RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16823
(263 letters)
>gnl|CDD|217867 pfam04062, P21-Arc, ARP2/3 complex ARPC3 (21 kDa) subunit. The
seven component ARP2/3 actin-organising complex is
involved in actin assembly and function.
Length = 175
Score = 216 bits (553), Expect = 2e-71
Identities = 72/124 (58%), Positives = 94/124 (75%), Gaps = 2/124 (1%)
Query: 1 MPAYHSTLTDF--NQCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTY 58
MPAYHST D + VGN+A+LP++T++RGPAP + + DII+EAL F+ANVFFR +
Sbjct: 1 MPAYHSTFLDEPSVRLVGNMALLPLRTKFRGPAPTPDSEDYDIIDEALDLFRANVFFRNF 60
Query: 59 EIKSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYA 118
EIK ADR+LIY LYI+ECLKKLQKC +K + + E+ +LAL F +PG+ GFPLNS+YA
Sbjct: 61 EIKGPADRVLIYGILYISECLKKLQKCMSKREAEKELNNLALDNFAIPGDPGFPLNSLYA 120
Query: 119 KPQN 122
P N
Sbjct: 121 PPAN 124
Score = 183 bits (466), Expect = 2e-58
Identities = 60/113 (53%), Positives = 82/113 (72%), Gaps = 5/113 (4%)
Query: 150 KNESSR--IYV---IRNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKP 204
K + R IY I CLKKLQKC +K + + E+ +LAL F +PG+ GFPLNS+YA P
Sbjct: 63 KGPADRVLIYGILYISECLKKLQKCMSKREAEKELNNLALDNFAIPGDPGFPLNSLYAPP 122
Query: 205 QSQNEADLMKNYLTQVRQETGLRVCERVFNTPDGKPSKWWLCFSKKRFMDKSL 257
++ EA+L++ YL Q+RQE +R+ ERV+ DGKPSKWWLCF+K++FM+KSL
Sbjct: 123 ANRQEAELLRQYLQQLRQELAIRLLERVYADEDGKPSKWWLCFTKRKFMNKSL 175
>gnl|CDD|217459 pfam03258, Baculo_FP, Baculovirus FP protein. The FP protein is
missing in baculovirus (Few Polyhedra) mutants.
Length = 214
Score = 35.1 bits (81), Expect = 0.020
Identities = 13/28 (46%), Positives = 22/28 (78%), Gaps = 4/28 (14%)
Query: 136 YKFVWVRDCK--IMIRKNESSRIYVIRN 161
YK+V + CK +M+R+NE S+IY+++N
Sbjct: 152 YKYVSL--CKNGVMVRRNEKSKIYIVKN 177
>gnl|CDD|234165 TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT
protein. Members of this protein family are the YaeT
protein of the YaeT/YfiO complex for assembling proteins
into the outer membrane of Gram-negative bacteria. This
protein is similar in sequence and function to a
non-essential paralog, YtfM, that is also in the Omp85
family. Members of this family typically have five
tandem copies of the surface antigen variable number
repeat (pfam07244), followed by an outer membrane
beta-barrel domain (pfam01103), while the YtfM family
typically has a single pfam07244 repeat [Protein fate,
Protein and peptide secretion and trafficking].
Length = 741
Score = 29.5 bits (67), Expect = 2.4
Identities = 36/148 (24%), Positives = 57/148 (38%), Gaps = 52/148 (35%)
Query: 69 IYITLYITE-----------------CLKKLQK-CPTKAQGQNEMYSLALAKF------D 104
+YIT I E ++L+K K + E+++ + D
Sbjct: 229 VYITYNIKEGEQYKFGEVTIEGDLIGPDEELKKLLKIK---KGEVFNRSKVTKIVKAIKD 285
Query: 105 LPGEAGFPLNSVYAKPQ--------NLLFKAKKLKEANGYKFVWVRDCKIMIRKNESSRI 156
L GE G+ +V +PQ +L FK G + V+VR +I I N +R
Sbjct: 286 LLGEKGYAFANVNPRPQINDENKTVDLTFKVDP-----GKR-VYVR--RINISGNTRTRD 337
Query: 157 YVIRNCLKKLQKCPTKAQGQNEMYSLAL 184
VIR L+ Q + + YSL+
Sbjct: 338 EVIRRELR---------QLEGDWYSLSK 356
>gnl|CDD|131884 TIGR02837, spore_II_R, stage II sporulation protein R. A
comparative genome analysis of all sequenced genomes of
shows a number of proteins conserved strictly among the
endospore-forming subset of the Firmicutes. This
protein, a member of this panel, is designated stage II
sporulation protein R [Cellular processes, Sporulation
and germination].
Length = 168
Score = 27.8 bits (62), Expect = 3.7
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 10/81 (12%)
Query: 114 NSVYAKPQNLLFKAKKLKEANGYKFVWVRDCKIMIRKNESSRIYVIRNCLKKLQKCP--- 170
NS + Q L K K W+ K E+ R VIR L ++++
Sbjct: 47 NSDSDEDQAL--KLKVRDAVLKEIRPWLSGLK---SLEEARR--VIRENLPEIERIAESV 99
Query: 171 TKAQGQNEMYSLALAKFDLPG 191
KA+G + + L K+ P
Sbjct: 100 IKAEGADYKVRVELGKYSFPT 120
>gnl|CDD|218827 pfam05960, DUF885, Bacterial protein of unknown function (DUF885).
This family consists of several hypothetical bacterial
proteins several of which are putative membrane
proteins.
Length = 539
Score = 28.5 bits (64), Expect = 3.9
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 43 EEALYYFKANVFFRTYEIKSEADR 66
E+A+ Y N E ++E DR
Sbjct: 455 EQAIDYLVENTGLSEGEAEAEVDR 478
>gnl|CDD|222424 pfam13862, BCIP, p21-C-terminal region-binding protein. This
family of p21-binding proteins is important as a
modulator of p21 activity. The domain binds the
C-terminal region of p21 in a ternary complex with CDK2,
which results in inhibition of the kinase activity of
CDK2.
Length = 189
Score = 27.5 bits (62), Expect = 5.5
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 202 AKPQSQNEADLMKNYLTQVRQETGLRVCERVFNTP 236
K + ++ L+ ++ GL + ER N P
Sbjct: 92 KKSADKEVLAKLEKLLSDSDKKVGLLINERFINMP 126
>gnl|CDD|222783 PHA00350, PHA00350, putative assembly protein.
Length = 399
Score = 27.5 bits (61), Expect = 8.1
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 132 EANGYKFVWVRDCKIMIRKNESSRIYVIRNCLKKLQKCPTKAQ 174
E GY+F + DC + +SR+ C+ + + KAQ
Sbjct: 349 EKMGYQFEALDDCVYRLTWESNSRVV---TCIPRSRFAQQKAQ 388
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.408
Gapped
Lambda K H
0.267 0.0793 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,955,087
Number of extensions: 1175648
Number of successful extensions: 782
Number of sequences better than 10.0: 1
Number of HSP's gapped: 781
Number of HSP's successfully gapped: 8
Length of query: 263
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 168
Effective length of database: 6,723,972
Effective search space: 1129627296
Effective search space used: 1129627296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)