RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1682
(70 letters)
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 107 bits (269), Expect = 9e-33
Identities = 45/68 (66%), Positives = 54/68 (79%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
IFVALYDY+ART EDLSF+KGE +I+N+T+GDWW ARS AT + GYIPSNYV SI+
Sbjct: 29 IFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPADSIQ 88
Query: 61 AEPYDFKK 68
AE + F K
Sbjct: 89 AEEWYFGK 96
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C
4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A
1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C
1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 104 bits (261), Expect = 8e-32
Identities = 37/68 (54%), Positives = 44/68 (64%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
+FVALYDY+A DLSF KGE +IL GDWW ARS T + GYIPSNYVA + SI+
Sbjct: 8 LFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDSIQ 67
Query: 61 AEPYDFKK 68
E +
Sbjct: 68 GEQKLISE 75
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 112 bits (283), Expect = 8e-32
Identities = 44/68 (64%), Positives = 55/68 (80%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
FVALYDY++RT+ DLSF+KGE L+I+N+T+GDWWLA S +T Q GYIPSNYVA SI+
Sbjct: 4 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQ 63
Query: 61 AEPYDFKK 68
AE + F K
Sbjct: 64 AEEWYFGK 71
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 103 bits (259), Expect = 2e-31
Identities = 36/69 (52%), Positives = 49/69 (71%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
+F ALYDY+ART++DLSF KGE +ILN ++GDWW ARS T + GYIPS Y+A + ++
Sbjct: 7 LFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDRLD 66
Query: 61 AEPYDFKKS 69
+ D K
Sbjct: 67 YKDDDDKHH 75
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 102 bits (257), Expect = 4e-31
Identities = 36/60 (60%), Positives = 49/60 (81%), Gaps = 1/60 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
I VALYDY+A EDLSF+KG+ + +L ++ G+WW ARS AT++EGYIPSNYVA++ S+E
Sbjct: 27 IVVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVDSLE 85
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 102 bits (255), Expect = 7e-31
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
L DY + FR+GE L +++D G WW A S +T +E YIP VA++
Sbjct: 19 FLAVLSDYPSPDISPPIFRRGEKLRVISDE-GGWWKAISLSTGRESYIPGICVARVSGPS 77
Query: 61 A 61
+
Sbjct: 78 S 78
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor
complex, DOWN-regulated kinase, ordered activation
loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A*
2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 109 bits (275), Expect = 1e-30
Identities = 39/68 (57%), Positives = 53/68 (77%), Gaps = 1/68 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
I VALYDY+A EDLSF+KG+ + +L ++ G+WW ARS AT++EGYIPSNYVA++ S+E
Sbjct: 10 IVVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVDSLE 68
Query: 61 AEPYDFKK 68
E + FK
Sbjct: 69 TEEWFFKG 76
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3
domain, phosphorylation; NMR {Mus musculus} SCOP:
b.34.2.1
Length = 67
Score = 98.9 bits (247), Expect = 8e-30
Identities = 29/65 (44%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
I VA+YD+ A DL +G+ IL WW AR K EGYIPSNYV KS
Sbjct: 4 IVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDK-YGSEGYIPSNYVTGKKSNN 62
Query: 61 AEPYD 65
+ YD
Sbjct: 63 LDQYD 67
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 98.5 bits (246), Expect = 2e-29
Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+FVALYDY+A T++DLSF KGE +ILN ++GDWW ARS T + GYIPSNYVA +
Sbjct: 17 LFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 72
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 98.2 bits (245), Expect = 2e-29
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
+ +ALYDY ++L+ R+ E +L+ ++ WW + + EGY+PS+Y+ +
Sbjct: 21 VVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDR-NGHEGYVPSSYLVEKSPNN 79
Query: 61 AEPYD 65
E Y+
Sbjct: 80 LETYE 84
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 97.5 bits (243), Expect = 7e-29
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
I VALYDY + + +DLSF+KG+ + +L ++ G+WW ARS AT++EGYIPSNYVA++ S
Sbjct: 5 IVVALYDYVSWSPDDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVDSGG 63
Query: 61 AEPYDFKKS 69
+
Sbjct: 64 GTSGGGRHR 72
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 95.8 bits (239), Expect = 2e-28
Identities = 33/58 (56%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
I VALY YD +DLSF+KGE +++L + G+WW A+S TK+EG+IPSNYVAKL +
Sbjct: 9 IVVALYPYDGIHPDDLSFKKGEKMKVLEE-HGEWWKAKSLLTKKEGFIPSNYVAKLNT 65
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 103 bits (258), Expect = 4e-28
Identities = 44/68 (64%), Positives = 55/68 (80%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
FVALYDY++RT+ DLSF+KGE L+I+N+T+GDWWLA S +T Q GYIPSNYVA SI+
Sbjct: 87 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQ 146
Query: 61 AEPYDFKK 68
AE + F K
Sbjct: 147 AEEWYFGK 154
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 102 bits (257), Expect = 5e-28
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
+FVALYD+ A D LS KGE L +L W + +G++PSNY+ + S+E
Sbjct: 45 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEA-QTKNGQGWVPSNYITPVNSLE 103
Query: 61 AEPYDFKK 68
+
Sbjct: 104 KHSWYHGP 111
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton,
phosphorylation, SH3 domain, DNA damage, DNA repair,
nucleus; NMR {Saccharomyces cerevisiae}
Length = 71
Score = 94.3 bits (235), Expect = 6e-28
Identities = 13/63 (20%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQ-GDWWLARSKATKQEGYIPSNYVAKLKSI 59
+ YD+ A + ++L+ + G+ + IL+D + DWW+ + + + G +P+ ++ ++
Sbjct: 8 RGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVRDK 67
Query: 60 EAE 62
+
Sbjct: 68 KHT 70
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2
domain, signaling protein; NMR {Homo sapiens}
Length = 72
Score = 94.3 bits (235), Expect = 7e-28
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
+ VA +DY A+ +++L +K E L +L+D+ WW R+ + G++PSNYV + S
Sbjct: 9 VVVAKFDYVAQQEQELDIKKNERLWLLDDS-KSWWRVRNS-MNKTGFVPSNYVERKNSAR 66
Query: 61 AE 62
A
Sbjct: 67 AA 68
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 93.6 bits (233), Expect = 1e-27
Identities = 33/68 (48%), Positives = 42/68 (61%), Gaps = 7/68 (10%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATK-------QEGYIPSNYV 53
FVAL+DY ART EDLSFR G+ L++L+ + WWLAR K +GYIPSNYV
Sbjct: 9 YFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYV 68
Query: 54 AKLKSIEA 61
A+ +
Sbjct: 69 AEDSGPSS 76
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 100 bits (250), Expect = 5e-27
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
+A Y++ ++DL F KG+ L I+ T+ W +EG IP+NYV K + ++
Sbjct: 13 ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGVK 72
Query: 61 AEP 63
A
Sbjct: 73 AGT 75
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels,
signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP:
b.34.2.1 PDB: 1h92_A 1kik_A
Length = 62
Score = 91.6 bits (228), Expect = 6e-27
Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAK 55
+ +AL+ Y+ D DL F KGE L IL + G+WW A+S T QEG+IP N+VAK
Sbjct: 8 LVIALHSYEPSHDGDLGFEKGEQLRILEQS-GEWWKAQSLTTGQEGFIPFNFVAK 61
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 91.7 bits (228), Expect = 8e-27
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAK 55
+ +ALYDY ++L+ R E +L+ ++ WW + K EGY PS+Y+ +
Sbjct: 22 LVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDK-NGHEGYAPSSYLVE 75
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 90.8 bits (226), Expect = 1e-26
Identities = 28/57 (49%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLK 57
VALYDY DL RKG+ IL ++ WW AR K QEGYIPSNYV + +
Sbjct: 10 KVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDK-NGQEGYIPSNYVTEAE 65
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 90.4 bits (225), Expect = 2e-26
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
+FVAL+ Y A E+L +KGE + +L Q W S T + G PS+YV +
Sbjct: 9 MFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVSGPS 68
Query: 61 A 61
+
Sbjct: 69 S 69
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 89.2 bits (222), Expect = 6e-26
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
I +A +DY A+ D++L +K E L +L+D+ WW R+ + GY+PSNYV +
Sbjct: 6 IVIAKWDYTAQQDQELDIKKNERLWLLDDS-KTWWRVRNA-ANRTGYVPSNYVERKLEHH 63
Query: 61 AEPY 64
+
Sbjct: 64 HHHH 67
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 89.8 bits (223), Expect = 6e-26
Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQG-DWWLARSKATKQEGYIPSNYVAKLKSIE 60
+ ++ +L+FRKG+ + IL + W+ + + QEG + + + +
Sbjct: 20 CITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRERSGPS 79
Query: 61 A 61
+
Sbjct: 80 S 80
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 89.0 bits (221), Expect = 1e-25
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
+ +ALYDY ++ +++ +KG+ L +LN T DWW ++G++P+ YV KL +
Sbjct: 19 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAYVKKLAAAW 76
Query: 61 AEPYDFK 67
+ P K
Sbjct: 77 SHPQFEK 83
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 88.6 bits (220), Expect = 1e-25
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWW---LARSKATKQEGYIPSNYVAKLK 57
+V L+D+ +RTDE+LSFR G+ + + WW L + +GY+P NY+A+ +
Sbjct: 12 KYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYLAERE 71
Query: 58 S 58
+
Sbjct: 72 T 72
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 88.0 bits (219), Expect = 2e-25
Identities = 13/56 (23%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQG-DWWLARSKATKQEGYIPSNYVAKL 56
+ YD+ A + ++L+ + G+ + IL+D + DWW+ + + + G +P+ ++ +
Sbjct: 5 GIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV 60
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C*
2o88_A 1bbz_A 1awo_A
Length = 63
Score = 87.6 bits (218), Expect = 2e-25
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILN-DTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
+FVALYD+ A D LS KGE L +L + G+W A++ +G++PS Y+ + S
Sbjct: 7 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQT--KNGQGWVPSAYITPVNS 63
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein
3, protein-protein interaction, structural genomics;
NMR {Homo sapiens}
Length = 68
Score = 87.7 bits (218), Expect = 2e-25
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
LY+++AR +L+ +GE LE+L+ + WWL +++ + GYIPSN + L
Sbjct: 9 KMQVLYEFEARNPRELTVVQGEKLEVLDHS-KRWWLVKNE-AGRSGYIPSNILEPLSGPS 66
Query: 61 A 61
+
Sbjct: 67 S 67
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic
protein NCK2; T-cell receptor, SH3 domain, immunology,
SH2 domain; NMR {Homo sapiens}
Length = 86
Score = 87.2 bits (216), Expect = 6e-25
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAK 55
I +A +DY A+ D++L +K E L +L+D+ WW R+ + GY+PSNYV +
Sbjct: 33 IVIAKWDYTAQQDQELDIKKNERLWLLDDS-KTWWRVRNA-ANRTGYVPSNYVER 85
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 86.2 bits (214), Expect = 1e-24
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSI 59
+A Y++ ++DL F KG+ L I+ T+ W +EG IP+NYV K + +
Sbjct: 15 IAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGV 71
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like
protein; SH3, EPS8, EPS8L2, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 85.8 bits (213), Expect = 1e-24
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
LYD+ AR +LS K E LE+L D WW RS+ + Q GY+P N + +
Sbjct: 9 YVKILYDFTARNANELSVLKDEVLEVLEDG-RQWWKLRSR-SGQAGYVPCNILGEASGPS 66
Query: 61 A 61
+
Sbjct: 67 S 67
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 86.4 bits (214), Expect = 1e-24
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILN--DTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
+ LY + + T+E+L+F KGE +E++ + +WW ++ Q G +P NYV L
Sbjct: 19 VVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNA-RGQVGLVPKNYVVVLSD 77
Query: 59 IEAEP 63
A
Sbjct: 78 GPALH 82
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil,
cytoplasm, SH3 domain, signaling protein; NMR {Homo
sapiens} PDB: 2rol_A
Length = 68
Score = 85.4 bits (212), Expect = 2e-24
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
+ YD+ AR +LS ++ + LE+L+D+ WW R QEGY+P N + +
Sbjct: 10 WVLCNYDFQARNSSELSVKQRDVLEVLDDS-RKWWKVRDP-AGQEGYVPYNILTPYPAAA 67
Query: 61 A 61
+
Sbjct: 68 S 68
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 84.3 bits (209), Expect = 6e-24
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILN--DTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
+ LY + + T+E+L+F KGE +E++ + +WW ++ A Q G +P NYV L
Sbjct: 8 VVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKN-ARGQVGLVPKNYVVVLSD 66
Query: 59 IEA 61
A
Sbjct: 67 GPA 69
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 83.5 bits (207), Expect = 1e-23
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEA 61
FVA+ DY A + LSF +GE + IL T DWW GYIP+N+V K +
Sbjct: 10 FVAIADYAATDETQLSFLRGEKILILRQTTADWWWGER--AGCCGYIPANHVGKHSGPSS 67
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 82.8 bits (205), Expect = 2e-23
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILN----DTQGDWWLARSKATKQEGYIPSNYVAKL 56
++ A+Y + AR +LS + L+IL +WWLA ++GY+PSNY+ K
Sbjct: 15 VYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAE--VNGKKGYVPSNYIRKT 72
Query: 57 KSIEA 61
+S +
Sbjct: 73 ESGPS 77
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 82.3 bits (204), Expect = 3e-23
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
+ YD+ AR +LS K + LEIL+D WW R+ + G++P+N + +++ E
Sbjct: 3 YAKSKYDFVARNSSELSVMKDDVLEILDDR-RQWWKVRNA-SGDSGFVPNNILDIMRTPE 60
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 82.2 bits (203), Expect = 7e-23
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 9/71 (12%)
Query: 1 IFVALYDYDART--------DEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNY 52
IFVAL+DYD T +E+L F++G+ +++ D D + R + + G IP N
Sbjct: 19 IFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFY-RGETCARLGLIPCNM 77
Query: 53 VAKLKSIEAEP 63
V+++++ + E
Sbjct: 78 VSEIQADDEEM 88
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 81.2 bits (201), Expect = 9e-23
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLK 57
++A+ D+ A+ DL+F+KGE L ++ WW+A+ A EG +P Y+
Sbjct: 13 YIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKD-AKGNEGLVPRTYLEPYS 67
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A
2kr3_A
Length = 65
Score = 81.2 bits (201), Expect = 9e-23
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATK------QEGYIPSNYVA 54
+ +ALYDY ++ +++ +KG+ L +LN T DWW K T ++G++P+ YV
Sbjct: 3 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVK 62
Query: 55 KL 56
KL
Sbjct: 63 KL 64
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 80.5 bits (199), Expect = 2e-22
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEA 61
VALYDY A ++L+ +G+ + + DWW QEGY P+N+VA +
Sbjct: 9 VVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSI-GKGQEGYFPANHVASETLYQE 67
Query: 62 EP 63
P
Sbjct: 68 LP 69
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 80.4 bits (199), Expect = 2e-22
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEA 61
VA+Y ++ ++ +S +GE L ++ + +GD W + EGY+P++Y+ +
Sbjct: 11 VAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRVTSGPSS 69
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 80.0 bits (198), Expect = 3e-22
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEA 61
+ALYDY ++ +++ +KG+ L +LN T DWW ++G++P+ YV KL ++
Sbjct: 8 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAYVKKLDPAQS 65
Query: 62 EP 63
Sbjct: 66 AS 67
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 80.1 bits (198), Expect = 3e-22
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEA 61
+ALYDY ++ +++ +KG+ L +LN T DWW ++G++P+ YV KL ++
Sbjct: 5 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV--NDRQGFVPAAYVKKLDPAQS 62
Query: 62 EP 63
Sbjct: 63 AS 64
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 78.2 bits (193), Expect = 2e-21
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGD-WWLARSKATKQEGYIPSNYVAKLKSIEA 61
+Y Y A ++L+ + E LE++ D + W AR Q GY+P Y+ S
Sbjct: 17 KVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKAR-NKVGQVGYVPEKYLQFPTSSGP 75
Query: 62 EP 63
Sbjct: 76 SS 77
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 81.0 bits (199), Expect = 2e-21
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVA 54
V + + + DL F +GE LEIL+ T DWW AR+ G +P+NYV
Sbjct: 121 VVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNA-LGTTGLVPANYVQ 172
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 80.5 bits (198), Expect = 2e-21
Identities = 34/68 (50%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
+ +AL+ Y+ D DL F KGE L IL G+WW A+S T QEG+IP N+VAK S+E
Sbjct: 14 LVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVAKANSLE 72
Query: 61 AEPYDFKK 68
EP+ FK
Sbjct: 73 PEPWFFKN 80
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 77.0 bits (190), Expect = 4e-21
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 2 FVALYDYDARTDED-LSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLK-SI 59
F A YD+ L +KG+ + I D W LA+ +EG++P+ Y+ K +
Sbjct: 5 FEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTR 64
Query: 60 EAEP 63
P
Sbjct: 65 NTVP 68
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 76.9 bits (190), Expect = 4e-21
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
AL+D++ +EDL F+KG+ L I + + WW A + + G IP YV K
Sbjct: 7 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAED-SEGKRGMIPVPYVEKYHH 61
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 76.7 bits (189), Expect = 5e-21
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATK--QEGYIPSNYVAKLKS 58
++V++ DY+ +E F++G +E+L WW + +G++PSNY+ K S
Sbjct: 12 VYVSIADYEG-DEETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKNS 70
Query: 59 IEA 61
+
Sbjct: 71 GPS 73
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 76.6 bits (189), Expect = 6e-21
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 2 FVALYDYDARTDED-LSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
A+ Y D D +SF KG+ + N+ + W + T ++G I + V ++
Sbjct: 10 VRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVSG 67
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 75.3 bits (186), Expect = 2e-20
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAK 55
AL+D++ +EDL F+KG+ L I + + WW A + + G IP YV K
Sbjct: 5 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAED-SEGKRGMIPVPYVEK 56
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 70
Score = 75.0 bits (185), Expect = 2e-20
Identities = 15/57 (26%), Positives = 33/57 (57%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
+ A+Y Y + +++L R+G+ ++++ W++ S+ T++ G P NYVA +
Sbjct: 10 YRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPVSG 66
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 78.7 bits (193), Expect = 1e-19
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEA 61
V + + + DL F +GE LEIL+ T DWW AR+ A G +P+NYV
Sbjct: 150 VVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARN-ALGTTGLVPANYVQIQMEFHN 208
Query: 62 EPYDFKKS 69
+ S
Sbjct: 209 DRTSKGAS 216
Score = 47.1 bits (111), Expect = 4e-08
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 2/59 (3%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
+A L +KG+ + + + A Q G +P Y+ E
Sbjct: 252 VTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELDG--QIGSVPHTYLRFTAVSE 308
Score = 26.7 bits (58), Expect = 0.57
Identities = 3/31 (9%), Positives = 8/31 (25%), Gaps = 4/31 (12%)
Query: 38 RSKATKQEGYIPSNYVAKLKSIEAEPYDFKK 68
+ T + + + E + F
Sbjct: 21 MASMTGGQQMTTNGFD----PFEWRSFYFPG 47
Score = 25.6 bits (55), Expect = 1.6
Identities = 6/39 (15%), Positives = 11/39 (28%)
Query: 6 YDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQ 44
Y R ++ + +E + A K Q
Sbjct: 78 YSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQ 116
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 73.0 bits (180), Expect = 1e-19
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 2 FVALYDYDARTDED-LSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAK 55
F A YD+ L +KG+ + I + W L + +EG++P+ Y+
Sbjct: 3 FEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKP 57
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein;
1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A
1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A
1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A
...
Length = 62
Score = 73.0 bits (180), Expect = 1e-19
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+ LYDY ++ +L+ +KG+ L +LN T DWW ++G++P+ Y+ KL
Sbjct: 9 VLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVN--GRQGFVPAAYLKKL 61
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein,
membrane, nuclear protein, phosphorylation,
polymorphism, transport, structural genomics; NMR {Homo
sapiens}
Length = 70
Score = 72.3 bits (178), Expect = 3e-19
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLK 57
+A ++++ T ++SFRKGE + +L +W+ R T ++G P YV +
Sbjct: 11 IAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIS 65
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 71.9 bits (177), Expect = 3e-19
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLK 57
+A ++++ T ++SFRKGE + +L +W+ R T ++G P YV +K
Sbjct: 10 IAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIK 64
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 72.1 bits (177), Expect = 5e-19
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEA 61
++ Y D ++SF G +++L + WW R EG+ PS+Y+ ++ +
Sbjct: 11 YMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGE--LEGWAPSHYLVLDENEQP 68
Query: 62 EP 63
+P
Sbjct: 69 DP 70
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 75.7 bits (185), Expect = 6e-19
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 5 LYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEAEP 63
L+D++ +EDL F+KG+ L I + + WW A + + G IP YV K + A
Sbjct: 142 LFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAED-SEGKRGMIPVPYVEKYRPASASV 199
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 70.8 bits (174), Expect = 1e-18
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
++ALY Y + DL+F +GE + + G+WW + G PSNYV S
Sbjct: 11 YIALYPYSSVEPGDLTFTEGEEILVTQKD-GEWWTGSI--GDRSGIFPSNYVKPKDS 64
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 70.8 bits (174), Expect = 2e-18
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEAE 62
VA + Y RT ++LSFR+G+ L + DWW G IP Y+ E +
Sbjct: 14 VACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNG--MRGLIPHKYITLPAGTEKQ 71
Query: 63 P 63
Sbjct: 72 V 72
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3,
SH3-containing adapter molecule 1, SCAM-1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 90
Score = 70.5 bits (173), Expect = 3e-18
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
VA Y + + +LSFRKGEH+ ++ +W+ R T ++G P++YV
Sbjct: 21 VAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYV 71
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain,
SH2 domain, SRC homology 3, RAS signaling pathway,
proto- oncogene, phosphorylation; 1.5A {Homo sapiens}
PDB: 2j06_A
Length = 65
Score = 69.4 bits (170), Expect = 4e-18
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 2 FVALYDYDARTDED-LSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
A+ Y D D +SF KG+ + N+ + W + T ++G I + V ++
Sbjct: 8 VRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEV 63
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 71
Score = 69.3 bits (170), Expect = 5e-18
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
+V + Y +++ +++ F KG +E++ WW R +EG+ P++Y+ K K
Sbjct: 11 YVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLG--KEGWAPASYLKKAKD 65
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 68.8 bits (169), Expect = 5e-18
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
A YDYDA D +L+F + + + + DWWL + +G PSNYV
Sbjct: 4 TAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 54
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 72.4 bits (177), Expect = 8e-18
Identities = 18/51 (35%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
+A YD+ A D++LSF++G+ L++LN+ W +++ ++G+IP NY+
Sbjct: 4 IAKYDFKATADDELSFKRGDILKVLNEECDQNW-YKAELNGKDGFIPKNYI 53
Score = 65.9 bits (160), Expect = 3e-15
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 5 LYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
L+D+D + D +L FR+G+ + +++++ +WW Q G P NYV +
Sbjct: 164 LFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGAC--HGQTGMFPRNYVTPV 213
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 69.5 bits (170), Expect = 8e-18
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 1 IFVALYDYDART------DEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVA 54
+ VA Y Y+ + +L G++L + D D + Q G +PSN+V
Sbjct: 19 LCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVD 78
Query: 55 KLKSIEAEP 63
++ E+
Sbjct: 79 FVQDNESRL 87
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 70.0 bits (171), Expect = 8e-18
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARS-KATKQEGYIPSNYVAKLKSIEA 61
V LY++ A D++L GE+L I +W++A+ G +P +YV + ++
Sbjct: 7 VTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIIDLMDP 66
Query: 62 EP 63
Sbjct: 67 AK 68
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 67.8 bits (166), Expect = 2e-17
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEAE 62
L Y A E ++ +KG+ L +LN T DWW + + ++G++P+ YV KL S +
Sbjct: 4 PPLPPYSAGGRE-VTMKKGDILTLLNSTNKDWW--KVEVNDRQGFVPAAYVKKLDSGTGK 60
Query: 63 P 63
Sbjct: 61 E 61
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane;
2.05A {Saccharomyces cerevisiae}
Length = 70
Score = 67.8 bits (166), Expect = 2e-17
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 3 VALYDYDARTDE--DLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
ALY YDA D+ ++SF + E L++ D +G WW AR A + G IPSNYV + E
Sbjct: 9 KALYPYDADDDDAYEISFEQNEILQVS-DIEGRWWKARR-ANGETGIIPSNYVQLIDGPE 66
Query: 61 A 61
Sbjct: 67 E 67
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 66.4 bits (162), Expect = 1e-16
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILND----TQGDWWLARSKATKQEGYIPSNYVAKLKS 58
A YD+ A +DE++SFR G+ L + W LA + G IP+NYV L
Sbjct: 21 RAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLD-GQTTGLIPANYVKILGK 79
Query: 59 IEAEP 63
Sbjct: 80 RRGRK 84
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 65.4 bits (160), Expect = 2e-16
Identities = 12/57 (21%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
+V + +Y + + +LS + GE ++++ + WW + +++G++P+ Y+ S
Sbjct: 11 YVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTS--EEQGWVPATYLEAQNS 65
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 64.9 bits (159), Expect = 2e-16
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
F ALY ++ RT ++L F +G+ + I + + +WW SK + G IPSNYVA+
Sbjct: 10 FRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKG--RTGLIPSNYVAEQSG 64
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42
guanine nucleotide exchange factor (GEF) 9, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 65.5 bits (160), Expect = 2e-16
Identities = 15/61 (24%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEAE 62
A++D+ + +L+F+ G+ +++L+ + DWW + +EG+ P+++V + E E
Sbjct: 14 EAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQID--DEEGWFPASFVRLWVNQEDE 71
Query: 63 P 63
Sbjct: 72 V 72
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel
beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP:
b.34.2.1 PDB: 1n5z_A
Length = 92
Score = 65.6 bits (160), Expect = 3e-16
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 3 VALYDYDARTDE-DLSFRKGEHLEILNDT-----QGDWWLARSKATKQEGYIPSNYVAKL 56
ALYD+ E +++ +KG+ + IL+ DWW R+K GYIP NY+ +
Sbjct: 18 RALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTK-NGNIGYIPYNYIEII 76
Query: 57 KSIE 60
K +
Sbjct: 77 KRRK 80
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 65.0 bits (159), Expect = 3e-16
Identities = 14/55 (25%), Positives = 30/55 (54%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLK 57
VALYD++ D +L +G+ + I W +A +++ + G +P +V+ ++
Sbjct: 9 VALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQ 63
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 64.5 bits (158), Expect = 3e-16
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
+A +DY R+ +LSF+KG L + + DWW R +G +P Y+
Sbjct: 10 IAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNG--IDGLVPHQYI 58
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 64.5 bits (158), Expect = 3e-16
Identities = 14/55 (25%), Positives = 30/55 (54%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLK 57
VALYD++ D +L +G+ + I W +A +++ + G +P +V+ ++
Sbjct: 5 VALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQ 59
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 64.6 bits (158), Expect = 3e-16
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
+A +DY RT +LSF+KG L + DWW R +G IP Y+ +
Sbjct: 13 IAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNG--IDGLIPHQYIVVQDT 66
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 64.1 bits (157), Expect = 3e-16
Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGD-WWLARSKATKQEGYIPSNYV 53
LY Y + D++++ G+ + ++ G W + T + G +P+ Y+
Sbjct: 6 VLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYI 56
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 63.9 bits (156), Expect = 6e-16
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWW---LARSKATKQEGYIPSNYV 53
VA + Y + ++DL+F K + + + + +W+ S EG P ++V
Sbjct: 11 VAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFV 64
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 64.0 bits (156), Expect = 8e-16
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 3 VALYDYDARTDE-DLSFRKGEHLEILNDT-----QGDWWLARSKATKQEGYIPSNYVAKL 56
ALYD+ E +++ +KG+ + IL+ DWW R+K GYIP NY+ +
Sbjct: 18 RALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTK-NGNIGYIPYNYIEII 76
Query: 57 KSIE 60
K +
Sbjct: 77 KRRK 80
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 63.3 bits (155), Expect = 9e-16
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAK 55
F ALY ++ RT ++L F +G+ + I + + +WW SK + G IPSNYVA+
Sbjct: 6 FRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKG--RTGLIPSNYVAE 57
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 64.0 bits (156), Expect = 1e-15
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKA-TKQEGYIPSNYV 53
+ LYD+ A ++L+ GE+L I +W++A+ G +P +V
Sbjct: 9 IVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFV 60
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 63.0 bits (154), Expect = 1e-15
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
VALY + + +EDL R G+ + +L D+ DWW + + + G+ P+N+V +L
Sbjct: 11 VALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQD--RIGFFPANFVQRL 62
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 63.2 bits (154), Expect = 2e-15
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEAE 62
ALYD++A D +L+F+ GE + +L+D+ +WW + G PSN+V +IE E
Sbjct: 21 RALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHR--GIGLFPSNFVTTNLNIETE 78
Query: 63 P 63
Sbjct: 79 A 79
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold
protein 1, islet-brain-1, IB-1, mitogen-activated P
kinase 8-interacting protein 1; 3.00A {Rattus
norvegicus}
Length = 71
Score = 62.3 bits (152), Expect = 3e-15
Identities = 10/57 (17%), Positives = 24/57 (42%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
A++ + R +++L + L + + W+ A + T G P+ Y ++
Sbjct: 9 HRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTK 65
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 61.8 bits (151), Expect = 4e-15
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
L+ + T E+L G + +L +W Q+G +P NY+ +
Sbjct: 10 HRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWA--TVMFNGQKGLVPCNYLEPV 62
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 61.4 bits (150), Expect = 5e-15
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLK 57
ALYD++A +++L FR GE +E+L+ + WW R + G P+NYVA +
Sbjct: 5 RALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHN--KLGLFPANYVAPMM 57
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 62.0 bits (151), Expect = 5e-15
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILN-DTQGDWWLARSKATKQEGYIPSNYVAKLKSIEA 61
AL DY+ L F++ + + I D + W++ + +EG P ++V L S
Sbjct: 14 RALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNG--KEGSFPVDHVEILLSDVP 71
Query: 62 EP 63
P
Sbjct: 72 PP 73
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 61.5 bits (150), Expect = 6e-15
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
ALYDY A+ ++L+F +G + ++ G WW T+ + Y PSNYV +
Sbjct: 11 KALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYG-TRIQQYFPSNYVEDISG 65
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 77
Score = 61.6 bits (150), Expect = 6e-15
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 4 ALYDYDARTDED-LSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEAE 62
+YD+ A + L+ +GE + + N G WL ++G +P++YV L + +
Sbjct: 14 VMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEILPNDGKD 73
Query: 63 PY 64
P+
Sbjct: 74 PF 75
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 61.2 bits (149), Expect = 7e-15
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 7/57 (12%)
Query: 3 VALYDYDARTDE-DLSFRKGEHLEILNDT-----QGDWWLARSKATKQEGYIPSNYV 53
ALYD+ E +++ +KG+ + IL+ DWW R+K GYIP NY+
Sbjct: 11 RALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTK-NGNIGYIPYNYI 66
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 65.4 bits (158), Expect = 8e-15
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEA 61
LYD+ EDL F+KGE L I+ + WW AR+K + G IP YV KL
Sbjct: 128 VRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNK-DGRVGMIPVPYVEKLVRSSP 186
Query: 62 EPYDFKKSF 70
++
Sbjct: 187 HGKHGNRNS 195
Score = 57.3 bits (137), Expect = 7e-12
Identities = 7/61 (11%), Positives = 17/61 (27%), Gaps = 2/61 (3%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEA 61
+ A L+ G+ +++ W ++G P +V
Sbjct: 242 AIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNG--RKGLFPFTHVKIFDPQNP 299
Query: 62 E 62
+
Sbjct: 300 D 300
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding
protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A
1neb_A 3i35_A
Length = 64
Score = 60.7 bits (148), Expect = 9e-15
Identities = 15/55 (27%), Positives = 32/55 (58%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+ A+YDY A+ ++++SFR G+++ + W + T + G +P+NY+ +
Sbjct: 9 YRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFV 63
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN
structural genomics consortium, SGC; 2.00A {Homo
sapiens}
Length = 89
Score = 61.0 bits (148), Expect = 1e-14
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQG-----DWWLARSKATKQEGYIPSNYVA 54
+ A++DY+A DE+L+ R+G+ +++L+ WW + + + G PSNYVA
Sbjct: 32 WTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLP-SGRVGVFPSNYVA 88
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 60.9 bits (148), Expect = 2e-14
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEA 61
+A+YDY A +++LSF KG+ + ++N DWW G PSNYV
Sbjct: 38 IAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEING--VTGLFPSNYVKMTTDSSG 94
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 60.0 bits (146), Expect = 2e-14
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILN---DTQGDWWLARSKATKQEGYIPSNYVAKLKSI 59
ALYD A + ++LSFRKG+ + +L WWL ++G +P N + L +
Sbjct: 7 KALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHG--RQGIVPGNRLKILVGM 64
Query: 60 EAE 62
+
Sbjct: 65 YDK 67
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 60.1 bits (146), Expect = 2e-14
Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWW---LARSKATKQEGYIPSNYVAKLK 57
I Y A E LS G+ + IL WW L +Q+G+ P+++V L
Sbjct: 9 IAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLG 68
Query: 58 SIEAEP 63
Sbjct: 69 PSSERA 74
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 60.0 bits (146), Expect = 2e-14
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEAE 62
AL + A+ D L+F K + + +L Q +WW G+ P +YV + E+
Sbjct: 14 QALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHG--GRGWFPKSYVKIIPGSESG 70
Query: 63 P 63
P
Sbjct: 71 P 71
>1u3o_A Huntingtin-associated protein-interacting protein; SH3,
CIS-proline,, signaling protein; NMR {Rattus
norvegicus}
Length = 82
Score = 60.4 bits (146), Expect = 2e-14
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQG--DWWLARS--KATKQEGYIPSNYVA 54
V L D+ A +LS + G+ +E+L W L R+ ++ QEG +PS+ +
Sbjct: 21 VVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTLC 76
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 60.1 bits (146), Expect = 2e-14
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
VA+YDY +++LSF++G + ++ W+ G P NYV +
Sbjct: 21 VAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNG--VTGLFPGNYVESISG 74
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 59.6 bits (145), Expect = 3e-14
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
ALYDY A+ ++L G+ LE++ + + WW Q G++P +Y+ KL
Sbjct: 12 RALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNG--QRGFVPGSYLEKLSG 65
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 59.6 bits (145), Expect = 3e-14
Identities = 19/52 (36%), Positives = 35/52 (67%), Gaps = 3/52 (5%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQ-GDWWLARSKATKQEGYIPSNYV 53
+A YD+ A D++LSF++G+ L++LN+ +W+ A ++G+IP NY+
Sbjct: 13 IAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNG--KDGFIPKNYI 62
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 59.1 bits (144), Expect = 4e-14
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILN--DTQGDWWLARSKATKQEGYIPSNYV 53
VALY + DL FRKG+ + IL D+Q DWW R +EG P+NYV
Sbjct: 7 VALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNG--REGIFPANYV 57
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 59.3 bits (144), Expect = 5e-14
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILN--DTQGDWWLARSKATKQEGYIPSNYVAKL 56
ALY ++ + DL+F+ G+ + +++ D+ DWW + + Q G P+NYV
Sbjct: 21 TALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRG--QTGIFPANYVTMN 74
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 58.8 bits (143), Expect = 5e-14
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
ALYDYD + ++LSF+ G+ L L + W + Q G P+NYV +
Sbjct: 7 RALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI 60
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3
domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo
sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A
1wlp_B
Length = 193
Score = 61.9 bits (150), Expect = 5e-14
Identities = 12/53 (22%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
+ A+ DY+ + +++ G+ +E++ ++ WW + KA + G+IP++++
Sbjct: 13 TYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKA--KRGWIPASFL 63
Score = 58.5 bits (141), Expect = 1e-12
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
+VA+ Y A +++S +GE +E+++ WW+ R GY PS Y+ K
Sbjct: 84 YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKD--DVTGYFPSMYLQKSGQ 138
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 58.7 bits (143), Expect = 5e-14
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
ALY +D + D DL + G+ +++L +W+ + G P+NYV
Sbjct: 6 EALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNG--RTGIFPANYV 54
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 59.8 bits (145), Expect = 5e-14
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGD--WWLARSKATKQEGYIPSNYVAKLKSIEA 61
ALY ++AR +++SF G+ +++ T G+ W + G+ P NYV K+ S E
Sbjct: 10 ALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQG--NFGWFPCNYVEKMPSSEN 67
Query: 62 EP 63
E
Sbjct: 68 EK 69
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 59.8 bits (145), Expect = 5e-14
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGD----WWLARSKATKQEGYIPSNYVAKL 56
+Y Y + D++L G+ + + Q W S T G +P NY+ K
Sbjct: 18 TLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKA 77
Query: 57 KSIEA 61
Sbjct: 78 DECST 82
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 58.7 bits (143), Expect = 6e-14
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
AL+D+D + D +L FR+G+ + +++++ +WW Q G P NYV +
Sbjct: 6 QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHG--QTGMFPRNYVTAV 57
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 59.4 bits (144), Expect = 6e-14
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEAE 62
++Y A +++LS KG + ++ WW Q G+ PSNYV +
Sbjct: 21 YVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNG--QVGWFPSNYVTEEGDSPLG 78
Query: 63 P 63
Sbjct: 79 D 79
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 58.5 bits (142), Expect = 9e-14
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 4 ALYDYDARTDED-LSFRKGEHLEILNDTQGD-WWLARSKATKQEGYIPSNYVAKL 56
++ + A ++ LSF +G+ L +L + D W TK G+ PS+Y L
Sbjct: 12 TIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLL 66
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 58.0 bits (141), Expect = 1e-13
Identities = 10/55 (18%), Positives = 24/55 (43%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
A++ + R +++L + L + + W+ A + T G P+ Y ++
Sbjct: 6 HRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEV 60
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural
genomics, northeast structural genomics consortiu
PSI-2, protein structure initiative; NMR {Homo sapiens}
Length = 72
Score = 58.1 bits (141), Expect = 1e-13
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
A+YD++A D +L+F+ GE + +L+D+ +WW + G PSN+V
Sbjct: 21 RAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQ--GIGLFPSNFV 69
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 58.0 bits (141), Expect = 1e-13
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEAE 62
LYD++ +L F++G+ + + N +W+ + G+ P NYV + +E
Sbjct: 7 RGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHG--ESGFFPINYVEVIVPLEHH 64
Query: 63 P 63
Sbjct: 65 H 65
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 81
Score = 58.2 bits (141), Expect = 1e-13
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILN--DTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
LYDYDA +LS E + + + DW + Q+G +P Y+ L S
Sbjct: 21 RVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGN--QKGKVPITYLELLNS 76
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 57.5 bits (140), Expect = 1e-13
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLK 57
AL+D+ + +L+F+ G+ + +L+ DW + G P ++V LK
Sbjct: 8 EALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRG--ATGIFPLSFVKILK 60
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 57.5 bits (140), Expect = 1e-13
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLK 57
+ +DY A+ D++L+ GE + + G WW + + G P N+V ++K
Sbjct: 5 IVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQING--RRGLFPDNFVREIK 57
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif)
2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 57.6 bits (140), Expect = 1e-13
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
ALYD++A D +L+F+ GE + +L+D+ +WW + G PSN+V
Sbjct: 9 RALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHR--GTGLFPSNFV 57
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 57.8 bits (140), Expect = 2e-13
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWW 35
+ +ALYDY ++ +++ +KG+ L +LN T DWW
Sbjct: 23 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWW 57
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain
protein 2A, endophilin 1, EEN-B1, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 57.7 bits (140), Expect = 2e-13
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEAE 62
ALYD++ + +L F++G+ + + N +W+ G+ P NYV L ++
Sbjct: 11 RALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHG--HSGFFPINYVEILVALPHS 68
Query: 63 P 63
Sbjct: 69 G 69
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 57.7 bits (140), Expect = 2e-13
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSK-ATKQEGYIPSNYVAKLKS 58
+YD A D++L+F +GE + + + +WW+ + +++G P ++V L
Sbjct: 14 KTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILSD 70
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 57.6 bits (140), Expect = 2e-13
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
A +D+ A+T ++L +KG+ + I +W+ + G P Y+ L
Sbjct: 11 RAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHG--RVGIFPRTYIELL 62
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 57.9 bits (140), Expect = 2e-13
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 10 ARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEAEP 63
A +++ +KG+ L +LN T DWW ++G++P+ YV KL S +
Sbjct: 2 AMGPREVTMKKGDILTLLNSTNKDWWKVEVND--RQGFVPAAYVKKLDSGTGKE 53
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 57.7 bits (140), Expect = 2e-13
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEAE 62
AL D++ D++L FRK + + I++ W+ G+ P+ +V L E
Sbjct: 12 ALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNG--LRGWFPAKFVEVLDERSKE 68
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein;
2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB:
2sem_A 3sem_A 1k76_A 1kfz_A
Length = 58
Score = 57.2 bits (139), Expect = 2e-13
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 10/63 (15%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEAE 62
AL+D++ + +L+F++G+ + ++N +WW + + G PSNYV
Sbjct: 6 QALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNN--RRGIFPSNYV--------C 55
Query: 63 PYD 65
PY+
Sbjct: 56 PYN 58
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 57.7 bits (140), Expect = 2e-13
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEAE 62
ALY + AR D++L+ KG+ + I + WW ++G+ P+ YV +L S
Sbjct: 11 KALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNG--KKGHFPAAYVEELPSNAGN 68
Query: 63 P 63
Sbjct: 69 T 69
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 56.8 bits (138), Expect = 3e-13
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
ALYDYDA+T ++L+F++G+ + + WW + G++P+NYV +
Sbjct: 7 KALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNG--KRGWVPANYVQDI 58
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 57.4 bits (139), Expect = 3e-13
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
VALYDY A D+++SF + + + WW K + G P+NYV +S
Sbjct: 21 VALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKG--RYGLFPANYVELRQS 74
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 56.9 bits (138), Expect = 3e-13
Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
L++Y + +++L + G+ ++I + + WW + G PSN+V +L+
Sbjct: 11 KVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNN--KLGLFPSNFVKELEV 64
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 56.9 bits (138), Expect = 3e-13
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 2 FVALYDYDARTDED-LSFRKGEHLEILNDTQGD-WWLARSKATKQEGYIPSNYVAKL 56
A++ + A + LSF++G+ + +L D W S+ TK G+ P +Y L
Sbjct: 10 VKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVL 66
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 56.8 bits (138), Expect = 4e-13
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
+ YDYDA D++L+ R GE + + Q + WL + + G P N+V ++K
Sbjct: 5 IVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWL-EGELNGRRGMFPDNFVKEIKR 59
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 56.9 bits (138), Expect = 4e-13
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
+ALYDY A D+++SF + + + WW K + G P+NYV
Sbjct: 13 IALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKG--RYGLFPANYV 61
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 56.4 bits (137), Expect = 4e-13
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
AL+ Y+A EDL F++G+ + +L+ +W SK + G P +V +
Sbjct: 9 EALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKG--KVGIFPKVFVEDSAT 62
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 57.0 bits (138), Expect = 4e-13
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGD--WWLARSKATKQEGYIPSNYVAKLKSIE 60
VA Y++ AR +LS R+G+ + I + GD WW + + G+ PS YV +
Sbjct: 11 VARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNG--RIGWFPSTYVEEEGIQS 68
Query: 61 A 61
Sbjct: 69 G 69
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics,
SH3 domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 56.9 bits (138), Expect = 5e-13
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEAEP 63
A +++ +++LS KG+ + + +G WW + G+ PSNYV ++KS E
Sbjct: 15 ARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNG--RTGWFPSNYVREIKSSERSG 72
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 56.1 bits (136), Expect = 5e-13
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
ALY YDA+ ++LSF + ++I+ + WW R + ++G P+NYV K+
Sbjct: 9 KALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRG--KQGLFPNNYVTKI 60
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 57.8 bits (139), Expect = 5e-13
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARS-KATKQEGYIPSNYV 53
VA+Y++ LS + G+ + I GDW+ K +G P +++
Sbjct: 63 VAIYNFQGSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKSFI 113
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins,
CIN85, PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 56.1 bits (136), Expect = 6e-13
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
A +++ +++LSF KG+ + + +G WW + G+ PSNYV ++K
Sbjct: 10 RAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNG--RTGWFPSNYVREIKP 63
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 56.1 bits (136), Expect = 6e-13
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGD---WWLARSKATKQEGYIPSNYVAKLKS 58
ALYD ++L+F +G+ L IL + WW ++G P+N + L
Sbjct: 11 RALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHG--RQGLAPANRLQILSG 67
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 56.5 bits (137), Expect = 7e-13
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEAE 62
AL+D+ + +L+F+ G+ + +L+ DW + G P ++V LK E
Sbjct: 22 EALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRG--ATGIFPLSFVKILKDFPEE 79
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 55.7 bits (135), Expect = 9e-13
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLK 57
AL +Y + DL F KG+ + + +W+ G P++ V +
Sbjct: 11 KALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEING--VSGIFPASSVEVIS 63
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 55.7 bits (135), Expect = 1e-12
Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
L++Y + +++L + G+ ++I + + WW + G PSN+V +L+
Sbjct: 5 KVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNN--KLGLFPSNFVKELEL 58
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus}
Length = 68
Score = 55.7 bits (135), Expect = 1e-12
Identities = 12/54 (22%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
+ Y + D++L + G+ +E++ + + WW + G PSN++ +L
Sbjct: 11 QVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNG--KTGMFPSNFIKEL 62
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 85
Score = 55.9 bits (135), Expect = 1e-12
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGD--WWLARSKATKQEGYIPSNYVAKLKSIE 60
+AL Y LSF +G+ +++L + W + + G P++ V + +
Sbjct: 12 IALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGG--RSGLFPADIVQPAAAPD 69
Query: 61 AE 62
Sbjct: 70 FS 71
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling
protein; 2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 55.3 bits (134), Expect = 1e-12
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGD--WWLARSKATKQEGYIPSNYVAKLKSIE 60
++ Y+A+ D++L+ ++G+ + ++N D WW + G P N+V L +E
Sbjct: 6 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNG--RRGVFPDNFVKLLPPLE 63
Query: 61 AEP 63
Sbjct: 64 HHH 66
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 54.9 bits (133), Expect = 1e-12
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
A +++ +++LSF KG+ + + +G WW + G+ PSNYV ++
Sbjct: 8 RAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNG--RTGWFPSNYVREI 59
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 55.4 bits (134), Expect = 2e-12
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGD---WWLARSKATKQEGYIPSNYVAKLKS 58
ALYDY+ +TD++LSF +G + ILN D +W + G PS V +L S
Sbjct: 12 KALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNG--RIGVFPSVLVEELSS 68
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein
1; IRTKS-SH3, espfu, complex structure, protein
binding; NMR {Homo sapiens}
Length = 67
Score = 55.0 bits (133), Expect = 2e-12
Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 4 ALYDYDARTDED-LSFRKGEHLEILN-DTQGDWWLARSKATKQEGYIPSNYVAKLK 57
++ + A +++ LSF +G+ + +L + + W +K G+ PS+Y L+
Sbjct: 11 TIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLE 66
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 58.4 bits (140), Expect = 3e-12
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 6 YDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
+D++ +EDL F+KG+ L I + + WW A + + G IP YV K +
Sbjct: 141 FDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAED-SEGKRGMIPVPYVEKYRP 192
Score = 51.5 bits (122), Expect = 8e-10
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEAE 62
+ +A L+ GE +++ W + G+ P +V L E
Sbjct: 243 IQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNG--KRGHFPFTHVRLLDQQNPE 300
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 54.6 bits (132), Expect = 3e-12
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGD--WWLARSKATKQEGYIPSNYVAKLKS 58
++ Y+A+ D++L+ ++G+ + ++N D WW + G P N+V L
Sbjct: 11 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNG--RRGVFPDNFVKLLSG 66
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 55.2 bits (133), Expect = 3e-12
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEAE 62
+ Y + D++L + G+ +E++ + + WW + G PSN++ +L E
Sbjct: 22 QVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNG--KTGMFPSNFIKELSGESDE 79
Query: 63 P 63
Sbjct: 80 L 80
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 54.6 bits (132), Expect = 3e-12
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLK 57
ALYD++ D +L FR+G+ + + N +W+ Q G+ P +YV L
Sbjct: 17 KALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHG--QSGFFPLSYVQVLV 69
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 54.6 bits (132), Expect = 3e-12
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEA 61
AL+DY A+ +++L+F K ++ + +G WW KQ + PSNYV ++ + E
Sbjct: 10 KALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQ-LWFPSNYVEEMVNPEG 67
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 54.1 bits (131), Expect = 4e-12
Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
A+Y Y+A+ D+++S G+ + ++ G W + +G P++Y
Sbjct: 5 AIYAYEAQGDDEISIDPGDIITVIRGDDGSGWT-YGECDGLKGLFPTSYC 53
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 53.8 bits (130), Expect = 5e-12
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGD--WWLARSKATKQEGYIPSNYVAKL 56
L+ Y +++L+FR+GE + +++ G+ WW +EG P N+ ++
Sbjct: 10 RTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNG--KEGVFPDNFAVQI 63
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 53.9 bits (130), Expect = 6e-12
Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGD--WWLARSKATKQEGYIPSNYVAKLKSIE 60
++ Y+A+ D++L+ ++G+ + ++N D WW + G P N+V L
Sbjct: 13 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNG--RRGVFPDNFVKLLPPDF 70
Query: 61 AE 62
+
Sbjct: 71 EK 72
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 72
Score = 53.8 bits (130), Expect = 6e-12
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQ-GDWWLARSKATKQEGYIPSNYVAKLKS 58
ALY A D +LSF G + ++ +Q W + G IP NYV L
Sbjct: 15 ALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNG--KTGLIPENYVEFLSG 68
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 53.9 bits (130), Expect = 8e-12
Identities = 5/59 (8%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEA 61
+ A+ ++++ ++ + + +L + W + G+ P ++ + +
Sbjct: 21 EITKAFFAKQADEVTLQQADVVLVL-QQEDGWLYGERLRDGETGWFPEDFARFISGPSS 78
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 53.6 bits (129), Expect = 8e-12
Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 8/62 (12%)
Query: 2 FVALYDYDAR-------TDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVA 54
+A DYD L+ R G+ + + + + G +P++ +
Sbjct: 10 MIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFY-YGELGGHRGLVPAHLLD 68
Query: 55 KL 56
+
Sbjct: 69 HM 70
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma
1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus}
PDB: 1ywp_A 1ywo_A
Length = 61
Score = 53.0 bits (128), Expect = 9e-12
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKL 56
AL+DY A+ +++L+F K ++ + G WW K++ + PSNYV ++
Sbjct: 7 KALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGG-KKQLWFPSNYVEEM 59
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 53.4 bits (128), Expect = 1e-11
Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 15/74 (20%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGD---------------WWLARSKATKQE 45
+ ALY + EDL G+ L + W ++ T+Q
Sbjct: 13 QYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQR 72
Query: 46 GYIPSNYVAKLKSI 59
G P YV L +
Sbjct: 73 GDFPGTYVEFLGPV 86
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 52.6 bits (127), Expect = 2e-11
Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
+D+ A++ ++L+ +KG+ + I + +W + G P+NYV
Sbjct: 6 LKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHG--RLGIFPANYV 53
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR
{Homo sapiens}
Length = 88
Score = 52.9 bits (127), Expect = 2e-11
Identities = 8/67 (11%), Positives = 19/67 (28%), Gaps = 2/67 (2%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEAE 62
+ A L+ G+ +++ W ++G P +V +
Sbjct: 22 IQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNG--RKGLFPFTHVKIFDPQNPD 79
Query: 63 PYDFKKS 69
+ S
Sbjct: 80 ENESGPS 86
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 52.1 bits (125), Expect = 2e-11
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
+ Y A +++LS G + ++ WW R Q G+ PSNYV
Sbjct: 5 FVXFAYVAEREDELSLVXGSRVTVMEXCSDGWW--RGSYNGQIGWFPSNYV 53
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 52.6 bits (126), Expect = 3e-11
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 4 ALYDYDARTDED-LSFRKGEHLEILNDTQGDWWLAR----SKATKQEGYIPSNYVAKLK 57
AL D+ D L+ R G+ + +L W + T + GY P V +
Sbjct: 23 ALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVVS 81
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 55.2 bits (131), Expect = 5e-11
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLK 57
ALYDY+ + ++LSF+ G+ L + D W Q G P+NYV ++
Sbjct: 433 ALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEAIQ 486
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 53.2 bits (127), Expect = 5e-11
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILN-DTQGDWWLARSKATKQEGYIPSNYVAKLKSIEA 61
A YD+ AR +LS ++G+ ++ILN Q WW + G+ PSNYV + S
Sbjct: 9 KARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYG--RIGWFPSNYVEEDYSEYL 66
Query: 62 EP 63
Sbjct: 67 PE 68
Score = 26.2 bits (57), Expect = 0.78
Identities = 3/22 (13%), Positives = 6/22 (27%)
Query: 2 FVALYDYDARTDEDLSFRKGEH 23
Y D D + ++
Sbjct: 105 VFKQYANDNGVDGEWTYDDATK 126
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical
protein BAA76854.1, riken structural
genomics/proteomics initiative RSGI; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 92
Score = 51.5 bits (123), Expect = 1e-10
Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 14/73 (19%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILN--DTQG--DWWLARSKATKQEGYIPSNYVAKL 56
+F A +++A D D+S +G+ + ++ D G + WL + TK G++ S+++
Sbjct: 19 LFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTK--GFVYSSFL--- 73
Query: 57 KSIEAEPYDFKKS 69
+PY+ ++S
Sbjct: 74 -----KPYNPRRS 81
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 50.8 bits (122), Expect = 1e-10
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 10/63 (15%)
Query: 2 FVALYDYDART-------DEDLSFRKGEHLEILNDTQGD-WWLARSKATKQEGYIPSNYV 53
VALYDYD R + +L+F G+ + + + D ++ Q+G +PSN++
Sbjct: 10 MVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNG--QKGLVPSNFL 67
Query: 54 AKL 56
++
Sbjct: 68 EEV 70
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 50.0 bits (120), Expect = 1e-10
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 13 DEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEAEP-----YDFK 67
+++ +KG+ L +LN T DWW + + ++G++P+ YV KL S + YD++
Sbjct: 3 PREVTMKKGDILTLLNSTNKDWW--KVEVNDRQGFVPAAYVKKLDSGTGKELVLALYDYQ 60
Query: 68 KS 69
+
Sbjct: 61 EK 62
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 50.1 bits (120), Expect = 2e-10
Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEA 61
+ + L +KG+ ++I++ W+ + G YV L S +
Sbjct: 15 HTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNN--KVGTFKFIYVDVLSSGPS 71
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 49.7 bits (118), Expect = 7e-10
Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 13/68 (19%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGD-----WW--------LARSKATKQEGYIP 49
A +DY A ++L + G+ + ++ + W + K G P
Sbjct: 48 QAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFP 107
Query: 50 SNYVAKLK 57
N+ +++
Sbjct: 108 ENFTERVQ 115
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 51.5 bits (122), Expect = 8e-10
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEAE 62
AL+D+ + +L+F+ G+ + +L+ DW + G P ++V LK E
Sbjct: 178 EALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRG--ATGIFPLSFVKILKDFPEE 235
Query: 63 P 63
Sbjct: 236 D 236
Score = 28.8 bits (63), Expect = 0.090
Identities = 6/47 (12%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 13 DEDLSFRKGEHLEILNDTQGDWWLARS-KATKQEGYIPSNYVAKLKS 58
+ +G+ + +L+D + ++ Q+ P K
Sbjct: 286 ALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPWKLHITQKD 332
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 48.1 bits (115), Expect = 1e-09
Identities = 8/61 (13%), Positives = 18/61 (29%), Gaps = 4/61 (6%)
Query: 4 ALYDYD--ARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEA 61
A+ A L+ G+ +++ W ++G P +V
Sbjct: 6 AIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNG--RKGLFPFTHVKIFDPQNP 63
Query: 62 E 62
+
Sbjct: 64 D 64
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 47.7 bits (113), Expect = 2e-09
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
Query: 2 FVALYDYDA------RTDEDLSFRKGEHLEILN-DTQGDWWLARSKATKQEGYIPSNYV 53
+Y L G+ +E+ + + +WW R+ AT + G+ P N V
Sbjct: 15 MEVFQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRV 73
>1wfw_A Kalirin-9A; SH3 domain, neuron-specific GDP/GTP exchange factor,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 74
Score = 47.1 bits (111), Expect = 3e-09
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 5 LYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQ----EGYIPSNYVAKL 56
+ DY A + ++ +GE +++L Q + L A+ EG++P + +A
Sbjct: 13 IKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAPF 68
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3,
signaling protein; NMR {Homo sapiens}
Length = 67
Score = 46.5 bits (111), Expect = 4e-09
Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 4/59 (6%)
Query: 4 ALYDY--DARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIE 60
+ +A L+ GE +++ W + G+ P +V L
Sbjct: 11 VIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNG--KRGHFPFTHVRLLDQQN 67
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein
complex, DOCK2, ELMO1, SH3 domain, PH domain bundle,
proline-rich sequence, cytoskeleton; 2.10A {Homo
sapiens}
Length = 184
Score = 48.2 bits (114), Expect = 7e-09
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARS-KATKQEGYIPSNYV 53
VA+Y++ LS + G+ + I GDW+ K +G P +++
Sbjct: 21 VAIYNFQGSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKSFI 71
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 48.7 bits (115), Expect = 9e-09
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 13/62 (20%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILN---------DTQGDWWLARSK----ATKQEGYIPS 50
++ + L F +G+ +L+ +G WLA ++ G IP+
Sbjct: 9 THFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPN 68
Query: 51 NY 52
Sbjct: 69 QS 70
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3
domain, peptide complex, alternative splicing, disease
mutation, HOST-virus interaction, phosphoprotein,
polymorphism; 1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A
1pnj_A 2pni_A 1pks_A 1pkt_A
Length = 83
Score = 45.5 bits (107), Expect = 2e-08
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 15/74 (20%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGD---------------WWLARSKATKQEG 46
+ ALYDY +ED+ G+ L + + W ++ T + G
Sbjct: 8 YRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERG 67
Query: 47 YIPSNYVAKLKSIE 60
P YV + +
Sbjct: 68 DFPGTYVEYIGRKK 81
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex,
GRB2,VAV, signaling protein/signaling protein complex;
1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 45.0 bits (106), Expect = 2e-08
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
Query: 3 VALYDYDA------RTDEDLSFRKGEHLEILN-DTQGDWWLARSKATKQEGYIPSNYVA 54
+Y L G+ +E+ + + +WW R+ AT + G+ P N V
Sbjct: 8 EVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 45.4 bits (107), Expect = 3e-08
Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 16/80 (20%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILN---DTQGDWW------LARSKATKQEGYIPSNYV 53
VAL DY A L+ +G+ + + + +W + GY PS+ V
Sbjct: 26 VALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIV 85
Query: 54 AKLKS-------IEAEPYDF 66
+ ++ ++ + +DF
Sbjct: 86 REDQTLKPGKVDVKTDKWDF 105
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 46.1 bits (109), Expect = 8e-08
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
AL+D+ D++L F+ G+ +E+++ T +WW R EG+ P+++V
Sbjct: 35 ALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVA--DGEGWFPASFV 82
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 45.1 bits (107), Expect = 1e-07
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 4 ALYDYDARTDED-----LSFRKGEHLEILNDTQGDWWLAR----SKATKQEGYIPSNY 52
AL+DYD D LSFR G+ L +++ +WW AR T G+IPS
Sbjct: 6 ALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKR 63
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 44.0 bits (104), Expect = 4e-07
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 9/57 (15%)
Query: 4 ALYDYDARTDED-----LSFRKGEHLEILNDTQGDWWLAR----SKATKQEGYIPSN 51
AL+DYD D+ L F+ G+ L + N + +WW AR +Q G +PS
Sbjct: 10 ALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPSK 66
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 42.0 bits (97), Expect = 2e-06
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 13/67 (19%)
Query: 3 VALYDYDARTDEDLSFRKGE---HLEILNDTQGD--W--------WLARSKATKQEGYIP 49
A +DY A ++L + G+ + N + D W W K K G P
Sbjct: 146 QAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFP 205
Query: 50 SNYVAKL 56
N+ ++
Sbjct: 206 ENFTERV 212
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A
1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 41.4 bits (96), Expect = 3e-06
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 8/55 (14%)
Query: 4 ALYDYDARTDED-------LSFRKGEHLEILNDTQGDWWLARS-KATKQEGYIPS 50
Y A ++D +SF + L + DWW+ R K + G+IPS
Sbjct: 43 TNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPS 97
>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo
sapiens} PDB: 2gto_A
Length = 96
Score = 38.5 bits (89), Expect = 1e-05
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGD--WWLARSKATKQEGYIPSNYVA 54
A D + +LSF++GE +EI+ T WL R+ A GYI + V
Sbjct: 32 KACCDVKGGKN-ELSFKQGEQIEIIRITDNPEGKWLGRT-ARGSYGYIKTTAVE 83
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 40.2 bits (93), Expect = 1e-05
Identities = 10/62 (16%), Positives = 25/62 (40%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKSIEA 61
+A+Y + RT +++ G+ + + + + ++ + G PS V +
Sbjct: 445 QIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIETVK 504
Query: 62 EP 63
P
Sbjct: 505 YP 506
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 38.2 bits (89), Expect = 4e-05
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 2 FVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLKS 58
+ +YDY A+ D++L+F KG+ + +LN DWW + + + Q G PSNYV
Sbjct: 5 VIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWW--KGEVSGQVGLFPSNYVKLTTD 59
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 38.3 bits (88), Expect = 5e-05
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 6 YDYDARTDEDLSFRKGEHLEILN---DTQGDWWLAR----SKATKQEGYIPSNYVAK 55
++Y+ + LSF KGE +++ + + WLA + + G IP+ A+
Sbjct: 113 FEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAE 169
>1v1c_A Obscurin; muscle, sarcomere, adapter, myogenesis, SH3-domain; NMR
{Homo sapiens}
Length = 71
Score = 36.3 bits (83), Expect = 5e-05
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 1 IFVALYDY--DARTDEDLSFRKGEHLEILNDTQGDWWLARSKATK----QEGYIPSNYVA 54
I+V DY + ++ R+G+++E+L+ WL R+K TK ++G++ Y+
Sbjct: 7 IYVVTADYLPLGAEQDAITLREGQYVEVLDAAHPLRWLVRTKPTKSSPSRQGWVSPAYLD 66
Query: 55 K 55
+
Sbjct: 67 R 67
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 37.6 bits (88), Expect = 6e-05
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEIL---NDTQGDWWLARSKATKQEGYIPSNYVAKLKSI 59
AL+DY+ + D++L ++G+ + I+ ++ + +WW AR +EGY+P N + I
Sbjct: 175 ALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLND--KEGYVPRNLLGLYPRI 231
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 37.6 bits (86), Expect = 8e-05
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 6 YDYDARTDEDLSFRKGEHLEILN---DTQGDWWLAR----SKATKQEGYIPSNYVAK 55
++Y+ + LSF KGE +++ + + WLA + + G IP+ A+
Sbjct: 105 FEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAE 161
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural
prote intermediate filament, crosslinking; 2.95A {Homo
sapiens}
Length = 283
Score = 37.0 bits (85), Expect = 1e-04
Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPS 50
+A+ DY +++ KG+ +++ Q W S ++ E +PS
Sbjct: 202 LAVCDY---KQVEVTVHKGDECQLVGPAQPSHWKVLS-SSGSEAAVPS 245
>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2
domain, signaling protein; 2.30A {Homo sapiens}
Length = 126
Score = 34.2 bits (79), Expect = 7e-04
Identities = 4/32 (12%), Positives = 9/32 (28%), Gaps = 3/32 (9%)
Query: 37 ARSKATKQEGYIPSNYVAKLKSIEAEPYDFKK 68
+ G +P ++P+ K
Sbjct: 4 SHHHHHHSSGLVPRGSHMIH---RSQPWFHHK 32
>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell
adapter containing SH2 domain protein; NMR {Mus
musculus}
Length = 141
Score = 32.5 bits (74), Expect = 0.004
Identities = 3/23 (13%), Positives = 9/23 (39%)
Query: 41 ATKQEGYIPSNYVAKLKSIEAEP 63
++ G S + + + +P
Sbjct: 2 SSGSSGPFNSTFADQEAELLGKP 24
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome;
2.95A {Homo sapiens}
Length = 450
Score = 32.4 bits (73), Expect = 0.005
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPS 50
AL DY + KG+ + ++ + W + +PS
Sbjct: 287 RALCDY---KQDQKIVHKGDECILKDNNERSKWYVTG-PGGVDMLVPS 330
>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; 2.50A {Mus
musculus}
Length = 138
Score = 31.0 bits (70), Expect = 0.011
Identities = 5/28 (17%), Positives = 9/28 (32%), Gaps = 1/28 (3%)
Query: 41 ATKQEGYIPSNYVAKLKSIEAEPYDFKK 68
++ G P + E + KK
Sbjct: 2 SSGSSGE-PVQDTPPTELHFGEKWFHKK 28
>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A*
Length = 138
Score = 30.4 bits (69), Expect = 0.023
Identities = 1/25 (4%), Positives = 8/25 (32%)
Query: 39 SKATKQEGYIPSNYVAKLKSIEAEP 63
S ++ + + + + +
Sbjct: 3 SGSSGKAEAEQNWWEGPPQDLSVHL 27
>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling
protein; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 102
Score = 29.2 bits (65), Expect = 0.040
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 15 DLSFRKGEHLEILNDTQGDWWLARSKATKQEGYIPSNYV 53
DL + GE LE++ T L R++ K GY+ +Y+
Sbjct: 57 DLQVKPGESLEVIQTTDDTKVLCRNEEGKY-GYVLRSYL 94
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 29.6 bits (66), Expect = 0.054
Identities = 7/57 (12%), Positives = 15/57 (26%), Gaps = 8/57 (14%)
Query: 13 DEDLSFRKGEHLEILN------DTQGDWWLARSKATKQEGYIPSNYVAKLKSIEAEP 63
L + ++L L +W +++ Q + L E
Sbjct: 141 LMQLRKIRDQYLVWLTQKGARQRKINEWLGIKNETEDQYSLMEDED--ALPHHEERT 195
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 28.8 bits (65), Expect = 0.089
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 4 ALYDYDARTDEDLSFRKGEHLEILN-DTQGD--WWLARSKATKQEGYIPSNYVAKLKSIE 60
AL+DY A ++LSFR+GE + +L D + WW A QEGY+P NY ++
Sbjct: 159 ALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHG--QEGYVPRNYFGLFPRVK 216
Query: 61 AEPYDFK 67
+ K
Sbjct: 217 PQRSKVK 223
>2hbw_A NLP/P60 protein; NLP/P60 family protein, structural genomics,
joint center FO structural genomics, JCSG, protein
structure initiative; HET: UNL; 1.05A {Anabaena
variabilis} PDB: 2evr_A 2fg0_A
Length = 235
Score = 28.7 bits (64), Expect = 0.10
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 20 KGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLK 57
G HL++ ++ QG G++ + LK
Sbjct: 41 VGRHLQVTSNQQGAAVEVCLCEDDYPGWLSLGDLGLLK 78
>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3
domain, structural genomics, protein structure
initiative; NMR {Bacillus thuringiensis
serovarkonkukian}
Length = 70
Score = 27.6 bits (62), Expect = 0.12
Identities = 9/38 (23%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 20 KGEHLEILNDTQGDWWLARSKATKQEGYIPSNYVAKLK 57
+G+ ++++ W + Q GYI + Y++KL+
Sbjct: 30 QGQKVQVI-SENSGWS--KINYNGQTGYIGTRYLSKLE 64
>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 111
Score = 27.2 bits (61), Expect = 0.22
Identities = 2/27 (7%), Positives = 7/27 (25%), Gaps = 4/27 (14%)
Query: 42 TKQEGYIPSNYVAKLKSIEAEPYDFKK 68
+ G + + S + +
Sbjct: 3 SGSSGMSSARFD----SSDRSAWYMGP 25
>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 125
Score = 25.3 bits (56), Expect = 1.4
Identities = 2/25 (8%), Positives = 7/25 (28%), Gaps = 4/25 (16%)
Query: 44 QEGYIPSNYVAKLKSIEAEPYDFKK 68
G + ++E + +
Sbjct: 2 SSGSSGNKIT----NLEIYEWYHRN 22
>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 25.3 bits (56), Expect = 1.5
Identities = 4/20 (20%), Positives = 5/20 (25%), Gaps = 4/20 (20%)
Query: 44 QEGYIPSNYVAKLKSIEAEP 63
G S + A P
Sbjct: 2 SSGSSGSREI----DYTAYP 17
>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain,
phosphotyrosine binding domain, protein tyrosine
kinase, signal transduction; NMR {Homo sapiens}
Length = 119
Score = 24.9 bits (55), Expect = 1.6
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 41 ATKQEGYIPSNYVAKLKSIEAE 62
++ G +P + +AE
Sbjct: 2 SSGSSGMVPCWNHGNITRSKAE 23
>2i8b_A Minor nucleoprotein VP30; VP30 ebola virus protein,
transcription, RNA binding, viral; HET: MSE; 2.00A
{Zaire ebolavirus}
Length = 152
Score = 25.2 bits (54), Expect = 2.0
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 6 YDYDARTDEDLSFRKGEHLEILNDTQGDW 34
+DYD T E+L F+ L L T W
Sbjct: 6 HDYDIPTTENLYFQGAITLLTLIKTAEHW 34
>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development,
SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; NMR {Homo sapiens}
Length = 116
Score = 25.0 bits (55), Expect = 2.0
Identities = 1/16 (6%), Positives = 8/16 (50%)
Query: 49 PSNYVAKLKSIEAEPY 64
++ + +K + + +
Sbjct: 4 HHHHHSHMKPLAEQDW 19
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 24.5 bits (54), Expect = 3.2
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 1 IFVALYDYDARTDEDLSFRKGEHLEILNDTQGDWWLARSK 40
+F ALY ++ RT ++L +G+ + I + + +WW SK
Sbjct: 16 VFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSK 55
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 24.6 bits (53), Expect = 3.7
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 14 EDLSFRKGEHLEILND 29
E + R G +EI+N
Sbjct: 1831 ERVGKRTGWLVEIVNY 1846
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl
pyrophosphate isomerase, TIM-barrel; 2.04A
{Streptococcus mutans}
Length = 365
Score = 24.0 bits (52), Expect = 4.4
Identities = 3/24 (12%), Positives = 10/24 (41%)
Query: 3 VALYDYDARTDEDLSFRKGEHLEI 26
++ ++ RK +H++
Sbjct: 22 ASMTGGQQMGRGSMTNRKDDHIKY 45
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.404
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,070,730
Number of extensions: 46309
Number of successful extensions: 490
Number of sequences better than 10.0: 1
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 228
Length of query: 70
Length of database: 6,701,793
Length adjustment: 40
Effective length of query: 30
Effective length of database: 5,584,953
Effective search space: 167548590
Effective search space used: 167548590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.3 bits)