RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16824
         (85 letters)



>d1k8ke_ a.148.1.1 (E:) Arp2/3 complex 21 kDa subunit ARPC3 {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 174

 Score =  144 bits (365), Expect = 1e-46
 Identities = 46/80 (57%), Positives = 65/80 (81%)

Query: 1   MYSLALAKFDLPGEAGFPLNSVYAKPQSQNEADLMKNYLTQVRQETGLRVCERVFNTPDG 60
           MY+L +  F +PGE GFPLN++YAKP ++ E ++M+ YL Q+RQETGLR+CE+VF+  + 
Sbjct: 94  MYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQND 153

Query: 61  KPSKWWLCFSKKRFMDKSLT 80
           KPSKWW CF K++FM+KSL+
Sbjct: 154 KPSKWWTCFVKRQFMNKSLS 173


>d1xqoa_ a.96.1.6 (A:) 8-oxoguanine DNA glycosylase, AgoG
          {Pyrobaculum aerophilum [TaxId: 13773]}
          Length = 253

 Score = 23.6 bits (51), Expect = 3.8
 Identities = 7/24 (29%), Positives = 9/24 (37%), Gaps = 1/24 (4%)

Query: 60 GKPSKWWLCFSKKRFMDKSLTALG 83
          GK  + W  F K  F    +  L 
Sbjct: 62 GKGEEHWEYFGKY-FSQLEVIDLC 84


>d1zata2 d.335.1.1 (A:217-338) L,D-transpeptidase, pre-catalytic
          domain {Enterococcus faecium [TaxId: 1352]}
          Length = 122

 Score = 22.4 bits (48), Expect = 7.6
 Identities = 3/27 (11%), Positives = 10/27 (37%)

Query: 35 MKNYLTQVRQETGLRVCERVFNTPDGK 61
          ++ Y+T +  +      +  F +    
Sbjct: 49 VRQYVTDLGTKYNTSTNDTKFKSTKRG 75


>d1m5sa1 d.58.33.1 (A:1-145)
          Formylmethanofuran:tetrahydromethanopterin
          formyltransferase {Archaeon Methanosarcina barkeri
          [TaxId: 2208]}
          Length = 145

 Score = 22.4 bits (48), Expect = 8.1
 Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 2/31 (6%)

Query: 56 NTPDGKPSKWWLCF--SKKRFMDKSLTALGQ 84
           TPDG+P  +        +   ++ L  +GQ
Sbjct: 64 ETPDGRPGVYVQICTFKYEALEEQLLERIGQ 94


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.132    0.408 

Gapped
Lambda     K      H
   0.267   0.0547    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 304,102
Number of extensions: 10659
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 6
Length of query: 85
Length of database: 2,407,596
Length adjustment: 50
Effective length of query: 35
Effective length of database: 1,721,096
Effective search space: 60238360
Effective search space used: 60238360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.3 bits)