BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16824
(85 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9JM76|ARPC3_MOUSE Actin-related protein 2/3 complex subunit 3 OS=Mus musculus
GN=Arpc3 PE=1 SV=3
Length = 178
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 49/84 (58%), Positives = 66/84 (78%)
Query: 1 MYSLALAKFDLPGEAGFPLNSVYAKPQSQNEADLMKNYLTQVRQETGLRVCERVFNTPDG 60
MY+L + F +PGE GFPLN++YAKP S+ E ++M+ YL Q+RQETGLR+CE+VF+
Sbjct: 95 MYTLGITNFPIPGEPGFPLNAIYAKPASKQEDEMMRAYLQQLRQETGLRLCEKVFDPQSD 154
Query: 61 KPSKWWLCFSKKRFMDKSLTALGQ 84
KPSKWW CF K++FM+KSL+ GQ
Sbjct: 155 KPSKWWTCFVKRQFMNKSLSGPGQ 178
>sp|O15145|ARPC3_HUMAN Actin-related protein 2/3 complex subunit 3 OS=Homo sapiens
GN=ARPC3 PE=1 SV=3
Length = 178
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 48/84 (57%), Positives = 67/84 (79%)
Query: 1 MYSLALAKFDLPGEAGFPLNSVYAKPQSQNEADLMKNYLTQVRQETGLRVCERVFNTPDG 60
MY+L + F +PGE GFPLN++YAKP ++ E ++M+ YL Q+RQETGLR+CE+VF+ +
Sbjct: 95 MYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQND 154
Query: 61 KPSKWWLCFSKKRFMDKSLTALGQ 84
KPSKWW CF K++FM+KSL+ GQ
Sbjct: 155 KPSKWWTCFVKRQFMNKSLSGPGQ 178
>sp|Q3T035|ARPC3_BOVIN Actin-related protein 2/3 complex subunit 3 OS=Bos taurus GN=ARPC3
PE=1 SV=3
Length = 178
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 48/84 (57%), Positives = 67/84 (79%)
Query: 1 MYSLALAKFDLPGEAGFPLNSVYAKPQSQNEADLMKNYLTQVRQETGLRVCERVFNTPDG 60
MY+L + F +PGE GFPLN++YAKP ++ E ++M+ YL Q+RQETGLR+CE+VF+ +
Sbjct: 95 MYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQND 154
Query: 61 KPSKWWLCFSKKRFMDKSLTALGQ 84
KPSKWW CF K++FM+KSL+ GQ
Sbjct: 155 KPSKWWTCFVKRQFMNKSLSGPGQ 178
>sp|Q9XWV3|ARPC3_CAEEL Probable actin-related protein 2/3 complex subunit 3
OS=Caenorhabditis elegans GN=arx-5 PE=3 SV=1
Length = 183
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 53/73 (72%)
Query: 11 LPGEAGFPLNSVYAKPQSQNEADLMKNYLTQVRQETGLRVCERVFNTPDGKPSKWWLCFS 70
+PGE GFPLNS+Y PQS+ + D M+ YL Q+RQE G R+C+ F P +PSKWWLCF+
Sbjct: 108 IPGENGFPLNSMYKAPQSKPDEDEMRAYLQQIRQEIGARLCDLAFPDPQDRPSKWWLCFA 167
Query: 71 KKRFMDKSLTALG 83
++RFMDK L G
Sbjct: 168 RRRFMDKGLVGQG 180
>sp|Q9Y7J4|ARPC3_SCHPO Actin-related protein 2/3 complex subunit 3 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=arc3 PE=1 SV=1
Length = 174
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 55/77 (71%)
Query: 3 SLALAKFDLPGEAGFPLNSVYAKPQSQNEADLMKNYLTQVRQETGLRVCERVFNTPDGKP 62
SLAL F +PG AGFPLN++YA P S +A++M+ YLTQ RQE R+ V+ T P
Sbjct: 98 SLALENFSIPGSAGFPLNALYAPPLSPQDAEIMRTYLTQFRQELAYRLLSHVYATEKDHP 157
Query: 63 SKWWLCFSKKRFMDKSL 79
SKWW CFSK+RFM+K+L
Sbjct: 158 SKWWTCFSKRRFMNKAL 174
>sp|Q05933|ARPC3_YEAST Actin-related protein 2/3 complex subunit 3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ARC18 PE=1
SV=1
Length = 178
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 57/80 (71%), Gaps = 3/80 (3%)
Query: 3 SLALAKFDLPGEAGFPLNSVYAKP-QSQNEADLMKNYLTQVRQETGLRVCERVFNTPDGK 61
++AL F LPG GFPLN+VY P Q N DL+K Y+ Q RQE +R+ ERV+++ D K
Sbjct: 99 NVALDNFTLPGTPGFPLNNVYQVPVQDHNSMDLLKTYIQQFRQELAMRLLERVYSSTDSK 158
Query: 62 --PSKWWLCFSKKRFMDKSL 79
PSK+WL F+++RFM+KSL
Sbjct: 159 EYPSKFWLAFTRRRFMNKSL 178
>sp|O96624|ARPC3_DICDI Actin-related protein 2/3 complex subunit 3 OS=Dictyostelium
discoideum GN=arcC PE=1 SV=1
Length = 174
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 56/79 (70%)
Query: 1 MYSLALAKFDLPGEAGFPLNSVYAKPQSQNEADLMKNYLTQVRQETGLRVCERVFNTPDG 60
++ +A +F +PGE+ FPL + P +++ AD ++ Y TQ+R E G+R+C+RV+
Sbjct: 96 LFLIAQEQFSIPGESAFPLGGLVTVPNTRDAADTLRQYFTQLRLELGVRLCQRVYAVDPS 155
Query: 61 KPSKWWLCFSKKRFMDKSL 79
K +KWW+CFSK++F++K+L
Sbjct: 156 KANKWWICFSKRKFLNKAL 174
>sp|Q8WYK1|CNTP5_HUMAN Contactin-associated protein-like 5 OS=Homo sapiens GN=CNTNAP5 PE=2
SV=1
Length = 1306
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 53 RVFNTPDGKPSKWWLCFSKKR 73
R+ NTPDG P WW+ S +R
Sbjct: 686 RLLNTPDGTPFTWWIGRSNER 706
>sp|Q0V8T9|CTP5A_MOUSE Contactin-associated protein like 5-1 OS=Mus musculus GN=Cntnap5a
PE=2 SV=1
Length = 1304
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 53 RVFNTPDGKPSKWWLCFSKKR 73
R+ NTPDG P WW+ S +R
Sbjct: 686 RLLNTPDGAPFTWWIGRSTER 706
>sp|Q0V8T4|CTP5C_RAT Contactin-associated protein like 5-3 OS=Rattus norvegicus
GN=Cntnap5c PE=2 SV=1
Length = 1307
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 53 RVFNTPDGKPSKWWLCFSKKR 73
R+ NTPDG P WW+ S ++
Sbjct: 688 RLLNTPDGAPFTWWIGRSNEK 708
>sp|Q0V8T0|CNTP5_CANFA Contactin-associated protein-like 5 OS=Canis familiaris GN=CNTNAP5
PE=2 SV=1
Length = 1305
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 53 RVFNTPDGKPSKWWLCFSKKR 73
R+ NTPDG P WW+ S ++
Sbjct: 686 RLLNTPDGTPFTWWIGRSNEK 706
>sp|Q9CPW0|CNTP2_MOUSE Contactin-associated protein-like 2 OS=Mus musculus GN=Cntnap2 PE=1
SV=2
Length = 1332
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 53 RVFNTPDGKPSKWWL 67
R+ NTPDG P WW+
Sbjct: 694 RLLNTPDGSPYTWWV 708
>sp|Q5RD64|CNTP2_PONAB Contactin-associated protein-like 2 OS=Pongo abelii GN=CNTNAP2 PE=2
SV=1
Length = 1331
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 53 RVFNTPDGKPSKWWL 67
R+ NTPDG P WW+
Sbjct: 694 RLLNTPDGSPYTWWV 708
>sp|Q9UHC6|CNTP2_HUMAN Contactin-associated protein-like 2 OS=Homo sapiens GN=CNTNAP2 PE=1
SV=1
Length = 1331
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 53 RVFNTPDGKPSKWWL 67
R+ NTPDG P WW+
Sbjct: 694 RLLNTPDGSPYTWWV 708
>sp|Q0V8T7|CTP5C_MOUSE Contactin-associated protein like 5-3 OS=Mus musculus GN=Cntnap5c
PE=2 SV=1
Length = 1305
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 53 RVFNTPDGKPSKWWLCFSKKR 73
R+ NTPDG P WW+ S ++
Sbjct: 686 RLLNTPDGVPFTWWIGRSNEK 706
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,143,879
Number of Sequences: 539616
Number of extensions: 1081459
Number of successful extensions: 1752
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1734
Number of HSP's gapped (non-prelim): 16
length of query: 85
length of database: 191,569,459
effective HSP length: 56
effective length of query: 29
effective length of database: 161,350,963
effective search space: 4679177927
effective search space used: 4679177927
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)