Query psy16824
Match_columns 85
No_of_seqs 106 out of 153
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 22:59:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16824.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16824hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1k8k_E P21, ARP2/3 complex 21 100.0 3.5E-52 1.2E-56 304.3 6.8 84 1-84 95-178 (178)
2 3dwl_E Actin-related protein 2 100.0 9.1E-49 3.1E-53 285.4 -2.0 79 1-79 96-174 (174)
3 2fok_A R.FOKI, FOKI restrictio 83.2 0.84 2.9E-05 38.1 3.3 32 29-71 479-510 (579)
4 1f8p_A Neuropeptide Y (PNPY); 77.6 0.74 2.5E-05 25.8 0.9 22 26-47 8-29 (37)
5 2l60_A Peptide YY; GPCR ligand 69.6 1.5 5.2E-05 25.0 0.9 21 27-47 13-33 (41)
6 2l2l_A Transcriptional repress 57.7 8.8 0.0003 22.0 2.6 18 28-48 2-19 (43)
7 1buu_A Protein (mannose-bindin 53.5 13 0.00043 24.3 3.3 37 10-46 1-39 (168)
8 2bf9_A Pancreatic hormone; tur 53.4 10 0.00035 21.0 2.3 22 26-47 8-29 (36)
9 2pco_A Latarcin-1, LTC-1; cont 50.5 5.5 0.00019 20.7 0.8 19 33-51 5-23 (26)
10 3r6f_A HIT family protein; str 49.8 19 0.00066 23.1 3.7 32 12-47 103-134 (135)
11 3ksv_A Uncharacterized protein 45.0 27 0.00093 23.0 3.9 32 12-47 116-147 (149)
12 1bba_A Bovine pancreatic polyp 39.6 12 0.00041 20.7 1.2 22 26-47 8-29 (36)
13 1qbf_A Peptide YY, PYY; PP-fol 37.9 0.77 2.6E-05 25.8 -3.9 22 26-47 8-29 (37)
14 4fm3_A Uncharacterized hypothe 33.9 27 0.00094 22.8 2.4 20 30-49 78-97 (98)
15 1hyw_A GPW, head-TO-tail joini 31.6 27 0.00092 21.2 2.0 19 30-48 38-56 (68)
16 1got_G GT-gamma; complex (GTP- 31.2 28 0.00097 21.4 2.1 22 27-48 14-35 (73)
17 3ohe_A Histidine triad (HIT) p 30.9 75 0.0026 20.6 4.3 35 12-47 99-134 (137)
18 1q90_R Cytochrome B6-F complex 30.8 6 0.0002 22.9 -1.1 12 69-80 9-20 (49)
19 3mn2_A Probable ARAC family tr 30.7 45 0.0016 19.8 3.0 19 34-52 46-64 (108)
20 1k8v_A Neuropeptide F; moniezi 30.4 35 0.0012 19.2 2.2 15 33-47 18-32 (40)
21 2k9s_A Arabinose operon regula 29.4 49 0.0017 19.7 3.0 19 34-52 48-66 (107)
22 3mix_A Flagellar biosynthesis 29.3 42 0.0014 26.1 3.2 43 10-53 134-201 (382)
23 3i4s_A Histidine triad protein 29.0 76 0.0026 21.1 4.1 35 12-47 104-139 (149)
24 3l34_A Sensor protein; two-com 28.8 29 0.00099 23.8 2.0 16 40-55 19-34 (130)
25 1z0j_B FYVE-finger-containing 28.8 41 0.0014 20.2 2.4 16 30-45 16-31 (59)
26 3oio_A Transcriptional regulat 28.6 55 0.0019 19.6 3.1 19 35-53 52-70 (113)
27 3o65_A Putative ataxin-3-like 28.4 9.4 0.00032 27.5 -0.6 28 17-45 132-159 (191)
28 3bei_A Prothrombin; serine pro 28.1 24 0.00083 20.2 1.3 29 13-41 13-43 (44)
29 2ou6_A Hypothetical protein; s 28.1 88 0.003 20.1 4.2 36 17-54 20-55 (190)
30 1xt8_A Putative amino-acid tra 27.8 34 0.0012 23.0 2.2 46 25-70 233-280 (292)
31 2oik_A Histidine triad (HIT) p 27.1 27 0.00093 22.7 1.6 15 35-49 129-143 (154)
32 1wdn_A GLNBP, glutamine bindin 26.8 98 0.0034 19.1 4.1 31 27-57 192-223 (226)
33 3lsg_A Two-component response 26.7 59 0.002 19.1 3.0 20 34-53 47-66 (103)
34 1yzm_A FYVE-finger-containing 26.1 50 0.0017 19.2 2.4 16 30-45 9-24 (51)
35 3i24_A HIT family hydrolase; s 26.0 87 0.003 20.8 4.0 35 12-47 99-134 (149)
36 3myd_A Flagellar biosynthesis 25.7 34 0.0012 26.5 2.1 45 9-54 115-184 (365)
37 3nrd_A Histidine triad (HIT) p 25.5 70 0.0024 20.6 3.4 33 12-45 101-134 (135)
38 3oou_A LIN2118 protein; protei 25.4 64 0.0022 19.2 3.0 19 34-52 49-67 (108)
39 3cw1_L U1 small nuclear ribonu 25.2 1E+02 0.0035 19.1 3.9 26 30-55 29-54 (77)
40 3i6v_A Periplasmic His/Glu/Gln 25.0 1.2E+02 0.0042 19.4 4.5 34 26-59 186-220 (232)
41 3djb_A Hydrolase, HD family; a 24.8 33 0.0011 24.3 1.7 21 33-53 198-218 (223)
42 3hhg_A Transcriptional regulat 24.7 18 0.00061 24.1 0.3 20 34-53 33-52 (306)
43 1bl0_A Protein (multiple antib 24.4 66 0.0022 19.9 3.0 19 34-52 55-73 (129)
44 3mkl_A HTH-type transcriptiona 24.4 60 0.0021 19.7 2.8 19 34-52 50-68 (120)
45 1ixc_A CBNR, LYSR-type regulat 24.1 21 0.0007 23.7 0.5 21 34-54 31-51 (294)
46 1z0k_B FYVE-finger-containing 23.8 56 0.0019 20.1 2.4 16 30-45 27-42 (69)
47 3dto_A BH2835 protein; all alp 23.1 36 0.0012 24.1 1.7 21 33-53 198-218 (223)
48 3imi_A HIT family protein; str 22.8 37 0.0013 22.0 1.6 33 12-46 114-146 (147)
49 1pya_B Pyruvoyl-dependent hist 22.8 89 0.0031 23.3 3.8 26 27-53 122-147 (229)
50 2pjq_A Uncharacterized protein 22.8 59 0.002 22.6 2.7 15 33-47 204-218 (231)
51 4fxw_B Splicing factor 1; UHM, 22.6 55 0.0019 22.1 2.4 21 32-52 38-58 (124)
52 3kz3_A Repressor protein CI; f 22.2 32 0.0011 19.4 1.0 19 29-47 7-25 (80)
53 1a7t_A Metallo-beta-lactamase; 21.7 68 0.0023 21.3 2.8 20 28-47 211-230 (232)
54 1prx_A HORF6; peroxiredoxin, h 21.6 19 0.00064 24.9 -0.1 10 62-71 212-222 (224)
55 3h7m_A Sensor protein; histidi 21.3 1.4E+02 0.0047 18.5 4.0 31 26-56 199-230 (234)
56 3mz1_A Putative transcriptiona 21.3 20 0.00068 23.5 0.0 20 35-54 29-48 (300)
57 2pq7_A Predicted HD superfamil 20.6 67 0.0023 21.8 2.6 14 33-46 204-217 (220)
58 4f9k_A CAMP-dependent protein 20.5 66 0.0023 21.0 2.4 28 22-51 61-88 (95)
59 1pwb_A SP-D, PSP-D, pulmonary 20.3 57 0.002 21.1 2.1 15 33-47 34-48 (177)
60 1etr_L Epsilon-thrombin; serin 20.2 47 0.0016 19.4 1.5 28 13-40 18-47 (49)
61 3fxq_A LYSR type regulator of 20.2 23 0.00077 23.9 0.1 20 34-53 32-51 (305)
62 3mv2_A Coatomer subunit alpha; 20.1 91 0.0031 24.0 3.5 24 27-50 150-180 (325)
No 1
>1k8k_E P21, ARP2/3 complex 21 kDa subunit, P21-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.148.1.1 PDB: 1tyq_E* 1u2v_E* 2p9i_E* 2p9k_E* 2p9l_E 2p9n_E* 2p9p_E* 2p9s_E* 2p9u_E* 3dxk_E* 3dxm_E* 3rse_E
Probab=100.00 E-value=3.5e-52 Score=304.26 Aligned_cols=84 Identities=57% Similarity=1.192 Sum_probs=78.6
Q ss_pred CccccccCcCCCCCCCCCCcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCChhhhhhccchhhhhccc
Q psy16824 1 MYSLALAKFDLPGEAGFPLNSVYAKPQSQNEADLMKNYLTQVRQETGLRVCERVFNTPDGKPSKWWLCFSKKRFMDKSLT 80 (85)
Q Consensus 1 l~~lal~~F~iPGd~gFpLn~~y~~P~~~~E~d~lr~Yl~QlRqE~~~RL~e~vy~~~~~~psKwWm~F~KRkFM~KsLs 80 (85)
|+++|+++|+||||+|||||++|++|+|++|+|+||+||+|+|||+|.|||||||++++++||||||||+||||||||||
T Consensus 95 l~~lal~~F~iPGd~gFpLn~~y~~P~~~~e~d~lR~Yl~QlRqEl~~RL~ervf~~~~~~psKwWl~FaKRkFM~ksls 174 (178)
T 1k8k_E 95 MYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMNKSLS 174 (178)
T ss_dssp HHHHHHSCCCCTTSTTCTTTTTSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSSSCBCHHHHTTTTCCGGGCCCC
T ss_pred HHHHhhhcCCCCCCCCCCccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccceeehhhhhhccccC
Confidence 57999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred CCCC
Q psy16824 81 ALGQ 84 (85)
Q Consensus 81 ~pg~ 84 (85)
|||+
T Consensus 175 ~pg~ 178 (178)
T 1k8k_E 175 GPGQ 178 (178)
T ss_dssp ----
T ss_pred CCCC
Confidence 9997
No 2
>3dwl_E Actin-related protein 2/3 complex subunit 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.1e-49 Score=285.43 Aligned_cols=79 Identities=54% Similarity=1.045 Sum_probs=26.6
Q ss_pred CccccccCcCCCCCCCCCCcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCChhhhhhccchhhhhcc
Q psy16824 1 MYSLALAKFDLPGEAGFPLNSVYAKPQSQNEADLMKNYLTQVRQETGLRVCERVFNTPDGKPSKWWLCFSKKRFMDKSL 79 (85)
Q Consensus 1 l~~lal~~F~iPGd~gFpLn~~y~~P~~~~E~d~lr~Yl~QlRqE~~~RL~e~vy~~~~~~psKwWm~F~KRkFM~KsL 79 (85)
|+++|+++|+||||+|||||++|++|+|++|+|+||+||+|+|||+|.|||||||++++++||||||||+|||||||||
T Consensus 96 l~~lal~~F~iPGd~gFpLn~~y~~P~~~~e~d~lR~Yl~QlRqEl~~RL~ervf~~~~~kpsKwWl~F~KRkFM~ksL 174 (174)
T 3dwl_E 96 LNSLALENFSIPGSAGFPLNALYAPPLSPQDAEIMRTYLTQFRQELAYRLLSHVYATEKDHPSKWWTCFSKRRFMNKAL 174 (174)
T ss_dssp CC---------------------------------------CCGGGTTTTTC-----------CTTSGGGGCCGGGC--
T ss_pred HHHHHHhcCCCCCCCCCCccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHhhhcccC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999997
No 3
>2fok_A R.FOKI, FOKI restriction endonuclease; nucleic acid recognition, DNA-binding protein, type IIS restriction endonuclease; 2.30A {Planomicrobium okeanokoites} SCOP: a.4.5.12 a.4.5.12 a.4.5.12 c.52.1.12 PDB: 1fok_A*
Probab=83.23 E-value=0.84 Score=38.14 Aligned_cols=32 Identities=22% Similarity=0.621 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCChhhhhhcc
Q psy16824 29 QNEADLMKNYLTQVRQETGLRVCERVFNTPDGKPSKWWLCFSK 71 (85)
Q Consensus 29 ~~E~d~lr~Yl~QlRqE~~~RL~e~vy~~~~~~psKwWm~F~K 71 (85)
-..+|.|--|+.+..+ .++.-.|||||-||-.
T Consensus 479 i~qaDeM~RYIeen~~-----------Rde~~nPnkWWe~f~~ 510 (579)
T 2fok_A 479 IGQADEMQRYVEENQT-----------RNKHINPNEWWKVYPS 510 (579)
T ss_dssp HHHHHHHHHHHHHHHH-----------CCTTTCTTCGGGGSCT
T ss_pred hhhHHHHHHHHHhccc-----------cccccCchhhhhhccc
Confidence 3445555559887652 2344579999999964
No 4
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=77.55 E-value=0.74 Score=25.81 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=17.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHH
Q psy16824 26 PQSQNEADLMKNYLTQVRQETG 47 (85)
Q Consensus 26 P~~~~E~d~lr~Yl~QlRqE~~ 47 (85)
|++....|.|++|+++||+=+.
T Consensus 8 Pg~~a~pEela~Y~~~Lr~Yin 29 (37)
T 1f8p_A 8 PGEDAPAEDLARYYSALRHYIN 29 (37)
T ss_dssp CCSSCTTTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
Confidence 4556666889999999998664
No 5
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=69.60 E-value=1.5 Score=25.04 Aligned_cols=21 Identities=10% Similarity=0.224 Sum_probs=16.3
Q ss_pred CChhHHHHHHHHHHHHHHHHH
Q psy16824 27 QSQNEADLMKNYLTQVRQETG 47 (85)
Q Consensus 27 ~~~~E~d~lr~Yl~QlRqE~~ 47 (85)
++.+-.|.|++|+.+||+=+.
T Consensus 13 g~~aspEela~Y~~~Lr~Yin 33 (41)
T 2l60_A 13 LKKLSPEELNRYYASLRHYLN 33 (41)
T ss_dssp HTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 444556899999999998654
No 6
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=57.72 E-value=8.8 Score=22.00 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=11.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHH
Q psy16824 28 SQNEADLMKNYLTQVRQETGL 48 (85)
Q Consensus 28 ~~~E~d~lr~Yl~QlRqE~~~ 48 (85)
+.+|.|.+ ++|||+||-.
T Consensus 2 s~~ere~~---i~~LreeLR~ 19 (43)
T 2l2l_A 2 SPEERERM---IKQLKEELRL 19 (43)
T ss_dssp CHHHHHHH---HHHHHHHHHH
T ss_pred CHHHHHHH---HHHHHHHHHH
Confidence 34555544 8889988854
No 7
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=53.51 E-value=13 Score=24.33 Aligned_cols=37 Identities=5% Similarity=0.060 Sum_probs=11.7
Q ss_pred CCCCCCCCC-CcccccCCCC-hhHHHHHHHHHHHHHHHH
Q psy16824 10 DLPGEAGFP-LNSVYAKPQS-QNEADLMKNYLTQVRQET 46 (85)
Q Consensus 10 ~iPGd~gFp-Ln~~y~~P~~-~~E~d~lr~Yl~QlRqE~ 46 (85)
+|||++|-+ -++-...|+. ..+-+.|..-+++|++++
T Consensus 1 ~~~~~~g~~g~~g~~g~~~~~~~~l~~L~~~~~~L~~~l 39 (168)
T 1buu_A 1 AIEVSQGPKGQKGDRGDSRAIEVKLANMEAEINTLKSKL 39 (168)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 366666665 4443333422 223355557788888877
No 8
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=53.38 E-value=10 Score=21.01 Aligned_cols=22 Identities=9% Similarity=0.243 Sum_probs=17.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHH
Q psy16824 26 PQSQNEADLMKNYLTQVRQETG 47 (85)
Q Consensus 26 P~~~~E~d~lr~Yl~QlRqE~~ 47 (85)
|++..-.|.|.+|...||+=+.
T Consensus 8 PG~dA~~Eela~Y~~~LrhYiN 29 (36)
T 2bf9_A 8 PGDDAPVEDLIRFYNDLQQYLN 29 (36)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
Confidence 4556666999999999998654
No 9
>2pco_A Latarcin-1, LTC-1; continuous helix, toxin; NMR {Synthetic}
Probab=50.54 E-value=5.5 Score=20.73 Aligned_cols=19 Identities=11% Similarity=0.226 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy16824 33 DLMKNYLTQVRQETGLRVC 51 (85)
Q Consensus 33 d~lr~Yl~QlRqE~~~RL~ 51 (85)
+.||.||+.+|+-+-.|+-
T Consensus 5 gk~keklKkf~~~lk~k~~ 23 (26)
T 2pco_A 5 GMWRRKLKKLRNALKKKLK 23 (26)
T ss_dssp SCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3589999999999877753
No 10
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi}
Probab=49.81 E-value=19 Score=23.07 Aligned_cols=32 Identities=6% Similarity=0.169 Sum_probs=20.9
Q ss_pred CCCCCCCCcccccCCCChhHHHHHHHHHHHHHHHHH
Q psy16824 12 PGEAGFPLNSVYAKPQSQNEADLMKNYLTQVRQETG 47 (85)
Q Consensus 12 PGd~gFpLn~~y~~P~~~~E~d~lr~Yl~QlRqE~~ 47 (85)
.||.||++. +. ..+-+.+.+.+..++||++|.
T Consensus 103 ~~d~g~~~~--~~--~~~~~~~~l~~~~~~ir~~l~ 134 (135)
T 3r6f_A 103 SADERLMIN--WK--AKSVSDKEYSEMVEEARLRVS 134 (135)
T ss_dssp BTTBSCCCC--CC--CCCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCceec--CC--CCCCCHHHHHHHHHHHHHHhc
Confidence 367899863 22 223345678888888888764
No 11
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0
Probab=44.99 E-value=27 Score=23.01 Aligned_cols=32 Identities=6% Similarity=0.106 Sum_probs=21.0
Q ss_pred CCCCCCCCcccccCCCChhHHHHHHHHHHHHHHHHH
Q psy16824 12 PGEAGFPLNSVYAKPQSQNEADLMKNYLTQVRQETG 47 (85)
Q Consensus 12 PGd~gFpLn~~y~~P~~~~E~d~lr~Yl~QlRqE~~ 47 (85)
.||.||+++- |..+-+.+.+.+..++||.++.
T Consensus 116 ~~d~g~~~~w----~~~~~~~~~l~~~~~~lr~~l~ 147 (149)
T 3ksv_A 116 DEKTGLKIGW----DTVKVASDELAEDAKRYSEAIA 147 (149)
T ss_dssp CTTSSCCCCC----CCCCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCcccCC----CCCCCCHHHHHHHHHHHHHHHh
Confidence 4678898632 2334455677778888888763
No 12
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=39.61 E-value=12 Score=20.73 Aligned_cols=22 Identities=18% Similarity=0.416 Sum_probs=16.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHH
Q psy16824 26 PQSQNEADLMKNYLTQVRQETG 47 (85)
Q Consensus 26 P~~~~E~d~lr~Yl~QlRqE~~ 47 (85)
|++..-.|.|.+|...||+=+.
T Consensus 8 PG~dA~pEela~Y~~~Lr~YiN 29 (36)
T 1bba_A 8 PGDNATPEQMAQYAAELRRYIN 29 (36)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
Confidence 4444555889999999998653
No 13
>1qbf_A Peptide YY, PYY; PP-fold, pancreatic hormone, , inhibitor/hormone complex; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ru5_A 1ruu_A 2rlk_A 2oop_A 2dez_A 2df0_A
Probab=37.91 E-value=0.77 Score=25.75 Aligned_cols=22 Identities=14% Similarity=0.360 Sum_probs=15.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHH
Q psy16824 26 PQSQNEADLMKNYLTQVRQETG 47 (85)
Q Consensus 26 P~~~~E~d~lr~Yl~QlRqE~~ 47 (85)
|++....|.|++|+.+||+=+.
T Consensus 8 Pg~da~pEela~Y~~~Lr~Yin 29 (37)
T 1qbf_A 8 PGEDASPEELSRYYASLRHYLN 29 (37)
T ss_dssp CCCSSSSSTTTTTTTGGGHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
Confidence 4555556789999999887653
No 14
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=33.85 E-value=27 Score=22.75 Aligned_cols=20 Identities=15% Similarity=0.331 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q psy16824 30 NEADLMKNYLTQVRQETGLR 49 (85)
Q Consensus 30 ~E~d~lr~Yl~QlRqE~~~R 49 (85)
..-+.|+.-+..||||+|.|
T Consensus 78 ~~~~el~~~I~~LrqEl~~~ 97 (98)
T 4fm3_A 78 DQLGELDKSLKRLRKQLGET 97 (98)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 34477999999999999865
No 15
>1hyw_A GPW, head-TO-tail joining protein W; novel fold, two helices, one two-stranded beta-sheet, viral protein; NMR {Enterobacteria phage lambda} SCOP: d.186.1.1 PDB: 2l6q_A 2l6r_A
Probab=31.58 E-value=27 Score=21.22 Aligned_cols=19 Identities=21% Similarity=0.550 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy16824 30 NEADLMKNYLTQVRQETGL 48 (85)
Q Consensus 30 ~E~d~lr~Yl~QlRqE~~~ 48 (85)
...+.|+.|+++|+-|||.
T Consensus 38 asi~~L~~~I~~le~~Lg~ 56 (68)
T 1hyw_A 38 TSVSDLKKYIAELEVQTGM 56 (68)
T ss_dssp TTHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHhcc
Confidence 3457799999999999975
No 16
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=31.21 E-value=28 Score=21.36 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=17.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHH
Q psy16824 27 QSQNEADLMKNYLTQVRQETGL 48 (85)
Q Consensus 27 ~~~~E~d~lr~Yl~QlRqE~~~ 48 (85)
.+-++.+.+|.=+.|||.|++.
T Consensus 14 ~~~~~~~~lr~~veqLr~el~~ 35 (73)
T 1got_G 14 EDLTEKDKLKMEVDQLKKEVTL 35 (73)
T ss_dssp --CTHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHHHHHHCC
Confidence 4556789999999999999973
No 17
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=30.87 E-value=75 Score=20.60 Aligned_cols=35 Identities=14% Similarity=0.340 Sum_probs=20.3
Q ss_pred CCCCCCCCcccccC-CCChhHHHHHHHHHHHHHHHHH
Q psy16824 12 PGEAGFPLNSVYAK-PQSQNEADLMKNYLTQVRQETG 47 (85)
Q Consensus 12 PGd~gFpLn~~y~~-P~~~~E~d~lr~Yl~QlRqE~~ 47 (85)
.||..|| +.++.. +...-+.+.+.+..++||..+.
T Consensus 99 ~~D~~~p-~~vw~~~~~~~~~~eel~~~~~~ir~~L~ 134 (137)
T 3ohe_A 99 QGDPAWP-GPVWGKQPPVPYTEEQQASVKAKLQPLLE 134 (137)
T ss_dssp TTSTTTT-SCCTTSSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCC-cccccCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3577776 233432 2333344667777788888774
No 18
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=30.84 E-value=6 Score=22.94 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=9.9
Q ss_pred hccchhhhhccc
Q psy16824 69 FSKKRFMDKSLT 80 (85)
Q Consensus 69 F~KRkFM~KsLs 80 (85)
.+||.|||+-+.
T Consensus 9 m~RRqfln~l~~ 20 (49)
T 1q90_R 9 MNKRNIMNLILA 20 (49)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 689999998764
No 19
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=30.74 E-value=45 Score=19.81 Aligned_cols=19 Identities=11% Similarity=0.118 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy16824 34 LMKNYLTQVRQETGLRVCE 52 (85)
Q Consensus 34 ~lr~Yl~QlRqE~~~RL~e 52 (85)
...+|+.++|.+.+.+|+.
T Consensus 46 s~~~~~~~~Rl~~A~~lL~ 64 (108)
T 3mn2_A 46 SPMAFAKRVRLQHAHNLLS 64 (108)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999886
No 20
>1k8v_A Neuropeptide F; moniezia expansa, NPF, unknown function; NMR {Synthetic} SCOP: j.6.1.1
Probab=30.40 E-value=35 Score=19.16 Aligned_cols=15 Identities=20% Similarity=0.472 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy16824 33 DLMKNYLTQVRQETG 47 (85)
Q Consensus 33 d~lr~Yl~QlRqE~~ 47 (85)
+.+|.||++|-+..+
T Consensus 18 ~~l~~YL~~LneYya 32 (40)
T 1k8v_A 18 AALRDYLRQINEYFA 32 (40)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 569999999987764
No 21
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=29.39 E-value=49 Score=19.67 Aligned_cols=19 Identities=5% Similarity=-0.011 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy16824 34 LMKNYLTQVRQETGLRVCE 52 (85)
Q Consensus 34 ~lr~Yl~QlRqE~~~RL~e 52 (85)
...+|+.++|.+.+.+|+.
T Consensus 48 s~~~~~~~~Rl~~A~~lL~ 66 (107)
T 2k9s_A 48 SVLSWREDQRISQAKLLLS 66 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999986
No 22
>3mix_A Flagellar biosynthesis protein FLHA; flagella biosynthesis, protein transport, type III secretion; 2.30A {Bacillus subtilis}
Probab=29.29 E-value=42 Score=26.12 Aligned_cols=43 Identities=28% Similarity=0.421 Sum_probs=12.0
Q ss_pred CCCC----CCCCCCcccccCCCChhHHH-------------------HHHHHHHHH--HHHHHHHHHHH
Q psy16824 10 DLPG----EAGFPLNSVYAKPQSQNEAD-------------------LMKNYLTQV--RQETGLRVCER 53 (85)
Q Consensus 10 ~iPG----d~gFpLn~~y~~P~~~~E~d-------------------~lr~Yl~Ql--RqE~~~RL~e~ 53 (85)
.||| ||.|-|.+++-.|..+++++ .+|.|+.+| |||+ .+|+++
T Consensus 134 ~l~G~~t~ePafgl~a~WI~~~~~e~A~~~Gytvvd~~tViaTHLsevi~~~a~ellg~qEv-q~LLd~ 201 (382)
T 3mix_A 134 LIEGIETVEPSFGLPAKWISEAVKDEADMLGYTVVDPASVVSTHITEKIKQHAHELIGRQET-KQLIDH 201 (382)
T ss_dssp --------------------------------CCBCHHHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHH
T ss_pred CCCCccccCCCCCCceEeeCHhhHHHHHHCCCEEEcHHHHHHHHHHHHHHHhHHHHhCHHHH-HHHHHH
Confidence 4677 67899999999888776654 577777776 7776 444443
No 23
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum}
Probab=29.04 E-value=76 Score=21.13 Aligned_cols=35 Identities=20% Similarity=0.460 Sum_probs=20.0
Q ss_pred CCCCCCCCcccccC-CCChhHHHHHHHHHHHHHHHHH
Q psy16824 12 PGEAGFPLNSVYAK-PQSQNEADLMKNYLTQVRQETG 47 (85)
Q Consensus 12 PGd~gFpLn~~y~~-P~~~~E~d~lr~Yl~QlRqE~~ 47 (85)
.||..||-. ++.. +...-+.+.+.+..++||+++.
T Consensus 104 ~~D~~~p~p-vw~~~~~~~~~~eel~~~a~~Ir~~L~ 139 (149)
T 3i4s_A 104 TGDAAWPRP-VWGVMQPLAHDATEVQNFISALRRKIW 139 (149)
T ss_dssp TTSTTTTSC-CTTTSCCCCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcc-ccCCCcCCCCCHHHHHHHHHHHHHHHh
Confidence 367777632 3321 2223344667777888888763
No 24
>3l34_A Sensor protein; two-component sensor,structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.70A {Pseudomonas aeruginosa} PDB: 3kkb_A 3n24_A
Probab=28.84 E-value=29 Score=23.82 Aligned_cols=16 Identities=25% Similarity=0.156 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHhc
Q psy16824 40 TQVRQETGLRVCERVF 55 (85)
Q Consensus 40 ~QlRqE~~~RL~e~vy 55 (85)
.+|||+||.-|+-.+=
T Consensus 19 lkLRQ~LGdqLilML~ 34 (130)
T 3l34_A 19 QQLRQLLGDQLVILLR 34 (130)
T ss_dssp HHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHc
Confidence 4899999999986553
No 25
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=28.77 E-value=41 Score=20.22 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHH
Q psy16824 30 NEADLMKNYLTQVRQE 45 (85)
Q Consensus 30 ~E~d~lr~Yl~QlRqE 45 (85)
+..+.+++||+|.|+.
T Consensus 16 EQi~~I~~yI~qAk~~ 31 (59)
T 1z0j_B 16 QQIDNIKAYIFDAKQC 31 (59)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHc
Confidence 4568899999999963
No 26
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=28.57 E-value=55 Score=19.65 Aligned_cols=19 Identities=11% Similarity=0.275 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy16824 35 MKNYLTQVRQETGLRVCER 53 (85)
Q Consensus 35 lr~Yl~QlRqE~~~RL~e~ 53 (85)
..+|+.++|.+.+.+|+..
T Consensus 52 ~~~~~~~~Rl~~A~~lL~~ 70 (113)
T 3oio_A 52 PSKYYLELRLNRARQLLQQ 70 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 6789999999999999874
No 27
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=28.38 E-value=9.4 Score=27.53 Aligned_cols=28 Identities=32% Similarity=0.623 Sum_probs=23.2
Q ss_pred CCCcccccCCCChhHHHHHHHHHHHHHHH
Q psy16824 17 FPLNSVYAKPQSQNEADLMKNYLTQVRQE 45 (85)
Q Consensus 17 FpLn~~y~~P~~~~E~d~lr~Yl~QlRqE 45 (85)
|=||+....|.--.+. .+..||+||++|
T Consensus 132 yNLdS~l~~P~~i~~~-yL~~fL~ql~~e 159 (191)
T 3o65_A 132 FNLNSLLAGPELISDT-CLANFLARLQQQ 159 (191)
T ss_dssp EECCTTSSSCEEECHH-HHHHHHGGGGST
T ss_pred EEccCCCCCCCCcChH-HHHHHHHHHHHC
Confidence 5699999999766665 699999999875
No 28
>3bei_A Prothrombin; serine protease, acute phase, blood coagulation, cleavage on basic residues, disease mutation, gamma-carboxyglutamic ACI glycoprotein; HET: NAG; 1.55A {Homo sapiens} PDB: 1tq7_A* 3lu9_A* 3bef_A* 2pgq_A* 1z8j_A* 1z8i_A* 3hk3_A 2pv9_A* 3edx_A* 2pux_A 3hk6_A 3hki_A* 2ocv_A* 1avg_L 2a1d_A*
Probab=28.14 E-value=24 Score=20.25 Aligned_cols=29 Identities=28% Similarity=0.608 Sum_probs=17.8
Q ss_pred CCCCCCCcccccCC--CChhHHHHHHHHHHH
Q psy16824 13 GEAGFPLNSVYAKP--QSQNEADLMKNYLTQ 41 (85)
Q Consensus 13 Gd~gFpLn~~y~~P--~~~~E~d~lr~Yl~Q 41 (85)
||+.=-+.-||.+- .|..|.|+|.+|+.+
T Consensus 13 GE~dCG~RPlFEk~~~~D~~E~ELl~SY~~g 43 (44)
T 3bei_A 13 GEADCGLRPLFEKKSLEDKTERELLESYIDG 43 (44)
T ss_dssp CSTTTTCCTTTGGGTCCCSSHHHHHHHCC--
T ss_pred cccccccchhHHHhccccccHHHHHHHHhcc
Confidence 34433344455443 688999999999754
No 29
>2ou6_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.80A {Deinococcus radiodurans} SCOP: a.213.1.2
Probab=28.07 E-value=88 Score=20.12 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=26.3
Q ss_pred CCCcccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16824 17 FPLNSVYAKPQSQNEADLMKNYLTQVRQETGLRVCERV 54 (85)
Q Consensus 17 FpLn~~y~~P~~~~E~d~lr~Yl~QlRqE~~~RL~e~v 54 (85)
||++.+=. +....|.+.|..|+.+.|+.+ .++|+.+
T Consensus 20 ~~ig~~~~-~~~~~~~~~l~~~l~~~~~~l-~~~l~~L 55 (190)
T 2ou6_A 20 YFVQPDAD-PAFTPHIGALVEMLTYARLTT-LQAVEGL 55 (190)
T ss_dssp GCCCTTSC-TTSCHHHHHHHHHHHHHHHHH-HHHHTTC
T ss_pred eeeeeccc-cCCCHHHHHHHHHHHHHHHHH-HHHHcCC
Confidence 77776643 456789999999999999877 4445443
No 30
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=27.78 E-value=34 Score=23.00 Aligned_cols=46 Identities=11% Similarity=0.112 Sum_probs=31.5
Q ss_pred CCCChhHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCCC-CChhhhhhc
Q psy16824 25 KPQSQNEADLMKNYLTQVRQE-TGLRVCERVFNTPDGK-PSKWWLCFS 70 (85)
Q Consensus 25 ~P~~~~E~d~lr~Yl~QlRqE-~~~RL~e~vy~~~~~~-psKwWm~F~ 70 (85)
.+.+++-.+.+.+.|.+++++ .-.+|+++.+.+.-+. -++.|+-+.
T Consensus 233 ~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~~~~~~~~~~~~~~ 280 (292)
T 1xt8_A 233 KKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKAHFGDDVKADDVVIE 280 (292)
T ss_dssp ETTCHHHHHHHHHHHHHHHTTTHHHHHHHHHTGGGSCTTCCHHHHBCC
T ss_pred eCCCHHHHHHHHHHHHHHHhCcHHHHHHHHhcCCcccccCCccccccC
Confidence 345565679999999999986 6689999988643332 344454443
No 31
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1
Probab=27.14 E-value=27 Score=22.72 Aligned_cols=15 Identities=13% Similarity=0.231 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy16824 35 MKNYLTQVRQETGLR 49 (85)
Q Consensus 35 lr~Yl~QlRqE~~~R 49 (85)
+.++.++||+.+..+
T Consensus 129 ~~~~~~~l~~~l~~~ 143 (154)
T 2oik_A 129 DQGSTTALKKAISVR 143 (154)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445556666666544
No 32
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=26.77 E-value=98 Score=19.06 Aligned_cols=31 Identities=23% Similarity=0.278 Sum_probs=24.9
Q ss_pred CChhHHHHHHHHHHHHHHH-HHHHHHHHhcCC
Q psy16824 27 QSQNEADLMKNYLTQVRQE-TGLRVCERVFNT 57 (85)
Q Consensus 27 ~~~~E~d~lr~Yl~QlRqE-~~~RL~e~vy~~ 57 (85)
.++.-.+.+...|.+++++ .-.+|+++.|..
T Consensus 192 ~~~~l~~~~~~~l~~l~~~g~~~~i~~k~~~~ 223 (226)
T 1wdn_A 192 GSDELRDKVNGALKTLRENGTYNEIYKKWFGT 223 (226)
T ss_dssp TCHHHHHHHHHHHHHHHHTSHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHHHHHHhCChHHHHHHHHcCC
Confidence 4556678999999999996 668999999853
No 33
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=26.68 E-value=59 Score=19.09 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16824 34 LMKNYLTQVRQETGLRVCER 53 (85)
Q Consensus 34 ~lr~Yl~QlRqE~~~RL~e~ 53 (85)
...+|+.++|-+.+.+|+..
T Consensus 47 s~~~~~~~~Rl~~A~~lL~~ 66 (103)
T 3lsg_A 47 PFQDYLLQKRMEKAKLLLLT 66 (103)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHC
Confidence 36899999999999998863
No 34
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=26.10 E-value=50 Score=19.21 Aligned_cols=16 Identities=6% Similarity=0.324 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHH
Q psy16824 30 NEADLMKNYLTQVRQE 45 (85)
Q Consensus 30 ~E~d~lr~Yl~QlRqE 45 (85)
+....+++|++|.|..
T Consensus 9 EQ~~~I~~~I~qAk~~ 24 (51)
T 1yzm_A 9 QQIHNITSFIRQAKAA 24 (51)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4568899999999863
No 35
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}
Probab=26.04 E-value=87 Score=20.78 Aligned_cols=35 Identities=9% Similarity=0.199 Sum_probs=20.8
Q ss_pred CCCCCCCCcccccCC-CChhHHHHHHHHHHHHHHHHH
Q psy16824 12 PGEAGFPLNSVYAKP-QSQNEADLMKNYLTQVRQETG 47 (85)
Q Consensus 12 PGd~gFpLn~~y~~P-~~~~E~d~lr~Yl~QlRqE~~ 47 (85)
.||..||- .++..+ ...-+.+.+.+...+||..|.
T Consensus 99 ~~D~~~~~-~vw~~~~~~~~~~eel~~~a~kIr~~L~ 134 (149)
T 3i24_A 99 TTDVAWPG-PVWGNTTGVIRAQSSQTQLVDLLRDKLS 134 (149)
T ss_dssp TTSTTTTS-CSTTCSCCCBCCHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCc-ceecCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 36777762 344332 223334667777888888774
No 36
>3myd_A Flagellar biosynthesis protein FLHA; flagellar export, type III secretion, cytoplasmic FRAG protein transport; 2.40A {Helicobacter pylori}
Probab=25.71 E-value=34 Score=26.46 Aligned_cols=45 Identities=24% Similarity=0.516 Sum_probs=31.7
Q ss_pred cCCCC----CCCCCCcccccCCCChhHHH-------------------HHHHHHHHH--HHHHHHHHHHHh
Q psy16824 9 FDLPG----EAGFPLNSVYAKPQSQNEAD-------------------LMKNYLTQV--RQETGLRVCERV 54 (85)
Q Consensus 9 F~iPG----d~gFpLn~~y~~P~~~~E~d-------------------~lr~Yl~Ql--RqE~~~RL~e~v 54 (85)
-.||| ||.|-|.+++-.|..+++++ .+|.|+.+| |||+ .+|++++
T Consensus 115 ~~l~G~~t~ePafgl~a~WI~~~~~e~A~~~Gytvvd~~tViatHLsevi~~~a~ellg~qEv-q~LLd~l 184 (365)
T 3myd_A 115 REIEGIPTKEPAFGMDALWIDAKNKEEAIIQGYTIIDPSTVIATHTSELVKKYAEDFITKDEV-KSLLERL 184 (365)
T ss_dssp SCCCSEEEECTTTCCEEEEECGGGHHHHHHTTCEEECHHHHHHHHHHHHHHHTGGGGCCHHHH-HHHHHHH
T ss_pred cCCCCccccCCCCCCceEeeCHhhHHHHHHCCCEEEcHHHHHHHHHHHHHHHhHHHHhCHHHH-HHHHHHH
Confidence 35788 78899999999888777765 455555554 6776 5566654
No 37
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti}
Probab=25.47 E-value=70 Score=20.65 Aligned_cols=33 Identities=9% Similarity=0.277 Sum_probs=18.3
Q ss_pred CCCCCCCCcccccCC-CChhHHHHHHHHHHHHHHH
Q psy16824 12 PGEAGFPLNSVYAKP-QSQNEADLMKNYLTQVRQE 45 (85)
Q Consensus 12 PGd~gFpLn~~y~~P-~~~~E~d~lr~Yl~QlRqE 45 (85)
.||+.||- .+|..+ ...-+.+.+.+..++||..
T Consensus 101 ~~D~~~~~-~~~~~~~~~~~~~~el~~~a~~i~~~ 134 (135)
T 3nrd_A 101 EGDPNWPG-PVWGFGKAEPWPEEEHRTFAARIMEN 134 (135)
T ss_dssp TTSTTTTS-CSTTCSCCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCC-cccCCCCCCCCCHHHHHHHHHHHHhh
Confidence 46777773 445322 2233445566667777764
No 38
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=25.38 E-value=64 Score=19.17 Aligned_cols=19 Identities=16% Similarity=0.169 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy16824 34 LMKNYLTQVRQETGLRVCE 52 (85)
Q Consensus 34 ~lr~Yl~QlRqE~~~RL~e 52 (85)
...+|+.++|-+.+.+|+.
T Consensus 49 s~~~~~~~~Rl~~A~~lL~ 67 (108)
T 3oou_A 49 HFTDYLNRYRVNYAKEELL 67 (108)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999886
No 39
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=25.17 E-value=1e+02 Score=19.13 Aligned_cols=26 Identities=12% Similarity=0.257 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16824 30 NEADLMKNYLTQVRQETGLRVCERVF 55 (85)
Q Consensus 30 ~E~d~lr~Yl~QlRqE~~~RL~e~vy 55 (85)
.-.+.++.|++++++|-..+++|.+=
T Consensus 29 kH~~nv~~yy~~~~~~~~~~~id~~~ 54 (77)
T 3cw1_L 29 KHKENVKDYYCKWMEEQAQSLIDKTT 54 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999999999553
No 40
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=24.99 E-value=1.2e+02 Score=19.36 Aligned_cols=34 Identities=9% Similarity=0.115 Sum_probs=27.1
Q ss_pred CCChhHHHHHHHHHHHHHHH-HHHHHHHHhcCCCC
Q psy16824 26 PQSQNEADLMKNYLTQVRQE-TGLRVCERVFNTPD 59 (85)
Q Consensus 26 P~~~~E~d~lr~Yl~QlRqE-~~~RL~e~vy~~~~ 59 (85)
+.++.=.+.+...|.+++++ .=.+|.++.|..+.
T Consensus 186 k~~~~l~~~ln~~l~~l~~~G~~~~i~~k~~~~~~ 220 (232)
T 3i6v_A 186 ESDGELRGKFDAAITSMKEDGTLNTMIKKWFGEDA 220 (232)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSHHHHHHHHHHCTTS
T ss_pred CCCHHHHHHHHHHHHHHHHCChHHHHHHHHcCCCC
Confidence 35566678999999999987 66899999996543
No 41
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=24.84 E-value=33 Score=24.28 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy16824 33 DLMKNYLTQVRQETGLRVCER 53 (85)
Q Consensus 33 d~lr~Yl~QlRqE~~~RL~e~ 53 (85)
+.|+.|++|+..|.+..-+|.
T Consensus 198 ~~m~~fl~~~~~E~~~~~~~~ 218 (223)
T 3djb_A 198 RYMEQFIEQFMKEWNAQILEH 218 (223)
T ss_dssp HHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHhHHHHhh
Confidence 679999999999998766653
No 42
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=24.74 E-value=18 Score=24.12 Aligned_cols=20 Identities=10% Similarity=0.366 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16824 34 LMKNYLTQVRQETGLRVCER 53 (85)
Q Consensus 34 ~lr~Yl~QlRqE~~~RL~e~ 53 (85)
.+-..|++|++|+|.+|.+|
T Consensus 33 avS~~i~~LE~~lg~~Lf~R 52 (306)
T 3hhg_A 33 AVSRIVKRLEEKLGVNLLNR 52 (306)
T ss_dssp HHHHHHHHHHHHHTSCCEET
T ss_pred HHHHHHHHHHHHhCCeeEee
Confidence 46788999999999988876
No 43
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=24.43 E-value=66 Score=19.88 Aligned_cols=19 Identities=5% Similarity=0.076 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy16824 34 LMKNYLTQVRQETGLRVCE 52 (85)
Q Consensus 34 ~lr~Yl~QlRqE~~~RL~e 52 (85)
...+|+.++|.+.+.+|+.
T Consensus 55 s~~~~l~~~Rl~~A~~lL~ 73 (129)
T 1bl0_A 55 SLGQYIRSRKMTEIAQKLK 73 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999886
No 44
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=24.40 E-value=60 Score=19.74 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy16824 34 LMKNYLTQVRQETGLRVCE 52 (85)
Q Consensus 34 ~lr~Yl~QlRqE~~~RL~e 52 (85)
...+|+.++|-+.+.+|+.
T Consensus 50 s~~~~~~~~Rl~~A~~lL~ 68 (120)
T 3mkl_A 50 SYSQLLTECRMQRALQLIV 68 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999985
No 45
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=24.11 E-value=21 Score=23.66 Aligned_cols=21 Identities=14% Similarity=0.301 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy16824 34 LMKNYLTQVRQETGLRVCERV 54 (85)
Q Consensus 34 ~lr~Yl~QlRqE~~~RL~e~v 54 (85)
.+-.-|++|.+|+|.+|.+|-
T Consensus 31 avS~~i~~LE~~lg~~Lf~R~ 51 (294)
T 1ixc_A 31 PITRQMQALEADLGVVLLERS 51 (294)
T ss_dssp HHHHHHHHHHHHHTSCCBC--
T ss_pred hHHHHHHHHHHHHCCEEEEeC
Confidence 467789999999999888763
No 46
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=23.76 E-value=56 Score=20.12 Aligned_cols=16 Identities=6% Similarity=0.324 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHH
Q psy16824 30 NEADLMKNYLTQVRQE 45 (85)
Q Consensus 30 ~E~d~lr~Yl~QlRqE 45 (85)
+....+++||+|.|..
T Consensus 27 EQ~~~I~~yI~qAk~~ 42 (69)
T 1z0k_B 27 QQIHNITSFIRQAKAA 42 (69)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5568999999999974
No 47
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=23.06 E-value=36 Score=24.08 Aligned_cols=21 Identities=14% Similarity=0.205 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy16824 33 DLMKNYLTQVRQETGLRVCER 53 (85)
Q Consensus 33 d~lr~Yl~QlRqE~~~RL~e~ 53 (85)
+.|++|++|+..|.+..-+|.
T Consensus 198 ~~m~~fl~~~~~E~~~~~~~~ 218 (223)
T 3dto_A 198 VFMEQFIERFLSEWNGDMLEH 218 (223)
T ss_dssp HHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHHHhHHHHhh
Confidence 679999999999997766653
No 48
>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} SCOP: d.13.1.1
Probab=22.81 E-value=37 Score=21.98 Aligned_cols=33 Identities=15% Similarity=0.318 Sum_probs=19.2
Q ss_pred CCCCCCCCcccccCCCChhHHHHHHHHHHHHHHHH
Q psy16824 12 PGEAGFPLNSVYAKPQSQNEADLMKNYLTQVRQET 46 (85)
Q Consensus 12 PGd~gFpLn~~y~~P~~~~E~d~lr~Yl~QlRqE~ 46 (85)
.|+.||. ..+......-+.+.+.+..++||+.|
T Consensus 114 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ir~~l 146 (147)
T 3imi_A 114 GENDGFG--AVWKSHQNEYTMENLQNIASTIANSV 146 (147)
T ss_dssp STTCSEE--EEECCCGGGCCHHHHHHHHHHHHHHC
T ss_pred cCCCCce--eeccccCCCCCHHHHHHHHHHHHHhh
Confidence 4678883 34543222223466777788888754
No 49
>1pya_B Pyruvoyl-dependent histidine decarboxylase (L- histidine carboxylase); carboxy-lyase; 2.50A {Lactobacillus SP} SCOP: d.155.1.1 PDB: 1hq6_B 1ibu_B 1ibt_B 1ibv_B* 1ibw_B*
Probab=22.78 E-value=89 Score=23.32 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=20.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy16824 27 QSQNEADLMKNYLTQVRQETGLRVCER 53 (85)
Q Consensus 27 ~~~~E~d~lr~Yl~QlRqE~~~RL~e~ 53 (85)
.+.+|+| +.+||.+.|.++..-+++.
T Consensus 122 ~~~ne~e-l~~yL~~~rk~ia~Si~~c 147 (229)
T 1pya_B 122 ETPNEDE-LLEYLEGRRKAMAKSIAEC 147 (229)
T ss_dssp CSSCHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHH-HHHHHHHHHHHHHHHHHHh
Confidence 3556654 5899999999999988873
No 50
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=22.75 E-value=59 Score=22.64 Aligned_cols=15 Identities=20% Similarity=0.412 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy16824 33 DLMKNYLTQVRQETG 47 (85)
Q Consensus 33 d~lr~Yl~QlRqE~~ 47 (85)
+.|++||+|+..|++
T Consensus 204 ~~m~~fl~~~~~E~~ 218 (231)
T 2pjq_A 204 AVMHEFVDQFKAEWT 218 (231)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 578888899999885
No 51
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A
Probab=22.60 E-value=55 Score=22.08 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy16824 32 ADLMKNYLTQVRQETGLRVCE 52 (85)
Q Consensus 32 ~d~lr~Yl~QlRqE~~~RL~e 52 (85)
.|.+.+|+.|+|.|==.+-|.
T Consensus 38 ~eq~~ay~~~~RieeIt~kL~ 58 (124)
T 4fxw_B 38 REQERAYIVQLQIEDLTRKLR 58 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHh
Confidence 477899999999764444443
No 52
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=22.17 E-value=32 Score=19.38 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy16824 29 QNEADLMKNYLTQVRQETG 47 (85)
Q Consensus 29 ~~E~d~lr~Yl~QlRqE~~ 47 (85)
..+...+...++++|.+.|
T Consensus 7 ~~~~~~l~~~l~~~r~~~g 25 (80)
T 3kz3_A 7 LEDARRLKAIWEKKKNELG 25 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 3455678899999998876
No 53
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=21.70 E-value=68 Score=21.26 Aligned_cols=20 Identities=15% Similarity=0.126 Sum_probs=14.7
Q ss_pred ChhHHHHHHHHHHHHHHHHH
Q psy16824 28 SQNEADLMKNYLTQVRQETG 47 (85)
Q Consensus 28 ~~~E~d~lr~Yl~QlRqE~~ 47 (85)
+++.-+..+.||++++++++
T Consensus 211 ~~~~~~~~~~~l~~~~~~~~ 230 (232)
T 1a7t_A 211 GTELIEHTKQIVNQYIESTS 230 (232)
T ss_dssp CTHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHhc
Confidence 34556778888888888775
No 54
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=21.64 E-value=19 Score=24.86 Aligned_cols=10 Identities=40% Similarity=0.713 Sum_probs=8.0
Q ss_pred CC-hhhhhhcc
Q psy16824 62 PS-KWWLCFSK 71 (85)
Q Consensus 62 ps-KwWm~F~K 71 (85)
|| |||+|+++
T Consensus 212 ~~~~~~~~~~~ 222 (224)
T 1prx_A 212 PSGKKYLRYTP 222 (224)
T ss_dssp TTCCCCCEEEC
T ss_pred CCCCceEEecc
Confidence 55 79999876
No 55
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=21.27 E-value=1.4e+02 Score=18.55 Aligned_cols=31 Identities=6% Similarity=-0.011 Sum_probs=25.6
Q ss_pred CCChhHHHHHHHHHHHHHHH-HHHHHHHHhcC
Q psy16824 26 PQSQNEADLMKNYLTQVRQE-TGLRVCERVFN 56 (85)
Q Consensus 26 P~~~~E~d~lr~Yl~QlRqE-~~~RL~e~vy~ 56 (85)
+.++.-.+.+.+.|.+++++ .-.+|+++.|.
T Consensus 199 ~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 230 (234)
T 3h7m_A 199 QGDAELLARFSEGLAILRKTGQYEAIRAKWLG 230 (234)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHHcCcHHHHHHHhcc
Confidence 45666779999999999986 66899999985
No 56
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=21.26 E-value=20 Score=23.47 Aligned_cols=20 Identities=10% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy16824 35 MKNYLTQVRQETGLRVCERV 54 (85)
Q Consensus 35 lr~Yl~QlRqE~~~RL~e~v 54 (85)
+-.-|++|++|+|..|.+|-
T Consensus 29 vS~~i~~LE~~lg~~Lf~R~ 48 (300)
T 3mz1_A 29 VTNLIQGLEAHLRTKLLNRT 48 (300)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHhCCeeEecC
Confidence 66789999999999999874
No 57
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=20.56 E-value=67 Score=21.80 Aligned_cols=14 Identities=7% Similarity=0.228 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHH
Q psy16824 33 DLMKNYLTQVRQET 46 (85)
Q Consensus 33 d~lr~Yl~QlRqE~ 46 (85)
+.|++|++|+..|.
T Consensus 204 ~~m~~f~~~~~~E~ 217 (220)
T 2pq7_A 204 SFVVEFVQRFLAEW 217 (220)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 57888888888887
No 58
>4f9k_A CAMP-dependent protein kinase type I-beta regulat subunit; structural genomics, PSI-biology; 2.80A {Homo sapiens} PDB: 2ezw_A 3im3_A 3im4_A
Probab=20.51 E-value=66 Score=20.99 Aligned_cols=28 Identities=11% Similarity=0.363 Sum_probs=20.3
Q ss_pred cccCCCChhHHHHHHHHHHHHHHHHHHHHH
Q psy16824 22 VYAKPQSQNEADLMKNYLTQVRQETGLRVC 51 (85)
Q Consensus 22 ~y~~P~~~~E~d~lr~Yl~QlRqE~~~RL~ 51 (85)
++..|.|. .+-+++|+++||.+-..-+.
T Consensus 61 l~~RPeDP--v~FLaeYF~kL~~~r~~~~~ 88 (95)
T 4f9k_A 61 CISKPERP--MKFLREHFEKLEKEENRQIL 88 (95)
T ss_dssp HHHCCSCH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCH--HHHHHHHHHHHHHHHHhHHH
Confidence 45667655 57899999999987654443
No 59
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ...
Probab=20.30 E-value=57 Score=21.12 Aligned_cols=15 Identities=0% Similarity=0.197 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy16824 33 DLMKNYLTQVRQETG 47 (85)
Q Consensus 33 d~lr~Yl~QlRqE~~ 47 (85)
+.|..-+++|++++.
T Consensus 34 ~~L~~~l~~Lq~~l~ 48 (177)
T 1pwb_A 34 EALQGQVQHLQAAFS 48 (177)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344477777777763
No 60
>1etr_L Epsilon-thrombin; serine proteinase, hydrolase-hydrolase inhibitor complex; HET: MIT; 2.20A {Bos taurus} SCOP: b.47.1.2 PDB: 1bbr_L* 1ets_L* 1ett_L* 1hrt_L 1id5_L 1mkw_L 1mkx_L 1tbq_L 1tbr_L 1toc_A 1ucy_L* 1uvt_L* 1uvu_L* 1vit_L* 1ycp_L 2ody_A*
Probab=20.21 E-value=47 Score=19.40 Aligned_cols=28 Identities=36% Similarity=0.655 Sum_probs=17.9
Q ss_pred CCCCCCCcccccCC--CChhHHHHHHHHHH
Q psy16824 13 GEAGFPLNSVYAKP--QSQNEADLMKNYLT 40 (85)
Q Consensus 13 Gd~gFpLn~~y~~P--~~~~E~d~lr~Yl~ 40 (85)
||+.=-+.-||.+- .|..|.|+|.+|+.
T Consensus 18 GE~dCG~RPlFEk~~~~D~~E~ELleSY~~ 47 (49)
T 1etr_L 18 GEADCGLRPLFEKKQVQDQTEKELFESYIE 47 (49)
T ss_dssp CCTTTTCCTTTGGGTCCCTTHHHHHHHHTT
T ss_pred cccccccchhHhhhccccccHHHHHHHHhc
Confidence 34333344445443 67899999999974
No 61
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=20.19 E-value=23 Score=23.90 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16824 34 LMKNYLTQVRQETGLRVCER 53 (85)
Q Consensus 34 ~lr~Yl~QlRqE~~~RL~e~ 53 (85)
.+-.-|++|++|+|.+|.+|
T Consensus 32 avS~~i~~LE~~lg~~Lf~R 51 (305)
T 3fxq_A 32 ALSAAIQQLEDELKAPLLVR 51 (305)
T ss_dssp HHHHHHHHHHHHHTSCSEEE
T ss_pred HHHHHHHHHHHHhCCeeEEe
Confidence 46788999999999998876
No 62
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=20.09 E-value=91 Score=24.05 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=17.0
Q ss_pred CChhHHHHH-------HHHHHHHHHHHHHHH
Q psy16824 27 QSQNEADLM-------KNYLTQVRQETGLRV 50 (85)
Q Consensus 27 ~~~~E~d~l-------r~Yl~QlRqE~~~RL 50 (85)
.|++|.+.+ |+|+.-+|-|+..|=
T Consensus 150 ~~~~e~~e~~eli~icrEYilal~iEl~Rr~ 180 (325)
T 3mv2_A 150 DDAEDEKLAHKILETAREYILGLSIELERRS 180 (325)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566777666 777777888886653
Done!