Query psy16823
Match_columns 263
No_of_seqs 151 out of 224
Neff 2.7
Searched_HMMs 29240
Date Fri Aug 16 22:58:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16823.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16823hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1k8k_E P21, ARP2/3 complex 21 100.0 2.1E-89 7.1E-94 589.1 15.4 177 1-262 1-178 (178)
2 3dwl_E Actin-related protein 2 100.0 9.5E-87 3.3E-91 571.0 -5.5 172 1-257 1-174 (174)
3 1k8k_E P21, ARP2/3 complex 21 99.9 6.4E-23 2.2E-27 176.7 3.5 84 139-233 53-145 (178)
4 3dwl_E Actin-related protein 2 99.8 2.8E-22 9.5E-27 172.3 -2.8 83 139-233 55-146 (174)
5 1f8p_A Neuropeptide Y (PNPY); 82.4 1.1 3.9E-05 30.2 3.1 29 198-226 2-30 (37)
6 2bf9_A Pancreatic hormone; tur 71.1 6 0.00021 26.6 4.1 29 198-226 2-30 (36)
7 2fok_A R.FOKI, FOKI restrictio 66.3 3.3 0.00011 41.2 3.0 38 202-250 474-511 (579)
8 1bba_A Bovine pancreatic polyp 65.7 6.5 0.00022 26.4 3.5 29 198-226 2-30 (36)
9 1qbf_A Peptide YY, PYY; PP-fol 56.4 1.1 3.8E-05 30.3 -1.6 29 198-226 2-30 (37)
10 2l60_A Peptide YY; GPCR ligand 48.1 9.2 0.00032 26.3 1.9 23 204-226 12-34 (41)
11 1buu_A Protein (mannose-bindin 20.9 58 0.002 25.3 2.6 38 189-226 2-41 (168)
No 1
>1k8k_E P21, ARP2/3 complex 21 kDa subunit, P21-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.148.1.1 PDB: 1tyq_E* 1u2v_E* 2p9i_E* 2p9k_E* 2p9l_E 2p9n_E* 2p9p_E* 2p9s_E* 2p9u_E* 3dxk_E* 3dxm_E* 3rse_E
Probab=100.00 E-value=2.1e-89 Score=589.10 Aligned_cols=177 Identities=62% Similarity=1.194 Sum_probs=165.0
Q ss_pred CCCccccCCCC-CceecceeecccccCCCCCCCCCCCCCcchHHHHHHhhhhhccccccccCCCCceehhhHHHHHHHHH
Q psy16823 1 MPAYHSTLTDF-NQCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYEIKSEADRLLIYITLYITECL 79 (263)
Q Consensus 1 mpayhS~~~~~-~~~vgn~a~lP~kt~~rGPap~~~~~~~DIidEal~~fkaNvffr~~eik~~aDr~liY~tlyi~~cL 79 (263)
||||||+|++. .+.|||||||||||++|||||+ .++++|||||||+|||||||||||||||+|||+|||+||||+|||
T Consensus 1 MPAYHS~f~~~~~~~vgn~~lLPlrt~~rGPAp~-~~~~~DIiDEal~~FraNvfFrnfeIkg~ADR~LIYltlyi~eCL 79 (178)
T 1k8k_E 1 MPAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPR-ETKDTDIVDEAIYYFKANVFFKNYEIKNEADRTLIYITLYISECL 79 (178)
T ss_dssp -CCCCCCCCCTTCEEETTEEECCBCCSSCSSCCB-CCSSCCHHHHHHHHHHHHTTCSCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCcccchhcccccceEcceeEEeeeccCCCCCCC-CCCccchHHHHHHHHHhhhhhhccccCCCCceEeeeHHHHHHHHH
Confidence 99999999985 4689999999999999999998 689999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCHHHHHHHHHHHHhhcCCCCCCCCCCCCcccccchhhHHHHHHHhhhcCcceeeeeceeeeeccCCCcceehh
Q psy16823 80 KKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQNLLFKAKKLKEANGYKFVWVRDCKIMIRKNESSRIYVI 159 (263)
Q Consensus 80 kkl~~~~~k~~~~~~~~~la~~~f~~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vfFrNfeI~~~KgpaDRILFI 159 (263)
|||++|++++||+|+|+++|+++|+
T Consensus 80 kkl~~~~~k~ea~k~l~~lal~~F~------------------------------------------------------- 104 (178)
T 1k8k_E 80 KKLQKCNSKSQGEKEMYTLGITNFP------------------------------------------------------- 104 (178)
T ss_dssp HHHTSCCSHHHHHHHHHHHHHSCCC-------------------------------------------------------
T ss_pred HHhhcCCCHHHHHHHHHHHhhhcCC-------------------------------------------------------
Confidence 9999999999999999999999999
Q ss_pred hHHHhhhccCCCcccchHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy16823 160 RNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQSQNEADLMKNYLTQVRQETGLRVCERVFNTPDGK 239 (263)
Q Consensus 160 sdCL~KL~k~~~k~EA~Kel~nlAL~NfalPgD~~FpLPG~~gFPLN~~E~~~~r~Yl~q~Rqe~~~Rl~erv~~~~~~~ 239 (263)
+|||++|||+|.+..|.|.+|+|+||+||+|+|||+|.|||||||.+++|+
T Consensus 105 -----------------------------iPGd~gFpLn~~y~~P~~~~e~d~lR~Yl~QlRqEl~~RL~ervf~~~~~~ 155 (178)
T 1k8k_E 105 -----------------------------IPGEPGFPLNAIYAKPANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDK 155 (178)
T ss_dssp -----------------------------CTTSTTCTTTTTSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSSSC
T ss_pred -----------------------------CCCCCCCCccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 777777777888888999999999999999999999999999999988999
Q ss_pred CCeeeecccccccccccccCCCC
Q psy16823 240 PSKWWLCFSKKRFMDKSLTALGQ 262 (263)
Q Consensus 240 psKwWl~f~kr~Fm~ksl~~~g~ 262 (263)
||||||||+|||||||||++|||
T Consensus 156 psKwWl~FaKRkFM~ksls~pg~ 178 (178)
T 1k8k_E 156 PSKWWTCFVKRQFMNKSLSGPGQ 178 (178)
T ss_dssp BCHHHHTTTTCCGGGCCCC----
T ss_pred CCccceeehhhhhhccccCCCCC
Confidence 99999999999999999999997
No 2
>3dwl_E Actin-related protein 2/3 complex subunit 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.5e-87 Score=570.97 Aligned_cols=172 Identities=51% Similarity=0.922 Sum_probs=62.9
Q ss_pred CCCccccCCCC--CceecceeecccccCCCCCCCCCCCCCcchHHHHHHhhhhhccccccccCCCCceehhhHHHHHHHH
Q psy16823 1 MPAYHSTLTDF--NQCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYEIKSEADRLLIYITLYITEC 78 (263)
Q Consensus 1 mpayhS~~~~~--~~~vgn~a~lP~kt~~rGPap~~~~~~~DIidEal~~fkaNvffr~~eik~~aDr~liY~tlyi~~c 78 (263)
||||||+|++. .+.|||||+|||||++|||||+.+++++|||||||+|||||||||||||||+|||+|||+||||+||
T Consensus 1 MPAYHS~f~~~~~~~~iGn~~lLPlrt~~rGPA~~~~~~~~DIiDEal~~FrANvfFrnfeIkg~ADR~LIYltlyi~~C 80 (174)
T 3dwl_E 1 MPAYHSSFLSLTDVPTTGNIAMLPLKTKFRGPAYPADESQMDIIDECIGLFRANCFFRNFEIKGPADRTLIYGTLFISEC 80 (174)
T ss_dssp -------------------------------------------CHHHHHHHHHHTTCCCC-----CTHHHHHHHHHHHSC
T ss_pred CCCccccccCCCcceeEccceeeeecccCCCCCCCCCCCCcChHHHHHHHHHhhhhhhccccCCCCceeeehHHHHHHHH
Confidence 99999999986 4899999999999999999999778889999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCHHHHHHHHHHHHhhcCCCCCCCCCCCCcccccchhhHHHHHHHhhhcCcceeeeeceeeeeccCCCcceeh
Q psy16823 79 LKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQNLLFKAKKLKEANGYKFVWVRDCKIMIRKNESSRIYV 158 (263)
Q Consensus 79 Lkkl~~~~~k~~~~~~~~~la~~~f~~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vfFrNfeI~~~KgpaDRILF 158 (263)
|+||++| +++||+|+|+++|+++|+
T Consensus 81 Lkkl~~~-sk~ea~k~l~~lal~~F~------------------------------------------------------ 105 (174)
T 3dwl_E 81 LGRVNGL-NYRDAERQLNSLALENFS------------------------------------------------------ 105 (174)
T ss_dssp C------------CCCCC--------------------------------------------------------------
T ss_pred HHHHhcc-CHHHHHHHHHHHHHhcCC------------------------------------------------------
Confidence 9999999 999999999999999999
Q ss_pred hhHHHhhhccCCCcccchHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy16823 159 IRNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQSQNEADLMKNYLTQVRQETGLRVCERVFNTPDG 238 (263)
Q Consensus 159 IsdCL~KL~k~~~k~EA~Kel~nlAL~NfalPgD~~FpLPG~~gFPLN~~E~~~~r~Yl~q~Rqe~~~Rl~erv~~~~~~ 238 (263)
+|||++|||+|.+..|.|.+|+|.||+||+|+|||+|.|||||||++++|
T Consensus 106 ------------------------------iPGd~gFpLn~~y~~P~~~~e~d~lR~Yl~QlRqEl~~RL~ervf~~~~~ 155 (174)
T 3dwl_E 106 ------------------------------IPGSAGFPLNALYAPPLSPQDAEIMRTYLTQFRQELAYRLLSHVYATEKD 155 (174)
T ss_dssp -------------------------------------------------------------CCGGGTTTTTC--------
T ss_pred ------------------------------CCCCCCCCccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 67777777777777888999999999999999999999999999999999
Q ss_pred CCCeeeecccccccccccc
Q psy16823 239 KPSKWWLCFSKKRFMDKSL 257 (263)
Q Consensus 239 ~psKwWl~f~kr~Fm~ksl 257 (263)
+||||||||+|||||||||
T Consensus 156 kpsKwWl~F~KRkFM~ksL 174 (174)
T 3dwl_E 156 HPSKWWTCFSKRRFMNKAL 174 (174)
T ss_dssp ---CTTSGGGGCCGGGC--
T ss_pred CccHHHHHHHHHhhhcccC
Confidence 9999999999999999997
No 3
>1k8k_E P21, ARP2/3 complex 21 kDa subunit, P21-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.148.1.1 PDB: 1tyq_E* 1u2v_E* 2p9i_E* 2p9k_E* 2p9l_E 2p9n_E* 2p9p_E* 2p9s_E* 2p9u_E* 3dxk_E* 3dxm_E* 3rse_E
Probab=99.86 E-value=6.4e-23 Score=176.73 Aligned_cols=84 Identities=33% Similarity=0.505 Sum_probs=78.3
Q ss_pred eeeeceeeeeccCCCcc-----eehhhHHHhhhccCCCcccchHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCc-hHHH
Q psy16823 139 VWVRDCKIMIRKNESSR-----IYVIRNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQSQN-EADL 212 (263)
Q Consensus 139 vfFrNfeI~~~KgpaDR-----ILFIsdCL~KL~k~~~k~EA~Kel~nlAL~NfalPgD~~FpLPG~~gFPLN~~-E~~~ 212 (263)
|||||||| |||||| ||||++||+||++|+++.||+|+++++|| ++|+|||++|||+|+- ++..
T Consensus 53 vfFrnfeI---kg~ADR~LIYltlyi~eCLkkl~~~~~k~ea~k~l~~lal--------~~F~iPGd~gFpLn~~y~~P~ 121 (178)
T 1k8k_E 53 VFFKNYEI---KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGI--------TNFPIPGEPGFPLNAIYAKPA 121 (178)
T ss_dssp TTCSCCCC---CSHHHHHHHHHHHHHHHHHHHHTSCCSHHHHHHHHHHHHH--------SCCCCTTSTTCTTTTTSCCCS
T ss_pred hhhhcccc---CCCCceEeeeHHHHHHHHHHHhhcCCCHHHHHHHHHHHhh--------hcCCCCCCCCCCccccccCCC
Confidence 89999999 999999 99999999999999999999999999999 5999999999999997 8889
Q ss_pred HHHHHHHHHHHHHH---HHHHHhc
Q psy16823 213 MKNYLTQVRQETGL---RVCERVF 233 (263)
Q Consensus 213 ~r~Yl~q~Rqe~~~---Rl~erv~ 233 (263)
-++..+++||++.+ ++..|+.
T Consensus 122 ~~~e~d~lR~Yl~QlRqEl~~RL~ 145 (178)
T 1k8k_E 122 NKQEDEVMRAYLQQLRQETGLRLC 145 (178)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999886 5666654
No 4
>3dwl_E Actin-related protein 2/3 complex subunit 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.82 E-value=2.8e-22 Score=172.31 Aligned_cols=83 Identities=19% Similarity=0.302 Sum_probs=25.4
Q ss_pred eeeeceeeeeccCCCcc-----eehhhHHHhhhccCCCcccchHHHHHHhhhhcCCCCCCCCCCCCCCCCCCCCc-hHHH
Q psy16823 139 VWVRDCKIMIRKNESSR-----IYVIRNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKPQSQN-EADL 212 (263)
Q Consensus 139 vfFrNfeI~~~KgpaDR-----ILFIsdCL~KL~k~~~k~EA~Kel~nlAL~NfalPgD~~FpLPG~~gFPLN~~-E~~~ 212 (263)
|||||||| |||||| ||||++||+||++| ++.||+|+++++|| ++|+|||++|||+|+- +...
T Consensus 55 vfFrnfeI---kg~ADR~LIYltlyi~~CLkkl~~~-sk~ea~k~l~~lal--------~~F~iPGd~gFpLn~~y~~P~ 122 (174)
T 3dwl_E 55 CFFRNFEI---KGPADRTLIYGTLFISECLGRVNGL-NYRDAERQLNSLAL--------ENFSIPGSAGFPLNALYAPPL 122 (174)
T ss_dssp TTCCCC--------CTHHHHHHHHHHHSCC------------CCCCC---------------------------------
T ss_pred hhhhcccc---CCCCceeeehHHHHHHHHHHHHhcc-CHHHHHHHHHHHHH--------hcCCCCCCCCCCccccccCCC
Confidence 89999999 999999 99999999999999 99999999999998 5999999999999999 7789
Q ss_pred HHHHHHHHHHHHHH---HHHHHhc
Q psy16823 213 MKNYLTQVRQETGL---RVCERVF 233 (263)
Q Consensus 213 ~r~Yl~q~Rqe~~~---Rl~erv~ 233 (263)
-++-.+++||++.+ ++..|+.
T Consensus 123 ~~~e~d~lR~Yl~QlRqEl~~RL~ 146 (174)
T 3dwl_E 123 SPQDAEIMRTYLTQFRQELAYRLL 146 (174)
T ss_dssp --------------CCGGGTTTTT
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999986 5555554
No 5
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=82.38 E-value=1.1 Score=30.21 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=24.2
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q psy16823 198 NSVYAKPQSQNEADLMKNYLTQVRQETGL 226 (263)
Q Consensus 198 PG~~gFPLN~~E~~~~r~Yl~q~Rqe~~~ 226 (263)
|..+..|-+.+..|.|++|.++||+++.+
T Consensus 2 P~kP~~Pg~~a~pEela~Y~~~Lr~Yinl 30 (37)
T 1f8p_A 2 PSKPDNPGEDAPAEDLARYYSALRHYINL 30 (37)
T ss_dssp CCCCCCCCSSCTTTTHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 55566777788889999999999999865
No 6
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=71.08 E-value=6 Score=26.62 Aligned_cols=29 Identities=10% Similarity=0.150 Sum_probs=24.6
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q psy16823 198 NSVYAKPQSQNEADLMKNYLTQVRQETGL 226 (263)
Q Consensus 198 PG~~gFPLN~~E~~~~r~Yl~q~Rqe~~~ 226 (263)
|..+..|-+.+-.|.|.+|...||+++.+
T Consensus 2 P~kP~~PG~dA~~Eela~Y~~~LrhYiNl 30 (36)
T 2bf9_A 2 PSQPTYPGDDAPVEDLIRFYNDLQQYLNV 30 (36)
T ss_dssp CCCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 55677788888889999999999999864
No 7
>2fok_A R.FOKI, FOKI restriction endonuclease; nucleic acid recognition, DNA-binding protein, type IIS restriction endonuclease; 2.30A {Planomicrobium okeanokoites} SCOP: a.4.5.12 a.4.5.12 a.4.5.12 c.52.1.12 PDB: 1fok_A*
Probab=66.29 E-value=3.3 Score=41.24 Aligned_cols=38 Identities=18% Similarity=0.492 Sum_probs=29.2
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeeeeccccc
Q psy16823 202 AKPQSQNEADLMKNYLTQVRQETGLRVCERVFNTPDGKPSKWWLCFSKK 250 (263)
Q Consensus 202 gFPLN~~E~~~~r~Yl~q~Rqe~~~Rl~erv~~~~~~~psKwWl~f~kr 250 (263)
||+++-..+|.|-.|+++-.+ .++.-.|+|||-+|...
T Consensus 474 GYsl~i~qaDeM~RYIeen~~-----------Rde~~nPnkWWe~f~~~ 511 (579)
T 2fok_A 474 GYNLPIGQADEMQRYVEENQT-----------RNKHINPNEWWKVYPSS 511 (579)
T ss_dssp CBCCCHHHHHHHHHHHHHHHH-----------CCTTTCTTCGGGGSCTT
T ss_pred CcCCchhhHHHHHHHHHhccc-----------cccccCchhhhhhcccc
Confidence 578888899999889987652 23456799999999753
No 8
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=65.73 E-value=6.5 Score=26.44 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=24.0
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q psy16823 198 NSVYAKPQSQNEADLMKNYLTQVRQETGL 226 (263)
Q Consensus 198 PG~~gFPLN~~E~~~~r~Yl~q~Rqe~~~ 226 (263)
|..+..|-+.+-.|.|.+|...||+++.+
T Consensus 2 P~kP~~PG~dA~pEela~Y~~~Lr~YiNl 30 (36)
T 1bba_A 2 PLEPEYPGDNATPEQMAQYAAELRRYINM 30 (36)
T ss_dssp CCCCCCCSSCSSTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 55667777777889999999999999864
No 9
>1qbf_A Peptide YY, PYY; PP-fold, pancreatic hormone, , inhibitor/hormone complex; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ru5_A 1ruu_A 2rlk_A 2oop_A 2dez_A 2df0_A
Probab=56.38 E-value=1.1 Score=30.27 Aligned_cols=29 Identities=14% Similarity=0.263 Sum_probs=23.7
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q psy16823 198 NSVYAKPQSQNEADLMKNYLTQVRQETGL 226 (263)
Q Consensus 198 PG~~gFPLN~~E~~~~r~Yl~q~Rqe~~~ 226 (263)
|..+..|-+.+..|.|++|.++||+++.+
T Consensus 2 P~kP~~Pg~da~pEela~Y~~~Lr~Yinl 30 (37)
T 1qbf_A 2 PAKPEAPGEDASPEELSRYYASLRHYLNL 30 (37)
T ss_dssp CCCCCCCCCSSSSSTTTTTTTGGGHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45566777777889999999999999764
No 10
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=48.08 E-value=9.2 Score=26.32 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=18.4
Q ss_pred CCCCchHHHHHHHHHHHHHHHHH
Q psy16823 204 PQSQNEADLMKNYLTQVRQETGL 226 (263)
Q Consensus 204 PLN~~E~~~~r~Yl~q~Rqe~~~ 226 (263)
|.+.+-.|.|++|..+||+++.+
T Consensus 12 Pg~~aspEela~Y~~~Lr~Yinl 34 (41)
T 2l60_A 12 ELKKLSPEELNRYYASLRHYLNL 34 (41)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Confidence 44455668999999999999864
No 11
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=20.88 E-value=58 Score=25.30 Aligned_cols=38 Identities=8% Similarity=0.085 Sum_probs=11.1
Q ss_pred CCCCCCCC-CCCCCCCCCCCc-hHHHHHHHHHHHHHHHHH
Q psy16823 189 LPGEAGFP-LNSVYAKPQSQN-EADLMKNYLTQVRQETGL 226 (263)
Q Consensus 189 lPgD~~Fp-LPG~~gFPLN~~-E~~~~r~Yl~q~Rqe~~~ 226 (263)
+||+.+.+ -+|++|-|..-. +-+.|.+-+++|++++..
T Consensus 2 ~~~~~g~~g~~g~~g~~~~~~~~l~~L~~~~~~L~~~l~~ 41 (168)
T 1buu_A 2 IEVSQGPKGQKGDRGDSRAIEVKLANMEAEINTLKSKLEL 41 (168)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 45554444 466666552221 334445677777777643
Done!