Query psy16823
Match_columns 263
No_of_seqs 151 out of 224
Neff 2.7
Searched_HMMs 46136
Date Fri Aug 16 22:58:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16823.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16823hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04062 P21-Arc: ARP2/3 compl 100.0 7.8E-88 1.7E-92 579.3 8.4 173 1-257 1-175 (175)
2 KOG3155|consensus 100.0 4.5E-83 9.8E-88 547.0 11.7 172 1-257 1-173 (173)
3 PF04062 P21-Arc: ARP2/3 compl 99.8 2.4E-22 5.3E-27 173.9 2.4 77 139-226 55-137 (175)
4 KOG3155|consensus 99.8 2.6E-20 5.6E-25 160.8 3.5 84 139-233 53-145 (173)
5 PF09254 Endonuc-FokI_C: Restr 85.4 0.64 1.4E-05 41.9 2.5 37 202-249 84-120 (189)
6 cd00126 PAH Pancreatic Hormone 80.1 3.6 7.8E-05 28.4 4.0 28 199-226 3-30 (36)
7 smart00309 PAH Pancreatic horm 79.6 3.9 8.3E-05 28.3 4.0 29 198-226 2-30 (36)
8 PF00159 Hormone_3: Pancreatic 78.1 4.4 9.5E-05 27.9 3.9 29 198-226 2-30 (36)
9 KOG3420|consensus 38.5 11 0.00024 34.0 0.1 60 4-70 40-104 (185)
10 PF15297 CKAP2_C: Cytoskeleton 35.6 59 0.0013 32.1 4.6 63 74-184 105-167 (353)
11 COG3657 Uncharacterized protei 29.9 67 0.0015 26.8 3.4 59 74-162 11-69 (100)
12 PF08606 Prp19: Prp19/Pso4-lik 24.2 76 0.0016 24.9 2.6 23 212-234 26-57 (70)
13 PRK13456 DNA protection protei 23.8 82 0.0018 28.5 3.1 43 209-252 50-98 (186)
14 PF11493 TSP9: Thylakoid solub 23.4 38 0.00082 27.2 0.8 13 107-119 68-80 (80)
15 PF13709 DUF4159: Domain of un 22.5 53 0.0011 29.0 1.6 23 197-219 59-81 (207)
16 TIGR00315 cdhB CO dehydrogenas 22.2 57 0.0012 28.4 1.7 60 144-220 92-159 (162)
17 PF06212 GRIM-19: GRIM-19 prot 21.5 78 0.0017 26.9 2.4 22 203-226 71-92 (130)
18 COG2144 Selenophosphate synthe 20.9 77 0.0017 31.0 2.5 47 151-225 161-207 (324)
No 1
>PF04062 P21-Arc: ARP2/3 complex ARPC3 (21 kDa) subunit; InterPro: IPR007204 The Arp2/3 complex is a seven-protein assembly that is critical for actin nucleation and branching in cells. Arp2/3 nucleates new actin filaments while bound to existing filaments, thus creating a branched network []. The complex consists of Arp2, Arp3, p41, p34, p21, p20 and p16. Subunits p34 and p20 constitute the core of the structure, with the remaining subunits located peripherally []. This entry describes the p21 subunit. Proteins such as WASp and Scar1 may mediate receptor signalling through interactions with p21-Arc, resulting in the activation of Arc2/3 complex activity [].; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 3DWL_J 2P9P_E 2P9N_E 2P9K_E 1TYQ_E 1U2V_E 3RSE_E 2P9U_E 3DXM_E 2P9S_E ....
Probab=100.00 E-value=7.8e-88 Score=579.25 Aligned_cols=173 Identities=63% Similarity=1.179 Sum_probs=125.2
Q ss_pred CCCccccCCCCC--ceecceeecccccCCCCCCCCCCCCCcchHHHHHHhhhhhccccccccCCCCceehhhHHHHHHHH
Q psy16823 1 MPAYHSTLTDFN--QCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYEIKSEADRLLIYITLYITEC 78 (263)
Q Consensus 1 mpayhS~~~~~~--~~vgn~a~lP~kt~~rGPap~~~~~~~DIidEal~~fkaNvffr~~eik~~aDr~liY~tlyi~~c 78 (263)
||||||+|++.. +.|||||||||||++|||||+.+++++|||||||+|||||||||||||||+|||+|||+||||+||
T Consensus 1 MPAYHS~f~~~~~~~~iGn~~lLPlrt~~rGPAp~~~~~~~DIIDEaL~~FraNvfFrnfeIKg~aDR~LIYltLyi~eC 80 (175)
T PF04062_consen 1 MPAYHSSFNDDESVRLIGNMALLPLRTKFRGPAPRPDDSDYDIIDEALYLFRANVFFRNFEIKGPADRLLIYLTLYISEC 80 (175)
T ss_dssp ----------TT--EEETTEEE--B--SS-SS--B--SSS--HHHHHHHHHHHHTT-S-----SHHCHHHHHHHHHHHCH
T ss_pred CCCccccccCCCCceeEcCeeeeecccCCCCCCCCCCCCcccHHHHHHHHHHhhhhhhccccCCCCceEeeeHHHHHHHH
Confidence 999999999965 899999999999999999998778999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCHHHHHHHHHHHHhhcCCCCCCCCCCCCcccccchhhHHHHHHHhhhcCcceeeeeceeeeeccCCCcceeh
Q psy16823 79 LKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQNLLFKAKKLKEANGYKFVWVRDCKIMIRKNESSRIYV 158 (263)
Q Consensus 79 Lkkl~~~~~k~~~~~~~~~la~~~f~~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vfFrNfeI~~~KgpaDRILF 158 (263)
||||++|++++||+|+|+++|+++|+
T Consensus 81 Lkkl~~~~sk~ea~k~l~~lal~~F~------------------------------------------------------ 106 (175)
T PF04062_consen 81 LKKLQKCTSKNEAQKELYNLALDNFP------------------------------------------------------ 106 (175)
T ss_dssp HHHHTT-SSHHHHHHHHHHHHHS---------------------------------------------------------
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcCC------------------------------------------------------
Confidence 99999999999999999999999999
Q ss_pred hhHHHhhhccCCCcccchHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy16823 159 IRNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQSQNEADLMKNYLTQVRQETGLRVCERVFNTPDG 238 (263)
Q Consensus 159 IsdCL~KL~k~~~k~EA~Kel~nlAL~NfalPgD~~FpLPG~~gFPLN~~E~~~~r~Yl~q~Rqe~~~Rl~erv~~~~~~ 238 (263)
+|||++|||+|.+..|.|.+|+|.||+||+|+|||+|.|||||||.+++|
T Consensus 107 ------------------------------iPGd~gFpLn~~y~~P~~~~e~d~lR~Yl~QlRqElg~RL~ervf~~~~~ 156 (175)
T PF04062_consen 107 ------------------------------IPGDPGFPLNSLYAKPANRQEADLLRQYLTQLRQELGLRLLERVFDDGDG 156 (175)
T ss_dssp -------------------------------TTSTT-TTTTTS---SSHHHHHHHHHHHHHHHHHHCCCCCHHHB-SSSS
T ss_pred ------------------------------CCCCCCCCccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 77777777788888888999999999999999999999999999999899
Q ss_pred CCCeeeecccccccccccc
Q psy16823 239 KPSKWWLCFSKKRFMDKSL 257 (263)
Q Consensus 239 ~psKwWl~f~kr~Fm~ksl 257 (263)
+||||||||+|||||||||
T Consensus 157 ~psKwW~~FaKRkFM~KsL 175 (175)
T PF04062_consen 157 KPSKWWMCFAKRKFMNKSL 175 (175)
T ss_dssp -B-HCCCCCCC--GGG--T
T ss_pred CCChhhhhhhhhccccccC
Confidence 9999999999999999997
No 2
>KOG3155|consensus
Probab=100.00 E-value=4.5e-83 Score=547.05 Aligned_cols=172 Identities=63% Similarity=1.190 Sum_probs=166.0
Q ss_pred CCCccccCCCCC-ceecceeecccccCCCCCCCCCCCCCcchHHHHHHhhhhhccccccccCCCCceehhhHHHHHHHHH
Q psy16823 1 MPAYHSTLTDFN-QCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYEIKSEADRLLIYITLYITECL 79 (263)
Q Consensus 1 mpayhS~~~~~~-~~vgn~a~lP~kt~~rGPap~~~~~~~DIidEal~~fkaNvffr~~eik~~aDr~liY~tlyi~~cL 79 (263)
||||||+|.|.. ..+||||+|||+|++|||||+. +.+.|||||||+|||||||||||||||||||+|||+||||+|||
T Consensus 1 MpAyhSsf~d~~~~~~~n~alLpl~s~fkGPAp~~-~~d~DIvDEai~yFkaNvFFknfEIK~~ADRtLIYitlyIseCL 79 (173)
T KOG3155|consen 1 MPAYHSSFMDPDNKLIGNMALLPIRSQFKGPAPRE-TKDTDIVDEAIYYFKANVFFKNFEIKNPADRTLIYITLYISECL 79 (173)
T ss_pred CCcccccccCcCCCccCcceeccchhhccCCCCCc-cCccchHHHHHHHhhcccceecceecCccceeEEEeehHHHHHH
Confidence 999999999954 6789999999999999999985 58899999999999999999999999999999999999999999
Q ss_pred HhhhcCCCHHHHHHHHHHHHhhcCCCCCCCCCCCCcccccchhhHHHHHHHhhhcCcceeeeeceeeeeccCCCcceehh
Q psy16823 80 KKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQNLLFKAKKLKEANGYKFVWVRDCKIMIRKNESSRIYVI 159 (263)
Q Consensus 80 kkl~~~~~k~~~~~~~~~la~~~f~~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vfFrNfeI~~~KgpaDRILFI 159 (263)
||||+|.++.||+|+||+||+++|+
T Consensus 80 kkLqkc~sk~qg~k~l~~lal~~~~------------------------------------------------------- 104 (173)
T KOG3155|consen 80 KKLQKCNSKSQGEKELYNLALENFP------------------------------------------------------- 104 (173)
T ss_pred HHHHcccchhHHHHHHHHhhhhccc-------------------------------------------------------
Confidence 9999999999999999999999998
Q ss_pred hHHHhhhccCCCcccchHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy16823 160 RNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQSQNEADLMKNYLTQVRQETGLRVCERVFNTPDGK 239 (263)
Q Consensus 160 sdCL~KL~k~~~k~EA~Kel~nlAL~NfalPgD~~FpLPG~~gFPLN~~E~~~~r~Yl~q~Rqe~~~Rl~erv~~~~~~~ 239 (263)
+||++||||||.++-|.|++|+|.||+|++|+|||+|.|||++||.+++++
T Consensus 105 -----------------------------iPGe~GFPln~ly~~p~s~~~~e~mr~Yl~Q~RqE~~~RL~~~v~~~~~d~ 155 (173)
T KOG3155|consen 105 -----------------------------IPGEPGFPLNALYTLPASKQDAELMRAYLQQFRQETGLRLLEKVYDTPKDK 155 (173)
T ss_pred -----------------------------CCCCCCCCchhhhcCCCCCCchHHHHHHHHHHHHHhhhhHHHHhcCCCCCC
Confidence 888889999999999999999999999999999999999999999999999
Q ss_pred CCeeeecccccccccccc
Q psy16823 240 PSKWWLCFSKKRFMDKSL 257 (263)
Q Consensus 240 psKwWl~f~kr~Fm~ksl 257 (263)
|||||+||+|||||||||
T Consensus 156 PsKwW~cF~kRrFMnksl 173 (173)
T KOG3155|consen 156 PSKWWLCFAKRRFMNKSL 173 (173)
T ss_pred cchhHHHHHHHHhhhccC
Confidence 999999999999999997
No 3
>PF04062 P21-Arc: ARP2/3 complex ARPC3 (21 kDa) subunit; InterPro: IPR007204 The Arp2/3 complex is a seven-protein assembly that is critical for actin nucleation and branching in cells. Arp2/3 nucleates new actin filaments while bound to existing filaments, thus creating a branched network []. The complex consists of Arp2, Arp3, p41, p34, p21, p20 and p16. Subunits p34 and p20 constitute the core of the structure, with the remaining subunits located peripherally []. This entry describes the p21 subunit. Proteins such as WASp and Scar1 may mediate receptor signalling through interactions with p21-Arc, resulting in the activation of Arc2/3 complex activity [].; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 3DWL_J 2P9P_E 2P9N_E 2P9K_E 1TYQ_E 1U2V_E 3RSE_E 2P9U_E 3DXM_E 2P9S_E ....
Probab=99.85 E-value=2.4e-22 Score=173.95 Aligned_cols=77 Identities=34% Similarity=0.512 Sum_probs=59.9
Q ss_pred eeeeceeeeeccCCCcc-----eehhhHHHhhhccCCCcccchHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCc-hHHH
Q psy16823 139 VWVRDCKIMIRKNESSR-----IYVIRNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQSQN-EADL 212 (263)
Q Consensus 139 vfFrNfeI~~~KgpaDR-----ILFIsdCL~KL~k~~~k~EA~Kel~nlAL~NfalPgD~~FpLPG~~gFPLN~~-E~~~ 212 (263)
|||||||| |||||| ||||++||+||++|+++.||+|+|+++|| ++|+|||++|||||+- ++..
T Consensus 55 vfFrnfeI---Kg~aDR~LIYltLyi~eCLkkl~~~~sk~ea~k~l~~lal--------~~F~iPGd~gFpLn~~y~~P~ 123 (175)
T PF04062_consen 55 VFFRNFEI---KGPADRLLIYLTLYISECLKKLQKCTSKNEAQKELYNLAL--------DNFPIPGDPGFPLNSLYAKPA 123 (175)
T ss_dssp TT-S--------SHHCHHHHHHHHHHHCHHHHHTT-SSHHHHHHHHHHHHH--------S----TTSTT-TTTTTS---S
T ss_pred hhhhcccc---CCCCceEeeeHHHHHHHHHHHhccCCCHHHHHHHHHHHHH--------hcCCCCCCCCCCccccccCCC
Confidence 89999999 999999 99999999999999999999999999999 5999999999999999 7788
Q ss_pred HHHHHHHHHHHHHH
Q psy16823 213 MKNYLTQVRQETGL 226 (263)
Q Consensus 213 ~r~Yl~q~Rqe~~~ 226 (263)
-++-.+++||++.+
T Consensus 124 ~~~e~d~lR~Yl~Q 137 (175)
T PF04062_consen 124 NRQEADLLRQYLTQ 137 (175)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHH
Confidence 99999999999986
No 4
>KOG3155|consensus
Probab=99.79 E-value=2.6e-20 Score=160.81 Aligned_cols=84 Identities=33% Similarity=0.509 Sum_probs=72.0
Q ss_pred eeeeceeeeeccCCCcc-----eehhhHHHhhhccCCCcccchHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCc-hHHH
Q psy16823 139 VWVRDCKIMIRKNESSR-----IYVIRNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQSQN-EADL 212 (263)
Q Consensus 139 vfFrNfeI~~~KgpaDR-----ILFIsdCL~KL~k~~~k~EA~Kel~nlAL~NfalPgD~~FpLPG~~gFPLN~~-E~~~ 212 (263)
|||||||| |||||| |||||+||+||++|+++.+|+|+++++|| ++|+|||++|||+|.- ....
T Consensus 53 vFFknfEI---K~~ADRtLIYitlyIseCLkkLqkc~sk~qg~k~l~~lal--------~~~~iPGe~GFPln~ly~~p~ 121 (173)
T KOG3155|consen 53 VFFKNFEI---KNPADRTLIYITLYISECLKKLQKCNSKSQGEKELYNLAL--------ENFPIPGEPGFPLNALYTLPA 121 (173)
T ss_pred cceeccee---cCccceeEEEeehHHHHHHHHHHcccchhHHHHHHHHhhh--------hcccCCCCCCCCchhhhcCCC
Confidence 89999999 999999 89999999999999999999999999998 6999999999999987 4455
Q ss_pred HHHHHHHHHHHHHH---HHHHHhc
Q psy16823 213 MKNYLTQVRQETGL---RVCERVF 233 (263)
Q Consensus 213 ~r~Yl~q~Rqe~~~---Rl~erv~ 233 (263)
-++-.+-+|+++-+ ++.-|+.
T Consensus 122 s~~~~e~mr~Yl~Q~RqE~~~RL~ 145 (173)
T KOG3155|consen 122 SKQDAELMRAYLQQFRQETGLRLL 145 (173)
T ss_pred CCCchHHHHHHHHHHHHHhhhhHH
Confidence 55666777766654 5555554
No 5
>PF09254 Endonuc-FokI_C: Restriction endonuclease FokI, C terminal; InterPro: IPR015334 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents the C-terminal domain of FokI restriction endonucleases, which adopts a structure consisting of an alpha/beta/alpha core containing a five-stranded beta-sheet. FokI recognises the double-stranded DNA sequence 5'-GGATG-3' and cleave DNA phosphodiester groups 9 base pairs away on this strand and 13 base pairs away on the complementary strand [, ].; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 1FOK_A 2FOK_B.
Probab=85.43 E-value=0.64 Score=41.92 Aligned_cols=37 Identities=24% Similarity=0.565 Sum_probs=24.2
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeeeecccc
Q psy16823 202 AKPQSQNEADLMKNYLTQVRQETGLRVCERVFNTPDGKPSKWWLCFSK 249 (263)
Q Consensus 202 gFPLN~~E~~~~r~Yl~q~Rqe~~~Rl~erv~~~~~~~psKwWl~f~k 249 (263)
|++++-..+|.|-.|+++.|.. ++.-.|+|||-+|.+
T Consensus 84 GYsl~i~q~DeM~RYI~~n~~R-----------d~~~npnkWWe~f~~ 120 (189)
T PF09254_consen 84 GYSLPISQADEMIRYIEENQER-----------DEKRNPNKWWENFPE 120 (189)
T ss_dssp -B---HHHHHHHHHHHHHHHH-------------TTTSTT-GGGGS-T
T ss_pred CcCCCcccHHHHHHHHHHHhcc-----------cccCCCchhHHhccc
Confidence 4677778899999999988753 234469999999987
No 6
>cd00126 PAH Pancreatic Hormone domain, a regulator of pancreatic and gastrointestinal functions; neuropeptide Y (NPY)b, peptide YY (PYY), and pancreatic polypetide (PP) are closely related; propeptide is enzymatically cleaved to yield the mature active peptide with amidated C-terminal ends; receptor binding and activation functions may reside in the N- and C-termini respectively; occurs in neurons, intestinal endocrine cells, and pancreas; exist as monomers and dimers
Probab=80.12 E-value=3.6 Score=28.43 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=21.5
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHH
Q psy16823 199 SVYAKPQSQNEADLMKNYLTQVRQETGL 226 (263)
Q Consensus 199 G~~gFPLN~~E~~~~r~Yl~q~Rqe~~~ 226 (263)
..+..|.+.+-.|.|++|+++||+++..
T Consensus 3 ~~P~~Pg~~a~~eel~~Y~~~L~~Yinl 30 (36)
T cd00126 3 SKPENPGDDASPEELRQYLAALREYINL 30 (36)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3444565666689999999999999764
No 7
>smart00309 PAH Pancreatic hormones / neuropeptide F / peptide YY family. Pancreatic hormone is a regulator of pancreatic and gastrointestinal functions.
Probab=79.57 E-value=3.9 Score=28.31 Aligned_cols=29 Identities=21% Similarity=0.390 Sum_probs=21.8
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q psy16823 198 NSVYAKPQSQNEADLMKNYLTQVRQETGL 226 (263)
Q Consensus 198 PG~~gFPLN~~E~~~~r~Yl~q~Rqe~~~ 226 (263)
|..+..|.+..-.|.|++|+.+||+++.+
T Consensus 2 p~~P~~Pg~~a~~e~l~~Y~~~L~~Yinl 30 (36)
T smart00309 2 PSKPERPGDDASPEDLRQYLAALREYINL 30 (36)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34455566666667799999999999764
No 8
>PF00159 Hormone_3: Pancreatic hormone peptide; InterPro: IPR001955 Pancreatic hormone (PP) [] is a peptide synthesized in pancreatic islets of Langherhans, which acts as a regulator of pancreatic and gastrointestinal functions. The hormone is produced as a larger propeptide, which is enzymatically cleaved to yield the mature active peptide: this is 36 amino acids in length [] and has an amidated C terminus []. The hormone has a globular structure, residues 2-8 forming a left-handed poly-proline-II-like helix, residues 9-13 a beta turn, and 14-32 an alpha-helix,held close to the first helix by hydrophobic interactions []. Unlike glucagon, another peptide hormone, the structure of pancreatic peptide is preserved in aqueous solution []. Both N and C termini are required for activity: receptor binding and activation functions may reside in the N and C termini respectively []. Pancreatic hormone is part of a wider family of active peptides that includes: Neuropeptide Y (NPY) [], one of the most abundant peptides in the mammalian nervous system. NPY is implicated in the control of feeding and the secretion of the gonadotrophin-releasing hormone. Peptide YY (PYY) []. PPY is a gut peptide that inhibits exocrine pancreatic secretion, has a vasoconstrictory action and inhibits jejunal and colonic mobility. Various NPY and PYY-like polypeptides from fish and amphibians [, ]. Neuropeptide F (NPF) from invertebrates such as worms and snail. Skin peptide Tyr-Tyr (SPYY) from the frog Phyllomedusa bicolor. SPYY shows a large spectra of antibacterial and antifungal activity. All these peptides are 36 to 39 amino acids long. Like most active peptides, their C-terminal is amidated and they are synthesized as larger protein precursors.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1LJV_A 1BBA_A 1V1D_A 1PPT_A 2H3T_A 2H4B_A 2BF9_A 2H3S_B 1K8V_A 2DF0_A ....
Probab=78.12 E-value=4.4 Score=27.93 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=21.5
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q psy16823 198 NSVYAKPQSQNEADLMKNYLTQVRQETGL 226 (263)
Q Consensus 198 PG~~gFPLN~~E~~~~r~Yl~q~Rqe~~~ 226 (263)
|..+..|.+..-.|.|++|+.+||+++..
T Consensus 2 p~~P~~P~~~aspeel~~Y~~~L~~Y~~l 30 (36)
T PF00159_consen 2 PSKPERPGDFASPEELAQYYAALRHYINL 30 (36)
T ss_dssp -SSSSSSSTTSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 33455566666678899999999999764
No 9
>KOG3420|consensus
Probab=38.52 E-value=11 Score=34.03 Aligned_cols=60 Identities=27% Similarity=0.204 Sum_probs=44.5
Q ss_pred ccccCCCCC-----ceecceeecccccCCCCCCCCCCCCCcchHHHHHHhhhhhccccccccCCCCceehhh
Q psy16823 4 YHSTLTDFN-----QCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYEIKSEADRLLIY 70 (263)
Q Consensus 4 yhS~~~~~~-----~~vgn~a~lP~kt~~rGPap~~~~~~~DIidEal~~fkaNvffr~~eik~~aDr~liY 70 (263)
.|+|+.|.. +..|++.||-+-+.+-||..- --.||=+|||..|+-|.- .|||.- |-+--|
T Consensus 40 Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~v---lGfDIdpeALEIf~rNae--EfEvqi--dlLqcd 104 (185)
T KOG3420|consen 40 IHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESV---LGFDIDPEALEIFTRNAE--EFEVQI--DLLQCD 104 (185)
T ss_pred HHhhhccccCcchhhhcCchhhhHHHhhcCCCceE---EeeecCHHHHHHHhhchH--Hhhhhh--heeeee
Confidence 599999843 467889999988877776543 347999999999999974 566653 555444
No 10
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=35.59 E-value=59 Score=32.06 Aligned_cols=63 Identities=25% Similarity=0.408 Sum_probs=44.7
Q ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHhhcCCCCCCCCCCCCcccccchhhHHHHHHHhhhcCcceeeeeceeeeeccCCC
Q psy16823 74 YITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQNLLFKAKKLKEANGYKFVWVRDCKIMIRKNES 153 (263)
Q Consensus 74 yi~~cLkkl~~~~~k~~~~~~~~~la~~~f~~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vfFrNfeI~~~Kgpa 153 (263)
-++|||+-|...-.++|....|..| +.+++ .|+|+-
T Consensus 105 tlsECl~Li~eGcp~eei~~~L~~l-i~~IP---------------------~A~K~a---------------------- 140 (353)
T PF15297_consen 105 TLSECLNLIEEGCPKEEILATLSDL-IKNIP---------------------DAKKLA---------------------- 140 (353)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH-HhcCc---------------------hHHHHH----------------------
Confidence 5789999999876778866666554 55665 233321
Q ss_pred cceehhhHHHhhhccCCCcccchHHHHHHhh
Q psy16823 154 SRIYVIRNCLKKLQKCPTKAQGQNEMYSLAL 184 (263)
Q Consensus 154 DRILFIsdCL~KL~k~~~k~EA~Kel~nlAL 184 (263)
.++| |+.||.+-.+.-|-.-.++..|+
T Consensus 141 --KYWI--C~Arl~~~~~~~e~vi~iyEeAi 167 (353)
T PF15297_consen 141 --KYWI--CLARLEPRTGPIEDVIAIYEEAI 167 (353)
T ss_pred --HHHH--HHHHHHhhcCCHHHHHHHHHHHH
Confidence 1222 99999987777777788888888
No 11
>COG3657 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.91 E-value=67 Score=26.79 Aligned_cols=59 Identities=27% Similarity=0.339 Sum_probs=43.8
Q ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHhhcCCCCCCCCCCCCcccccchhhHHHHHHHhhhcCcceeeeeceeeeeccCCC
Q psy16823 74 YITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQNLLFKAKKLKEANGYKFVWVRDCKIMIRKNES 153 (263)
Q Consensus 74 yi~~cLkkl~~~~~k~~~~~~~~~la~~~f~~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vfFrNfeI~~~Kgpa 153 (263)
-.++-+++|.....|+.-..-+..||+.+| ||.+=+=.+| ||..|..||+
T Consensus 11 ~F~~W~~kLkD~~Aka~I~~Rl~rl~~GN~---GD~kpvgeGV---------------------------~ELRId~GpG 60 (100)
T COG3657 11 TFSEWLKKLKDRRAKAKIAARLDRLALGNF---GDVKPVGEGV---------------------------SELRIDHGPG 60 (100)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhcCCC---cCccccccch---------------------------hhheeccCCc
Confidence 457788999887778888889999987665 4555444433 5778889999
Q ss_pred cceehhhHH
Q psy16823 154 SRIYVIRNC 162 (263)
Q Consensus 154 DRILFIsdC 162 (263)
.||+|.+.-
T Consensus 61 yRvY~~~~g 69 (100)
T COG3657 61 YRVYFQQRG 69 (100)
T ss_pred eEEEEEecC
Confidence 998887653
No 12
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=24.21 E-value=76 Score=24.87 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHH---------HHHHHhcC
Q psy16823 212 LMKNYLTQVRQETGL---------RVCERVFN 234 (263)
Q Consensus 212 ~~r~Yl~q~Rqe~~~---------Rl~erv~~ 234 (263)
.+|+-+.|+||||+. ||+.|+..
T Consensus 26 ~LRk~l~~~rqELs~aLYq~DAA~RViArl~k 57 (70)
T PF08606_consen 26 TLRKQLDQTRQELSHALYQHDAACRVIARLLK 57 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 478999999999986 66666654
No 13
>PRK13456 DNA protection protein DPS; Provisional
Probab=23.76 E-value=82 Score=28.46 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHH-HHHHH--HHHHHhc---CCCCCCCCeeeeccccccc
Q psy16823 209 EADLMKNYLTQVR-QETGL--RVCERVF---NTPDGKPSKWWLCFSKKRF 252 (263)
Q Consensus 209 E~~~~r~Yl~q~R-qe~~~--Rl~erv~---~~~~~~psKwWl~f~kr~F 252 (263)
+++.++..+++-+ +|++- +|++|++ .+|+..|.+||- .+.+.+
T Consensus 50 ~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~~~~~-ls~~~~ 98 (186)
T PRK13456 50 EGEGLKEIAEDARLEDRNHFEALVPRIYELGGKLPRDIREFHD-ISACPD 98 (186)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHhh-hhcCcc
Confidence 4566788899999 77764 8999988 677777888763 444444
No 14
>PF11493 TSP9: Thylakoid soluble phosphoprotein TSP9; InterPro: IPR021584 The plant-specific protein, TSP9 is phosphorylated and released in response to changing light conditions from the photosynthetic membrane. The protein resembles the characteristics of transcription/translation regulatory factors. The structure of the protein is predicted to consist of a random coil []. ; PDB: 2FFT_A.
Probab=23.43 E-value=38 Score=27.24 Aligned_cols=13 Identities=46% Similarity=0.884 Sum_probs=6.6
Q ss_pred CCCCCCCCccccc
Q psy16823 107 GEAGFPLNSVYAK 119 (263)
Q Consensus 107 g~~~~~l~~~~~~ 119 (263)
|.+||.||++|++
T Consensus 68 G~GGf~lGgLFaK 80 (80)
T PF11493_consen 68 GFGGFSLGGLFAK 80 (80)
T ss_dssp -S--S-SSSSS--
T ss_pred CCCcccccccccC
Confidence 6789999999975
No 15
>PF13709 DUF4159: Domain of unknown function (DUF4159)
Probab=22.48 E-value=53 Score=29.02 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=19.6
Q ss_pred CCCCCCCCCCCchHHHHHHHHHH
Q psy16823 197 LNSVYAKPQSQNEADLMKNYLTQ 219 (263)
Q Consensus 197 LPG~~gFPLN~~E~~~~r~Yl~q 219 (263)
++|.-.++++..|.+.+|+||++
T Consensus 59 ~~g~~~~~~s~~e~~~Lr~Yl~~ 81 (207)
T PF13709_consen 59 WPGHGDFPLSDEEIANLRRYLEN 81 (207)
T ss_pred EeCCCCCCCCHHHHHHHHHHHHc
Confidence 46777778999999999999975
No 16
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=22.16 E-value=57 Score=28.40 Aligned_cols=60 Identities=18% Similarity=0.341 Sum_probs=35.3
Q ss_pred eeeeeccCCCcceehh-------hHHHhhhccCCCcccchHHHHHHhhhhcCCCCCCCCCCCCCCCCC-CCCchHHHHHH
Q psy16823 144 CKIMIRKNESSRIYVI-------RNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKP-QSQNEADLMKN 215 (263)
Q Consensus 144 feI~~~KgpaDRILFI-------sdCL~KL~k~~~k~EA~Kel~nlAL~NfalPgD~~FpLPG~~gFP-LN~~E~~~~r~ 215 (263)
+|.|--+|++|-|||| ++-|+-|+... + +-+++|.++ +.=+.+++|| ++ .|.+.+
T Consensus 92 ~e~~~g~g~~DlvlfvG~~~y~~~~~ls~lk~f~-~------~~~i~l~~~-------y~pnA~~Sf~n~~---~~~~~~ 154 (162)
T TIGR00315 92 WEGFDGEGNYDLVLFLGIIYYYLSQMLSSLKHFS-H------IVTIAIDKY-------YQPNADYSFPNLS---KDEYLD 154 (162)
T ss_pred hhhccCCCCcCEEEEeCCcchHHHHHHHHHHhhc-C------cEEEEecCC-------CCCCCceeccccC---HHHHHH
Confidence 4443345888887764 66777776444 1 234555444 4445688888 33 444778
Q ss_pred HHHHH
Q psy16823 216 YLTQV 220 (263)
Q Consensus 216 Yl~q~ 220 (263)
||+.+
T Consensus 155 ~l~~~ 159 (162)
T TIGR00315 155 YLRKL 159 (162)
T ss_pred HHHHH
Confidence 87654
No 17
>PF06212 GRIM-19: GRIM-19 protein; InterPro: IPR009346 This family consists of several eukaryotic gene associated with retinoic-interferon-induced mortality 19 (GRIM-19) proteins. GRIM-19, was reported to encode a small protein primarily distributed in the nucleus and was able to promote cell death induced by IFN-beta and RA. A bovine homologue of GRIM-19 was co-purified with mitochondrial NADH:ubiquinone oxidoreductase (complex I) in bovine heart. Therefore, its exact cellular localisation and function are unclear. It has now been discovered that GRIM-19 is a specific interacting protein which negatively regulates Stat3 activity [].
Probab=21.48 E-value=78 Score=26.87 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=14.7
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHH
Q psy16823 203 KPQSQNEADLMKNYLTQVRQETGL 226 (263)
Q Consensus 203 FPLN~~E~~~~r~Yl~q~Rqe~~~ 226 (263)
.|+=++|. .|.||+|+|.....
T Consensus 71 ~PlLqAE~--DR~~lr~~~~~~~~ 92 (130)
T PF06212_consen 71 LPLLQAEE--DRRYLRRLKANREE 92 (130)
T ss_pred hHHHHHHH--HHHHHHHHHHHHHH
Confidence 46555555 45699998887665
No 18
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=20.87 E-value=77 Score=31.04 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=35.7
Q ss_pred CCCcceehhhHHHhhhccCCCcccchHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHH
Q psy16823 151 NESSRIYVIRNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQSQNEADLMKNYLTQVRQETG 225 (263)
Q Consensus 151 gpaDRILFIsdCL~KL~k~~~k~EA~Kel~nlAL~NfalPgD~~FpLPG~~gFPLN~~E~~~~r~Yl~q~Rqe~~ 225 (263)
-|+|+++|+.|--.|+ . ++||+.++. ..-.+.+.+|.+++-+|+-.-
T Consensus 161 k~GD~lI~~~d~~g~~------------------------~-p~~P~~wDt---tt~ka~~~~~~~~e~l~e~a~ 207 (324)
T COG2144 161 KPGDLLIFVGDLDGKP------------------------Y-PNFPLNWDT---TTMKAKEKFRAQLELLREGAK 207 (324)
T ss_pred CcCCEEEEEeccCCCc------------------------C-CCCCccccc---eeeccHHHHHHHHHHHHHHHH
Confidence 4678888887765543 2 589999998 455588999999999987554
Done!