Length = 63
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 15 DLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
+++ +KG+ L +LN T DWW + + ++G++P+ YV KL S
Sbjct: 5 EVTMKKGDILTLLNSTNKDWW--KVEVNDRQGFVPAAYVKKLDS 46
>pdb|2JMC|A Chain A, Chimer Between Spc-Sh3 And P41
Length = 77
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 10 ARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
A +++ +KG+ L +LN T DWW + + ++G++P+ YV KL S
Sbjct: 2 AMGPREVTMKKGDILTLLNSTNKDWW--KVEVNDRQGFVPAAYVKKLDS 48
>pdb|2KXD|A Chain A, The Structure Of Sh3-F2
Length = 73
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 15 DLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
+++ +KG+ L +LN T DWW + + ++G++P+ YV KL S
Sbjct: 15 EVTMKKGDILTLLNSTNKDWW--KVEVNDRQGFVPAAYVKKLDS 56
>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In
Complex With A Peptide Of Xirp2
Length = 64
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
A+YDY A+ ++++SFR G+++ + W + T + G +P+NY+
Sbjct: 11 AMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYI 60
>pdb|2X3W|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3X|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|E Chain E, Structure Of Mouse Syndapin I (Crystal Form 1)
Length = 60
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
ALYDYD + ++LSF+ G+ L L + W + Q G P+NYV
Sbjct: 8 ALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYV 57
>pdb|2GNC|A Chain A, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
pdb|2GNC|B Chain B, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
Length = 60
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVA 54
+A +DY R+ +LSF+KG L + + DWW R +G +P Y+
Sbjct: 10 IAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGI--DGLVPHQYIV 59
>pdb|1AOJ|A Chain A, The Sh3 Domain Of Eps8 Exists As A Novel Intertwined
Dimer
pdb|1AOJ|B Chain B, The Sh3 Domain Of Eps8 Exists As A Novel Intertwined
Dimer
pdb|1I07|A Chain A, Eps8 Sh3 Domain Intertwined Dimer
pdb|1I07|B Chain B, Eps8 Sh3 Domain Intertwined Dimer
pdb|1I0C|A Chain A, Eps8 Sh3 Closed Monomer
pdb|1I0C|B Chain B, Eps8 Sh3 Closed Monomer
Length = 60
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 6 YDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
YD+ AR +LS K + LEIL+D + WW R+ A+ G++P+N + +++ E
Sbjct: 8 YDFVARNSSELSVMKDDVLEILDDRR-QWWKVRN-ASGDSGFVPNNILDIMRTPE 60
>pdb|1HSQ|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
pdb|2HSP|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
Length = 71
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEA 61
AL+DY A+ +++L+F K ++ + +G WW KQ + PSNYV ++ + E
Sbjct: 11 ALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQL-WFPSNYVEEMVNPEG 67
>pdb|1WXU|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse
Peroxisomal Biogenesis Factor 13
Length = 93
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEI-LNDTQGD--WWLARSKATKQEGYIPSNYVAKL---- 56
A YD+ A +DE++SFR G+ L + L + Q WL S + G IP+NYV L
Sbjct: 22 AEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILGKRR 81
Query: 57 --KSIEAEP 63
K+IE+ P
Sbjct: 82 GRKTIESGP 90
>pdb|2D8H|A Chain A, Solution Structure Of The Sh3 Domain Of Hypothetical
Protein Sh3yl1
Length = 80
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILN--DTQGDWWLARSKATKQEGYIPSNYVA 54
ALY ++ + DL+F+ G+ + +++ D+ DWW K Q G P+NYV
Sbjct: 21 TALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWW--EGKLRGQTGIFPANYVT 72
>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
pdb|2AK5|B Chain B, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
Length = 64
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLK 57
+ A +++ +++LSF KG+ + + +G WW + G+ PSNYV ++K
Sbjct: 8 VVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNG--RTGWFPSNYVREIK 62
>pdb|1UFF|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Intersectin2 (Kiaa1256)
Length = 93
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGD-WWLARSKATKQEGYIPSNYVAKLKSIEAE 62
ALY ++AR +++SF G+ +++ T G+ WL S G+ P NYV K+ S E E
Sbjct: 10 ALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGS-FQGNFGWFPCNYVEKMPSSENE 68
>pdb|1OV3|A Chain A, Structure Of The P22phox-P47phox Complex
pdb|1OV3|B Chain B, Structure Of The P22phox-P47phox Complex
Length = 138
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
A+ DY+ + +++ G+ +E++ ++ WW + KA + G+IP++++ L S
Sbjct: 16 AIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKR--GWIPASFLEPLDS 68
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAK 55
+VA+ Y A +++S +GE +E+++ WW+ R GY PS Y+ K
Sbjct: 84 YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVT--GYFPSMYLQK 135
>pdb|2J6F|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog) Bound
To Cbl-B Peptide
pdb|2J6K|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|B Chain B, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|C Chain C, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|D Chain D, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|E Chain E, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|F Chain F, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|G Chain G, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|H Chain H, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|I Chain I, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|J Chain J, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|K Chain K, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|L Chain L, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6O|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal
Sh3 Domain. Cms:cd2 Heterotrimer
pdb|2J7I|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal
Sh3 Domain. Cms:cd2 Heterodimer
pdb|2J7I|B Chain B, Atypical Polyproline Recognition By The Cms N-Terminal
Sh3 Domain. Cms:cd2 Heterodimer
Length = 62
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLK 57
++ YDYDA D++L+ R GE + + Q + WL + + G P N+V ++K
Sbjct: 4 YIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLE-GELNGRRGMFPDNFVKEIK 58
>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From
Alpha- Pak
Length = 65
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
+ A +++ +++LSF KG+ + + +G WW + G+ PSNYV ++K+
Sbjct: 10 VVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWW--EGTLNGRTGWFPSNYVREVKA 65
>pdb|1WLP|B Chain B, Solution Structure Of The P22phox-P47phox Complex
Length = 138
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
+ A+ DY+ + +++ G+ +E++ ++ WW + KA + G+IP++++ L S
Sbjct: 13 YRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKR--GWIPASFLEPLDS 67
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAK 55
+VA+ Y A +++S +GE +E+++ WW+ R GY PS Y+ K
Sbjct: 83 YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVT--GYFPSMYLQK 134
>pdb|1UHF|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human
Intersectin 2(Kiaa1256)
Length = 69
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
++ALY Y + DL+F +GE + ++ G+WW + G PSNYV
Sbjct: 11 YIALYPYSSVEPGDLTFTEGEEI-LVTQKDGEWWTG--SIGDRSGIFPSNYV 59
>pdb|2KRM|A Chain A, Rdc Refined Solution Structure Of The First Sh3 Domain
Of Cd2ap
Length = 57
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLK 57
++ YDYDA D++L+ R GE + + Q + WL + + G P N+V ++K
Sbjct: 3 YIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWL-EGELNGRRGMFPDNFVKEIK 57
>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
pdb|3HAJ|B Chain B, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
Length = 486
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLK 57
ALYDY+ + ++LSF+ G+ L + D W Q G P+NYV ++
Sbjct: 433 ALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEAIQ 486
>pdb|1YWO|A Chain A, Phospholipase Cgamma1 Sh3 In Complex With A Slp-76 Motif
pdb|1YWP|A Chain A, Phospholipase Cgamma1 Sh3
Length = 64
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
AL+DY A+ +++L+F K ++ + G WW KQ + PSNYV ++
Sbjct: 11 ALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQL-WFPSNYVEEM 62
>pdb|1Z9Z|A Chain A, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|1Z9Z|B Chain B, Crystal Structure Of Yeast Sla1 Sh3 Domain 3
pdb|2V1Q|A Chain A, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain
3
pdb|2V1Q|B Chain B, Atomic-Resolution Structure Of The Yeast Sla1 Sh3 Domain
3
Length = 60
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQG-DWWLARSKATKQEGYIPSNYV 53
+ YD+ A + ++L+ + G+ + IL+D + DWW+ + + + G +P+ ++
Sbjct: 6 IVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFI 57
>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3
Domain
Length = 73
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSI 59
ALYD++ D +L FR+G+ + + N +W+ Q G+ P +YV L +
Sbjct: 18 ALYDFEPENDGELGFREGDLITLTNQIDENWY--EGXLHGQSGFFPLSYVQVLVPL 71
>pdb|2JT4|A Chain A, Solution Structure Of The Sla1 Sh3-3-Ubiquitin Complex
Length = 71
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQG-DWWLARSKATKQEGYIPSNYVAKLK 57
+ YD+ A + ++L+ + G+ + IL+D + DWW+ + + + G +P+ ++ ++
Sbjct: 10 IVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVR 65
>pdb|1Y0M|A Chain A, Crystal Structure Of Of The Sh3 Domain Of Phospholipase
C Gamma-1
Length = 61
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
AL+DY A+ +++L+F K ++ + G WW KQ + PSNYV ++
Sbjct: 8 ALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQL-WFPSNYVEEM 59
>pdb|1NG2|A Chain A, Structure Of Autoinhibited P47phox
Length = 193
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
+ A+ DY+ + +++ G+ +E++ ++ WW + KA + G+IP++++ L S
Sbjct: 14 YRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKR--GWIPASFLEPLDS 68
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAK 55
+VA+ Y A +++S +GE +E+++ WW+ R GY PS Y+ K
Sbjct: 84 YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVT--GYFPSMYLQK 135
>pdb|2DL7|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Kiaa0769 Protein
Length = 73
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILN-DTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
ALYDY+ +TD++LSF +G + ILN + Q D + + G PS V +L S
Sbjct: 13 ALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSS 68
>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement
Tag (Inset) Using A Sortase-Mediated Protein Ligation
Method
Length = 142
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILN-DTQGDWWLARSKATKQEGYIPSNYV 53
A YD+ AR +LS ++G+ ++ILN Q WW R + + G+ PSNYV
Sbjct: 10 ARYDFCARDRSELSLKEGDIIKILNKKGQQGWW--RGEIYGRIGWFPSNYV 58
>pdb|2VKN|A Chain A, Yeast Sho1 Sh3 Domain Complexed With A Peptide From Pbs2
Length = 70
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 15 DLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
++SF + E L++ +D +G WW AR +A + G IPSNYV + E
Sbjct: 23 EISFEQNEILQV-SDIEGRWWKAR-RANGETGIIPSNYVQLIDGPE 66
>pdb|1YNZ|A Chain A, Sh3 Domain Of Yeast Pin3
pdb|1ZX6|A Chain A, High-Resolution Crystal Structure Of Yeast Pin3 Sh3
Domain
Length = 58
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
ALY +D + D DL + G+ +++L +W+ + + G P+NYV
Sbjct: 7 ALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWY--KGSCNGRTGIFPANYV 54
>pdb|1UEC|A Chain A, Crystal Structure Of Autoinhibited Form Of Tandem Sh3
Domain Of P47phox
Length = 193
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
+ A+ DY+ + +++ G+ +E++ ++ WW + KA + G+IP++++ L S
Sbjct: 14 YRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKR--GWIPASFLEPLDS 68
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAK 55
+VA+ Y A +++S +GE +E+++ WW+ R GY PS Y+ K
Sbjct: 84 YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVT--GYFPSMYLQK 135
>pdb|1ARK|A Chain A, Sh3 Domain From Human Nebulin, Nmr, 15 Structures
pdb|1NEB|A Chain A, Sh3 Domain From Human Nebulin, Nmr, Minimized Average
Structure
Length = 60
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
IF A+YDY A +++SF+ G+ + + W + T + G +P+NYV
Sbjct: 5 IFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYV 57
>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin
Length = 79
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
ALY + AR D++L+ KG+ + I + WW K G+ P+ YV +L S
Sbjct: 12 ALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKK--GHFPAAYVEELPS 64
>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE
Nucleotide Exchange Factor(Gef) 6
Length = 76
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
I A +++ +++LS KG+ + + +G WW + G+ PSNYV ++KS E
Sbjct: 12 IVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWW--EGTLNGRTGWFPSNYVREIKSSE 69
>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In
Complex With A High Affinity Peptide From Pak2
pdb|2DF6|B Chain B, Crystal Structure Of The Sh3 Domain Of Betapix In
Complex With A High Affinity Peptide From Pak2
pdb|2P4R|A Chain A, Structural Basis For A Novel Interaction Between Aip4
And Beta-pix
pdb|2G6F|X Chain X, Crystal Structure Of The Sh3 Domain Of Betapix In
Complex With A High Affinity Peptide From Pak2
Length = 59
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+ A +++ +++LSF KG+ + + +G WW + G+ PSNYV ++
Sbjct: 6 VVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNG--RTGWFPSNYVREI 59
>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting
Exchange Factor
pdb|2ESW|B Chain B, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting
Exchange Factor
Length = 61
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+ A +++ +++LSF KG+ + + +G WW + G+ PSNYV ++
Sbjct: 8 VVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNG--RTGWFPSNYVREI 61
>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|3IQL|B Chain B, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|2KNB|B Chain B, Solution Nmr Structure Of The Parkin Ubl Domain In
Complex With The Endophilin-A1 Sh3 Domain
Length = 71
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSI 59
ALYD++ + +L F++G+ + + N +W+ Q G+ P NYV L ++
Sbjct: 16 ALYDFEPENEGELGFKEGDIITLTNQIDENWY--EGMLHGQSGFFPINYVEILVAL 69
>pdb|2ENM|A Chain A, Solution Structure Of The Sh3 Domain From Mouse Sorting
Nexin-9
Length = 77
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 5 LYDYDART-DEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEAEP 63
+YD+ A + +L+ +GE + + N G WL ++G +P++YV L + +P
Sbjct: 15 MYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEILPNDGKDP 74
Query: 64 Y 64
+
Sbjct: 75 F 75
>pdb|2V1R|A Chain A, Yeast Pex13 Sh3 Domain Complexed With A Peptide From
Pex14 At 2.1 A Resolution
pdb|2V1R|B Chain B, Yeast Pex13 Sh3 Domain Complexed With A Peptide From
Pex14 At 2.1 A Resolution
Length = 80
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 4 ALYDYDARTDE-DLSFRKGEHLEILN--DTQG---DWWLARSKATKQEGYIPSNYVAKLK 57
ALYD+ E +++ +KG+ + IL+ D G DWW R+K GYIP NY+ +K
Sbjct: 19 ALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTK-NGNIGYIPYNYIEIIK 77
>pdb|2DM1|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Protein Vav-2
Length = 73
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGD--WWLARSKATKQEGYIPSNYVAKLKSIE 60
VA Y++ AR +LS R+G+ + I + GD WW + + + G+ PS YV + + I+
Sbjct: 11 VARYNFAARDMRELSLREGDVVRIYSRIGGDQGWW--KGETNGRIGWFPSTYVEE-EGIQ 67
Query: 61 AEP 63
+ P
Sbjct: 68 SGP 70
>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment
Of Psd-95
pdb|1JXO|A Chain A, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
pdb|1JXO|B Chain B, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
Length = 301
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 9/56 (16%)
Query: 4 ALYDYDARTD-----EDLSFRKGEHLEILNDTQGDWWLARSKATKQE----GYIPS 50
AL+DYD D + LSFR G+ L +++ +WW AR + E G+IPS
Sbjct: 12 ALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPS 67
>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95
Length = 295
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 9/56 (16%)
Query: 4 ALYDYDARTD-----EDLSFRKGEHLEILNDTQGDWWLARSKATKQE----GYIPS 50
AL+DYD D + LSFR G+ L +++ +WW AR + E G+IPS
Sbjct: 6 ALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPS 61
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 9/56 (16%)
Query: 4 ALYDYDARTD-----EDLSFRKGEHLEILNDTQGDWWLARSKATKQE----GYIPS 50
AL+DYD D + LSFR G+ L +++ +WW AR + E G+IPS
Sbjct: 432 ALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPS 487
>pdb|2YSQ|A Chain A, Solution Structure Of The Sh3 Domain From Rho Guanine
Nucleotide Exchange Factor 9
Length = 81
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
A++D+ + +L+F+ G+ +++L+ + DWW + +EG+ P+++V
Sbjct: 15 AVWDHVTMANRELAFKAGDVIKVLDASNKDWWWG--QIDDEEGWFPASFV 62
>pdb|1JQQ|A Chain A, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|B Chain B, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|C Chain C, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1JQQ|D Chain D, Crystal Structure Of Pex13p(301-386) Sh3 Domain
pdb|1N5Z|A Chain A, Complex Structure Of Pex13p Sh3 Domain With A Peptide Of
Pex14p
pdb|1N5Z|B Chain B, Complex Structure Of Pex13p Sh3 Domain With A Peptide Of
Pex14p
Length = 92
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 4 ALYDYDARTDE-DLSFRKGEHLEILN--DTQG---DWWLARSKATKQEGYIPSNYVAKLK 57
ALYD+ E +++ +KG+ + IL+ D G DWW R+K GYIP NY+ +K
Sbjct: 19 ALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTK-NGNIGYIPYNYIEIIK 77
>pdb|2EGC|A Chain A, Solution Structure Of The Fifth Sh3 Domain From Human
Kiaa0418 Protein
Length = 75
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLAR--SKATKQEGYIPSNYVAKLKS 58
++V++ DY+ +E F++G +E+L WW + +G++PSNY+ K S
Sbjct: 12 VYVSIADYEG-DEETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKNS 70
>pdb|2FRW|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Adaptor Protein Nck2
Length = 57
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 6 YDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
+ Y A +++LS KG + ++ WW R Q G+ PSNYV
Sbjct: 7 FAYVAEREDELSLVKGSRVTVMEKCSDGWW--RGSYNGQIGWFPSNYV 52
>pdb|3I35|A Chain A, Human Sh3 Domain Of Protein Lasp1
Length = 60
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+ A+YDY A ++++SF+ G+ + + W + T G +P+NYV +
Sbjct: 6 YRAVYDYSAADEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVEAI 60
>pdb|2JS0|A Chain A, Solution Structure Of Second Sh3 Domain Of Adaptor Nck
Length = 61
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 6 YDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAK 55
++Y A +++LS KG + ++ WW R Q G+ PSNYV +
Sbjct: 11 FNYMAEREDELSLIKGTKVIVMEKCSDGWW--RGSYNGQVGWFPSNYVTE 58
>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap
pdb|2KRO|A Chain A, Rdc Refined High Resolution Structure Of The Third Sh3
Domain Of Cd2ap
Length = 64
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGD--WWLARSKATKQEGYIPSNYVAKL 56
L+ Y +++L+FR+GE + +++ G+ WW + + +EG P N+ ++
Sbjct: 11 TLFPYTGTNEDELTFREGEIIHLISKETGEAGWW--KGELNGKEGVFPDNFAVQI 63
>pdb|2DNU|A Chain A, Solution Structure Of Rsgi Ruh-061, A Sh3 Domain From
Human
Length = 71
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLK 57
+V + Y +++ +++ F KG +E++ WW R +EG+ P++Y+ K K
Sbjct: 11 YVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIR--YLGKEGWAPASYLKKAK 64
>pdb|3UAT|A Chain A, Guanylate Kinase Domains Of The Maguk Family Scaffold
Proteins As Specific Phospho-Protein Binding Modules
Length = 296
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 9/56 (16%)
Query: 4 ALYDYDARTD-----EDLSFRKGEHLEILNDTQGDWWLARSKATKQE----GYIPS 50
AL+DYD D + L+F+ G+ L ++N + +WW AR E G IPS
Sbjct: 16 ALFDYDKTKDSGLPSQGLNFKFGDILHVINASDDEWWQARQVTPDGESDEVGVIPS 71
>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
pdb|2BZ8|B Chain B, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
Length = 58
Score = 34.3 bits (77), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLK 57
+ +DY A+ D++L+ GE + + G WW + + G P N+V ++K
Sbjct: 5 IVEFDYQAQHDDELTISVGEIITNIRKEDGGWW--EGQINGRRGLFPDNFVREIK 57
>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|B Chain B, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|C Chain C, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|D Chain D, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
Length = 66
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 3 VALYDYDARTDEDLSFRKGE---HLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
VALYDY A D+++SF + ++E+++D WW R + G P+NYV
Sbjct: 14 VALYDYQAAGDDEISFDPDDIITNIEMIDDG---WW--RGVCKGRYGLFPANYV 62
>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src
Substrate Cortactin
Length = 79
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 3 VALYDYDARTDEDLSFRKGE---HLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
VALYDY A D+++SF + ++E+++D WW R + G P+NYV
Sbjct: 21 VALYDYQAAGDDEISFDPDDIITNIEMIDDG---WW--RGVCKGRYGLFPANYV 69
>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3-
Containing Grb2-Like Protein 2
Length = 73
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSI 59
ALYD++ + +L F++G+ + + N +W+ G+ P NYV L ++
Sbjct: 12 ALYDFEPENEGELGFKEGDIITLTNQIDENWY--EGMLHGHSGFFPINYVEILVAL 65
>pdb|4IIM|A Chain A, Crystal Structure Of The Second Sh3 Domain Of Itsn1
Bound With A Synthetic Peptide
pdb|4IIM|B Chain B, Crystal Structure Of The Second Sh3 Domain Of Itsn1
Bound With A Synthetic Peptide
Length = 70
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEA 61
ALY + A+ D L+F K + + +L + Q WW + Q+G+ P +YV KL S A
Sbjct: 17 ALYPWRAKKDNHLNFNKNDVITVL-EQQDMWWFGEVQG--QKGWFPKSYV-KLISAAA 70
>pdb|2CUB|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck1
Length = 88
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 6 YDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAK 55
++Y A +++LS KG + ++ WW R Q G+ PSNYV +
Sbjct: 24 FNYMAEREDELSLIKGTKVIVMEKCSDGWW--RGSYNGQVGWFPSNYVTE 71
>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A
Hetero- Trimericcortactin:arg:lysozyme Complex
Length = 65
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 3 VALYDYDARTDEDLSFRKGE---HLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
+ALYDY A D+++SF + ++E+++D WW R + G P+NYV
Sbjct: 13 IALYDYQAAGDDEISFDPDDIITNIEMIDDG---WW--RGVCKGRYGLFPANYV 61
>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3
Length = 68
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
LYD++ +L F++G+ + + N +W+ + G+ P NYV + +E
Sbjct: 8 GLYDFEPENQGELGFKEGDIITLTNQIDENWY--EGMIHGESGFFPINYVEVIVPLE 62
>pdb|2M0Y|A Chain A, Solution Structure Of The Sh3 Domain Of Dock180
Length = 74
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARS-KATKQEGYIPSNYV 53
VA Y+YDAR ++LS + G+ + IL +G W+ + + ++G P++Y+
Sbjct: 15 VAFYNYDARGADELSLQIGDTVHILETYEG-WYRGYTLRKKSKKGIFPASYI 65
>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of
Cd2ap
Length = 60
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLK 57
L+DY + +++L G+ ++++ + + WW + G PSN+V +L+
Sbjct: 9 VLFDYSPQNEDELELIVGDVIDVIEEVEEGWW--SGTLNNKLGLFPSNFVKELE 60
>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins
Length = 292
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query: 4 ALYDYDARTDEDLS-----FRKGEHLEILNDTQGDWWLARS----KATKQEGYIPS 50
AL+DYD D+ L F+ G+ L + N + +WW AR +Q G +PS
Sbjct: 10 ALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPS 65
>pdb|2RQT|A Chain A, Solution Structure Of The Human Ddef1 Sh3 Domain
pdb|2RQU|A Chain A, Solution Structure Of The Complex Between The Ddef1 Sh3
Domain And The Apc Samp1 Motif
Length = 61
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKAT-KQEGYIPSNYVAKL 56
+YD A D++L+F +GE + + + +WW+ + +++G P ++V L
Sbjct: 6 TIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHIL 59
>pdb|2LCS|A Chain A, Yeast Nbp2p Sh3 Domain In Complex With A Peptide From
Ste20p
Length = 73
Score = 32.3 bits (72), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 30/55 (54%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLK 57
VALYD++ D +L +G+ + I W +A +++ + G +P +V+ ++
Sbjct: 9 VALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQ 63
>pdb|1K4U|S Chain S, Solution Structure Of The C-Terminal Sh3 Domain Of
P67phox Complexed With The C-Terminal Tail Region Of
P47phox
Length = 62
Score = 32.3 bits (72), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
AL+ Y+A EDL F++G+ + +L+ +W SK + G P +V
Sbjct: 10 ALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKG--KVGIFPKVFV 57
>pdb|2DL5|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Kiaa0769 Protein
Length = 78
Score = 32.3 bits (72), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
+Y Y A ++L+ + E LE++ D + W+ Q GY+P Y+
Sbjct: 18 VVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYL 67
>pdb|1YN8|A Chain A, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|B Chain B, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|C Chain C, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|D Chain D, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|E Chain E, Sh3 Domain Of Yeast Nbp2
pdb|1YN8|F Chain F, Sh3 Domain Of Yeast Nbp2
Length = 59
Score = 32.3 bits (72), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 30/55 (54%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLK 57
VALYD++ D +L +G+ + I W +A +++ + G +P +V+ ++
Sbjct: 5 VALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQ 59
>pdb|2BTT|A Chain A, Nmr Structure Of Myo3-Sh3 Domain From Myosin-Type I From
S. Cerevisiae
Length = 69
Score = 32.0 bits (71), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 2 FVALYDYDAR-TDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLK 57
F A YD+ + +L +KG+ + I D W LA+ +EG++P+ Y+ K
Sbjct: 5 FEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYK 61
>pdb|1RUW|A Chain A, Crystal Structure Of The Sh3 Domain From S. Cerevisiae
Myo3
Length = 69
Score = 32.0 bits (71), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 2 FVALYDYDAR-TDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLK 57
F A YD+ + +L +KG+ + I D W LA+ +EG++P+ Y+ K
Sbjct: 5 FEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYK 61
>pdb|2ED1|A Chain A, Solution Structure Of The Sh3 Domain Of 130 Kda
Phosphatidylinositol 4,5-Biphosphate-Dependent Arf1
Gtpase- Activating Protein
Length = 76
Score = 32.0 bits (71), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKA-TKQEGYIPSNYVAKL 56
+YD A D++L+F +GE + + + +WW+ + +++G P ++V L
Sbjct: 15 TIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHIL 68
>pdb|1VA7|A Chain A, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|B Chain B, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|C Chain C, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|D Chain D, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
Length = 70
Score = 32.0 bits (71), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 2 FVALYDYDAR-TDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLK 57
F A YD+ + +L +KG+ + I D W LA+ +EG++P+ Y+ K
Sbjct: 6 FEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYK 62
>pdb|1UGV|A Chain A, Solution Structure Of The Sh3 Domain Of Human
Olygophrein-1 Like Protein (Kiaa0621)
Length = 72
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
ALY A D +LSF G + ++ +Q WL + G IP NYV
Sbjct: 15 ALYACKAEHDSELSFTAGTVFDNVHPSQEPGWL-EGTLNGKTGLIPENYV 63
>pdb|2KYM|A Chain A, Solution Structure Of The Bem1p Sh3-Ci Domain From
L.Elongisporus In Complex With Ste20p Peptide
Length = 120
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARS-KATKQEGYIPSNYV 53
V LY++ A D++L GE+L I +W++A+ G +P +YV
Sbjct: 7 VTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYV 58
>pdb|2EKH|A Chain A, Solution Structures Of The Sh3 Domain Of Human Kiaa0418
Length = 80
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
++ Y D ++SF G +++L + WW R + EG+ PS+Y+
Sbjct: 11 YMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVR--FGELEGWAPSHYL 60
>pdb|2CSI|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Rim-
Binding Protein 2
Length = 76
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 2 FVALYDYDAR-------TDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVA 54
VALYDYD R + +L+F G+ + + + D + + Q+G +PSN++
Sbjct: 10 MVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFY-YGELNGQKGLVPSNFLE 68
Query: 55 KLKS 58
++
Sbjct: 69 EVSG 72
>pdb|1V1C|A Chain A, Solution Structure Of The Sh3 Domain Of Obscurin
Length = 71
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 1 IFVALYDYDARTDED--LSFRKGEHLEILNDTQGDWWLARSKATK----QEGYIPSNYV 53
I+V DY E ++ R+G+++E+L+ WL R+K TK ++G++ Y+
Sbjct: 7 IYVVTADYLPLGAEQDAITLREGQYVEVLDAAHPLRWLVRTKPTKSSPSRQGWVSPAYL 65
>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3
Domain From Human Cd2ap (Cms) In Complex With A
Proline-Rich Peptide From Human Rin3
Length = 65
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLK 57
L++Y + +++L + G+ ++I + + WW + G PSN+V +L+
Sbjct: 12 VLFEYIPQNEDELELKVGDIIDINEEVEEGWW--SGTLNNKLGLFPSNFVKELE 63
>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2
(Abelson Interactor 2)
Length = 78
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
VA+YDY +++LSF++G + ++ W+ G P NYV +
Sbjct: 21 VAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVT--GLFPGNYVESISG 74
>pdb|1YP5|A Chain A, Yeast Myo5 Sh3 Domain, Tetragonal Crystal Form
pdb|1ZUY|A Chain A, High-Resolution Structure Of Yeast Myo5 Sh3 Domain
pdb|1ZUY|B Chain B, High-Resolution Structure Of Yeast Myo5 Sh3 Domain
Length = 58
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 1 IFVALYDYDAR-TDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
+F A YD+ + +L +KG+ + I + W L + +EG++P+ Y+
Sbjct: 2 MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYM 55
>pdb|2RQV|A Chain A, Solution Structure Of Sh3ci Domain Of Bem1p
Length = 108
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKA-TKQEGYIPSNYVAKL 56
+ LYD+ A ++L+ GE+L I +W++A+ G +P +V+ +
Sbjct: 9 IVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSII 63
>pdb|2RQW|A Chain A, Solution Structure Of Bem1p Sh3ci Domain Complexed With
Ste20p-Prr Peptide
Length = 105
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKA-TKQEGYIPSNYVAKL 56
+ LYD+ A ++L+ GE+L I +W++A+ G +P +V+ +
Sbjct: 6 IVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSII 60
>pdb|1ZUU|A Chain A, Crystal Structure Of The Yeast Bzz1 First Sh3 Domain At
0.97-A Resolution
Length = 58
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEIL-NDTQGDWWLARSKATKQEGYIPSNYV 53
LY Y + D++++ G+ + ++ DT W + T + G +P+ Y+
Sbjct: 6 VLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYI 56
>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms
Protein
Length = 65
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
L++Y + +++L + G+ ++I + + WW + G PSN+V
Sbjct: 6 VLFEYIPQNEDELELKVGDIIDINEEVEEGWW--SGTLNNKLGLFPSNFV 53
>pdb|1W6X|A Chain A, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W6X|B Chain B, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W70|A Chain A, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
pdb|1W70|B Chain B, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
Length = 60
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLK 57
AL+D+ + +L+F+ G+ + +L+ DW + G P ++V LK
Sbjct: 9 ALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGA--TGIFPLSFVKILK 60
>pdb|1Z9Q|A Chain A, Solution Structure Of Sh3 Domain Of P40phox
Length = 79
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEAE 62
AL+D+ + +L+F+ G+ + +L+ DW + G P ++V LK E
Sbjct: 23 ALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGAT--GIFPLSFVKILKDFPEE 79
>pdb|2YUO|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Run And
Tbc1 Domain Containing 3
Length = 78
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
AL D++ D++L FRK + + I++ W+ + G+ P+ +V L
Sbjct: 12 ALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLR--GWFPAKFVEVL 62
>pdb|2A28|A Chain A, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|B Chain B, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|C Chain C, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|D Chain D, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
Length = 54
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
A+Y Y+A+ D+++S G+ + ++ G W + +G P++Y
Sbjct: 5 AIYAYEAQGDDEISIDPGDIITVIRGDDGSGW-TYGECDGLKGLFPTSYC 53
>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox)
pdb|2DYB|B Chain B, The Crystal Structure Of Human P40(Phox)
Length = 341
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEAE 62
AL+D+ + +L+F+ G+ + +L+ DW + G P ++V LK E
Sbjct: 179 ALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGAT--GIFPLSFVKILKDFPEE 235
>pdb|1X43|A Chain A, Solution Structure Of The Sh3 Domain Of Endophilin B1
(Sh3g1b1)
Length = 81
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILN--DTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
LYDYDA +LS E + + + DW + + Q+G +P Y+ L S
Sbjct: 22 VLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMG--ERGNQKGKVPITYLELLNS 76
>pdb|1SPK|A Chain A, Solution Structure Of Rsgi Ruh-010, An Sh3 Domain From
Mouse Cdna
Length = 72
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 16 LSFRKGEHLEILNDTQGDWWL-ARSKATKQEGYIPSNYVAKL 56
LSF +G+ L +L + D WL TK G+ PS+Y L
Sbjct: 25 LSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLL 66
>pdb|1K1Z|A Chain A, Solution Structure Of N-Terminal Sh3 Domain Mutant(P33g)
Of Murine Vav
Length = 78
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 16 LSFRKGEHLEILN-DTQGDWWLARSKATKQEGYIPSNYV 53
L G+ +E+ + + +WW R+ AT + G+ P N V
Sbjct: 35 LRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRV 73
>pdb|2GTJ|A Chain A, Reduced Form Of Adap Hsh3-N-Domain
pdb|2GTO|A Chain A, Oxidized Form Of Adap Hsh3-N
Length = 96
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 15 DLSFRKGEHLEI--LNDTQGDWWLARSKATKQEGYIPSNYV 53
+LSF++GE +EI + D WL R+ A GYI + V
Sbjct: 43 ELSFKQGEQIEIIRITDNPEGKWLGRT-ARGSYGYIKTTAV 82
>pdb|1GCP|A Chain A, Crystal Structure Of Vav Sh3 Domain
pdb|1GCP|B Chain B, Crystal Structure Of Vav Sh3 Domain
pdb|1GCP|C Chain C, Crystal Structure Of Vav Sh3 Domain
pdb|1GCP|D Chain D, Crystal Structure Of Vav Sh3 Domain
pdb|1GCQ|C Chain C, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 70
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 16 LSFRKGEHLEILN-DTQGDWWLARSKATKQEGYIPSNYV 53
L G+ +E+ + + +WW R+ AT + G+ P N V
Sbjct: 27 LRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRV 65
>pdb|1TG0|A Chain A, 0.97-A Structure Of The Sh3 Domain Of Bbc1
pdb|1ZUK|A Chain A, Yeast Bbc1 Sh3 Domain Complexed With A Peptide From
Las17
pdb|1ZUK|B Chain B, Yeast Bbc1 Sh3 Domain Complexed With A Peptide From
Las17
Length = 68
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLAR---SKATKQEGYIPSNYVA 54
VA + Y + ++DL+F K + + + + +W+ S EG P ++VA
Sbjct: 11 VAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVA 65
>pdb|3TSW|B Chain B, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
Length = 194
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 6 YDYDARTDEDLSFRKGEHLEIL----NDTQGDWWLARSKATKQE---GYIPS-NYVAKLK 57
++Y+ + LSF KGE ++ N G W R +E G IP+ N +L
Sbjct: 106 FEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLA 165
Query: 58 SIEAEPYDFKKSF 70
S++ Y K+F
Sbjct: 166 SVQ---YTLPKTF 175
>pdb|1WDX|A Chain A, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|B Chain B, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|C Chain C, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
pdb|1WDX|D Chain D, Yeast Bbc1 Sh3 Domain, Triclinic Crystal Form
Length = 69
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLAR---SKATKQEGYIPSNYVA 54
VA + Y + ++DL+F K + + + + +W+ S EG P ++VA
Sbjct: 12 VAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVA 66
>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin And Its Interaction With The Peptides From
Vinculin
Length = 65
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 6 YDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+D+ A++ ++L+ +KG+ + I + +W + + G P+NYV L
Sbjct: 8 FDFQAQSPKELTLQKGDIVYIHKEVDKNWL--EGEHHGRLGIFPANYVEVL 56
>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin
Length = 68
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 6 YDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+D+ A++ ++L+ +KG+ + I + +W + G P+NYV L
Sbjct: 14 FDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHG--RLGIFPANYVEVL 62
>pdb|1T3L|A Chain A, Structural Analysis Of The Voltage-Dependent Calcium
Channel Beta Subunit Functional Core In Complex With
Alpha1 Interaction Domain
pdb|1T3S|A Chain A, Structural Analysis Of The Voltage-Dependent Calcium
Channel Beta Subunit Functional Core
Length = 337
Score = 25.4 bits (54), Expect = 7.5, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 16 LSFRKGEHLEILNDTQGDWWLAR-SKATKQEGYIPSNYVAKLKSIEAEPYDFKKSF 70
+SF + L + DWW+ R K + G+IPS KL+++ + K F
Sbjct: 62 ISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSR--VKLENMRLQHEQRAKEF 115
>pdb|2DIQ|A Chain A, Solution Structure Of The Tudor Domain Of Tudor And Kh
Domain Containing Protein
Length = 110
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 8 YDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYI 48
Y+ EDL+ G+ + T G W+ AR T + G +
Sbjct: 23 YENSVPEDLTVHVGDIVAAPLPTNGSWYRARVLGTLENGNL 63
>pdb|4DEX|A Chain A, Crystal Structure Of The Voltage Dependent Calcium
Channel Beta-2 Subunit In Complex With The Cav2.2 I-Ii
Linker
Length = 339
Score = 25.4 bits (54), Expect = 8.0, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 16 LSFRKGEHLEILNDTQGDWWLAR-SKATKQEGYIPS 50
+SF + L + DWW+ R K + G+IPS
Sbjct: 64 ISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPS 99
>pdb|4DEY|A Chain A, Crystal Structure Of The Voltage Dependent Calcium
Channel Beta-2 Subunit In Complex With The Cav1.2 I-Ii
Linker
Length = 337
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 16 LSFRKGEHLEILNDTQGDWWLAR-SKATKQEGYIPS 50
+SF + L + DWW+ R K + G+IPS
Sbjct: 62 ISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPS 97
>pdb|3FDR|A Chain A, Crystal Structure Of Tdrd2
Length = 94
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 8 YDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV-------AKLKSIE 60
Y+ EDL+ G+ + T G W+ AR T + G + +V LK +
Sbjct: 18 YENSVPEDLTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLR 77
Query: 61 AEPYDF 66
A DF
Sbjct: 78 ALRSDF 83
>pdb|2XM6|A Chain A, Crystal Structure Of The Protein Corresponding To Locus
C5321 From Cft073 E.Coli Strain
Length = 490
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 9 DARTDEDLSFRKGEHLEILND-TQGDWWLARSKATKQEGYIPSNYVAKLKSIEAE--PYD 65
+A+ +L +R + E D TQ W R+ ++GY P+ YV L+ + E P D
Sbjct: 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAA---EQGYTPAEYVLGLRYMNGEGVPQD 94
Query: 66 FKKS 69
+ ++
Sbjct: 95 YAQA 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,215,769
Number of Sequences: 62578
Number of extensions: 74010
Number of successful extensions: 538
Number of sequences better than 100.0: 296
Number of HSP's better than 100.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 196
Number of HSP's gapped (non-prelim): 302
length of query: 70
length of database: 14,973,337
effective HSP length: 40
effective length of query: 30
effective length of database: 12,470,217
effective search space: 374106510
effective search space used: 374106510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)