Query psy16822
Match_columns 97
No_of_seqs 104 out of 185
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 22:57:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16822.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16822hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bay_A PRE-mRNA splicing facto 97.7 4.5E-06 1.5E-10 50.8 -0.4 28 66-96 3-31 (61)
2 2kr4_A Ubiquitin conjugation f 96.8 0.00016 5.5E-09 45.9 -0.6 29 65-96 13-41 (85)
3 2yu4_A E3 SUMO-protein ligase 96.8 0.00021 7.2E-09 45.9 -0.0 30 64-96 5-35 (94)
4 2f42_A STIP1 homology and U-bo 96.7 0.00016 5.5E-09 52.7 -0.8 31 63-96 103-133 (179)
5 2kre_A Ubiquitin conjugation f 96.0 0.00079 2.7E-08 44.1 -0.6 30 64-96 27-56 (100)
6 1wgm_A Ubiquitin conjugation f 95.9 0.001 3.4E-08 43.5 -0.5 29 65-96 21-50 (98)
7 1t1h_A Gspef-atpub14, armadill 93.6 0.011 3.9E-07 35.6 -0.2 28 65-95 7-34 (78)
8 2c2l_A CHIP, carboxy terminus 93.4 0.012 4.3E-07 42.3 -0.2 30 64-96 206-235 (281)
9 2ecn_A Ring finger protein 141 88.8 0.12 4.2E-06 30.2 0.8 48 39-88 14-70 (70)
10 2ysj_A Tripartite motif-contai 87.6 0.31 1.1E-05 27.9 2.0 15 80-94 31-45 (63)
11 3m62_A Ubiquitin conjugation f 86.7 0.11 3.6E-06 46.3 -0.5 29 65-96 890-919 (968)
12 2ysl_A Tripartite motif-contai 86.4 0.77 2.6E-05 26.7 3.4 13 81-93 32-44 (73)
13 2ecv_A Tripartite motif-contai 85.1 0.79 2.7E-05 27.0 3.0 12 39-50 18-29 (85)
14 2ecj_A Tripartite motif-contai 83.3 0.46 1.6E-05 26.4 1.3 15 80-94 26-40 (58)
15 2yur_A Retinoblastoma-binding 83.0 0.65 2.2E-05 27.6 2.0 14 81-94 27-41 (74)
16 3fl2_A E3 ubiquitin-protein li 82.6 0.5 1.7E-05 30.7 1.4 13 81-93 64-76 (124)
17 2ecw_A Tripartite motif-contai 82.4 0.55 1.9E-05 27.8 1.5 12 39-50 18-29 (85)
18 1chc_A Equine herpes virus-1 r 81.6 0.98 3.3E-05 26.0 2.4 12 39-50 4-15 (68)
19 2jny_A Uncharacterized BCR; st 81.4 0.45 1.5E-05 29.6 0.8 46 40-93 10-57 (67)
20 4ayc_A E3 ubiquitin-protein li 81.3 0.59 2E-05 31.1 1.5 15 80-94 64-78 (138)
21 2d8t_A Dactylidin, ring finger 81.1 0.81 2.8E-05 26.8 1.9 12 39-50 14-25 (71)
22 2ct2_A Tripartite motif protei 79.8 0.88 3E-05 27.3 1.8 15 80-94 30-44 (88)
23 1bor_A Transcription factor PM 79.3 0.75 2.6E-05 26.2 1.3 12 39-50 5-16 (56)
24 4ap4_A E3 ubiquitin ligase RNF 78.8 0.45 1.5E-05 30.4 0.2 54 39-94 47-104 (133)
25 3l11_A E3 ubiquitin-protein li 77.8 0.66 2.3E-05 29.7 0.8 15 80-94 26-40 (115)
26 1jm7_B BARD1, BRCA1-associated 76.9 0.87 3E-05 29.4 1.2 15 81-95 34-49 (117)
27 2xeu_A Ring finger protein 4; 76.8 2.4 8E-05 23.7 3.0 14 40-53 3-16 (64)
28 2jr6_A UPF0434 protein NMA0874 76.7 0.54 1.8E-05 29.2 0.1 39 41-87 9-48 (68)
29 1jm7_A BRCA1, breast cancer ty 76.4 0.92 3.1E-05 28.5 1.2 10 41-50 22-31 (112)
30 3htk_C E3 SUMO-protein ligase 76.1 0.58 2E-05 36.1 0.2 31 63-96 178-209 (267)
31 3ztg_A E3 ubiquitin-protein li 75.9 1.1 3.6E-05 27.4 1.4 25 67-94 14-39 (92)
32 2egp_A Tripartite motif-contai 75.6 0.69 2.4E-05 27.3 0.4 14 81-94 24-37 (79)
33 2hf1_A Tetraacyldisaccharide-1 74.7 0.52 1.8E-05 29.3 -0.3 39 41-87 9-48 (68)
34 2js4_A UPF0434 protein BB2007; 74.0 0.54 1.8E-05 29.3 -0.4 39 41-87 9-48 (70)
35 2ea6_A Ring finger protein 4; 73.2 4 0.00014 23.0 3.4 34 39-94 14-47 (69)
36 1rmd_A RAG1; V(D)J recombinati 72.6 1.5 5.1E-05 28.0 1.5 13 81-93 35-47 (116)
37 2pk7_A Uncharacterized protein 72.5 0.66 2.2E-05 28.9 -0.3 40 40-87 8-48 (69)
38 1z6u_A NP95-like ring finger p 70.5 1.8 6.1E-05 29.6 1.6 24 67-93 79-102 (150)
39 2ecm_A Ring finger and CHY zin 69.2 3.1 0.0001 22.7 2.1 17 78-94 18-34 (55)
40 2kiz_A E3 ubiquitin-protein li 68.7 3.2 0.00011 23.8 2.2 17 78-94 26-42 (69)
41 2csy_A Zinc finger protein 183 68.2 2 6.8E-05 25.6 1.3 14 81-94 27-40 (81)
42 3lrq_A E3 ubiquitin-protein li 67.6 2.3 8E-05 26.7 1.6 13 81-93 34-47 (100)
43 2ecl_A Ring-box protein 2; RNF 67.0 1.9 6.4E-05 26.2 1.0 41 39-94 14-55 (81)
44 2ecy_A TNF receptor-associated 66.6 2.9 9.9E-05 23.9 1.7 13 81-93 27-39 (66)
45 1iym_A EL5; ring-H2 finger, ub 66.1 4.3 0.00015 22.1 2.3 18 77-94 16-34 (55)
46 2k5r_A Uncharacterized protein 63.7 1.4 4.8E-05 29.2 -0.1 30 58-87 45-75 (97)
47 3knv_A TNF receptor-associated 63.5 2.9 9.9E-05 28.2 1.5 14 80-93 42-55 (141)
48 2kpi_A Uncharacterized protein 62.2 1.8 6.1E-05 25.7 0.2 38 41-88 11-51 (56)
49 2ecg_A Baculoviral IAP repeat- 61.8 3.2 0.00011 24.6 1.3 10 41-50 26-35 (75)
50 1g25_A CDK-activating kinase a 60.5 5.1 0.00017 22.8 2.0 11 40-50 3-14 (65)
51 2ect_A Ring finger protein 126 59.8 6.4 0.00022 23.0 2.4 16 80-95 29-44 (78)
52 2l0b_A E3 ubiquitin-protein li 55.6 5.1 0.00017 24.6 1.5 21 74-94 48-68 (91)
53 4ic3_A E3 ubiquitin-protein li 55.4 4.8 0.00016 23.9 1.3 14 80-93 35-49 (74)
54 1x6a_A LIMK-2, LIM domain kina 55.4 8.8 0.0003 22.7 2.5 62 29-92 4-67 (81)
55 3hct_A TNF receptor-associated 54.8 4.2 0.00014 26.1 1.1 13 81-93 30-42 (118)
56 2ckl_A Polycomb group ring fin 53.4 4.6 0.00016 25.3 1.1 14 81-94 27-41 (108)
57 3hcs_A TNF receptor-associated 52.4 4.2 0.00014 27.5 0.8 24 67-93 19-42 (170)
58 2y43_A E3 ubiquitin-protein li 52.2 5.1 0.00017 24.7 1.1 14 81-94 34-48 (99)
59 2djb_A Polycomb group ring fin 49.0 9.9 0.00034 22.0 2.0 14 81-94 27-41 (72)
60 1x63_A Skeletal muscle LIM-pro 47.9 8.8 0.0003 22.6 1.7 51 39-92 14-67 (82)
61 2ehe_A Four and A half LIM dom 47.5 9.1 0.00031 22.6 1.7 62 29-93 4-68 (82)
62 1x4j_A Ring finger protein 38; 47.1 9.5 0.00032 22.2 1.7 15 80-94 37-51 (75)
63 3qdr_B Colicin-A; COLA, TOLA, 45.5 7.9 0.00027 23.7 1.1 20 71-91 25-44 (63)
64 2ckl_B Ubiquitin ligase protei 42.8 8.3 0.00028 25.9 1.1 24 68-94 56-80 (165)
65 2cuq_A Four and A half LIM dom 42.2 18 0.00061 21.1 2.4 60 30-93 5-66 (80)
66 2ep4_A Ring finger protein 24; 37.4 21 0.00071 20.4 2.1 12 39-50 14-25 (74)
67 2egq_A FHL1 protein; LIM domai 37.4 10 0.00036 22.0 0.8 62 29-93 4-71 (77)
68 1pft_A TFIIB, PFTFIIBN; N-term 36.5 20 0.00068 19.9 1.9 34 40-80 5-38 (50)
69 3ng2_A RNF4, snurf, ring finge 35.7 8.1 0.00028 21.9 0.1 34 39-94 9-42 (71)
70 2y1n_A E3 ubiquitin-protein li 34.4 16 0.00053 29.3 1.6 24 67-93 333-356 (389)
71 1x3h_A Leupaxin; paxillin fami 31.0 20 0.00067 20.9 1.3 62 29-93 4-66 (80)
72 3t6p_A Baculoviral IAP repeat- 30.8 22 0.00077 27.5 1.9 15 80-94 306-321 (345)
73 1v87_A Deltex protein 2; ring- 30.7 10 0.00034 23.7 -0.1 21 39-59 81-101 (114)
74 1vd4_A Transcription initiatio 29.9 13 0.00046 20.5 0.4 40 39-79 13-52 (62)
75 2dlo_A Thyroid receptor-intera 29.4 22 0.00076 20.8 1.4 60 29-92 5-66 (81)
76 2ct0_A Non-SMC element 1 homol 28.5 12 0.0004 23.1 -0.0 19 40-58 52-70 (74)
77 3u28_C H/ACA ribonucleoprotein 28.5 42 0.0014 22.7 2.7 34 59-92 33-66 (114)
78 2k5c_A Uncharacterized protein 28.4 20 0.0007 23.5 1.1 43 40-82 8-67 (95)
79 2ab9_A Pro-SFTI-1; protein, be 28.0 16 0.00056 19.3 0.5 10 80-89 21-30 (31)
80 1x4l_A Skeletal muscle LIM-pro 26.9 25 0.00087 20.0 1.3 52 39-92 4-59 (72)
81 1wyh_A SLIM 2, skeletal muscle 26.1 22 0.00075 20.2 0.9 51 39-92 4-57 (72)
82 2d8x_A Protein pinch; LIM doma 25.7 15 0.00053 20.9 0.1 51 39-93 4-56 (70)
83 4b6a_t Probable metalloproteas 25.6 20 0.0007 30.5 0.9 49 4-71 484-533 (614)
84 2akl_A PHNA-like protein PA012 24.4 38 0.0013 23.8 1.9 26 40-74 27-52 (138)
85 2cur_A Skeletal muscle LIM-pro 24.4 29 0.001 19.6 1.2 51 39-93 4-56 (69)
86 1iml_A CRIP, cysteine rich int 24.0 21 0.00072 20.7 0.5 26 66-93 27-52 (76)
87 3vhs_A ATPase wrnip1; zinc fin 23.0 16 0.00053 19.2 -0.2 10 41-50 7-16 (29)
88 1x61_A Thyroid receptor intera 22.4 51 0.0018 18.6 2.0 52 39-93 4-58 (72)
89 1zfo_A LAsp-1; LIM domain, zin 22.2 27 0.00092 17.8 0.6 14 40-53 3-16 (31)
90 1a7i_A QCRP2 (LIM1); LIM domai 21.4 30 0.001 20.3 0.8 51 39-92 6-58 (81)
91 1fo5_A Thioredoxin; disulfide 21.2 63 0.0021 17.7 2.2 19 40-58 11-32 (85)
92 1x4k_A Skeletal muscle LIM-pro 21.1 18 0.00061 20.6 -0.3 50 40-92 5-57 (72)
93 1dl6_A Transcription factor II 21.0 34 0.0011 20.0 1.0 33 40-79 11-43 (58)
94 4a0k_B E3 ubiquitin-protein li 20.7 22 0.00077 23.5 0.2 46 39-96 47-93 (117)
95 3dpl_R Ring-box protein 1; ubi 20.5 42 0.0014 21.5 1.5 44 39-94 36-80 (106)
96 3lqv_P Splicing factor 3B subu 20.1 16 0.00053 20.6 -0.6 16 75-90 15-37 (39)
97 2m0e_A Zinc finger and BTB dom 20.0 39 0.0013 14.3 0.9 11 41-51 3-13 (29)
No 1
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.68 E-value=4.5e-06 Score=50.82 Aligned_cols=28 Identities=18% Similarity=0.393 Sum_probs=24.6
Q ss_pred EEEeccccccccCCCCceec-CCCceecccCC
Q psy16822 66 RLVCSISGLQFNEYNQPMVL-PNGYVYGEQEG 96 (97)
Q Consensus 66 ~LvC~iSg~vmde~N~P~~l-PNG~VYs~~aL 96 (97)
.++|+||+++|. +|+++ ++|+||.+++|
T Consensus 3 ~~~CpIs~~~m~---dPV~~~~sG~~yer~~I 31 (61)
T 2bay_A 3 HMLCAISGKVPR---RPVLSPKSRTIFEKSLL 31 (61)
T ss_dssp -CCCTTTCSCCS---SEEEETTTTEEEEHHHH
T ss_pred eEEecCCCCCCC---CCEEeCCCCcEEcHHHH
Confidence 578999999998 58999 99999998876
No 2
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=96.77 E-value=0.00016 Score=45.88 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=25.0
Q ss_pred cEEEeccccccccCCCCceecCCCceecccCC
Q psy16822 65 SRLVCSISGLQFNEYNQPMVLPNGYVYGEQEG 96 (97)
Q Consensus 65 S~LvC~iSg~vmde~N~P~~lPNG~VYs~~aL 96 (97)
..+.|+|++++|.+ |+++|.|++|.+.+|
T Consensus 13 ~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I 41 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD---PVRLPSGTVMDRSII 41 (85)
T ss_dssp TTTBCTTTCSBCSS---EEECTTSCEEEHHHH
T ss_pred hheECcccCchhcC---CeECCCCCEECHHHH
Confidence 46789999999975 999999999988765
No 3
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.77 E-value=0.00021 Score=45.94 Aligned_cols=30 Identities=23% Similarity=0.398 Sum_probs=25.3
Q ss_pred ccEEEeccccccccCCCCceecC-CCceecccCC
Q psy16822 64 QSRLVCSISGLQFNEYNQPMVLP-NGYVYGEQEG 96 (97)
Q Consensus 64 ~S~LvC~iSg~vmde~N~P~~lP-NG~VYs~~aL 96 (97)
...|+|+|++++|.+ |+++| .||+|.+.+|
T Consensus 5 ~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI 35 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK---PVKNKVCGHTYEEDAI 35 (94)
T ss_dssp SSCCBCTTTCSBCSS---EEEESSSCCEEEHHHH
T ss_pred CcEeECcCcCchhcC---CEEcCCCCCeecHHHH
Confidence 345789999999975 99997 9999988765
No 4
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=96.75 E-value=0.00016 Score=52.68 Aligned_cols=31 Identities=26% Similarity=0.333 Sum_probs=26.9
Q ss_pred cccEEEeccccccccCCCCceecCCCceecccCC
Q psy16822 63 NQSRLVCSISGLQFNEYNQPMVLPNGYVYGEQEG 96 (97)
Q Consensus 63 ~~S~LvC~iSg~vmde~N~P~~lPNG~VYs~~aL 96 (97)
..+.++|+||+++|.+ |+++|+|++|...+|
T Consensus 103 ip~~f~CPI~~elm~D---PV~~~~Ghtfer~~I 133 (179)
T 2f42_A 103 IPDYLCGKISFELMRE---PCITPSGITYDRKDI 133 (179)
T ss_dssp CCGGGBCTTTCSBCSS---EEECTTSCEEEHHHH
T ss_pred CcHhhcccCccccCCC---CeECCCCCEECHHHH
Confidence 3577899999999984 999999999988765
No 5
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=96.03 E-value=0.00079 Score=44.12 Aligned_cols=30 Identities=13% Similarity=0.227 Sum_probs=25.0
Q ss_pred ccEEEeccccccccCCCCceecCCCceecccCC
Q psy16822 64 QSRLVCSISGLQFNEYNQPMVLPNGYVYGEQEG 96 (97)
Q Consensus 64 ~S~LvC~iSg~vmde~N~P~~lPNG~VYs~~aL 96 (97)
...+.|+||+++|. .|+++|.|++|.+..|
T Consensus 27 p~~~~CpI~~~~m~---dPV~~~cGhtf~r~~I 56 (100)
T 2kre_A 27 PDEFRDPLMDTLMT---DPVRLPSGTIMDRSII 56 (100)
T ss_dssp STTTBCTTTCSBCS---SEEEETTTEEEEHHHH
T ss_pred cHhhCCcCccCccc---CCeECCCCCEEchHHH
Confidence 34678999999996 6999999999987654
No 6
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=95.91 E-value=0.001 Score=43.46 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=24.3
Q ss_pred cEEEeccccccccCCCCceecCCC-ceecccCC
Q psy16822 65 SRLVCSISGLQFNEYNQPMVLPNG-YVYGEQEG 96 (97)
Q Consensus 65 S~LvC~iSg~vmde~N~P~~lPNG-~VYs~~aL 96 (97)
..+.|+|++++|. .|+++|.| ++|.+..|
T Consensus 21 ~~~~CpI~~~~m~---dPV~~~cG~htf~r~cI 50 (98)
T 1wgm_A 21 DEFLDPIMSTLMC---DPVVLPSSRVTVDRSTI 50 (98)
T ss_dssp TTTBCTTTCSBCS---SEEECTTTCCEEEHHHH
T ss_pred HhcCCcCcccccc---CCeECCCCCeEECHHHH
Confidence 4578999999996 59999999 99987654
No 7
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=93.56 E-value=0.011 Score=35.56 Aligned_cols=28 Identities=21% Similarity=0.462 Sum_probs=20.0
Q ss_pred cEEEeccccccccCCCCceecCCCceecccC
Q psy16822 65 SRLVCSISGLQFNEYNQPMVLPNGYVYGEQE 95 (97)
Q Consensus 65 S~LvC~iSg~vmde~N~P~~lPNG~VYs~~a 95 (97)
+.+.|+|..++|. .|+++|.||+|....
T Consensus 7 ~~~~C~IC~~~~~---~Pv~~~CgH~fc~~C 34 (78)
T 1t1h_A 7 EYFRCPISLELMK---DPVIVSTGQTYERSS 34 (78)
T ss_dssp SSSSCTTTSCCCS---SEEEETTTEEEEHHH
T ss_pred ccCCCCCcccccc---CCEEcCCCCeecHHH
Confidence 4456777777764 488899999987654
No 8
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=93.44 E-value=0.012 Score=42.28 Aligned_cols=30 Identities=23% Similarity=0.353 Sum_probs=25.2
Q ss_pred ccEEEeccccccccCCCCceecCCCceecccCC
Q psy16822 64 QSRLVCSISGLQFNEYNQPMVLPNGYVYGEQEG 96 (97)
Q Consensus 64 ~S~LvC~iSg~vmde~N~P~~lPNG~VYs~~aL 96 (97)
-..+.|+|++++|. .|+++|.||+|....|
T Consensus 206 ~~~~~c~i~~~~~~---dPv~~~~gh~f~~~~i 235 (281)
T 2c2l_A 206 PDYLCGKISFELMR---EPCITPSGITYDRKDI 235 (281)
T ss_dssp CSTTBCTTTCSBCS---SEEECSSCCEEETTHH
T ss_pred CcccCCcCcCCHhc---CCeECCCCCEECHHHH
Confidence 35678999999995 6999999999987654
No 9
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.83 E-value=0.12 Score=30.24 Aligned_cols=48 Identities=25% Similarity=0.385 Sum_probs=36.6
Q ss_pred CCCCCCCCChhHHHhhhhCCCceecc---------cEEEeccccccccCCCCceecCCC
Q psy16822 39 RNKSCPVCMEPFNTLAKSLPYARCNQ---------SRLVCSISGLQFNEYNQPMVLPNG 88 (97)
Q Consensus 39 ~~~~CPvC~~~~~~La~~LP~ah~~~---------S~LvC~iSg~vmde~N~P~~lPNG 88 (97)
....||+|...+.+ ..+|-.|... ....|++-++.+.+.+..+++|+|
T Consensus 14 ~~~~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~~G 70 (70)
T 2ecn_A 14 DEEECCICMDGRAD--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESSGPSSG 70 (70)
T ss_dssp CCCCCSSSCCSCCS--EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCCCCCCC
T ss_pred CCCCCeeCCcCccC--cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCccccCCCC
Confidence 45789999988877 6677777643 345588888888888888888877
No 10
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.60 E-value=0.31 Score=27.94 Aligned_cols=15 Identities=13% Similarity=0.350 Sum_probs=11.6
Q ss_pred CCceecCCCceeccc
Q psy16822 80 NQPMVLPNGYVYGEQ 94 (97)
Q Consensus 80 N~P~~lPNG~VYs~~ 94 (97)
..|+++|.||+|-.+
T Consensus 31 ~~p~~~~CgH~fC~~ 45 (63)
T 2ysj_A 31 QKPVTIDCGHNFCLK 45 (63)
T ss_dssp SSCEECTTSSEECHH
T ss_pred CCeEEeCCCCcchHH
Confidence 358889999998654
No 11
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=86.67 E-value=0.11 Score=46.35 Aligned_cols=29 Identities=10% Similarity=0.190 Sum_probs=24.9
Q ss_pred cEEEeccccccccCCCCceecCCC-ceecccCC
Q psy16822 65 SRLVCSISGLQFNEYNQPMVLPNG-YVYGEQEG 96 (97)
Q Consensus 65 S~LvC~iSg~vmde~N~P~~lPNG-~VYs~~aL 96 (97)
..++|+||+++|. +|+++|.| +.|.+.+|
T Consensus 890 ~~F~cPIs~~lM~---DPVilpsG~~TydR~~I 919 (968)
T 3m62_A 890 DEFLDPLMYTIMK---DPVILPASKMNIDRSTI 919 (968)
T ss_dssp GGGBCTTTCSBCS---SEEECTTTCCEEEHHHH
T ss_pred HHhCCcchhhHHh---CCeEcCCCCEEECHHHH
Confidence 5688999999995 69999998 68988765
No 12
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.37 E-value=0.77 Score=26.72 Aligned_cols=13 Identities=15% Similarity=0.347 Sum_probs=8.9
Q ss_pred CceecCCCceecc
Q psy16822 81 QPMVLPNGYVYGE 93 (97)
Q Consensus 81 ~P~~lPNG~VYs~ 93 (97)
.|+++|.||+|-.
T Consensus 32 ~~~~~~CgH~fC~ 44 (73)
T 2ysl_A 32 KPVTIDCGHNFCL 44 (73)
T ss_dssp SEEECTTCCEEEH
T ss_pred CeEEcCCCChhhH
Confidence 4677777777754
No 13
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.07 E-value=0.79 Score=27.04 Aligned_cols=12 Identities=33% Similarity=1.135 Sum_probs=8.4
Q ss_pred CCCCCCCCChhH
Q psy16822 39 RNKSCPVCMEPF 50 (97)
Q Consensus 39 ~~~~CPvC~~~~ 50 (97)
....||+|...+
T Consensus 18 ~~~~C~IC~~~~ 29 (85)
T 2ecv_A 18 EEVTCPICLELL 29 (85)
T ss_dssp CCCCCTTTCSCC
T ss_pred CCCCCCCCCccc
Confidence 457788886665
No 14
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.29 E-value=0.46 Score=26.40 Aligned_cols=15 Identities=13% Similarity=0.481 Sum_probs=10.5
Q ss_pred CCceecCCCceeccc
Q psy16822 80 NQPMVLPNGYVYGEQ 94 (97)
Q Consensus 80 N~P~~lPNG~VYs~~ 94 (97)
..|+++|.||+|-.+
T Consensus 26 ~~p~~~~CgH~fC~~ 40 (58)
T 2ecj_A 26 KEPVIIECGHNFCKA 40 (58)
T ss_dssp SSCCCCSSCCCCCHH
T ss_pred CccEeCCCCCccCHH
Confidence 346778888888543
No 15
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=82.98 E-value=0.65 Score=27.63 Aligned_cols=14 Identities=29% Similarity=0.696 Sum_probs=9.3
Q ss_pred CceecC-CCceeccc
Q psy16822 81 QPMVLP-NGYVYGEQ 94 (97)
Q Consensus 81 ~P~~lP-NG~VYs~~ 94 (97)
.|+++| .||+|-..
T Consensus 27 ~p~~~~~CgH~fC~~ 41 (74)
T 2yur_A 27 DAVVIPCCGNSYCDE 41 (74)
T ss_dssp TCEECSSSCCEECTT
T ss_pred CCeEcCCCCCHHHHH
Confidence 467777 67777543
No 16
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=82.57 E-value=0.5 Score=30.73 Aligned_cols=13 Identities=8% Similarity=-0.013 Sum_probs=8.5
Q ss_pred CceecCCCceecc
Q psy16822 81 QPMVLPNGYVYGE 93 (97)
Q Consensus 81 ~P~~lPNG~VYs~ 93 (97)
.|+++|.||+|-.
T Consensus 64 ~p~~~~CgH~fC~ 76 (124)
T 3fl2_A 64 RPITTVCQHNVCK 76 (124)
T ss_dssp SEEECTTSCEEEH
T ss_pred CcEEeeCCCcccH
Confidence 4666777777644
No 17
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=82.44 E-value=0.55 Score=27.75 Aligned_cols=12 Identities=33% Similarity=1.135 Sum_probs=8.7
Q ss_pred CCCCCCCCChhH
Q psy16822 39 RNKSCPVCMEPF 50 (97)
Q Consensus 39 ~~~~CPvC~~~~ 50 (97)
....||+|...+
T Consensus 18 ~~~~C~IC~~~~ 29 (85)
T 2ecw_A 18 EEVTCPICLELL 29 (85)
T ss_dssp TTTSCTTTCSCC
T ss_pred cCCCCcCCChhh
Confidence 457899997665
No 18
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=81.62 E-value=0.98 Score=25.95 Aligned_cols=12 Identities=33% Similarity=0.952 Sum_probs=9.0
Q ss_pred CCCCCCCCChhH
Q psy16822 39 RNKSCPVCMEPF 50 (97)
Q Consensus 39 ~~~~CPvC~~~~ 50 (97)
....||+|...+
T Consensus 4 ~~~~C~IC~~~~ 15 (68)
T 1chc_A 4 VAERCPICLEDP 15 (68)
T ss_dssp CCCCCSSCCSCC
T ss_pred CCCCCeeCCccc
Confidence 356899998776
No 19
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=81.44 E-value=0.45 Score=29.55 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=32.7
Q ss_pred CCCCCCCChhHHHhhhhCCCceecccEEEecccccccc-CCCCceecCC-Cceecc
Q psy16822 40 NKSCPVCMEPFNTLAKSLPYARCNQSRLVCSISGLQFN-EYNQPMVLPN-GYVYGE 93 (97)
Q Consensus 40 ~~~CPvC~~~~~~La~~LP~ah~~~S~LvC~iSg~vmd-e~N~P~~lPN-G~VYs~ 93 (97)
.-.||+|-..+.-. .....|+|+-.|..-- .|..|+|||+ .++.+.
T Consensus 10 iL~CP~ck~~L~~~--------~~~g~LvC~~c~~~YPI~dGIPvmL~~Ear~~~~ 57 (67)
T 2jny_A 10 VLACPKDKGPLRYL--------ESEQLLVNERLNLAYRIDDGIPVLLIDEATEWTP 57 (67)
T ss_dssp CCBCTTTCCBCEEE--------TTTTEEEETTTTEEEEEETTEECCCSSCCEECCC
T ss_pred HhCCCCCCCcCeEe--------CCCCEEEcCCCCccccCCCCEeeeChhHhcCCch
Confidence 35799997754221 1356899999998888 8899999987 444443
No 20
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=81.33 E-value=0.59 Score=31.13 Aligned_cols=15 Identities=7% Similarity=0.025 Sum_probs=11.4
Q ss_pred CCceecCCCceeccc
Q psy16822 80 NQPMVLPNGYVYGEQ 94 (97)
Q Consensus 80 N~P~~lPNG~VYs~~ 94 (97)
..|+++|.||+|-..
T Consensus 64 ~~~~~~~CgH~fc~~ 78 (138)
T 4ayc_A 64 IEAVTLNCAHSFCSY 78 (138)
T ss_dssp SSEEEETTSCEEEHH
T ss_pred CCceECCCCCCccHH
Confidence 347889999998654
No 21
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.07 E-value=0.81 Score=26.84 Aligned_cols=12 Identities=17% Similarity=0.761 Sum_probs=8.6
Q ss_pred CCCCCCCCChhH
Q psy16822 39 RNKSCPVCMEPF 50 (97)
Q Consensus 39 ~~~~CPvC~~~~ 50 (97)
....||+|...+
T Consensus 14 ~~~~C~IC~~~~ 25 (71)
T 2d8t_A 14 TVPECAICLQTC 25 (71)
T ss_dssp SCCBCSSSSSBC
T ss_pred CCCCCccCCccc
Confidence 456799997664
No 22
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.84 E-value=0.88 Score=27.26 Aligned_cols=15 Identities=27% Similarity=0.277 Sum_probs=11.8
Q ss_pred CCceecCCCceeccc
Q psy16822 80 NQPMVLPNGYVYGEQ 94 (97)
Q Consensus 80 N~P~~lPNG~VYs~~ 94 (97)
..|+++|.||+|-.+
T Consensus 30 ~~~~~~~CgH~fC~~ 44 (88)
T 2ct2_A 30 LRPKLLHCGHTICRQ 44 (88)
T ss_dssp SCEEECSSSCEEEHH
T ss_pred CCeEECCCCChhhHH
Confidence 348999999999654
No 23
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=79.31 E-value=0.75 Score=26.16 Aligned_cols=12 Identities=17% Similarity=0.379 Sum_probs=8.3
Q ss_pred CCCCCCCCChhH
Q psy16822 39 RNKSCPVCMEPF 50 (97)
Q Consensus 39 ~~~~CPvC~~~~ 50 (97)
....||+|...+
T Consensus 5 ~~~~C~IC~~~~ 16 (56)
T 1bor_A 5 QFLRCQQCQAEA 16 (56)
T ss_dssp CCSSCSSSCSSC
T ss_pred cCCCceEeCCcc
Confidence 346788887765
No 24
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=78.76 E-value=0.45 Score=30.36 Aligned_cols=54 Identities=19% Similarity=0.281 Sum_probs=35.8
Q ss_pred CCCCCCCCChhHHHhhhhCCCceecccEEEeccccccccC----CCCceecCCCceeccc
Q psy16822 39 RNKSCPVCMEPFNTLAKSLPYARCNQSRLVCSISGLQFNE----YNQPMVLPNGYVYGEQ 94 (97)
Q Consensus 39 ~~~~CPvC~~~~~~La~~LP~ah~~~S~LvC~iSg~vmde----~N~P~~lPNG~VYs~~ 94 (97)
....||+|...+..-.. .........+.|+|-.+.+++ ...++.++.||+|-..
T Consensus 47 ~~~~CP~Cr~~~~~~~l--~~l~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~ 104 (133)
T 4ap4_A 47 NANTCPTCRKKINHKRY--HPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQ 104 (133)
T ss_dssp TCSBCTTTCCBCTTTCE--EECBCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHH
T ss_pred hCCCCCCCCCcCccccc--cccccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHH
Confidence 44689999888753211 112234566778888877764 4566899999999543
No 25
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=77.75 E-value=0.66 Score=29.66 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=10.9
Q ss_pred CCceecCCCceeccc
Q psy16822 80 NQPMVLPNGYVYGEQ 94 (97)
Q Consensus 80 N~P~~lPNG~VYs~~ 94 (97)
..|+++|.||+|-..
T Consensus 26 ~~p~~~~CgH~fC~~ 40 (115)
T 3l11_A 26 VEPVTLPCNHTLCKP 40 (115)
T ss_dssp SSCEECTTSCEECHH
T ss_pred CceeEcCCCCHHhHH
Confidence 347888888888653
No 26
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=76.87 E-value=0.87 Score=29.39 Aligned_cols=15 Identities=13% Similarity=0.282 Sum_probs=9.6
Q ss_pred Cceec-CCCceecccC
Q psy16822 81 QPMVL-PNGYVYGEQE 95 (97)
Q Consensus 81 ~P~~l-PNG~VYs~~a 95 (97)
.|+++ |.||+|-..-
T Consensus 34 ~pv~~~~CgH~fC~~C 49 (117)
T 1jm7_B 34 EPVCLGGCEHIFCSNC 49 (117)
T ss_dssp SCBCCCSSSCCBCTTT
T ss_pred CccEeCCCCCHHHHHH
Confidence 46666 7777775543
No 27
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=76.83 E-value=2.4 Score=23.66 Aligned_cols=14 Identities=36% Similarity=1.096 Sum_probs=10.2
Q ss_pred CCCCCCCChhHHHh
Q psy16822 40 NKSCPVCMEPFNTL 53 (97)
Q Consensus 40 ~~~CPvC~~~~~~L 53 (97)
...||+|...+.+-
T Consensus 3 ~~~C~IC~~~~~~~ 16 (64)
T 2xeu_A 3 MVSCPICMDGYSEI 16 (64)
T ss_dssp CCBCTTTCCBHHHH
T ss_pred CCCCCccChhhhCc
Confidence 46799998887553
No 28
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=76.73 E-value=0.54 Score=29.18 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=30.0
Q ss_pred CCCCCCChhHHHhhhhCCCceecccEEEecccccccc-CCCCceecCC
Q psy16822 41 KSCPVCMEPFNTLAKSLPYARCNQSRLVCSISGLQFN-EYNQPMVLPN 87 (97)
Q Consensus 41 ~~CPvC~~~~~~La~~LP~ah~~~S~LvC~iSg~vmd-e~N~P~~lPN 87 (97)
-.||+|...+.-- .....|+|+-.|..-. .|..|+|||+
T Consensus 9 L~CP~ck~~L~~~--------~~~~~LiC~~cg~~YPI~dGIPvmL~~ 48 (68)
T 2jr6_A 9 LVCPVTKGRLEYH--------QDKQELWSRQAKLAYPIKDGIPYMLEN 48 (68)
T ss_dssp CBCSSSCCBCEEE--------TTTTEEEETTTTEEEEEETTEECCCTT
T ss_pred eECCCCCCcCeEe--------CCCCEEEcCCCCcEecCCCCeeeeChh
Confidence 5799997654211 1357899999999888 8899999987
No 29
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=76.37 E-value=0.92 Score=28.45 Aligned_cols=10 Identities=40% Similarity=1.228 Sum_probs=7.0
Q ss_pred CCCCCCChhH
Q psy16822 41 KSCPVCMEPF 50 (97)
Q Consensus 41 ~~CPvC~~~~ 50 (97)
..||+|...+
T Consensus 22 ~~C~IC~~~~ 31 (112)
T 1jm7_A 22 LECPICLELI 31 (112)
T ss_dssp TSCSSSCCCC
T ss_pred CCCcccChhh
Confidence 5688887665
No 30
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=76.09 E-value=0.58 Score=36.09 Aligned_cols=31 Identities=16% Similarity=0.380 Sum_probs=25.4
Q ss_pred cccEEEeccccccccCCCCceec-CCCceecccCC
Q psy16822 63 NQSRLVCSISGLQFNEYNQPMVL-PNGYVYGEQEG 96 (97)
Q Consensus 63 ~~S~LvC~iSg~vmde~N~P~~l-PNG~VYs~~aL 96 (97)
..-.+.|+||+++| ..||.. ..||+|.+.+|
T Consensus 178 ~~~el~CPIcl~~f---~DPVts~~CGHsFcR~cI 209 (267)
T 3htk_C 178 GKIELTCPITCKPY---EAPLISRKCNHVFDRDGI 209 (267)
T ss_dssp SBCCSBCTTTSSBC---SSEEEESSSCCEEEHHHH
T ss_pred CceeeECcCccCcc---cCCeeeCCCCCcccHHHH
Confidence 45667899999999 678985 99999988665
No 31
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=75.90 E-value=1.1 Score=27.39 Aligned_cols=25 Identities=28% Similarity=0.582 Sum_probs=17.1
Q ss_pred EEeccccccccCCCCceecC-CCceeccc
Q psy16822 67 LVCSISGLQFNEYNQPMVLP-NGYVYGEQ 94 (97)
Q Consensus 67 LvC~iSg~vmde~N~P~~lP-NG~VYs~~ 94 (97)
+.|+|..++|. .|+++| .||+|-..
T Consensus 14 ~~C~IC~~~~~---~p~~~~~CgH~fC~~ 39 (92)
T 3ztg_A 14 LLCLICKDIMT---DAVVIPCCGNSYCDE 39 (92)
T ss_dssp TEETTTTEECS---SCEECTTTCCEECHH
T ss_pred CCCCCCChhhc---CceECCCCCCHHHHH
Confidence 44555555554 589999 79999654
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=75.63 E-value=0.69 Score=27.26 Aligned_cols=14 Identities=21% Similarity=0.340 Sum_probs=10.1
Q ss_pred CceecCCCceeccc
Q psy16822 81 QPMVLPNGYVYGEQ 94 (97)
Q Consensus 81 ~P~~lPNG~VYs~~ 94 (97)
.|+++|.||+|-..
T Consensus 24 ~p~~l~CgH~fC~~ 37 (79)
T 2egp_A 24 EPLSLDCGHSLCRA 37 (79)
T ss_dssp SCCCCSSSCCCCHH
T ss_pred CeeECCCCCHHHHH
Confidence 37778888888543
No 33
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=74.75 E-value=0.52 Score=29.27 Aligned_cols=39 Identities=28% Similarity=0.575 Sum_probs=29.5
Q ss_pred CCCCCCChhHHHhhhhCCCceecccEEEecccccccc-CCCCceecCC
Q psy16822 41 KSCPVCMEPFNTLAKSLPYARCNQSRLVCSISGLQFN-EYNQPMVLPN 87 (97)
Q Consensus 41 ~~CPvC~~~~~~La~~LP~ah~~~S~LvC~iSg~vmd-e~N~P~~lPN 87 (97)
-.||+|...+.-- .....|+|+-.|..-. .|..|+|||+
T Consensus 9 L~CP~ck~~L~~~--------~~~~~LiC~~cg~~YPI~dGIPvmL~~ 48 (68)
T 2hf1_A 9 LVCPLCKGPLVFD--------KSKDELICKGDRLAFPIKDGIPMMLES 48 (68)
T ss_dssp CBCTTTCCBCEEE--------TTTTEEEETTTTEEEEEETTEECCCGG
T ss_pred eECCCCCCcCeEe--------CCCCEEEcCCCCcEecCCCCeeeeChh
Confidence 4699997654211 1357899999999888 8899999987
No 34
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=73.96 E-value=0.54 Score=29.33 Aligned_cols=39 Identities=31% Similarity=0.585 Sum_probs=30.2
Q ss_pred CCCCCCChhHHHhhhhCCCceecccEEEecccccccc-CCCCceecCC
Q psy16822 41 KSCPVCMEPFNTLAKSLPYARCNQSRLVCSISGLQFN-EYNQPMVLPN 87 (97)
Q Consensus 41 ~~CPvC~~~~~~La~~LP~ah~~~S~LvC~iSg~vmd-e~N~P~~lPN 87 (97)
-.||+|...+.-- .....|+|+-.|..-. .|..|+|||+
T Consensus 9 L~CP~ck~~L~~~--------~~~~~LiC~~cg~~YPI~dGIPvmL~~ 48 (70)
T 2js4_A 9 LVCPVCKGRLEFQ--------RAQAELVCNADRLAFPVRDGVPIMLEA 48 (70)
T ss_dssp CBCTTTCCBEEEE--------TTTTEEEETTTTEEEEEETTEECCCGG
T ss_pred eECCCCCCcCEEe--------CCCCEEEcCCCCceecCCCCeeeeChh
Confidence 5799998765321 1357899999999888 8899999987
No 35
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.21 E-value=4 Score=22.98 Aligned_cols=34 Identities=24% Similarity=0.515 Sum_probs=22.6
Q ss_pred CCCCCCCCChhHHHhhhhCCCceecccEEEeccccccccCCCCceecCCCceeccc
Q psy16822 39 RNKSCPVCMEPFNTLAKSLPYARCNQSRLVCSISGLQFNEYNQPMVLPNGYVYGEQ 94 (97)
Q Consensus 39 ~~~~CPvC~~~~~~La~~LP~ah~~~S~LvC~iSg~vmde~N~P~~lPNG~VYs~~ 94 (97)
....||+|...+.+-. ...+.++++|.||+|-.+
T Consensus 14 ~~~~C~IC~~~~~~~~----------------------~~~~~~~~~~CgH~fc~~ 47 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIV----------------------QNGRLIVSTECGHVFCSQ 47 (69)
T ss_dssp CCCCCTTTCCCHHHHT----------------------TTTCCEEECSSSCEEEHH
T ss_pred CCCCCcccCccccccc----------------------cccCCeEeCCCCChhcHH
Confidence 4578999988875432 123455778888888543
No 36
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=72.60 E-value=1.5 Score=27.96 Aligned_cols=13 Identities=8% Similarity=0.194 Sum_probs=8.3
Q ss_pred CceecCCCceecc
Q psy16822 81 QPMVLPNGYVYGE 93 (97)
Q Consensus 81 ~P~~lPNG~VYs~ 93 (97)
.|+.+|.||+|-.
T Consensus 35 ~p~~~~CgH~fC~ 47 (116)
T 1rmd_A 35 DPVETSCKHLFCR 47 (116)
T ss_dssp SEEECTTSCEEEH
T ss_pred CcEEcCCCCcccH
Confidence 4666777777644
No 37
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=72.53 E-value=0.66 Score=28.86 Aligned_cols=40 Identities=23% Similarity=0.605 Sum_probs=30.2
Q ss_pred CCCCCCCChhHHHhhhhCCCceecccEEEecccccccc-CCCCceecCC
Q psy16822 40 NKSCPVCMEPFNTLAKSLPYARCNQSRLVCSISGLQFN-EYNQPMVLPN 87 (97)
Q Consensus 40 ~~~CPvC~~~~~~La~~LP~ah~~~S~LvC~iSg~vmd-e~N~P~~lPN 87 (97)
.-.||+|...+.- ......|+|+-.|..-. .|..|+|||+
T Consensus 8 iL~CP~ck~~L~~--------~~~~~~LiC~~cg~~YPI~dGIPvmL~~ 48 (69)
T 2pk7_A 8 ILACPICKGPLKL--------SADKTELISKGAGLAYPIRDGIPVMLES 48 (69)
T ss_dssp TCCCTTTCCCCEE--------CTTSSEEEETTTTEEEEEETTEECCCGG
T ss_pred heeCCCCCCcCeE--------eCCCCEEEcCCCCcEecCcCCeeeeChh
Confidence 3579999865431 11357899999999888 8899999987
No 38
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=70.46 E-value=1.8 Score=29.56 Aligned_cols=24 Identities=13% Similarity=0.047 Sum_probs=13.6
Q ss_pred EEeccccccccCCCCceecCCCceecc
Q psy16822 67 LVCSISGLQFNEYNQPMVLPNGYVYGE 93 (97)
Q Consensus 67 LvC~iSg~vmde~N~P~~lPNG~VYs~ 93 (97)
+.|+|-.+++. .|+.+|.||+|-.
T Consensus 79 ~~C~IC~~~~~---~pv~~~CgH~fC~ 102 (150)
T 1z6u_A 79 FMCVCCQELVY---QPVTTECFHNVCK 102 (150)
T ss_dssp TBCTTTSSBCS---SEEECTTSCEEEH
T ss_pred CEeecCChhhc---CCEEcCCCCchhH
Confidence 34555544443 4666777777654
No 39
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=69.18 E-value=3.1 Score=22.66 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=13.4
Q ss_pred CCCCceecCCCceeccc
Q psy16822 78 EYNQPMVLPNGYVYGEQ 94 (97)
Q Consensus 78 e~N~P~~lPNG~VYs~~ 94 (97)
.++.++++|.||+|-.+
T Consensus 18 ~~~~~~~~~CgH~fc~~ 34 (55)
T 2ecm_A 18 SRVVAHVLPCGHLLHRT 34 (55)
T ss_dssp TTSCEEECTTSCEEETT
T ss_pred CCcCeEecCCCCcccHH
Confidence 35678899999999654
No 40
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=68.74 E-value=3.2 Score=23.82 Aligned_cols=17 Identities=18% Similarity=0.114 Sum_probs=12.4
Q ss_pred CCCCceecCCCceeccc
Q psy16822 78 EYNQPMVLPNGYVYGEQ 94 (97)
Q Consensus 78 e~N~P~~lPNG~VYs~~ 94 (97)
+.+.++.+|.||+|-..
T Consensus 26 ~~~~~~~~~C~H~fc~~ 42 (69)
T 2kiz_A 26 EGEDVRRLPCMHLFHQV 42 (69)
T ss_dssp SSSCEEECTTSCEEEHH
T ss_pred CCCcEEEeCCCCHHHHH
Confidence 34567889999998543
No 41
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.20 E-value=2 Score=25.65 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=9.6
Q ss_pred CceecCCCceeccc
Q psy16822 81 QPMVLPNGYVYGEQ 94 (97)
Q Consensus 81 ~P~~lPNG~VYs~~ 94 (97)
.|+++|.||+|-..
T Consensus 27 ~p~~~~CgH~fC~~ 40 (81)
T 2csy_A 27 NPVVTKCRHYFCES 40 (81)
T ss_dssp SEEECTTSCEEEHH
T ss_pred CeeEccCCCHhHHH
Confidence 36778888887543
No 42
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=67.60 E-value=2.3 Score=26.66 Aligned_cols=13 Identities=0% Similarity=-0.258 Sum_probs=8.4
Q ss_pred Ccee-cCCCceecc
Q psy16822 81 QPMV-LPNGYVYGE 93 (97)
Q Consensus 81 ~P~~-lPNG~VYs~ 93 (97)
.|+. +|.||+|-.
T Consensus 34 ~p~~~~~CgH~FC~ 47 (100)
T 3lrq_A 34 DARLCPHCSKLCCF 47 (100)
T ss_dssp SEEECTTTCCEEEH
T ss_pred CccccCCCCChhhH
Confidence 3566 777777744
No 43
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.05 E-value=1.9 Score=26.22 Aligned_cols=41 Identities=10% Similarity=0.177 Sum_probs=24.0
Q ss_pred CCCCCCCCChhHHHhhhhCCCceecccEEEeccccccccCCCCceecC-CCceeccc
Q psy16822 39 RNKSCPVCMEPFNTLAKSLPYARCNQSRLVCSISGLQFNEYNQPMVLP-NGYVYGEQ 94 (97)
Q Consensus 39 ~~~~CPvC~~~~~~La~~LP~ah~~~S~LvC~iSg~vmde~N~P~~lP-NG~VYs~~ 94 (97)
....|++|...|.+- |.|--+....++.++++| .||+|-.+
T Consensus 14 ~~~~C~IC~~~~~~~---------------C~iC~~~~~~~~~~~~~~~C~H~FH~~ 55 (81)
T 2ecl_A 14 ECDTCAICRVQVMDA---------------CLRCQAENKQEDCVVVWGECNHSFHNC 55 (81)
T ss_dssp CCSCBTTTTBCTTSC---------------CTTHHHHTCTTTCCEEEETTSCEEEHH
T ss_pred CCCCCcccChhhhcc---------------CcccccccCCCceEEEeCCCCCccChH
Confidence 346688887766331 444333344455566665 89988653
No 44
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.56 E-value=2.9 Score=23.90 Aligned_cols=13 Identities=23% Similarity=0.268 Sum_probs=8.2
Q ss_pred CceecCCCceecc
Q psy16822 81 QPMVLPNGYVYGE 93 (97)
Q Consensus 81 ~P~~lPNG~VYs~ 93 (97)
.|+++|.||+|-.
T Consensus 27 ~p~~~~CgH~fC~ 39 (66)
T 2ecy_A 27 SPKQTECGHRFCE 39 (66)
T ss_dssp SCCCCSSSCCCCH
T ss_pred CeeECCCCCHHHH
Confidence 4566777777644
No 45
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=66.15 E-value=4.3 Score=22.11 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=12.5
Q ss_pred cCCCCceecC-CCceeccc
Q psy16822 77 NEYNQPMVLP-NGYVYGEQ 94 (97)
Q Consensus 77 de~N~P~~lP-NG~VYs~~ 94 (97)
.+.+.++.+| .||+|-..
T Consensus 16 ~~~~~~~~~~~C~H~f~~~ 34 (55)
T 1iym_A 16 EDGEEARFLPRCGHGFHAE 34 (55)
T ss_dssp CTTSCCEECSSSCCEECTT
T ss_pred cCCCceEECCCCCCcccHH
Confidence 3445677787 99998654
No 46
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=63.68 E-value=1.4 Score=29.23 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=23.9
Q ss_pred CCceecccEEEecccccccc-CCCCceecCC
Q psy16822 58 PYARCNQSRLVCSISGLQFN-EYNQPMVLPN 87 (97)
Q Consensus 58 P~ah~~~S~LvC~iSg~vmd-e~N~P~~lPN 87 (97)
|-.-.....|+|+-.|..-- .|..|+|||+
T Consensus 45 ~~~e~~~~~LvC~~c~~~YPI~dGIPvmL~~ 75 (97)
T 2k5r_A 45 IQNQSLHEALITRDRKQVFRIEDSIPVLLPE 75 (97)
T ss_dssp BCCCCCSEEEECTTSCEEEEEETTEEECCGG
T ss_pred ccccccCCeEEcCCCCCCccccCCCcccChH
Confidence 34444467899999999888 8899999987
No 47
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=63.51 E-value=2.9 Score=28.24 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=9.0
Q ss_pred CCceecCCCceecc
Q psy16822 80 NQPMVLPNGYVYGE 93 (97)
Q Consensus 80 N~P~~lPNG~VYs~ 93 (97)
..|+.++.|++|-.
T Consensus 42 ~~pv~~~CgH~FC~ 55 (141)
T 3knv_A 42 RRPFQAQCGHRYCS 55 (141)
T ss_dssp SSEEECTTSCEEEH
T ss_pred cCcEECCCCCccCH
Confidence 44577777777743
No 48
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=62.17 E-value=1.8 Score=25.72 Aligned_cols=38 Identities=26% Similarity=0.722 Sum_probs=27.2
Q ss_pred CCCCCCChhHHHhhhhCCCceecccEEEec--ccccccc-CCCCceecCCC
Q psy16822 41 KSCPVCMEPFNTLAKSLPYARCNQSRLVCS--ISGLQFN-EYNQPMVLPNG 88 (97)
Q Consensus 41 ~~CPvC~~~~~~La~~LP~ah~~~S~LvC~--iSg~vmd-e~N~P~~lPNG 88 (97)
-.||+|...+.- . ...|+|+ -.|..-- .|..|+||++-
T Consensus 11 L~CP~c~~~L~~-~---------~~~L~C~~~~c~~~YPI~dGIPvlL~~e 51 (56)
T 2kpi_A 11 LACPACHAPLEE-R---------DAELICTGQDCGLAYPVRDGIPVLLVDE 51 (56)
T ss_dssp CCCSSSCSCEEE-E---------TTEEEECSSSCCCEEEEETTEECCCTTT
T ss_pred eeCCCCCCccee-c---------CCEEEcCCcCCCcEEeeECCEeeeCHHH
Confidence 579999876421 1 1778999 7887776 77888888763
No 49
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.81 E-value=3.2 Score=24.64 Aligned_cols=10 Identities=40% Similarity=0.986 Sum_probs=6.3
Q ss_pred CCCCCCChhH
Q psy16822 41 KSCPVCMEPF 50 (97)
Q Consensus 41 ~~CPvC~~~~ 50 (97)
..||+|...+
T Consensus 26 ~~C~IC~~~~ 35 (75)
T 2ecg_A 26 KLCKICMDRN 35 (75)
T ss_dssp HSCSSSCSSC
T ss_pred CCCCcCCCCC
Confidence 4677776553
No 50
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=60.50 E-value=5.1 Score=22.76 Aligned_cols=11 Identities=27% Similarity=1.081 Sum_probs=7.5
Q ss_pred CCCCCCCCh-hH
Q psy16822 40 NKSCPVCME-PF 50 (97)
Q Consensus 40 ~~~CPvC~~-~~ 50 (97)
...||+|.. .+
T Consensus 3 ~~~C~IC~~~~~ 14 (65)
T 1g25_A 3 DQGCPRCKTTKY 14 (65)
T ss_dssp TTCCSTTTTHHH
T ss_pred CCcCCcCCCCcc
Confidence 356888876 44
No 51
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=59.80 E-value=6.4 Score=23.01 Aligned_cols=16 Identities=13% Similarity=0.200 Sum_probs=10.1
Q ss_pred CCceecCCCceecccC
Q psy16822 80 NQPMVLPNGYVYGEQE 95 (97)
Q Consensus 80 N~P~~lPNG~VYs~~a 95 (97)
...+.+|.||+|-.+-
T Consensus 29 ~~~~~~~C~H~fc~~C 44 (78)
T 2ect_A 29 ESVRQLPCNHLFHDSC 44 (78)
T ss_dssp SCEEECTTSCEEETTT
T ss_pred CCEEEeCCCCeecHHH
Confidence 3445677888876543
No 52
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=55.59 E-value=5.1 Score=24.62 Aligned_cols=21 Identities=10% Similarity=0.129 Sum_probs=14.5
Q ss_pred ccccCCCCceecCCCceeccc
Q psy16822 74 LQFNEYNQPMVLPNGYVYGEQ 94 (97)
Q Consensus 74 ~vmde~N~P~~lPNG~VYs~~ 94 (97)
+.+.+++.+..+|.||+|-..
T Consensus 48 ~~~~~~~~~~~l~C~H~Fh~~ 68 (91)
T 2l0b_A 48 SEYVKGDVATELPCHHYFHKP 68 (91)
T ss_dssp EECCTTCEEEEETTTEEEEHH
T ss_pred hhhcCCCcEEecCCCChHHHH
Confidence 333445667889999998653
No 53
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=55.43 E-value=4.8 Score=23.90 Aligned_cols=14 Identities=14% Similarity=0.173 Sum_probs=9.4
Q ss_pred CCceecCCCce-ecc
Q psy16822 80 NQPMVLPNGYV-YGE 93 (97)
Q Consensus 80 N~P~~lPNG~V-Ys~ 93 (97)
..|+.+|.||+ |-.
T Consensus 35 ~~~~~~pCgH~~~C~ 49 (74)
T 4ic3_A 35 IAIVFVPCGHLVTCK 49 (74)
T ss_dssp CCEEEETTCCBCCCH
T ss_pred CCEEEcCCCChhHHH
Confidence 45677788887 643
No 54
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.43 E-value=8.8 Score=22.66 Aligned_cols=62 Identities=8% Similarity=0.115 Sum_probs=35.7
Q ss_pred ccccccccccCCCCCCCCChhHHHhhh-hCCCceecccEEEeccccccccCCCCceec-CCCceec
Q psy16822 29 PQCSSEVMETRNKSCPVCMEPFNTLAK-SLPYARCNQSRLVCSISGLQFNEYNQPMVL-PNGYVYG 92 (97)
Q Consensus 29 p~C~~~~~~~~~~~CPvC~~~~~~La~-~LP~ah~~~S~LvC~iSg~vmde~N~P~~l-PNG~VYs 92 (97)
+.|..+........|..|.+.+.+..- .+-..-| ..-+.|..-++.+++.. .+.+ .+|.+|-
T Consensus 4 ~yC~~~y~~~~~~~C~~C~~~I~~~~~~a~~~~~H-~~CF~C~~C~~~L~~g~-~f~~~~~~~~~C 67 (81)
T 1x6a_A 4 GSSGKDYWGKFGEFCHGCSLLMTGPFMVAGEFKYH-PECFACMSCKVIIEDGD-AYALVQHATLYC 67 (81)
T ss_dssp CCCCCCSSCCSSCBCTTTCCBCCSCCBCCTTCCBC-TTSCBCTTTCCBCCTTS-CEEECSSSCEEE
T ss_pred ccchhHHhhhcCCcCccCCCCcCceEEEECCceec-cccCCccCCCCccCCCC-cEEEeeCCEEEC
Confidence 445444322245789999987762211 1111111 24578999999887533 3554 7888884
No 55
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=54.81 E-value=4.2 Score=26.06 Aligned_cols=13 Identities=15% Similarity=0.342 Sum_probs=8.8
Q ss_pred CceecCCCceecc
Q psy16822 81 QPMVLPNGYVYGE 93 (97)
Q Consensus 81 ~P~~lPNG~VYs~ 93 (97)
.|+.+|.|++|-.
T Consensus 30 ~p~~~~CgH~fC~ 42 (118)
T 3hct_A 30 EAVQTPCGHRFCK 42 (118)
T ss_dssp SEEECTTSCEEEH
T ss_pred CeEECCcCChhhH
Confidence 4677777777754
No 56
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=53.45 E-value=4.6 Score=25.32 Aligned_cols=14 Identities=0% Similarity=-0.050 Sum_probs=10.6
Q ss_pred Cceec-CCCceeccc
Q psy16822 81 QPMVL-PNGYVYGEQ 94 (97)
Q Consensus 81 ~P~~l-PNG~VYs~~ 94 (97)
.|+.+ |.||+|-..
T Consensus 27 ~p~~~~~CgH~fC~~ 41 (108)
T 2ckl_A 27 DATTIIECLHSFCKT 41 (108)
T ss_dssp SEEEETTTCCEEEHH
T ss_pred CcCEeCCCCChhhHH
Confidence 47777 999998653
No 57
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=52.44 E-value=4.2 Score=27.54 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=13.9
Q ss_pred EEeccccccccCCCCceecCCCceecc
Q psy16822 67 LVCSISGLQFNEYNQPMVLPNGYVYGE 93 (97)
Q Consensus 67 LvC~iSg~vmde~N~P~~lPNG~VYs~ 93 (97)
|.|+|-.+++ ..|+.+|.|++|-.
T Consensus 19 ~~C~IC~~~~---~~pv~~~CgH~fC~ 42 (170)
T 3hcs_A 19 YECPICLMAL---REAVQTPCGHRFCK 42 (170)
T ss_dssp GBCTTTCSBC---SSEEECTTSCEEEH
T ss_pred CCCCCCChhh---cCcEECCCCCHHHH
Confidence 3444444444 34677888888754
No 58
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=52.20 E-value=5.1 Score=24.68 Aligned_cols=14 Identities=14% Similarity=0.169 Sum_probs=10.3
Q ss_pred Cceec-CCCceeccc
Q psy16822 81 QPMVL-PNGYVYGEQ 94 (97)
Q Consensus 81 ~P~~l-PNG~VYs~~ 94 (97)
.|+++ |.||+|-..
T Consensus 34 ~p~~~~~CgH~fC~~ 48 (99)
T 2y43_A 34 IAMIIPQCSHNYCSL 48 (99)
T ss_dssp SEEECTTTCCEEEHH
T ss_pred CcCEECCCCCHhhHH
Confidence 37777 899998653
No 59
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.01 E-value=9.9 Score=21.96 Aligned_cols=14 Identities=0% Similarity=-0.021 Sum_probs=10.3
Q ss_pred Cceec-CCCceeccc
Q psy16822 81 QPMVL-PNGYVYGEQ 94 (97)
Q Consensus 81 ~P~~l-PNG~VYs~~ 94 (97)
.|+++ |.||+|-.+
T Consensus 27 ~p~~~~~CgH~fC~~ 41 (72)
T 2djb_A 27 DATTITECLHTFCKS 41 (72)
T ss_dssp SCEECSSSCCEECHH
T ss_pred CcCEECCCCCHHHHH
Confidence 37776 999998654
No 60
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.86 E-value=8.8 Score=22.63 Aligned_cols=51 Identities=10% Similarity=0.122 Sum_probs=33.1
Q ss_pred CCCCCCCCChhHH--Hh-hhhCCCceecccEEEeccccccccCCCCceecCCCceec
Q psy16822 39 RNKSCPVCMEPFN--TL-AKSLPYARCNQSRLVCSISGLQFNEYNQPMVLPNGYVYG 92 (97)
Q Consensus 39 ~~~~CPvC~~~~~--~L-a~~LP~ah~~~S~LvC~iSg~vmde~N~P~~lPNG~VYs 92 (97)
....|..|.+.+. +. ...+-..-| ..-+.|..-++.++.. .+..-+|.+|-
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~a~~~~~H-~~CF~C~~C~~~L~~~--~~~~~~~~~yC 67 (82)
T 1x63_A 14 DSPKCKGCFKAIVAGDQNVEYKGTVWH-KDCFTCSNCKQVIGTG--SFFPKGEDFYC 67 (82)
T ss_dssp CSCBCSSSCCBCCSSSCEEECSSCEEE-TTTCCCSSSCCCCTTS--CEEEETTEEEE
T ss_pred cCCcCccCCcccccCceEEEECccccc-cccCchhhCCCccCCC--ccEeeCCEEEC
Confidence 4578999998875 22 112222222 3457888888888765 57778888884
No 61
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.53 E-value=9.1 Score=22.65 Aligned_cols=62 Identities=8% Similarity=0.092 Sum_probs=36.9
Q ss_pred ccccccccccCCCCCCCCChhHHH--h-hhhCCCceecccEEEeccccccccCCCCceecCCCceecc
Q psy16822 29 PQCSSEVMETRNKSCPVCMEPFNT--L-AKSLPYARCNQSRLVCSISGLQFNEYNQPMVLPNGYVYGE 93 (97)
Q Consensus 29 p~C~~~~~~~~~~~CPvC~~~~~~--L-a~~LP~ah~~~S~LvC~iSg~vmde~N~P~~lPNG~VYs~ 93 (97)
+.|.......-...|..|...+.. . .+.+--.-| ..-+.|..-++.+++ ..+..-+|.+|-+
T Consensus 4 ~yC~~~y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H-~~CF~C~~C~~~L~~--~~f~~~~~~~~C~ 68 (82)
T 2ehe_A 4 GSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFH-EGCFRCCRCQRSLAD--EPFTCQDSELLCN 68 (82)
T ss_dssp CCCCCCCCCCCSCBCTTTCCBCCSSCCBCCCSSCCCB-TTTSBCTTTCCBCSS--CCEEEETTEEEET
T ss_pred eechhHhCcccCCcCccCCCccccCcEEEEeCCcccc-ccCCeecCCCCccCC--CccEeeCCEEECH
Confidence 445444322345789999988752 1 111111122 245789999998874 3677888988843
No 62
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.06 E-value=9.5 Score=22.17 Aligned_cols=15 Identities=20% Similarity=0.220 Sum_probs=10.8
Q ss_pred CCceecCCCceeccc
Q psy16822 80 NQPMVLPNGYVYGEQ 94 (97)
Q Consensus 80 N~P~~lPNG~VYs~~ 94 (97)
+....+|.||+|-..
T Consensus 37 ~~~~~l~C~H~fh~~ 51 (75)
T 1x4j_A 37 QLLRVLPCNHEFHAK 51 (75)
T ss_dssp CEEEEETTTEEEETT
T ss_pred CeEEEECCCCHhHHH
Confidence 445778999998654
No 63
>3qdr_B Colicin-A; COLA, TOLA, complex, translocation, COLA binds to TOLA, METH protein transport-toxin complex; HET: MLY; 2.65A {Citrobacter freundii}
Probab=45.47 E-value=7.9 Score=23.71 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=16.2
Q ss_pred cccccccCCCCceecCCCcee
Q psy16822 71 ISGLQFNEYNQPMVLPNGYVY 91 (97)
Q Consensus 71 iSg~vmde~N~P~~lPNG~VY 91 (97)
..|.+|.|||--|+ |-|+-+
T Consensus 25 MNG~VMTedNSslV-p~G~g~ 44 (63)
T 3qdr_B 25 MNGTVMTADNSSMV-PYGRGF 44 (63)
T ss_dssp ETTEECCTTTCEEE-EETTEE
T ss_pred ccceEEeccCcccc-cCCccH
Confidence 57889999999988 888533
No 64
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=42.81 E-value=8.3 Score=25.93 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=15.0
Q ss_pred EeccccccccCCCCceec-CCCceeccc
Q psy16822 68 VCSISGLQFNEYNQPMVL-PNGYVYGEQ 94 (97)
Q Consensus 68 vC~iSg~vmde~N~P~~l-PNG~VYs~~ 94 (97)
.|+|..+.+. .|+.+ |.||+|-..
T Consensus 56 ~C~IC~~~~~---~p~~~~~CgH~fC~~ 80 (165)
T 2ckl_B 56 MCPICLDMLK---NTMTTKECLHRFCAD 80 (165)
T ss_dssp BCTTTSSBCS---SEEEETTTCCEEEHH
T ss_pred CCcccChHhh---CcCEeCCCCChhHHH
Confidence 4444444444 37776 999999654
No 65
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.17 E-value=18 Score=21.12 Aligned_cols=60 Identities=12% Similarity=0.123 Sum_probs=35.5
Q ss_pred cccccccccCCCCCCCCChhHHHhhhhC-CCceec-ccEEEeccccccccCCCCceecCCCceecc
Q psy16822 30 QCSSEVMETRNKSCPVCMEPFNTLAKSL-PYARCN-QSRLVCSISGLQFNEYNQPMVLPNGYVYGE 93 (97)
Q Consensus 30 ~C~~~~~~~~~~~CPvC~~~~~~La~~L-P~ah~~-~S~LvC~iSg~vmde~N~P~~lPNG~VYs~ 93 (97)
.|...........|..|.+.+.. +.+ .....- ..-+.|..-++.++. ..+..-+|.+|-+
T Consensus 5 yC~~cy~~~~~~~C~~C~~~I~~--~~v~a~~~~~H~~CF~C~~C~~~L~~--~~~~~~~~~~yC~ 66 (80)
T 2cuq_A 5 SSGPCYENKFAPRCARCSKTLTQ--GGVTYRDQPWHRECLVCTGCQTPLAG--QQFTSRDEDPYCV 66 (80)
T ss_dssp SCCCCCCCCSSCCCTTTCCCCCS--CCEESSSSEECTTTCBCSSSCCBCTT--CCEEECSSSEEEH
T ss_pred EcHHHHccccCCcCCCCCCEecC--cEEEECCchhhhhhCCcccCCCcCCC--CeeEeECCEEECH
Confidence 44444322345889999887642 211 011111 234789998988864 3678889998853
No 66
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.44 E-value=21 Score=20.44 Aligned_cols=12 Identities=42% Similarity=1.041 Sum_probs=8.7
Q ss_pred CCCCCCCCChhH
Q psy16822 39 RNKSCPVCMEPF 50 (97)
Q Consensus 39 ~~~~CPvC~~~~ 50 (97)
....||+|...+
T Consensus 14 ~~~~C~IC~~~~ 25 (74)
T 2ep4_A 14 LHELCAVCLEDF 25 (74)
T ss_dssp CSCBCSSSCCBC
T ss_pred CCCCCcCCCccc
Confidence 456799997765
No 67
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=37.44 E-value=10 Score=22.02 Aligned_cols=62 Identities=13% Similarity=0.208 Sum_probs=37.6
Q ss_pred ccccccccccCCCCCCCCChhHHH------hhhhCCCceecccEEEeccccccccCCCCceecCCCceecc
Q psy16822 29 PQCSSEVMETRNKSCPVCMEPFNT------LAKSLPYARCNQSRLVCSISGLQFNEYNQPMVLPNGYVYGE 93 (97)
Q Consensus 29 p~C~~~~~~~~~~~CPvC~~~~~~------La~~LP~ah~~~S~LvC~iSg~vmde~N~P~~lPNG~VYs~ 93 (97)
+.|...........|+.|.+.+.. ....+--.-| .+-+.|..-++.+.. ..+..-+|.+|-+
T Consensus 4 ~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H-~~CF~C~~C~~~L~~--~~f~~~~~~~yC~ 71 (77)
T 2egq_A 4 GSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWH-DYCFHCKKCSVNLAN--KRFVFHQEQVYCP 71 (77)
T ss_dssp SCCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEE-TTTCBCSSSCCBCTT--SCCCEETTEECCH
T ss_pred eEchhHhchhhCccCcccCCcccCCCCCceeEEECcceeC-cccCEehhcCCCCCC--CccEeECCEEECh
Confidence 445444322345899999998764 1112221222 244789888888874 3677888888843
No 68
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=36.53 E-value=20 Score=19.86 Aligned_cols=34 Identities=29% Similarity=0.630 Sum_probs=22.5
Q ss_pred CCCCCCCChhHHHhhhhCCCceecccEEEeccccccccCCC
Q psy16822 40 NKSCPVCMEPFNTLAKSLPYARCNQSRLVCSISGLQFNEYN 80 (97)
Q Consensus 40 ~~~CPvC~~~~~~La~~LP~ah~~~S~LvC~iSg~vmde~N 80 (97)
...||.|... +| =|. .....|||...|.+..|+-
T Consensus 5 ~~~CP~C~~~--~l----~~d-~~~gelvC~~CG~v~~e~~ 38 (50)
T 1pft_A 5 QKVCPACESA--EL----IYD-PERGEIVCAKCGYVIEENI 38 (50)
T ss_dssp CCSCTTTSCC--CE----EEE-TTTTEEEESSSCCBCCCCC
T ss_pred cEeCcCCCCc--ce----EEc-CCCCeEECcccCCcccccc
Confidence 4579999661 11 111 2356799999999887764
No 69
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=35.65 E-value=8.1 Score=21.90 Aligned_cols=34 Identities=24% Similarity=0.515 Sum_probs=22.9
Q ss_pred CCCCCCCCChhHHHhhhhCCCceecccEEEeccccccccCCCCceecCCCceeccc
Q psy16822 39 RNKSCPVCMEPFNTLAKSLPYARCNQSRLVCSISGLQFNEYNQPMVLPNGYVYGEQ 94 (97)
Q Consensus 39 ~~~~CPvC~~~~~~La~~LP~ah~~~S~LvC~iSg~vmde~N~P~~lPNG~VYs~~ 94 (97)
....||+|...+.+-. .....++++|.||+|-.+
T Consensus 9 ~~~~C~IC~~~~~~~~----------------------~~~~~~~~~~CgH~fc~~ 42 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIV----------------------QNGRLIVSTECGHVFCSQ 42 (71)
T ss_dssp TCCBCTTTCCBHHHHH----------------------TTTCCEEECTTSCEEEHH
T ss_pred CCCCCcccChhhhccc----------------------cccCCeEeCCCCChHhHH
Confidence 4577999988875431 123556788999988553
No 70
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=34.44 E-value=16 Score=29.28 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=15.2
Q ss_pred EEeccccccccCCCCceecCCCceecc
Q psy16822 67 LVCSISGLQFNEYNQPMVLPNGYVYGE 93 (97)
Q Consensus 67 LvC~iSg~vmde~N~P~~lPNG~VYs~ 93 (97)
..|+|-- +....|+.+|.||+|-.
T Consensus 333 ~~C~ICl---e~~~~pv~lpCGH~FC~ 356 (389)
T 2y1n_A 333 QLCKICA---ENDKDVKIEPCGHLMCT 356 (389)
T ss_dssp SBCTTTS---SSBCCEEEETTCCEECH
T ss_pred CCCCccC---cCCCCeEEeCCCChhhH
Confidence 3455542 22356888999999854
No 71
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.02 E-value=20 Score=20.93 Aligned_cols=62 Identities=13% Similarity=0.182 Sum_probs=35.7
Q ss_pred ccccccccccCCCCCCCCChhHHHhh-hhCCCceecccEEEeccccccccCCCCceecCCCceecc
Q psy16822 29 PQCSSEVMETRNKSCPVCMEPFNTLA-KSLPYARCNQSRLVCSISGLQFNEYNQPMVLPNGYVYGE 93 (97)
Q Consensus 29 p~C~~~~~~~~~~~CPvC~~~~~~La-~~LP~ah~~~S~LvC~iSg~vmde~N~P~~lPNG~VYs~ 93 (97)
+.|...........|..|...+..-. ..+-..-| ..-+.|..-++.+... .+..-+|.+|-+
T Consensus 4 ~yC~~~y~~~~~~~C~~C~~~I~~~~v~a~~~~~H-~~CF~C~~C~~~L~~~--~~~~~~~~~yC~ 66 (80)
T 1x3h_A 4 GSSGKDFLAMFSPKCGGCNRPVLENYLSAMDTVWH-PECFVCGDCFTSFSTG--SFFELDGRPFCE 66 (80)
T ss_dssp CCCCCCCCCCCSCBCTTTCCBCCSSCEEETTEEEC-TTTCBCSSSCCBSCSS--CCEESSSCEECH
T ss_pred ccchhHHhhhcCCccccCCCeecceeEEECCCeEe-cCcCChhhCCCCCCCC--cEEeECCEEECH
Confidence 34544432224578999998765310 01111111 2347899888888764 366778888843
No 72
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=30.82 E-value=22 Score=27.53 Aligned_cols=15 Identities=13% Similarity=0.290 Sum_probs=10.3
Q ss_pred CCceecCCCce-eccc
Q psy16822 80 NQPMVLPNGYV-YGEQ 94 (97)
Q Consensus 80 N~P~~lPNG~V-Ys~~ 94 (97)
..|+.+|.||+ +-..
T Consensus 306 ~~~v~lpCgH~~fC~~ 321 (345)
T 3t6p_A 306 VSVVFIPCGHLVVCQE 321 (345)
T ss_dssp CCEEEETTCCEEECTT
T ss_pred CceEEcCCCChhHhHH
Confidence 45677888888 6543
No 73
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=30.67 E-value=10 Score=23.74 Aligned_cols=21 Identities=19% Similarity=0.602 Sum_probs=15.1
Q ss_pred CCCCCCCCChhHHHhhhhCCC
Q psy16822 39 RNKSCPVCMEPFNTLAKSLPY 59 (97)
Q Consensus 39 ~~~~CPvC~~~~~~La~~LP~ 59 (97)
....||+|...+.+...+-|-
T Consensus 81 ~~~~CP~CR~~~~~~~g~qp~ 101 (114)
T 1v87_A 81 GSLQCPSCKTIYGEKTGTQPW 101 (114)
T ss_dssp SCCBCTTTCCBSSSCSSSCTT
T ss_pred CCCcCCCCCCccCCCCCCCCC
Confidence 467899999888766554443
No 74
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=29.91 E-value=13 Score=20.46 Aligned_cols=40 Identities=20% Similarity=0.398 Sum_probs=25.9
Q ss_pred CCCCCCCCChhHHHhhhhCCCceecccEEEeccccccccCC
Q psy16822 39 RNKSCPVCMEPFNTLAKSLPYARCNQSRLVCSISGLQFNEY 79 (97)
Q Consensus 39 ~~~~CPvC~~~~~~La~~LP~ah~~~S~LvC~iSg~vmde~ 79 (97)
+.-.|+.|...|.....-. -.|...-.+.|.+-|+.....
T Consensus 13 k~~~C~~C~k~F~~~~~l~-~~H~~~k~~~C~~C~k~f~~~ 52 (62)
T 1vd4_A 13 ASFKCPVCSSTFTDLEANQ-LFDPMTGTFRCTFCHTEVEED 52 (62)
T ss_dssp SEEECSSSCCEEEHHHHHH-HEETTTTEEBCSSSCCBCEEC
T ss_pred CCccCCCCCchhccHHHhH-hhcCCCCCEECCCCCCccccC
Confidence 3457999998766544332 445555568888888776543
No 75
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.40 E-value=22 Score=20.84 Aligned_cols=60 Identities=8% Similarity=0.240 Sum_probs=33.9
Q ss_pred ccccccccccCCCCCCCCChhHHHhhhhCCCceec-ccEEEeccccccccCCCCceec-CCCceec
Q psy16822 29 PQCSSEVMETRNKSCPVCMEPFNTLAKSLPYARCN-QSRLVCSISGLQFNEYNQPMVL-PNGYVYG 92 (97)
Q Consensus 29 p~C~~~~~~~~~~~CPvC~~~~~~La~~LP~ah~~-~S~LvC~iSg~vmde~N~P~~l-PNG~VYs 92 (97)
+.|..... .....|+.|...+.+..-. .....- .+-+.|..-++.++.. .+.. .+|.+|-
T Consensus 5 ~yC~~~y~-~~~~~C~~C~~~I~~~~~~-a~~~~~H~~CF~C~~C~~~L~~~--~f~~~~~g~~yC 66 (81)
T 2dlo_A 5 SSGEGCYV-ATLEKCATCSQPILDRILR-AMGKAYHPGCFTCVVCHRGLDGI--PFTVDATSQIHC 66 (81)
T ss_dssp CCCCCCCC-SSCCBCTTTCCBCCSCCEE-ETTEEECTTTCBCSSSCCBCTTS--CEECCTTCCCEE
T ss_pred EECHHHhh-cCCCccccCCCeecceeEE-ECCccccHHhcCcccCCCccCCC--eeEECCCCEEEC
Confidence 44544432 2568899999877531100 001111 2347888888888733 5655 3788884
No 76
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.53 E-value=12 Score=23.06 Aligned_cols=19 Identities=16% Similarity=0.364 Sum_probs=12.9
Q ss_pred CCCCCCCChhHHHhhhhCC
Q psy16822 40 NKSCPVCMEPFNTLAKSLP 58 (97)
Q Consensus 40 ~~~CPvC~~~~~~La~~LP 58 (97)
+..||.|..+|.-...++|
T Consensus 52 ~~~CP~Cr~~w~~~~~~~~ 70 (74)
T 2ct0_A 52 EPRCPHCNDYWPHEIPKSG 70 (74)
T ss_dssp SCCCTTTCSCCCSCCCCCC
T ss_pred CCCCCCCcCcCCCCCCCCC
Confidence 4789999887654444444
No 77
>3u28_C H/ACA ribonucleoprotein complex subunit 1; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_C
Probab=28.46 E-value=42 Score=22.71 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=24.5
Q ss_pred CceecccEEEeccccccccCCCCceecCCCceec
Q psy16822 59 YARCNQSRLVCSISGLQFNEYNQPMVLPNGYVYG 92 (97)
Q Consensus 59 ~ah~~~S~LvC~iSg~vmde~N~P~~lPNG~VYs 92 (97)
|.|-.+..|||+.+.+..--=|.|+.+-|..-.|
T Consensus 33 f~H~ceg~lV~k~~~~~VP~fNapVy~enK~~IG 66 (114)
T 3u28_C 33 FLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVG 66 (114)
T ss_dssp EEEEETTEEEEEECSSSEECTTCEEECTTCCEEE
T ss_pred EEEEeCCeEEEEeCCCCCCCCCCEeEccCCccce
Confidence 5788889999999876555667777776655443
No 78
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=28.41 E-value=20 Score=23.51 Aligned_cols=43 Identities=21% Similarity=0.515 Sum_probs=25.5
Q ss_pred CCCCCCCChh--HHHhhhhCCCce--------------ec-ccEEEeccccccccCCCCc
Q psy16822 40 NKSCPVCMEP--FNTLAKSLPYAR--------------CN-QSRLVCSISGLQFNEYNQP 82 (97)
Q Consensus 40 ~~~CPvC~~~--~~~La~~LP~ah--------------~~-~S~LvC~iSg~vmde~N~P 82 (97)
-.+||+|... +++|.+++=--- .. .=.+-|+.-||-.-..|.|
T Consensus 8 ~~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG~~Lp 67 (95)
T 2k5c_A 8 MAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGKTLP 67 (95)
T ss_dssp CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEETTSSC
T ss_pred cccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhcccCC
Confidence 4679999876 778887543211 11 1245677777665555544
No 79
>2ab9_A Pro-SFTI-1; protein, beta-sheet, random coil, hydrolase inhibitor; NMR {Helianthus annuus}
Probab=27.96 E-value=16 Score=19.30 Aligned_cols=10 Identities=30% Similarity=0.790 Sum_probs=7.7
Q ss_pred CCceecCCCc
Q psy16822 80 NQPMVLPNGY 89 (97)
Q Consensus 80 N~P~~lPNG~ 89 (97)
-||+.||+|+
T Consensus 21 ippicfpdgr 30 (31)
T 2ab9_A 21 IPPICFPDGR 30 (31)
T ss_dssp SSCSSSSCCC
T ss_pred CCCcccCCCC
Confidence 4788888886
No 80
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.94 E-value=25 Score=20.04 Aligned_cols=52 Identities=15% Similarity=0.306 Sum_probs=31.2
Q ss_pred CCCCCCCCChhHHHhh--hhCC-Cceec-ccEEEeccccccccCCCCceecCCCceec
Q psy16822 39 RNKSCPVCMEPFNTLA--KSLP-YARCN-QSRLVCSISGLQFNEYNQPMVLPNGYVYG 92 (97)
Q Consensus 39 ~~~~CPvC~~~~~~La--~~LP-~ah~~-~S~LvC~iSg~vmde~N~P~~lPNG~VYs 92 (97)
....|..|.+.+...+ +-+- ....- ..-+.|..-++.++ +..+..-+|.+|-
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~--~~~f~~~~g~~yC 59 (72)
T 1x4l_A 4 GSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLV--GRGFLTERDDILC 59 (72)
T ss_dssp CSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCT--TSCCEECSSSEEC
T ss_pred CCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCC--CCccEeECCEEEC
Confidence 3467888888776421 1110 11222 23478888888886 3457778888884
No 81
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.12 E-value=22 Score=20.20 Aligned_cols=51 Identities=16% Similarity=0.199 Sum_probs=30.5
Q ss_pred CCCCCCCCChhHHH---hhhhCCCceecccEEEeccccccccCCCCceecCCCceec
Q psy16822 39 RNKSCPVCMEPFNT---LAKSLPYARCNQSRLVCSISGLQFNEYNQPMVLPNGYVYG 92 (97)
Q Consensus 39 ~~~~CPvC~~~~~~---La~~LP~ah~~~S~LvC~iSg~vmde~N~P~~lPNG~VYs 92 (97)
....|..|...+.. ....+-..-| ..-+.|..-++.++.. .+..-+|.+|-
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H-~~CF~C~~C~~~L~~~--~~~~~~~~~yC 57 (72)
T 1wyh_A 4 GSSGCSACGETVMPGSRKLEYGGQTWH-EHCFLCSGCEQPLGSR--SFVPDKGAHYC 57 (72)
T ss_dssp CCCBCSSSCCBCCSSSCEECSTTCCEE-TTTCBCTTTCCBTTTS--CEEEETTEEEE
T ss_pred cCCCCccCCCccccCccEEEECccccC-cccCeECCCCCcCCCC--ccCCcCCeEEC
Confidence 34678888877652 1111111222 2457788888888754 47777888884
No 82
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.74 E-value=15 Score=20.92 Aligned_cols=51 Identities=12% Similarity=0.183 Sum_probs=29.6
Q ss_pred CCCCCCCCChhHHHhhhhC-CCceec-ccEEEeccccccccCCCCceecCCCceecc
Q psy16822 39 RNKSCPVCMEPFNTLAKSL-PYARCN-QSRLVCSISGLQFNEYNQPMVLPNGYVYGE 93 (97)
Q Consensus 39 ~~~~CPvC~~~~~~La~~L-P~ah~~-~S~LvC~iSg~vmde~N~P~~lPNG~VYs~ 93 (97)
....|..|...+.. +.+ .....- ..-+.|..-++.+++. .+...+|.+|-+
T Consensus 4 ~~~~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L~~~--~f~~~~g~~yC~ 56 (70)
T 2d8x_A 4 GSSGCHQCGEFIIG--RVIKAMNNSWHPECFRCDLCQEVLADI--GFVKNAGRHLCR 56 (70)
T ss_dssp CSSBCSSSCCBCCS--CCEEETTEEECTTTSBCSSSCCBCSSS--CCEEETTEEECH
T ss_pred CCCcCccCCCEecc--eEEEECcccccccCCEeCCCCCcCCCC--ccEeECCeEECH
Confidence 45678888776542 111 001111 2337788888888765 466778888843
No 83
>4b6a_t Probable metalloprotease ARX1; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae}
Probab=25.61 E-value=20 Score=30.46 Aligned_cols=49 Identities=27% Similarity=0.314 Sum_probs=13.4
Q ss_pred cccc-cCcccceeeEEecCccccccCccccccccccCCCCCCCCChhHHHhhhhCCCceecccEEEecc
Q psy16822 4 SQPL-AHGLDLIKVVSSPPGLSALKTPQCSSEVMETRNKSCPVCMEPFNTLAKSLPYARCNQSRLVCSI 71 (97)
Q Consensus 4 ~~pl-l~~~~~~~~~~l~aGlsaLKTp~C~~~~~~~~~~~CPvC~~~~~~La~~LP~ah~~~S~LvC~i 71 (97)
+.|| |+|++++|= +.|+|+||-..=.... +=+..+|.++-....++|.-
T Consensus 484 ~~~~~lpg~e~plp---~l~~s~~~lk~l~~~~----------------~~~~~~~~~re~~tv~~~~~ 533 (614)
T 4b6a_t 484 TSTLTLPGHELPLP---KLGVSAIKLKSLMNST----------------KESISLPVARECNTIVLCDS 533 (614)
T ss_dssp TTCC----------------------------------------------------EEEEEEEEEEEEE
T ss_pred cCcccCCCccccCc---ccchhHHHHHHHhhhc----------------ccccccccccccceEEecCC
Confidence 4576 888888765 8999999987643221 22346889999999999853
No 84
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=24.39 E-value=38 Score=23.79 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=15.4
Q ss_pred CCCCCCCChhHHHhhhhCCCceecccEEEeccccc
Q psy16822 40 NKSCPVCMEPFNTLAKSLPYARCNQSRLVCSISGL 74 (97)
Q Consensus 40 ~~~CPvC~~~~~~La~~LP~ah~~~S~LvC~iSg~ 74 (97)
-+.||-|..+ |.......+||+--|-
T Consensus 27 lP~CP~C~se---------ytYeDg~l~vCPeC~h 52 (138)
T 2akl_A 27 LPPCPQCNSE---------YTYEDGALLVCPECAH 52 (138)
T ss_dssp SCCCTTTCCC---------CCEECSSSEEETTTTE
T ss_pred CCCCCCCCCc---------ceEecCCeEECCcccc
Confidence 3666666543 5666666666665443
No 85
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.37 E-value=29 Score=19.60 Aligned_cols=51 Identities=12% Similarity=0.231 Sum_probs=30.1
Q ss_pred CCCCCCCCChhHHHhhhhCC-Cceec-ccEEEeccccccccCCCCceecCCCceecc
Q psy16822 39 RNKSCPVCMEPFNTLAKSLP-YARCN-QSRLVCSISGLQFNEYNQPMVLPNGYVYGE 93 (97)
Q Consensus 39 ~~~~CPvC~~~~~~La~~LP-~ah~~-~S~LvC~iSg~vmde~N~P~~lPNG~VYs~ 93 (97)
....|..|.+.+.. +.+- ....- ..-+.|..-++.++ +..+...+|.+|-+
T Consensus 4 ~~~~C~~C~~~I~~--~~~~a~~~~~H~~CF~C~~C~~~L~--~~~~~~~~~~~yC~ 56 (69)
T 2cur_A 4 GSSGCVKCNKAITS--GGITYQDQPWHADCFVCVTCSKKLA--GQRFTAVEDQYYCV 56 (69)
T ss_dssp CCCCCSSSCCCCCT--TCEEETTEEECTTTTBCTTTCCBCT--TSCEEECSSCEEEH
T ss_pred CcCCCcccCCEeCc--ceEEECccccccCcCEECCCCCCCC--CCccEeECCEEECH
Confidence 34678888877632 2110 01111 13367888888887 34577888888853
No 86
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=24.03 E-value=21 Score=20.70 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=17.3
Q ss_pred EEEeccccccccCCCCceecCCCceecc
Q psy16822 66 RLVCSISGLQFNEYNQPMVLPNGYVYGE 93 (97)
Q Consensus 66 ~LvC~iSg~vmde~N~P~~lPNG~VYs~ 93 (97)
-+.|..-++.++.. .+...+|.+|-+
T Consensus 27 CF~C~~C~~~L~~~--~~~~~~g~~yC~ 52 (76)
T 1iml_A 27 CLKCEKCGKTLTSG--GHAEHEGKPYCN 52 (76)
T ss_dssp TCBCTTTCCBCCTT--TEEEETTEEEET
T ss_pred CCCccccCccCCCC--ceECcCCeEeeC
Confidence 36677777777654 466677877754
No 87
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=22.97 E-value=16 Score=19.16 Aligned_cols=10 Identities=40% Similarity=1.079 Sum_probs=7.6
Q ss_pred CCCCCCChhH
Q psy16822 41 KSCPVCMEPF 50 (97)
Q Consensus 41 ~~CPvC~~~~ 50 (97)
..||+|...+
T Consensus 7 vqcpvcqq~m 16 (29)
T 3vhs_A 7 VQCPVCQQMM 16 (29)
T ss_dssp EECTTTCCEE
T ss_pred eeChHHHHhC
Confidence 5799997653
No 88
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.44 E-value=51 Score=18.60 Aligned_cols=52 Identities=21% Similarity=0.203 Sum_probs=32.2
Q ss_pred CCCCCCCCChhHHH---hhhhCCCceecccEEEeccccccccCCCCceecCCCceecc
Q psy16822 39 RNKSCPVCMEPFNT---LAKSLPYARCNQSRLVCSISGLQFNEYNQPMVLPNGYVYGE 93 (97)
Q Consensus 39 ~~~~CPvC~~~~~~---La~~LP~ah~~~S~LvC~iSg~vmde~N~P~~lPNG~VYs~ 93 (97)
....|..|.+.+.. ....+-..-|. .-+.|..-++.++ +..+...+|.+|-+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~-~CF~C~~C~~~L~--~~~~~~~~~~~yC~ 58 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGVVALDRVFHV-GCFVCSTCRAQLR--GQHFYAVERRAYCE 58 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCEECSSSEECT-TTCBCSSSCCBCT--TSCEEESSSCEEEH
T ss_pred CCCCCccCCCccCCCceEEEECCCeEcc-cCCcccccCCcCC--cCcCEeeCCeEECH
Confidence 45778888876642 22222222222 3578888888884 45577888888843
No 89
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=22.25 E-value=27 Score=17.75 Aligned_cols=14 Identities=21% Similarity=0.430 Sum_probs=10.7
Q ss_pred CCCCCCCChhHHHh
Q psy16822 40 NKSCPVCMEPFNTL 53 (97)
Q Consensus 40 ~~~CPvC~~~~~~L 53 (97)
+..||.|.+.....
T Consensus 3 ~~~C~~C~k~Vy~~ 16 (31)
T 1zfo_A 3 NPNCARCGKIVYPT 16 (31)
T ss_dssp CCBCSSSCSBCCGG
T ss_pred CCcCCccCCEEecc
Confidence 56899999886544
No 90
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=21.38 E-value=30 Score=20.29 Aligned_cols=51 Identities=10% Similarity=0.232 Sum_probs=31.0
Q ss_pred CCCCCCCCChhHH--HhhhhCCCceecccEEEeccccccccCCCCceecCCCceec
Q psy16822 39 RNKSCPVCMEPFN--TLAKSLPYARCNQSRLVCSISGLQFNEYNQPMVLPNGYVYG 92 (97)
Q Consensus 39 ~~~~CPvC~~~~~--~La~~LP~ah~~~S~LvC~iSg~vmde~N~P~~lPNG~VYs 92 (97)
....|..|.+.+. ++...+--.-| ..-+.|..-++.++..+ +..-+|.+|-
T Consensus 6 ~~~~C~~C~~~I~~~~~~~a~~~~~H-~~CF~C~~C~~~L~~~~--~~~~~~~~yC 58 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAEEVQCDGRSFH-RCCFLCMVCRKNLDSTT--VAIHDAEVYC 58 (81)
T ss_dssp --CBCSSSCCBCSSTTEEEETTEEEE-SSSEECSSSCCEECSSC--CEEETTEEEC
T ss_pred CCCcCcCcCccccCceeEEeCCcccc-cccCccCCCCCCCCCCC--eEeeCCEEEC
Confidence 4577899988763 22222211122 24588999999887653 6666888884
No 91
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=21.23 E-value=63 Score=17.70 Aligned_cols=19 Identities=26% Similarity=0.735 Sum_probs=13.8
Q ss_pred CCCCCCCChh---HHHhhhhCC
Q psy16822 40 NKSCPVCMEP---FNTLAKSLP 58 (97)
Q Consensus 40 ~~~CPvC~~~---~~~La~~LP 58 (97)
.+.||.|... +.++++..+
T Consensus 11 ~~~C~~C~~~~~~l~~~~~~~~ 32 (85)
T 1fo5_A 11 SPMCPHCPAAKRVVEEVANEMP 32 (85)
T ss_dssp CCCSSCCCTHHHHHHHHHHHCS
T ss_pred CCCCCchHHHHHHHHHHHHHcC
Confidence 4679999765 667777665
No 92
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.15 E-value=18 Score=20.63 Aligned_cols=50 Identities=6% Similarity=0.173 Sum_probs=28.9
Q ss_pred CCCCCCCChhHHH---hhhhCCCceecccEEEeccccccccCCCCceecCCCceec
Q psy16822 40 NKSCPVCMEPFNT---LAKSLPYARCNQSRLVCSISGLQFNEYNQPMVLPNGYVYG 92 (97)
Q Consensus 40 ~~~CPvC~~~~~~---La~~LP~ah~~~S~LvC~iSg~vmde~N~P~~lPNG~VYs 92 (97)
...|..|.+.+.. ....+-..-| ..-+.|..-++.++.. .+..-+|.+|-
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H-~~CF~C~~C~~~L~~~--~~~~~~~~~yC 57 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEYKGSSWH-ETCFICHRCQQPIGTK--SFIPKDNQNFC 57 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEETTEEEE-TTTTCCSSSCCCCCSS--SEEEETTEEEE
T ss_pred CCCCccCCCcccCCceEEEECcCeec-ccCCcccccCCccCCC--ccCccCCeEEC
Confidence 4678888776652 1111111112 2346777777777654 66777888874
No 93
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=20.97 E-value=34 Score=19.96 Aligned_cols=33 Identities=18% Similarity=0.408 Sum_probs=22.2
Q ss_pred CCCCCCCChhHHHhhhhCCCceecccEEEeccccccccCC
Q psy16822 40 NKSCPVCMEPFNTLAKSLPYARCNQSRLVCSISGLQFNEY 79 (97)
Q Consensus 40 ~~~CPvC~~~~~~La~~LP~ah~~~S~LvC~iSg~vmde~ 79 (97)
...||.|... +| -+. +....+||.-.|.|+.|+
T Consensus 11 ~~~Cp~C~~~--~l----v~D-~~~ge~vC~~CGlVl~e~ 43 (58)
T 1dl6_A 11 RVTCPNHPDA--IL----VED-YRAGDMICPECGLVVGDR 43 (58)
T ss_dssp CCSBTTBSSS--CC----EEC-SSSCCEECTTTCCEECCS
T ss_pred cccCcCCCCC--ce----eEe-CCCCeEEeCCCCCEEecc
Confidence 3479999652 12 222 356679999999998875
No 94
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=20.68 E-value=22 Score=23.53 Aligned_cols=46 Identities=9% Similarity=0.082 Sum_probs=0.9
Q ss_pred CCCCCCCCChhHHHhhhhCCCceecccEEEeccccccccCCC-CceecCCCceecccCC
Q psy16822 39 RNKSCPVCMEPFNTLAKSLPYARCNQSRLVCSISGLQFNEYN-QPMVLPNGYVYGEQEG 96 (97)
Q Consensus 39 ~~~~CPvC~~~~~~La~~LP~ah~~~S~LvC~iSg~vmde~N-~P~~lPNG~VYs~~aL 96 (97)
....|++|...|.+.. .+|.......+.++ +.+.+|.||+|-..-|
T Consensus 47 ~~d~CaICl~~~~~~c------------~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI 93 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLC------------IECQANQASATSEECTVAWGVCNHAFHFHCI 93 (117)
T ss_dssp CC---------------------------------------------------------
T ss_pred CCCcCeECChhhcCcC------------hhhhcccccccccccccccCCcCceEcHHHH
Confidence 4478999988876532 23333222222233 3344678888865543
No 95
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=20.53 E-value=42 Score=21.51 Aligned_cols=44 Identities=11% Similarity=0.132 Sum_probs=22.9
Q ss_pred CCCCCCCCChhHHHhhhhCCCceecccEEEeccc-cccccCCCCceecCCCceeccc
Q psy16822 39 RNKSCPVCMEPFNTLAKSLPYARCNQSRLVCSIS-GLQFNEYNQPMVLPNGYVYGEQ 94 (97)
Q Consensus 39 ~~~~CPvC~~~~~~La~~LP~ah~~~S~LvC~iS-g~vmde~N~P~~lPNG~VYs~~ 94 (97)
....|++|...|.+- -.+|..- +....++.+.+.+|.||+|-..
T Consensus 36 ~~d~CaIC~~~~~~~------------c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~ 80 (106)
T 3dpl_R 36 VVDNCAICRNHIMDL------------CIECQANQASATSEECTVAWGVCNHAFHFH 80 (106)
T ss_dssp CSCCCSSSCSCTTSC------------CTTHHHHTTCC---CCCEEEETTSCEEEHH
T ss_pred CCCCCccCChhHhCc------------CchhhccccccCCccceEeecccCcEECHH
Confidence 346788887766432 1122110 1112345566778999998543
No 96
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=20.09 E-value=16 Score=20.63 Aligned_cols=16 Identities=38% Similarity=0.910 Sum_probs=10.2
Q ss_pred cccCCCCc-------eecCCCce
Q psy16822 75 QFNEYNQP-------MVLPNGYV 90 (97)
Q Consensus 75 vmde~N~P-------~~lPNG~V 90 (97)
-|++-|.| .|||.||.
T Consensus 15 ei~~RNrpltDEeLD~mLP~GYk 37 (39)
T 3lqv_P 15 EIDERNRPLSDEELDAMFPEGYK 37 (39)
T ss_dssp HHHHTTCCCCHHHHHHTCCSSEE
T ss_pred cchhhcCCCCHHHHHHhCCCCcc
Confidence 45555666 47888874
No 97
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.01 E-value=39 Score=14.33 Aligned_cols=11 Identities=45% Similarity=1.141 Sum_probs=7.7
Q ss_pred CCCCCCChhHH
Q psy16822 41 KSCPVCMEPFN 51 (97)
Q Consensus 41 ~~CPvC~~~~~ 51 (97)
-.|+.|...|.
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 2m0e_A 3 HKCPHCDKKFN 13 (29)
T ss_dssp CCCSSCCCCCC
T ss_pred CcCCCCCcccC
Confidence 46888877653
Done!