RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16823
         (263 letters)



>d1k8ke_ a.148.1.1 (E:) Arp2/3 complex 21 kDa subunit ARPC3 {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 174

 Score =  195 bits (497), Expect = 1e-63
 Identities = 78/122 (63%), Positives = 104/122 (85%), Gaps = 2/122 (1%)

Query: 2   PAYHSTLTDFN-QCVGNIAMLPIKTQYRGPAPQFTTGEQDIIEEALYYFKANVFFRTYEI 60
           PAYHS+L D + + +GN+A+LPI++Q++GPAP+  T + DI++EA+YYFKANVFF+ YEI
Sbjct: 1   PAYHSSLMDPDTKLIGNMALLPIRSQFKGPAPR-ETKDTDIVDEAIYYFKANVFFKNYEI 59

Query: 61  KSEADRLLIYITLYITECLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKP 120
           K+EADR LIYITLYI+ECLKKLQKC +K+QG+ EMY+L +  F +PGE GFPLN++YAKP
Sbjct: 60  KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 119

Query: 121 QN 122
            N
Sbjct: 120 AN 121



 Score =  171 bits (434), Expect = 3e-54
 Identities = 65/114 (57%), Positives = 89/114 (78%), Gaps = 5/114 (4%)

Query: 150 KNESSR--IYV---IRNCLKKLQKCPTKAQGQNEMYSLALAKFDLPGEAGFPLNSVYAKP 204
           KNE+ R  IY+   I  CLKKLQKC +K+QG+ EMY+L +  F +PGE GFPLN++YAKP
Sbjct: 60  KNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKP 119

Query: 205 QSQNEADLMKNYLTQVRQETGLRVCERVFNTPDGKPSKWWLCFSKKRFMDKSLT 258
            ++ E ++M+ YL Q+RQETGLR+CE+VF+  + KPSKWW CF K++FM+KSL+
Sbjct: 120 ANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLS 173


>d2gcxa1 b.34.1.2 (A:1-75) Ferrous iron transport protein A, FeoA
           {Klebsiella pneumoniae [TaxId: 573]}
          Length = 75

 Score = 26.6 bits (59), Expect = 0.95
 Identities = 4/20 (20%), Positives = 11/20 (55%)

Query: 139 VWVRDCKIMIRKNESSRIYV 158
           +  R   +++RK + + I +
Sbjct: 51  IETRRVSLVLRKKDLALIEL 70


>d2h3ja1 b.34.1.2 (A:1-75) Hypothetical protein PA4359 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 75

 Score = 26.6 bits (59), Expect = 0.98
 Identities = 3/20 (15%), Positives = 10/20 (50%)

Query: 139 VWVRDCKIMIRKNESSRIYV 158
           V  R   + +R+ + + + +
Sbjct: 52  VETRQTSLALRRKDLALLTL 71


>d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal
           domain {Thermoanaerobacterium thermosaccharolyticum
           [TaxId: 1517]}
          Length = 397

 Score = 27.4 bits (60), Expect = 1.9
 Identities = 7/29 (24%), Positives = 10/29 (34%)

Query: 115 SVYAKPQNLLFKAKKLKEANGYKFVWVRD 143
           +  A         ++     GY  VW RD
Sbjct: 29  AYIASLSIPWGDGQRDDNTGGYHLVWSRD 57


>d1s55a1 b.22.1.1 (A:161-316) TRANCE/RANKL cytokine {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 156

 Score = 26.1 bits (57), Expect = 3.2
 Identities = 9/44 (20%), Positives = 20/44 (45%)

Query: 33 QFTTGEQDIIEEALYYFKANVFFRTYEIKSEADRLLIYITLYIT 76
            + G+  + ++  YY  AN+ FR +E         + + +Y+ 
Sbjct: 39 TLSNGKLRVNQDGFYYLYANICFRHHETSGSVPTDYLQLMVYVV 82


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0704    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 957,533
Number of extensions: 42717
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 7
Length of query: 263
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 179
Effective length of database: 1,254,276
Effective search space: 224515404
Effective search space used: 224515404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.9 bits)