BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16823
(263 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1K8K|E Chain E, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|E Chain E, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|E Chain E, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|E Chain E, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|E Chain E, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|E Chain E, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|E Chain E, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|E Chain E, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|E Chain E, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|E Chain E, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
pdb|3DXK|E Chain E, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|E Chain E, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|E Chain E, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|E Chain E, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|E Chain E, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|E Chain E, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 178
Score = 174 bits (441), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 79/123 (64%), Positives = 105/123 (85%), Gaps = 2/123 (1%)
Query: 1 MPAYHSTLTDFN-QCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYE 59
MPAYHS+L D + + +GN+A+LPI++Q++GPAP+ T + DI++EA+YYFKANVFF+ YE
Sbjct: 1 MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPR-ETKDTDIVDEAIYYFKANVFFKNYE 59
Query: 60 IKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAK 119
IK+EADR LIYITLYI+ECLKKLQKC +K+QG+ EMY+L + F +PGE GFPLN++YAK
Sbjct: 60 IKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAK 119
Query: 120 PQN 122
P N
Sbjct: 120 PAN 122
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 67/118 (56%), Positives = 91/118 (77%), Gaps = 5/118 (4%)
Query: 150 KNESSR--IYV---IRNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKP 204
KNE+ R IY+ I CLKKLQKC +K+QG+ EMY+L + F +PGE GFPLN++YAKP
Sbjct: 61 KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 120
Query: 205 QSQNEADLMKNYLTQVRQETGLRVCERVFNTPDGKPSKWWLCFSKKRFMDKSLTALGQ 262
++ E ++M+ YL Q+RQETGLR+CE+VF+ + KPSKWW CF K++FM+KSL+ GQ
Sbjct: 121 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLSGPGQ 178
>pdb|3DWL|E Chain E, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|J Chain J, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 174
Score = 122 bits (305), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 83/123 (67%), Gaps = 5/123 (4%)
Query: 1 MPAYHST---LTDFNQCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRT 57
MPAYHS+ LTD GNIAMLP+KT++RGPA + DII+E + F+AN FFR
Sbjct: 1 MPAYHSSFLSLTDV-PTTGNIAMLPLKTKFRGPAYPADESQMDIIDECIGLFRANCFFRN 59
Query: 58 YEIKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVY 117
+EIK ADR LIY TL+I+ECL ++ + + ++ SLAL F +PG AGFPLN++Y
Sbjct: 60 FEIKGPADRTLIYGTLFISECLGRVNGLNYR-DAERQLNSLALENFSIPGSAGFPLNALY 118
Query: 118 AKP 120
A P
Sbjct: 119 APP 121
Score = 101 bits (251), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Query: 159 IRNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQSQNEADLMKNYLT 218
I CL ++ + + ++ SLAL F +PG AGFPLN++YA P S +A++M+ YLT
Sbjct: 77 ISECLGRVNGLNYR-DAERQLNSLALENFSIPGSAGFPLNALYAPPLSPQDAEIMRTYLT 135
Query: 219 QVRQETGLRVCERVFNTPDGKPSKWWLCFSKKRFMDKSL 257
Q RQE R+ V+ T PSKWW CFSK+RFM+K+L
Sbjct: 136 QFRQELAYRLLSHVYATEKDHPSKWWTCFSKRRFMNKAL 174
>pdb|3URF|A Chain A, Human RanklOPG COMPLEX
Length = 162
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 34/72 (47%)
Query: 34 FTTGEQDIIEEALYYFKANVFFRTYEIKSEADRLLIYITLYITECLKKLQKCPTKAQGQN 93
F+ G+ + ++ YY AN+ FR +E + + + +Y+T+ K+ T +G +
Sbjct: 40 FSNGKLIVNQDGFYYLYANICFRHHETSGDLATEYLQLMVYVTKTSIKIPSSHTLMKGGS 99
Query: 94 EMYSLALAKFDL 105
Y ++F
Sbjct: 100 TKYWSGNSEFHF 111
>pdb|2X92|A Chain A, Crystal Structure Of Ance-Ramiprilat Complex
pdb|2X93|A Chain A, Crystal Structure Of Ance-Trandolaprilat Complex
pdb|2X94|A Chain A, Crystal Structure Of Ance-Perindoprilat Complex
pdb|2X95|A Chain A, Crystal Structure Of Ance-Lisinopril-Tryptophan Analogue,
Lisw-S Complex
Length = 599
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 17 NIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYEIKSEADRLLIYITLYIT 76
N A ++ +Y G P E+D A Y+ A+V + Y + +I Y +
Sbjct: 450 NCAFWKLRDEYSGIEPPVVRSEKDFDAPAKYHISADVEYLRYLVS-----FIIQFQFYKS 504
Query: 77 ECLKKLQKCPTKAQ 90
C+K Q P +
Sbjct: 505 ACIKAGQYDPDNVE 518
>pdb|2X8Y|A Chain A, Crystal Structure Of Ance
pdb|2X8Z|A Chain A, Crystal Structure Of Ance-Captopril Complex
pdb|2X90|A Chain A, Crystal Structure Of Ance-Enalaprilat Complex
pdb|2X91|A Chain A, Crystal Structure Of Ance-Lisinopril Complex
pdb|2X96|A Chain A, Crystal Structure Of Ance-Rxpa380 Complex
pdb|2X97|A Chain A, Crystal Structure Of Ance-Rxp407 Complex
pdb|2XHM|A Chain A, Crystal Structure Of Ance-K26 Complex
pdb|3ZQZ|A Chain A, Crystal Structure Of Ance In Complex With A Selenium
Analogue Of Captopril
pdb|4AA1|A Chain A, Crystal Structure Of Ance In Complex With Angiotensin-Ii
pdb|4AA2|A Chain A, Crystal Structure Of Ance In Complex With Bradykinin
Potentiating Peptide B
pdb|4ASQ|A Chain A, Crystal Structure Of Ance In Complex With Bradykinin
pdb|4ASR|A Chain A, Crystal Structure Of Ance In Complex With Thr6-Bradykinin
Length = 598
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 17 NIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYEIKSEADRLLIYITLYIT 76
N A ++ +Y G P E+D A Y+ A+V + Y + +I Y +
Sbjct: 450 NCAFWKLRDEYSGIEPPVVRSEKDFDAPAKYHISADVEYLRYLVS-----FIIQFQFYKS 504
Query: 77 ECLKKLQKCPTKAQ 90
C+K Q P +
Sbjct: 505 ACIKAGQYDPDNVE 518
>pdb|1J36|A Chain A, Crystal Structure Of Drosophila Ance
pdb|1J36|B Chain B, Crystal Structure Of Drosophila Ance
pdb|1J37|A Chain A, Crystal Structure Of Drosophila Ance
pdb|1J37|B Chain B, Crystal Structure Of Drosophila Ance
pdb|1J38|A Chain A, Crystal Structure Of Drosophila Ance
pdb|1J38|B Chain B, Crystal Structure Of Drosophila Ance
Length = 607
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 17 NIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYEIKSEADRLLIYITLYIT 76
N A ++ +Y G P E+D A Y+ A+V + Y + +I Y +
Sbjct: 453 NCAFWKLRDEYSGIEPPVVRSEKDFDAPAKYHISADVEYLRYLVS-----FIIQFQFYKS 507
Query: 77 ECLKKLQKCPTKAQ 90
C+K Q P +
Sbjct: 508 ACIKAGQYDPDNVE 521
>pdb|1M5H|A Chain A, Formylmethanofuran:tetrahydromethanopterin
Formyltransferase From Archaeoglobus Fulgidus
pdb|1M5H|B Chain B, Formylmethanofuran:tetrahydromethanopterin
Formyltransferase From Archaeoglobus Fulgidus
pdb|1M5H|C Chain C, Formylmethanofuran:tetrahydromethanopterin
Formyltransferase From Archaeoglobus Fulgidus
pdb|1M5H|D Chain D, Formylmethanofuran:tetrahydromethanopterin
Formyltransferase From Archaeoglobus Fulgidus
pdb|1M5H|E Chain E, Formylmethanofuran:tetrahydromethanopterin
Formyltransferase From Archaeoglobus Fulgidus
pdb|1M5H|F Chain F, Formylmethanofuran:tetrahydromethanopterin
Formyltransferase From Archaeoglobus Fulgidus
pdb|1M5H|G Chain G, Formylmethanofuran:tetrahydromethanopterin
Formyltransferase From Archaeoglobus Fulgidus
pdb|1M5H|H Chain H, Formylmethanofuran:tetrahydromethanopterin
Formyltransferase From Archaeoglobus Fulgidus
Length = 297
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 206 SQNEADLMKNYLTQVRQETGLRVCERVFNTPDGKPSKWW-LCFSKKRFMDKSLTA-LGQ 262
+ NEA + E G+ + + TPDG+P + +C K+ +++ L A LGQ
Sbjct: 36 AANEATGFGTSVIMCPAEAGIEIKAKPSETPDGRPGYYIQICHMSKKGLEEQLLARLGQ 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,630,123
Number of Sequences: 62578
Number of extensions: 302086
Number of successful extensions: 517
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 509
Number of HSP's gapped (non-prelim): 9
length of query: 263
length of database: 14,973,337
effective HSP length: 97
effective length of query: 166
effective length of database: 8,903,271
effective search space: 1477942986
effective search space used: 1477942986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)