RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16822
(97 letters)
>gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation
motif. This zinc-finger is the dimerisation motif for
LisH proteins, and is also a typical RING-type of plant
ubiquitin ligases.
Length = 55
Score = 48.5 bits (116), Expect = 3e-09
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 57 LPYARCNQSRLVCSISG-LQFNEYNQPMVLPNGYVYGEQ 94
LPYA S VC IS + +E N P++LP G+VY +
Sbjct: 1 LPYAHHFHSIFVCPISKEVMTDEENPPVMLPCGHVYSRK 39
>gnl|CDD|116012 pfam07389, DUF1500, Protein of unknown function (DUF1500). This
family consists of several Orthopoxvirus specific
proteins of around 100 residues in length. The function
of this family is unknown.
Length = 100
Score = 26.9 bits (59), Expect = 0.91
Identities = 9/45 (20%), Positives = 26/45 (57%)
Query: 49 PFNTLAKSLPYARCNQSRLVCSISGLQFNEYNQPMVLPNGYVYGE 93
PF+ + + +P C + ++ +++G+ NE++ + + G ++ E
Sbjct: 50 PFDDIVRIMPNESCVKQWVIDTLNGIIMNEHDVAVCVGTGILFME 94
>gnl|CDD|223146 COG0068, HypF, Hydrogenase maturation factor [Posttranslational
modification, protein turnover, chaperones].
Length = 750
Score = 27.7 bits (62), Expect = 0.94
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 9/44 (20%)
Query: 31 CSSEVMETRNKSCPVCMEPFN---------TLAKSLPYARCNQS 65
C + E + + + PF T+ ++LPY R N S
Sbjct: 104 CEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTS 147
>gnl|CDD|232844 TIGR00143, hypF, [NiFe] hydrogenase maturation protein HypF. A
previously described regulatory effect of HypF
mutatation is attributable to loss of activity of a
regulatory hydrogenase. A zinc finger-like region
CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported
the regulatory hypothesis. However, more recent work
(PUBMED:11375153) shows the direct effect is on the
activity of expressed hydrogenases with nickel/iron
centers, rather than on expression [Protein fate,
Protein modification and repair].
Length = 711
Score = 27.0 bits (60), Expect = 1.4
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 8/44 (18%)
Query: 29 PQCSSEVMETRNK-------SCPVCMEPFNTLAKSLPYARCNQS 65
C E+++ ++ SC C F T+ ++LPY R N S
Sbjct: 72 SDCLEEMLDKNDRRYLYPFISCTHCGPRF-TIIEALPYDRENTS 114
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 26.4 bits (58), Expect = 2.0
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 43 CPVCMEPFNTLAKSLPYARCNQSRLVCSISGLQF 76
CP+C+ PF++ + R + VC + G +F
Sbjct: 76 CPLCLMPFSSSVSLKQHIRYTEHSKVCPVCGKEF 109
>gnl|CDD|237575 PRK13977, PRK13977, myosin-cross-reactive antigen; Provisional.
Length = 576
Score = 25.9 bits (58), Expect = 3.4
Identities = 10/17 (58%), Positives = 13/17 (76%), Gaps = 2/17 (11%)
Query: 72 SGLQFNEYNQ--PMVLP 86
SGL+F +YNQ +VLP
Sbjct: 215 SGLKFTKYNQYESLVLP 231
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This is
a family of uncharacterized proteins.
Length = 449
Score = 25.7 bits (56), Expect = 4.7
Identities = 16/40 (40%), Positives = 18/40 (45%)
Query: 19 SPPGLSALKTPQCSSEVMETRNKSCPVCMEPFNTLAKSLP 58
SPP L A +P S V E P+ P T KSLP
Sbjct: 306 SPPPLHASDSPVASPHVGELGVNFSPLAFRPGLTRTKSLP 345
>gnl|CDD|177491 PHA02825, PHA02825, LAP/PHD finger-like protein; Provisional.
Length = 162
Score = 25.1 bits (55), Expect = 5.9
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 30 QCSSEVMET-RNKSCPVCMEPFNTLAKSLPYARCNQSRLVCSISGL 74
+C E + T +NKSC +C P+N + S C S +
Sbjct: 37 ECLEEWINTSKNKSCKICNGPYNIKKNYKKCTKWRCSFRDCHDSAI 82
>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional.
Length = 238
Score = 25.1 bits (55), Expect = 6.2
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 40 NKSCPVCMEPFNTLAKS 56
+CPVC PF ++ KS
Sbjct: 216 KNTCPVCRTPFISVIKS 232
>gnl|CDD|218897 pfam06100, Strep_67kDa_ant, Streptococcal 67 kDa
myosin-cross-reactive antigen like family. Members of
this family are thought to have structural features in
common with the beta chain of the class II antigens, as
well as myosin, and may play an important role in the
pathogenesis.
Length = 500
Score = 25.1 bits (55), Expect = 7.0
Identities = 9/17 (52%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
Query: 72 SGLQFNEYNQ--PMVLP 86
S L+F +YNQ +VLP
Sbjct: 196 SALKFTKYNQYESLVLP 212
>gnl|CDD|217086 pfam02527, GidB, rRNA small subunit methyltransferase G. This is a
family of bacterial glucose inhibited division proteins
these are probably involved in the regulation of cell
devision. GidB has been shown to be a methyltransferase
G specific to the rRNA small subunit. Previously
identified as a glucose-inhibited division protein B
that appears to be present and in a single copy in all
complete eubacterial genomes so far sequenced. GidB
specifically methylates the N7 position of a guanosine
in 16S rRNA.
Length = 184
Score = 24.9 bits (55), Expect = 7.1
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 65 SRLVCSISGLQFNEYNQPMVLPNGYVY 91
SR V S++ + E+ P++ P GY
Sbjct: 121 SRAVASLN--ELTEWALPLLKPGGYFL 145
>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain,
a specialized type of Zn-finger of 40 to 60 residues
that binds two atoms of zinc; defined by the
'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)-
H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved
in mediating protein-protein interactions; identified
in a proteins with a wide range of functions such as
viral replication, signal transduction, and
development; has two variants, the C3HC4-type and a
C3H2C3-type (RING-H2 finger), which have different
cysteine/histidine pattern; a subset of RINGs are
associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H).
Length = 45
Score = 23.6 bits (51), Expect = 7.3
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 31 CSSEVMETRNKSCPVCMEPF 50
C + +++ +CP+C P
Sbjct: 26 CIDKWLKSGKNTCPLCRTPI 45
>gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain. Modified RING
finger domain, without the full complement of
Zn2+-binding ligands. Probable involvement in
E2-dependent ubiquitination.
Length = 63
Score = 23.7 bits (52), Expect = 7.7
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Query: 67 LVCSISGLQFNEYNQPMVLPNGYVY 91
+C IS + P++LP+G Y
Sbjct: 2 FLCPISLEVMKD---PVILPSGQTY 23
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.131 0.393
Gapped
Lambda K H
0.267 0.0768 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,459,269
Number of extensions: 316639
Number of successful extensions: 259
Number of sequences better than 10.0: 1
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 17
Length of query: 97
Length of database: 10,937,602
Length adjustment: 64
Effective length of query: 33
Effective length of database: 8,098,946
Effective search space: 267265218
Effective search space used: 267265218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.1 bits)