RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16822
         (97 letters)



>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein
          1 (RAG1), dimerization domain {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 86

 Score = 26.0 bits (57), Expect = 0.36
 Identities = 5/22 (22%), Positives = 7/22 (31%)

Query: 30 QCSSEVMETRNKSCPVCMEPFN 51
           C    ++     CP C  P  
Sbjct: 48 ICILRCLKVMGSYCPSCRYPCF 69


>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia
          coli [TaxId: 562]}
          Length = 268

 Score = 25.7 bits (55), Expect = 0.96
 Identities = 6/22 (27%), Positives = 11/22 (50%)

Query: 43 CPVCMEPFNTLAKSLPYARCNQ 64
          CP+C +P +    S    + +Q
Sbjct: 4  CPLCHQPLSREKNSYICPQRHQ 25


>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
          herpesvirus 1 [TaxId: 10326]}
          Length = 68

 Score = 24.1 bits (52), Expect = 1.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 36 METRNKSCPVCMEPFNTLAKSLP 58
          M T  + CP+C+E  +  + +LP
Sbjct: 1  MATVAERCPICLEDPSNYSMALP 23



 Score = 22.2 bits (47), Expect = 8.2
 Identities = 5/19 (26%), Positives = 12/19 (63%)

Query: 39 RNKSCPVCMEPFNTLAKSL 57
          +N +CP+C  P  ++  ++
Sbjct: 39 QNPTCPLCKVPVESVVHTI 57


>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 79

 Score = 23.4 bits (50), Expect = 3.0
 Identities = 5/24 (20%), Positives = 8/24 (33%)

Query: 29 PQCSSEVMETRNKSCPVCMEPFNT 52
            C +   E+  + CP C      
Sbjct: 47 TSCLTSWQESEGQGCPFCRCEIKG 70


>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 64

 Score = 22.7 bits (48), Expect = 6.0
 Identities = 5/30 (16%), Positives = 13/30 (43%), Gaps = 2/30 (6%)

Query: 41 KSCPVCMEPFNTLAKSLPYARCNQSRLVCS 70
          ++C  C + F+   +     +C    + C+
Sbjct: 9  QNCMACGKGFSVTVRRHHCRQCG--NIFCA 36


>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
          ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 88

 Score = 22.4 bits (47), Expect = 7.9
 Identities = 4/23 (17%), Positives = 9/23 (39%), Gaps = 1/23 (4%)

Query: 29 PQCSSEVMETRNKSCPVCMEPFN 51
            C S  ++   + CP+    + 
Sbjct: 63 FHCISRWLK-TRQVCPLDNREWE 84


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.131    0.393 

Gapped
Lambda     K      H
   0.267   0.0510    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 326,809
Number of extensions: 11999
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 21
Length of query: 97
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 38
Effective length of database: 1,597,526
Effective search space: 60705988
Effective search space used: 60705988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.4 bits)