BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16823
(263 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O15145|ARPC3_HUMAN Actin-related protein 2/3 complex subunit 3 OS=Homo sapiens
GN=ARPC3 PE=1 SV=3
Length = 178
Score = 174 bits (441), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 79/123 (64%), Positives = 105/123 (85%), Gaps = 2/123 (1%)
Query: 1 MPAYHSTLTDFN-QCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYE 59
MPAYHS+L D + + +GN+A+LPI++Q++GPAP+ T + DI++EA+YYFKANVFF+ YE
Sbjct: 1 MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPR-ETKDTDIVDEAIYYFKANVFFKNYE 59
Query: 60 IKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAK 119
IK+EADR LIYITLYI+ECLKKLQKC +K+QG+ EMY+L + F +PGE GFPLN++YAK
Sbjct: 60 IKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAK 119
Query: 120 PQN 122
P N
Sbjct: 120 PAN 122
Score = 146 bits (369), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/118 (56%), Positives = 91/118 (77%), Gaps = 5/118 (4%)
Query: 150 KNESSR--IYV---IRNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKP 204
KNE+ R IY+ I CLKKLQKC +K+QG+ EMY+L + F +PGE GFPLN++YAKP
Sbjct: 61 KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 120
Query: 205 QSQNEADLMKNYLTQVRQETGLRVCERVFNTPDGKPSKWWLCFSKKRFMDKSLTALGQ 262
++ E ++M+ YL Q+RQETGLR+CE+VF+ + KPSKWW CF K++FM+KSL+ GQ
Sbjct: 121 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLSGPGQ 178
>sp|Q3T035|ARPC3_BOVIN Actin-related protein 2/3 complex subunit 3 OS=Bos taurus GN=ARPC3
PE=1 SV=3
Length = 178
Score = 174 bits (441), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 79/123 (64%), Positives = 105/123 (85%), Gaps = 2/123 (1%)
Query: 1 MPAYHSTLTDFN-QCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYE 59
MPAYHS+L D + + +GN+A+LPI++Q++GPAP+ T + DI++EA+YYFKANVFF+ YE
Sbjct: 1 MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPR-ETKDTDIVDEAIYYFKANVFFKNYE 59
Query: 60 IKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAK 119
IK+EADR LIYITLYI+ECLKKLQKC +K+QG+ EMY+L + F +PGE GFPLN++YAK
Sbjct: 60 IKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAK 119
Query: 120 PQN 122
P N
Sbjct: 120 PAN 122
Score = 146 bits (369), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/118 (56%), Positives = 91/118 (77%), Gaps = 5/118 (4%)
Query: 150 KNESSR--IYV---IRNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKP 204
KNE+ R IY+ I CLKKLQKC +K+QG+ EMY+L + F +PGE GFPLN++YAKP
Sbjct: 61 KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 120
Query: 205 QSQNEADLMKNYLTQVRQETGLRVCERVFNTPDGKPSKWWLCFSKKRFMDKSLTALGQ 262
++ E ++M+ YL Q+RQETGLR+CE+VF+ + KPSKWW CF K++FM+KSL+ GQ
Sbjct: 121 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLSGPGQ 178
>sp|Q9JM76|ARPC3_MOUSE Actin-related protein 2/3 complex subunit 3 OS=Mus musculus
GN=Arpc3 PE=1 SV=3
Length = 178
Score = 172 bits (435), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 77/121 (63%), Positives = 104/121 (85%), Gaps = 2/121 (1%)
Query: 1 MPAYHSTLTDFN-QCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYE 59
MPAYHS+L D + + +GN+A+LP+++Q++GPAP+ T + DI++EA+YYFKANVFF+ YE
Sbjct: 1 MPAYHSSLMDPDTKLIGNMALLPLRSQFKGPAPR-ETKDTDIVDEAIYYFKANVFFKNYE 59
Query: 60 IKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAK 119
IK+EADR LIYITLYI+ECLKKLQKC +K+QG+ EMY+L + F +PGE GFPLN++YAK
Sbjct: 60 IKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAK 119
Query: 120 P 120
P
Sbjct: 120 P 120
Score = 148 bits (374), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 78/162 (48%), Positives = 107/162 (66%), Gaps = 11/162 (6%)
Query: 109 AGFPLNSVYAKPQNLLFKAKKLKEANGYKF---VWVRDCKIMIRKNESSR--IYV---IR 160
A PL S + P K + + Y F V+ ++ +I KNE+ R IY+ I
Sbjct: 20 ALLPLRSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEI---KNEADRTLIYITLYIS 76
Query: 161 NCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQSQNEADLMKNYLTQV 220
CLKKLQKC +K+QG+ EMY+L + F +PGE GFPLN++YAKP S+ E ++M+ YL Q+
Sbjct: 77 ECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPASKQEDEMMRAYLQQL 136
Query: 221 RQETGLRVCERVFNTPDGKPSKWWLCFSKKRFMDKSLTALGQ 262
RQETGLR+CE+VF+ KPSKWW CF K++FM+KSL+ GQ
Sbjct: 137 RQETGLRLCEKVFDPQSDKPSKWWTCFVKRQFMNKSLSGPGQ 178
>sp|Q9XWV3|ARPC3_CAEEL Probable actin-related protein 2/3 complex subunit 3
OS=Caenorhabditis elegans GN=arx-5 PE=3 SV=1
Length = 183
Score = 124 bits (311), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/127 (54%), Positives = 89/127 (70%), Gaps = 7/127 (5%)
Query: 1 MPAYHSTLTDFNQCV--GNIAM--LPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFR 56
MPAYHS + + GN M LPI+T ++GPAPQ T + DII+EAL YFK N+FFR
Sbjct: 1 MPAYHSKFDTELKVLPLGNTNMGKLPIRTNFKGPAPQ--TNQDDIIDEALTYFKPNIFFR 58
Query: 57 TYEIKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFD-LPGEAGFPLNS 115
+EIK ADR +IY+ YITECL+KLQK P K GQ ++++LAL+ +PGE GFPLNS
Sbjct: 59 EFEIKGPADRTMIYLIFYITECLRKLQKSPNKIAGQKDLHALALSHLLPIPGENGFPLNS 118
Query: 116 VYAKPQN 122
+Y PQ+
Sbjct: 119 MYKAPQS 125
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 75/107 (70%), Gaps = 1/107 (0%)
Query: 156 IYVIRNCLKKLQKCPTKAQGQNEMYSLALAKFD-LPGEAGFPLNSVYAKPQSQNEADLMK 214
I+ I CL+KLQK P K GQ ++++LAL+ +PGE GFPLNS+Y PQS+ + D M+
Sbjct: 74 IFYITECLRKLQKSPNKIAGQKDLHALALSHLLPIPGENGFPLNSMYKAPQSKPDEDEMR 133
Query: 215 NYLTQVRQETGLRVCERVFNTPDGKPSKWWLCFSKKRFMDKSLTALG 261
YL Q+RQE G R+C+ F P +PSKWWLCF+++RFMDK L G
Sbjct: 134 AYLQQIRQEIGARLCDLAFPDPQDRPSKWWLCFARRRFMDKGLVGQG 180
>sp|Q9Y7J4|ARPC3_SCHPO Actin-related protein 2/3 complex subunit 3 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=arc3 PE=1 SV=1
Length = 174
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 83/123 (67%), Gaps = 5/123 (4%)
Query: 1 MPAYHST---LTDFNQCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRT 57
MPAYHS+ LTD GNIAMLP+KT++RGPA + DII+E + F+AN FFR
Sbjct: 1 MPAYHSSFLSLTDV-PTTGNIAMLPLKTKFRGPAYPADESQMDIIDECIGLFRANCFFRN 59
Query: 58 YEIKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVY 117
+EIK ADR LIY TL+I+ECL ++ + + ++ SLAL F +PG AGFPLN++Y
Sbjct: 60 FEIKGPADRTLIYGTLFISECLGRVNGLNYR-DAERQLNSLALENFSIPGSAGFPLNALY 118
Query: 118 AKP 120
A P
Sbjct: 119 APP 121
Score = 101 bits (251), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Query: 159 IRNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQSQNEADLMKNYLT 218
I CL ++ + + ++ SLAL F +PG AGFPLN++YA P S +A++M+ YLT
Sbjct: 77 ISECLGRVNGLNYR-DAERQLNSLALENFSIPGSAGFPLNALYAPPLSPQDAEIMRTYLT 135
Query: 219 QVRQETGLRVCERVFNTPDGKPSKWWLCFSKKRFMDKSL 257
Q RQE R+ V+ T PSKWW CFSK+RFM+K+L
Sbjct: 136 QFRQELAYRLLSHVYATEKDHPSKWWTCFSKRRFMNKAL 174
>sp|Q05933|ARPC3_YEAST Actin-related protein 2/3 complex subunit 3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ARC18 PE=1
SV=1
Length = 178
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 80/123 (65%), Gaps = 4/123 (3%)
Query: 1 MPAYHSTLT---DFNQCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRT 57
MPAYHST + ++ VGN A+LP+ T++RGPA + + DII+E L F+AN FF+
Sbjct: 1 MPAYHSTFPVDPNTDRMVGNFALLPLNTKFRGPAYP-SNSDYDIIDECLDLFRANSFFKN 59
Query: 58 YEIKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVY 117
+EIKS ADR+LIY L+I +CL L+ + + + ++AL F LPG GFPLN+VY
Sbjct: 60 FEIKSPADRVLIYGILFINDCLAHLKITTSFNEAVKVLTNVALDNFTLPGTPGFPLNNVY 119
Query: 118 AKP 120
P
Sbjct: 120 QVP 122
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 67/105 (63%), Gaps = 3/105 (2%)
Query: 156 IYVIRNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKP-QSQNEADLMK 214
I I +CL L+ + + + ++AL F LPG GFPLN+VY P Q N DL+K
Sbjct: 74 ILFINDCLAHLKITTSFNEAVKVLTNVALDNFTLPGTPGFPLNNVYQVPVQDHNSMDLLK 133
Query: 215 NYLTQVRQETGLRVCERVFNTPDGK--PSKWWLCFSKKRFMDKSL 257
Y+ Q RQE +R+ ERV+++ D K PSK+WL F+++RFM+KSL
Sbjct: 134 TYIQQFRQELAMRLLERVYSSTDSKEYPSKFWLAFTRRRFMNKSL 178
>sp|O96624|ARPC3_DICDI Actin-related protein 2/3 complex subunit 3 OS=Dictyostelium
discoideum GN=arcC PE=1 SV=1
Length = 174
Score = 110 bits (276), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 77/122 (63%), Gaps = 4/122 (3%)
Query: 3 AYHSTLTDFN---QCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYE 59
YHS D + + VGN+ +LP+KT ++GPAP+ DII+EAL FKAN+ FR +E
Sbjct: 2 VYHSQFNDESAGFRLVGNVPILPLKTTHKGPAPKGDANSVDIIDEALDLFKANILFRNFE 61
Query: 60 IKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAK 119
++ DR+LIY+TLYIT+CL K+ KA + ++ +A +F +PGE+ FPL +
Sbjct: 62 VQGNGDRVLIYLTLYITKCLLKIAPM-NKADAEKALFLIAQEQFSIPGESAFPLGGLVTV 120
Query: 120 PQ 121
P
Sbjct: 121 PN 122
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Query: 159 IRNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQSQNEADLMKNYLT 218
I CL K+ KA + ++ +A +F +PGE+ FPL + P +++ AD ++ Y T
Sbjct: 77 ITKCLLKIAPM-NKADAEKALFLIAQEQFSIPGESAFPLGGLVTVPNTRDAADTLRQYFT 135
Query: 219 QVRQETGLRVCERVFNTPDGKPSKWWLCFSKKRFMDKSL 257
Q+R E G+R+C+RV+ K +KWW+CFSK++F++K+L
Sbjct: 136 QLRLELGVRLCQRVYAVDPSKANKWWICFSKRKFLNKAL 174
>sp|O15604|ARPC3_ENTHI Probable actin-related protein 2/3 complex subunit 3 (Fragment)
OS=Entamoeba histolytica PE=2 SV=1
Length = 128
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Query: 3 AYHSTLT-DFNQCVGNIAMLPIKTQYR-GPAPQFTTGEQDIIEEALYYFKANVFFRTYEI 60
AYHS L D Q GN ++ KT+ + P + DI++EA+ Y+KANVF++ ++
Sbjct: 8 AYHSELDKDIVQKAGNFPLMQFKTKVKVNPKFLLKGDDMDIVDEAITYYKANVFYKNLDM 67
Query: 61 K-SEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAK 119
EAD+LL Y+ Y+ L TK +SLA+ F LPG+ F L +
Sbjct: 68 SICEADKLLAYLMFYLQSLLLTFTG-RTKVDCDKMAFSLAIENFGLPGDGKFCLGGIADP 126
Query: 120 P 120
P
Sbjct: 127 P 127
>sp|O14788|TNF11_HUMAN Tumor necrosis factor ligand superfamily member 11 OS=Homo sapiens
GN=TNFSF11 PE=1 SV=1
Length = 317
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 34/70 (48%)
Query: 34 FTTGEQDIIEEALYYFKANVFFRTYEIKSEADRLLIYITLYITECLKKLQKCPTKAQGQN 93
F+ G+ + ++ YY AN+ FR +E + + + +Y+T+ K+ T +G +
Sbjct: 201 FSNGKLIVNQDGFYYLYANICFRHHETSGDLATEYLQLMVYVTKTSIKIPSSHTLMKGGS 260
Query: 94 EMYSLALAKF 103
Y ++F
Sbjct: 261 TKYWSGNSEF 270
>sp|Q73NP8|TRUB_TREDE tRNA pseudouridine synthase B OS=Treponema denticola (strain ATCC
35405 / CIP 103919 / DSM 14222) GN=truB PE=3 SV=1
Length = 357
Score = 31.6 bits (70), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 74 YITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPL-NSVYAKPQNLLFKAKK-LK 131
YI ++ L + + + A+ F L AGF L N+ A P+NL K KK L
Sbjct: 192 YIRSLVRDLARKASSCAYVRALRRTAVGNFKLEDAAGFDLLNNFSAAPENLFLKEKKILD 251
Query: 132 EANGYKF 138
A G KF
Sbjct: 252 AAAGKKF 258
>sp|A6QP06|SYTL2_BOVIN Synaptotagmin-like protein 2 OS=Bos taurus GN=SYTL2 PE=2 SV=1
Length = 943
Score = 31.6 bits (70), Expect = 6.8, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 102 KFDLPG-EAGFPLNSVYAKPQNLLFKAKKLKEANGYKF 138
K LPG E+GFP+ + KP+ +++K++ LK+ + F
Sbjct: 219 KQTLPGPESGFPIKAPVPKPRKMIYKSQDLKQDDNQPF 256
>sp|P08161|VE94_NPVAC Early 94 kDa protein OS=Autographa californica nuclear polyhedrosis
virus PE=4 SV=2
Length = 803
Score = 31.2 bits (69), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 18/137 (13%)
Query: 32 PQFTTGEQDIIEEALYYFKANVFFRTYEIKSEA------DRLLIYITLYITECLKKLQKC 85
P F E ++L +V F EI E +R+L LYI EC+K L K
Sbjct: 650 PAFVLEEGKTFYDSLLKQLQSVHFNGQEITFEKCSRLDFNRILSLHKLYI-ECVKSLNKY 708
Query: 86 PTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQNLLFKAKKLKEANGYKFVWVRDCK 145
PT + QN +Y+ KF N + P+N+L + K V + +
Sbjct: 709 PTLEEYQNYVYNQKHVKF----------NRIAIFPENILQNLAAVHNEYANKIVNLPVEE 758
Query: 146 IMIRKNES-SRIYVIRN 161
++R N + +RI I+N
Sbjct: 759 FIVRANNTVNRITRIQN 775
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,410,653
Number of Sequences: 539616
Number of extensions: 3754121
Number of successful extensions: 6337
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6305
Number of HSP's gapped (non-prelim): 22
length of query: 263
length of database: 191,569,459
effective HSP length: 115
effective length of query: 148
effective length of database: 129,513,619
effective search space: 19168015612
effective search space used: 19168015612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)