BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16825
(183 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LO1|A Chain A, Estrogen Related Receptor 2 Dna Binding Domain In Complex
With Dna
Length = 98
Score = 169 bits (427), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 77/93 (82%), Positives = 87/93 (93%)
Query: 8 LPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQA 67
+P+RLCLVCGD+ASG+HYGVASCEACKAFFKRTIQGNIEY+CPA+N+CEI KRRRK+CQA
Sbjct: 2 IPKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQA 61
Query: 68 CRFQKCLRKGMLKEGVRLDRVRGGRQKYRRNPD 100
CRF K L+ GMLKEGVRLDRVRGGRQKY+R D
Sbjct: 62 CRFMKALKVGMLKEGVRLDRVRGGRQKYKRRLD 94
>pdb|1HCQ|A Chain A, The Crystal Structure Of The Estrogen Receptor
Dna-Binding Domain Bound To Dna: How Receptors
Discriminate Between Their Response Elements
pdb|1HCQ|B Chain B, The Crystal Structure Of The Estrogen Receptor
Dna-Binding Domain Bound To Dna: How Receptors
Discriminate Between Their Response Elements
pdb|1HCQ|E Chain E, The Crystal Structure Of The Estrogen Receptor
Dna-Binding Domain Bound To Dna: How Receptors
Discriminate Between Their Response Elements
pdb|1HCQ|F Chain F, The Crystal Structure Of The Estrogen Receptor
Dna-Binding Domain Bound To Dna: How Receptors
Discriminate Between Their Response Elements
Length = 84
Score = 114 bits (284), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 63/81 (77%), Gaps = 1/81 (1%)
Query: 11 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRF 70
R C VC D ASG+HYGV SCE CKAFFKR+IQG+ +Y CPA+N C I+K RRK+CQACR
Sbjct: 5 RYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRL 64
Query: 71 QKCLRKGMLKEGVRLDRVRGG 91
+KC GM+K G+R DR RGG
Sbjct: 65 RKCYEVGMMKGGIRKDR-RGG 84
>pdb|2FF0|A Chain A, Solution Structure Of Steroidogenic Factor 1 Dna Binding
Domain Bound To Its Target Sequence In The Inhibin
Alpha- Subunit Promoter
Length = 102
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 67/98 (68%), Gaps = 4/98 (4%)
Query: 12 LCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQ 71
LC VCGD SG+HYG+ +CE+CK FFKRT+Q N YTC S C+I+K +RK C CRFQ
Sbjct: 3 LCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKHYTCTESQSCKIDKTQRKRCPFCRFQ 62
Query: 72 KCLRKGMLKEGVRLDRVRGGRQK----YRRNPDLLSQQ 105
KCL GM E VR DR+RGGR K Y+R+ L Q+
Sbjct: 63 KCLTVGMRLEAVRADRMRGGRNKFGPMYKRDRALKQQK 100
>pdb|2A66|A Chain A, Human Liver Receptor Homologue Dna-Binding Domain (Hlrh-1
Dbd) In Complex With Dsdna From The Hcyp7a1 Promoter
Length = 113
Score = 109 bits (272), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 68/98 (69%), Gaps = 4/98 (4%)
Query: 12 LCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQ 71
LC VCGD SG+HYG+ +CE+CK FFKRT+Q N YTC + +C+I+K +RK C CRFQ
Sbjct: 11 LCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQ 70
Query: 72 KCLRKGMLKEGVRLDRVRGGRQK----YRRNPDLLSQQ 105
KCL GM E VR DR+RGGR K Y+R+ L Q+
Sbjct: 71 KCLSVGMKLEAVRADRMRGGRNKFGPMYKRDRALKQQK 108
>pdb|1HCP|A Chain A, Dna Recognition By The Oestrogen Receptor: From Solution
To The Crystal
Length = 76
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 56/72 (77%)
Query: 11 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRF 70
R C VC D ASG+HYGV SCE CKAFFKR+IQG+ +Y CPA+N C I+K RRK+CQACR
Sbjct: 5 RYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRL 64
Query: 71 QKCLRKGMLKEG 82
+KC GM+K G
Sbjct: 65 RKCYEVGMMKGG 76
>pdb|4AA6|E Chain E, The Oestrogen Receptor Recognizes An Imperfectly
Palindromic Response Element Through An Alternative
Side- Chain Conformation
Length = 71
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 46/70 (65%), Positives = 55/70 (78%)
Query: 11 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRF 70
R C VC D ASG+HYGV SCE CKAFFKR+IQG+ +Y CPA+N C I+K RRK+CQACR
Sbjct: 2 RYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRL 61
Query: 71 QKCLRKGMLK 80
+KC GM+K
Sbjct: 62 RKCYEVGMMK 71
>pdb|4AA6|A Chain A, The Oestrogen Receptor Recognizes An Imperfectly
Palindromic Response Element Through An Alternative
Side- Chain Conformation
pdb|4AA6|B Chain B, The Oestrogen Receptor Recognizes An Imperfectly
Palindromic Response Element Through An Alternative
Side- Chain Conformation
pdb|4AA6|F Chain F, The Oestrogen Receptor Recognizes An Imperfectly
Palindromic Response Element Through An Alternative
Side- Chain Conformation
Length = 71
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 46/70 (65%), Positives = 55/70 (78%)
Query: 11 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRF 70
R C VC D ASG+HYGV SCE CKAFFKR+IQG+ +Y CPA+N C I+K RRK+CQACR
Sbjct: 2 RYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRL 61
Query: 71 QKCLRKGMLK 80
+KC GM+K
Sbjct: 62 RKCYEVGMMK 71
>pdb|3DZU|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
pdb|3DZY|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
pdb|3E00|A Chain A, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 467
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 59/81 (72%)
Query: 10 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACR 69
+ +C +CGD +SG HYGV SCE CK FFKRT++ ++ YTC + DC I+KR+R CQ CR
Sbjct: 137 KHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCR 196
Query: 70 FQKCLRKGMLKEGVRLDRVRG 90
+QKCL GM +E V+ +R RG
Sbjct: 197 YQKCLAMGMKREAVQEERQRG 217
>pdb|1CIT|A Chain A, Dna-Binding Mechanism Of The Monomeric Orphan Nuclear
Receptor Ngfi-B
Length = 89
Score = 99.8 bits (247), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 60/87 (68%)
Query: 13 CLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQK 72
C VCGD AS HYGV +CE CK FFKRT+Q + +Y C A+ DC ++KRRR CQ CRFQK
Sbjct: 3 CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQK 62
Query: 73 CLRKGMLKEGVRLDRVRGGRQKYRRNP 99
CL GM+KE VR D ++G R + P
Sbjct: 63 CLAVGMVKEVVRTDSLKGRRGRLPSKP 89
>pdb|1YNW|B Chain B, Crystal Structure Of Vitamin D Receptor And 9-Cis
Retinoic Acid Receptor Dna-Binding Domains Bound To A
Dr3 Response Element
Length = 99
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 59/83 (71%)
Query: 8 LPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQA 67
+ +C +CGD +SG HYGV SCE CK FFKRT++ ++ YTC + DC I+KR+R CQ
Sbjct: 1 FTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQY 60
Query: 68 CRFQKCLRKGMLKEGVRLDRVRG 90
CR+QKCL GM +E V+ +R RG
Sbjct: 61 CRYQKCLAMGMKREAVQEERQRG 83
>pdb|1DSZ|B Chain B, Structure Of The RxrRAR DNA-Binding Domain Heterodimer
In Complex With The Retinoic Acid Response Element Dr1
Length = 85
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 59/83 (71%)
Query: 8 LPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQA 67
+ +C +CGD +SG HYGV SCE CK FFKRT++ ++ YTC + DC I+KR+R CQ
Sbjct: 3 FTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQY 62
Query: 68 CRFQKCLRKGMLKEGVRLDRVRG 90
CR+QKCL GM +E V+ +R RG
Sbjct: 63 CRYQKCLAMGMKREAVQEERQRG 85
>pdb|1RXR|A Chain A, High Resolution Solution Structure Of The Retinoid X
Receptor Dna Binding Domain, Nmr, 20 Structure
Length = 83
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 58/82 (70%)
Query: 9 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQAC 68
+ +C +CGD +SG HYGV SCE CK FFKRT++ ++ YTC + DC I+KR+R CQ C
Sbjct: 2 TKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYC 61
Query: 69 RFQKCLRKGMLKEGVRLDRVRG 90
R+QK L GM +E V+ +R RG
Sbjct: 62 RYQKALAMGMKREAVQEERQRG 83
>pdb|1BY4|A Chain A, Structure And Mechanism Of The Homodimeric Assembly Of
The Rxr On Dna
pdb|1BY4|B Chain B, Structure And Mechanism Of The Homodimeric Assembly Of
The Rxr On Dna
pdb|1BY4|C Chain C, Structure And Mechanism Of The Homodimeric Assembly Of
The Rxr On Dna
pdb|1BY4|D Chain D, Structure And Mechanism Of The Homodimeric Assembly Of
The Rxr On Dna
Length = 82
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 57/80 (71%)
Query: 8 LPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQA 67
+ +C +CGD +SG HYGV SCE CK FFKRT++ ++ YTC + DC I+KR+R CQ
Sbjct: 3 FTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQY 62
Query: 68 CRFQKCLRKGMLKEGVRLDR 87
CR+QKCL GM +E V+ +R
Sbjct: 63 CRYQKCLAMGMKREAVQEER 82
>pdb|1HLZ|A Chain A, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1HLZ|B Chain B, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1GA5|A Chain A, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1GA5|B Chain B, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1GA5|E Chain E, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1GA5|F Chain F, Crystal Structure Of The Orphan Nuclear Receptor Rev-
Erb(Alpha) Dna-Binding Domain Bound To Its Cognate
Response Element
pdb|1A6Y|A Chain A, Reverba Orphan Nuclear ReceptorDNA COMPLEX
pdb|1A6Y|B Chain B, Reverba Orphan Nuclear ReceptorDNA COMPLEX
Length = 94
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 12 LCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYT-CPASNDCEINKRRRKACQACRF 70
LC VCGDVASGFHYGV +CE CK FF+R+IQ NI+Y C + +C I + R CQ CRF
Sbjct: 9 LCKVCGDVASGFHYGVLACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRF 68
Query: 71 QKCLRKGMLKEGVRLDRV 88
+KCL GM ++ VR R+
Sbjct: 69 KKCLSVGMSRDAVRFGRI 86
>pdb|1R0N|A Chain A, Crystal Structure Of Heterodimeric Ecdsyone Receptor Dna
Binding Complex
Length = 81
Score = 92.8 bits (229), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 55/77 (71%)
Query: 8 LPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQA 67
+ +C +CGD +SG HYGV SCE CK FFKRT++ ++ YTC + DC I+KR+R CQ
Sbjct: 1 FTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQY 60
Query: 68 CRFQKCLRKGMLKEGVR 84
CR+QKCL GM +E V+
Sbjct: 61 CRYQKCLAMGMKREAVQ 77
>pdb|1DSZ|A Chain A, Structure Of The RxrRAR DNA-Binding Domain Heterodimer
In Complex With The Retinoic Acid Response Element Dr1
Length = 86
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 51/75 (68%)
Query: 13 CLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQK 72
C VC D +SG+HYGV++CE CK FF+R+IQ N+ YTC +C INK R CQ CR QK
Sbjct: 7 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 66
Query: 73 CLRKGMLKEGVRLDR 87
C GM KE VR DR
Sbjct: 67 CFEVGMSKESVRNDR 81
>pdb|2HAN|A Chain A, Structural Basis Of Heterodimeric Ecdysteroid Receptor
Interaction With Natural Response Element Hsp27 Gene
Promoter
Length = 93
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 56/79 (70%)
Query: 9 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQAC 68
+ LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y C + +C I+KR+R CQ C
Sbjct: 9 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYC 68
Query: 69 RFQKCLRKGMLKEGVRLDR 87
R+QKCL GM +E V+ +R
Sbjct: 69 RYQKCLTCGMKREAVQEER 87
>pdb|4HN5|A Chain A, Gr Dna Binding Domain - Tslp Ngre Complex
pdb|4HN5|B Chain B, Gr Dna Binding Domain - Tslp Ngre Complex
Length = 117
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 50/70 (71%)
Query: 9 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQAC 68
P +LCLVC D ASG HYGV +C +CK FFKR ++G Y C NDC I+K RRK C AC
Sbjct: 28 PPKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPAC 87
Query: 69 RFQKCLRKGM 78
R++KCL+ GM
Sbjct: 88 RYRKCLQAGM 97
>pdb|1R0O|A Chain A, Crystal Structure Of The Heterodimeric Ecdysone Receptor
Dna-Binding Complex
Length = 86
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 56/79 (70%)
Query: 9 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQAC 68
+ LC +CGD ASG HYGV SCE CK FFKRT++ ++ Y C + +C I+KR+R CQ C
Sbjct: 7 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYC 66
Query: 69 RFQKCLRKGMLKEGVRLDR 87
R+QKCL GM +E V+ +R
Sbjct: 67 RYQKCLTCGMKREAVQEER 85
>pdb|1HRA|A Chain A, The Solution Structure Of The Human Retinoic Acid
Receptor- Beta Dna-Binding Domain
Length = 80
Score = 90.1 bits (222), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 53/79 (67%), Gaps = 2/79 (2%)
Query: 8 LPR--RLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKAC 65
+PR + C VC D +SG+HYGV++CE CK FF+R+IQ N+ YTC +C INK R C
Sbjct: 1 MPRVYKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMIYTCHRDKNCVINKVTRNRC 60
Query: 66 QACRFQKCLRKGMLKEGVR 84
Q CR QKC GM KE VR
Sbjct: 61 QYCRLQKCFEVGMSKESVR 79
>pdb|1R4O|A Chain A, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
pdb|1R4O|B Chain B, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
pdb|1R4R|A Chain A, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
Length = 92
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 49/70 (70%)
Query: 9 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQAC 68
P R CLVC D ASG HYGV +C +CK FFKR ++G Y C NDC I+K RRK C AC
Sbjct: 3 PARPCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPAC 62
Query: 69 RFQKCLRKGM 78
R++KCL+ GM
Sbjct: 63 RYRKCLQAGM 72
>pdb|4HN6|A Chain A, Gr Dna Binding Domain R460d/d462r - Tslp Ngre Complex
pdb|4HN6|B Chain B, Gr Dna Binding Domain R460d/d462r - Tslp Ngre Complex
Length = 114
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 50/74 (67%)
Query: 5 EEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKA 64
+ P +LCLVC D ASG HYGV +C +CK FFKR ++G Y C N C I+K RRK
Sbjct: 21 QSNAPPKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGDNRCIIDKIRRKN 80
Query: 65 CQACRFQKCLRKGM 78
C ACR++KCL+ GM
Sbjct: 81 CPACRYRKCLQAGM 94
>pdb|1R4R|B Chain B, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
Length = 92
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 49/70 (70%)
Query: 9 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQAC 68
P R CLVC D ASG HYGV +C +CK FFKR ++G Y C NDC I+K RRK C AC
Sbjct: 3 PARPCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPAC 62
Query: 69 RFQKCLRKGM 78
R++KCL+ GM
Sbjct: 63 RYRKCLQAGM 72
>pdb|1GLU|A Chain A, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
pdb|1GLU|B Chain B, Crystallographic Analysis Of The Interaction Of The
Glucocorticoid Receptor With Dna
Length = 81
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 49/70 (70%)
Query: 9 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQAC 68
P R CLVC D ASG HYGV +C +CK FFKR ++G Y C NDC I+K RRK C AC
Sbjct: 3 PARPCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPAC 62
Query: 69 RFQKCLRKGM 78
R++KCL+ GM
Sbjct: 63 RYRKCLQAGM 72
>pdb|2C7A|A Chain A, Structure Of The Progesterone Receptor-Dna Complex
pdb|2C7A|B Chain B, Structure Of The Progesterone Receptor-Dna Complex
Length = 78
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 52/74 (70%)
Query: 9 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQAC 68
P+++CL+CGD ASG HYGV +C +CK FFKR ++G Y C NDC ++K RRK C AC
Sbjct: 1 PQKICLICGDEASGCHYGVLTCGSCKVFFKRAMEGQHNYLCAGRNDCIVDKIRRKNCPAC 60
Query: 69 RFQKCLRKGMLKEG 82
R +KC + GM+ G
Sbjct: 61 RLRKCCQAGMVLGG 74
>pdb|1YNW|A Chain A, Crystal Structure Of Vitamin D Receptor And 9-Cis
Retinoic Acid Receptor Dna-Binding Domains Bound To A
Dr3 Response Element
Length = 110
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 53/76 (69%)
Query: 11 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRF 70
R+C VCGD A+GFH+ +CE CK FF+R+++ +TC A+ DC I K R+ACQACR
Sbjct: 7 RICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCAANGDCRITKDNRRACQACRL 66
Query: 71 QKCLRKGMLKEGVRLD 86
++C+ GM+KE + D
Sbjct: 67 KRCVDIGMMKEFILTD 82
>pdb|2NLL|A Chain A, Retinoid X Receptor-Thyroid Hormone Receptor Dna-Binding
Domain Heterodimer Bound To Thyroid Response Element
Dna
Length = 66
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 49/66 (74%)
Query: 13 CLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQK 72
C +CGD +SG HYGV SCE CK FFKRT++ ++ YTC + DC I+KR+R CQ CR+QK
Sbjct: 1 CAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQK 60
Query: 73 CLRKGM 78
CL GM
Sbjct: 61 CLAMGM 66
>pdb|1KB2|A Chain A, Crystal Structure Of Vdr Dna-Binding Domain Bound To
Mouse Osteopontin (Spp) Response Element
pdb|1KB2|B Chain B, Crystal Structure Of Vdr Dna-Binding Domain Bound To
Mouse Osteopontin (Spp) Response Element
pdb|1KB4|A Chain A, Crystal Structure Of Vdr Dna-Binding Domain Bound To A
Canonical Direct Repeat With Three Base Pair Spacer
(Dr3) Response Element
pdb|1KB4|B Chain B, Crystal Structure Of Vdr Dna-Binding Domain Bound To A
Canonical Direct Repeat With Three Base Pair Spacer
(Dr3) Response Element
pdb|1KB6|A Chain A, Crystal Structure Of Vdr Dna-Binding Domain Bound To Rat
Osteocalcin (Oc) Response Element
pdb|1KB6|B Chain B, Crystal Structure Of Vdr Dna-Binding Domain Bound To Rat
Osteocalcin (Oc) Response Element
Length = 110
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 52/76 (68%)
Query: 11 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRF 70
R+C VCGD A+GFH+ +CE CK FF+R+++ +TCP + DC I K R+ CQACR
Sbjct: 7 RICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQACRL 66
Query: 71 QKCLRKGMLKEGVRLD 86
++C+ GM+KE + D
Sbjct: 67 KRCVDIGMMKEFILTD 82
>pdb|1LAT|A Chain A, Glucocorticoid Receptor MutantDNA COMPLEX
pdb|1LAT|B Chain B, Glucocorticoid Receptor MutantDNA COMPLEX
Length = 82
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 48/70 (68%)
Query: 9 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQAC 68
P R CLVC D ASG HYGV +CE CKAFFKR ++G Y C C I+K RRK C AC
Sbjct: 3 PARPCLVCSDEASGCHYGVLTCEGCKAFFKRAVEGQHNYLCKYEGKCIIDKIRRKNCPAC 62
Query: 69 RFQKCLRKGM 78
R++KCL+ GM
Sbjct: 63 RYRKCLQAGM 72
>pdb|1GDC|A Chain A, Refined Solution Structure Of The Glucocorticoid
Receptor Dna-Binding Domain
Length = 72
Score = 86.3 bits (212), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 48/67 (71%)
Query: 12 LCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQ 71
LCLVC D ASG HYGV +C +CK FFKR ++G Y C NDC I+K RRK C ACR++
Sbjct: 1 LCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYR 60
Query: 72 KCLRKGM 78
KCL+ GM
Sbjct: 61 KCLQAGM 67
>pdb|3G9P|B Chain B, Gr Dna Binding Domain:sgk 16bp Complex-7
pdb|3G9P|A Chain A, Gr Dna Binding Domain:sgk 16bp Complex-7
pdb|3FYL|A Chain A, Gr Dna Binding Domain:cgt Complex
pdb|3FYL|B Chain B, Gr Dna Binding Domain:cgt Complex
pdb|3G6P|A Chain A, Gr Dna Binding Domain:fkbp5 Complex, 18bp
pdb|3G6P|B Chain B, Gr Dna Binding Domain:fkbp5 Complex, 18bp
pdb|3G6Q|B Chain B, Gr Dna Binding Domain:fkbp5 Binding Site Complex-9
pdb|3G6Q|A Chain A, Gr Dna Binding Domain:fkbp5 Binding Site Complex-9
pdb|3G6R|B Chain B, Gr Dna Binding Domain:fkbp5 Complex-52, 18bp
pdb|3G6R|A Chain A, Gr Dna Binding Domain:fkbp5 Complex-52, 18bp
pdb|3G6U|A Chain A, Gr Dna-Binding Domain:fkbp5 16bp Complex-49
pdb|3G6U|B Chain B, Gr Dna-Binding Domain:fkbp5 16bp Complex-49
pdb|3G8U|A Chain A, Dna Binding Domain:gilz 16bp Complex-5
pdb|3G8U|B Chain B, Dna Binding Domain:gilz 16bp Complex-5
pdb|3G8X|A Chain A, Gr Dna Binding Domain:gilz 16bp Complex-65
pdb|3G8X|B Chain B, Gr Dna Binding Domain:gilz 16bp Complex-65
pdb|3G97|B Chain B, Gr Dna-Binding Domain:gilz 16bp Complex-9
pdb|3G97|A Chain A, Gr Dna-Binding Domain:gilz 16bp Complex-9
pdb|3G99|A Chain A, Gr Dna Binding Domain:pal Complex-9
pdb|3G99|B Chain B, Gr Dna Binding Domain:pal Complex-9
pdb|3G9I|A Chain A, Gr Dna Binding Domain: Pal Complex-35
pdb|3G9I|B Chain B, Gr Dna Binding Domain: Pal Complex-35
pdb|3G9J|A Chain A, Gr Dna Binding Domain:pal, 18bp Complex-36
pdb|3G9J|B Chain B, Gr Dna Binding Domain:pal, 18bp Complex-36
pdb|3G9M|A Chain A, Gr Dna-Binding Domain:sgk 16bp Complex-44
pdb|3G9M|B Chain B, Gr Dna-Binding Domain:sgk 16bp Complex-44
pdb|3G9O|B Chain B, Gr Dna-Binding Domain:sgk 16bp Complex-9
pdb|3G9O|A Chain A, Gr Dna-Binding Domain:sgk 16bp Complex-9
Length = 90
Score = 86.3 bits (212), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 48/68 (70%)
Query: 11 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRF 70
+CLVC D ASG HYGV +C +CK FFKR ++G Y C NDC I+K RRK C ACR+
Sbjct: 3 HMCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRY 62
Query: 71 QKCLRKGM 78
+KCL+ GM
Sbjct: 63 RKCLQAGM 70
>pdb|2GDA|A Chain A, Refined Solution Structure Of The Glucocorticoid
Receptor Dna-Binding Domain
Length = 72
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 48/67 (71%)
Query: 12 LCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQ 71
LCLVC D ASG HYGV +C +CK FFKR ++G Y C NDC I+K RRK C ACR++
Sbjct: 1 LCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYR 60
Query: 72 KCLRKGM 78
KCL+ GM
Sbjct: 61 KCLQAGM 67
>pdb|1R4I|A Chain A, Crystal Structure Of Androgen Receptor Dna-Binding
Domain Bound To A Direct Repeat Response Element
pdb|1R4I|B Chain B, Crystal Structure Of Androgen Receptor Dna-Binding
Domain Bound To A Direct Repeat Response Element
Length = 105
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 48/70 (68%)
Query: 9 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQAC 68
P++ CL+CGD ASG HYG +C +CK FFKR +G +Y C + NDC I+K RRK C +C
Sbjct: 6 PQKTCLICGDEASGAHYGALTCGSCKVFFKRAAEGKQKYLCASRNDCTIDKFRRKNCPSC 65
Query: 69 RFQKCLRKGM 78
R +KC GM
Sbjct: 66 RLRKCYEAGM 75
>pdb|3DZU|D Chain D, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Bvt.13, 9-Cis Retinoic Acid And Ncoa2
Peptide
pdb|3DZY|D Chain D, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Rosiglitazone, 9-Cis Retinoic Acid And
Ncoa2 Peptide
pdb|3E00|D Chain D, Intact Ppar Gamma - Rxr Alpha Nuclear Receptor Complex On
Dna Bound With Gw9662, 9-Cis Retinoic Acid And Ncoa2
Peptide
Length = 419
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 13 CLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYT-CPASNDCEINKRRRKACQACRFQ 71
C VCGD ASGFHYGV +CE CK FF+RTI+ + Y C +C I+K+ R CQ CRFQ
Sbjct: 53 CRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRCDL--NCRIHKKSRNKCQYCRFQ 110
Query: 72 KCLRKGMLKEGVRLDRV 88
KCL GM +R R+
Sbjct: 111 KCLAVGMSHNAIRFGRM 127
>pdb|2EBL|A Chain A, Solution Structure Of The Zinc Finger, C4-type Domain Of
Human Coup Transcription Factor 1
Length = 89
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 53/72 (73%)
Query: 13 CLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQK 72
C+VCGD +SG HYG +CE CK+FFKR+++ N+ YTC A+ +C I++ R CQ CR +K
Sbjct: 10 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKK 69
Query: 73 CLRKGMLKEGVR 84
CL+ GM +E V+
Sbjct: 70 CLKVGMRREAVQ 81
>pdb|1RGD|A Chain A, Structure Refinement Of The Glucocorticoid Receptor-Dna
Binding Domain From Nmr Data By Relaxation Matrix
Calculations
Length = 71
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 47/66 (71%)
Query: 13 CLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQK 72
CLVC D ASG HYGV +C +CK FFKR ++G Y C NDC I+K RRK C ACR++K
Sbjct: 1 CLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRK 60
Query: 73 CLRKGM 78
CL+ GM
Sbjct: 61 CLQAGM 66
>pdb|2ENV|A Chain A, Solution Sturcture Of The C4-Type Zinc Finger Domain
From Human Peroxisome Proliferator-Activated Receptor
Delta
Length = 88
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 13 CLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQK 72
C VCGD ASGFHYGV +CE CK FF+RTI+ +EY C+I K+ R CQ CRFQK
Sbjct: 10 CRVCGDKASGFHYGVHACEGCKGFFRRTIRMKLEYE-KCERSCKIQKKNRNKCQYCRFQK 68
Query: 73 CLRKGMLKEGVRLD 86
CL GM +R
Sbjct: 69 CLALGMSHNAIRFG 82
>pdb|3CBB|A Chain A, Crystal Structure Of Hepatocyte Nuclear Factor 4alpha In
Complex With Dna: Diabetes Gene Product
pdb|3CBB|B Chain B, Crystal Structure Of Hepatocyte Nuclear Factor 4alpha In
Complex With Dna: Diabetes Gene Product
Length = 78
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 52/76 (68%)
Query: 12 LCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQ 71
LC +CGD A+G HYG +SC+ CK FF+R+++ N Y+C S C ++K +R C+ CR +
Sbjct: 2 LCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLK 61
Query: 72 KCLRKGMLKEGVRLDR 87
KC R GM KE V+ +R
Sbjct: 62 KCFRAGMKKEAVQNER 77
>pdb|3G6T|A Chain A, Gr Gamma Dna-Binding Domain:fkbp5 16bp Complex-34
pdb|3G6T|B Chain B, Gr Gamma Dna-Binding Domain:fkbp5 16bp Complex-34
Length = 91
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 12 LCLVCGDVASGFHYGVASCEACKAFFKRTIQG-NIEYTCPASNDCEINKRRRKACQACRF 70
+CLVC D ASG HYGV +C +CK FFKR ++G Y C NDC I+K RRK C ACR+
Sbjct: 4 MCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGRQHNYLCAGRNDCIIDKIRRKNCPACRY 63
Query: 71 QKCLRKGM 78
+KCL+ GM
Sbjct: 64 RKCLQAGM 71
>pdb|2NLL|B Chain B, Retinoid X Receptor-Thyroid Hormone Receptor Dna-Binding
Domain Heterodimer Bound To Thyroid Response Element
Dna
Length = 103
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 12 LCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIE--YTCPASNDCEINKRRRKACQACR 69
LC+VCGD A+G+HY +CE CK FF+RTIQ N+ Y+C C I+K R CQ CR
Sbjct: 3 LCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECR 62
Query: 70 FQKCLRKGMLKEGVRLDRVRGGRQK 94
F+KC+ GM + V D R ++K
Sbjct: 63 FKKCIYVGMATDLVLDDSKRLAKRK 87
>pdb|3M9E|A Chain A, Thyroid Hormone Beta Dna Binding Domain Homodimer With
Inverted Palindrome Tre
pdb|3M9E|B Chain B, Thyroid Hormone Beta Dna Binding Domain Homodimer With
Inverted Palindrome Tre
pdb|3M9E|E Chain E, Thyroid Hormone Beta Dna Binding Domain Homodimer With
Inverted Palindrome Tre
pdb|3M9E|F Chain F, Thyroid Hormone Beta Dna Binding Domain Homodimer With
Inverted Palindrome Tre
Length = 105
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 12 LCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIE--YTCPASNDCEINKRRRKACQACR 69
LC+VCGD A+G+HY +CE CK FF+RTIQ ++ Y+C C I+K R CQ CR
Sbjct: 5 LCVVCGDKATGYHYRCITCEGCKGFFRRTIQKSLHPSYSCKYEGKCIIDKVTRNQCQECR 64
Query: 70 FQKCLRKGMLKEGVRLDRVRGGRQK 94
F+KC+ GM + V D R ++K
Sbjct: 65 FKKCIYVGMATDLVLDDSKRLAKRK 89
>pdb|1R0N|B Chain B, Crystal Structure Of Heterodimeric Ecdsyone Receptor Dna
Binding Complex
pdb|1R0O|B Chain B, Crystal Structure Of The Heterodimeric Ecdysone Receptor
Dna-Binding Complex
Length = 109
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 45/72 (62%)
Query: 12 LCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQ 71
LCLVCGD ASG+HY +CE CK FF+R++ + Y C CE++ R+ CQ CR +
Sbjct: 8 LCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLK 67
Query: 72 KCLRKGMLKEGV 83
KCL GM E V
Sbjct: 68 KCLAVGMRPECV 79
>pdb|2HAN|B Chain B, Structural Basis Of Heterodimeric Ecdysteroid Receptor
Interaction With Natural Response Element Hsp27 Gene
Promoter
Length = 119
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 45/72 (62%)
Query: 12 LCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQ 71
LCLVCGD ASG+HY +CE CK FF+R++ + Y C CE++ R+ CQ CR +
Sbjct: 10 LCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLK 69
Query: 72 KCLRKGMLKEGV 83
KCL GM E V
Sbjct: 70 KCLAVGMRPECV 81
>pdb|3D24|A Chain A, Crystal Structure Of Ligand-Binding Domain Of Estrogen-
Related Receptor Alpha (Erralpha) In Complex With The
Peroxisome Proliferators-Activated Receptor Coactivator-
1alpha Box3 Peptide (Pgc-1alpha)
pdb|3D24|C Chain C, Crystal Structure Of Ligand-Binding Domain Of Estrogen-
Related Receptor Alpha (Erralpha) In Complex With The
Peroxisome Proliferators-Activated Receptor Coactivator-
1alpha Box3 Peptide (Pgc-1alpha)
Length = 253
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 125 SCTQVIDRLEHVAVSKEEYYFLKALVLANSD-VKLDEFSSLKKFRNSILSSL 175
+ Q++ RL+ + + +EEY LKAL LANSD V +++ ++++ R ++ +L
Sbjct: 138 ALLQLVRRLQALRLEREEYVLLKALALANSDSVHIEDAEAVEQLREALHEAL 189
>pdb|1XB7|A Chain A, X-Ray Structure Of Erralpha Lbd In Complex With A Pgc-
1alpha Peptide At 2.5a Resolution
Length = 247
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 125 SCTQVIDRLEHVAVSKEEYYFLKALVLANSD-VKLDEFSSLKKFRNSILSSL 175
+ Q++ RL+ + + +EEY LKAL LANSD V +++ ++++ R ++ +L
Sbjct: 132 ALLQLVRRLQALRLEREEYVLLKALALANSDSVHIEDAEAVEQLREALHEAL 183
>pdb|3K6P|A Chain A, Estrogen Related Receptor Alpha In Complex With An Ether
Based Ligand
Length = 248
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 125 SCTQVIDRLEHVAVSKEEYYFLKALVLANSD-VKLDEFSSLKKFRNSILSSL 175
+ Q++ RL+ + + +EEY LKAL LANSD V +++ ++++ R ++ +L
Sbjct: 133 ALLQLVRRLQALRLEREEYVLLKALALANSDSVHIEDAEAVEQLREALHEAL 184
>pdb|2PJL|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Alpha
In Complex With A Synthetic Inverse Agonist Reveals Its
Novel Molecular Mechanism
pdb|2PJL|B Chain B, Crystal Structure Of Human Estrogen-Related Receptor Alpha
In Complex With A Synthetic Inverse Agonist Reveals Its
Novel Molecular Mechanism
Length = 247
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 125 SCTQVIDRLEHVAVSKEEYYFLKALVLANSD-VKLDEFSSLKKFRNSILSSL 175
+ Q++ RL+ + + +EEY LKAL LANSD V +++ ++++ R ++ +L
Sbjct: 132 ALLQLVRRLQALRLEREEYVLLKALALANSDSVHIEDAEAVEQLREALHEAL 183
>pdb|2E2R|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Complex With Bisphenol A
pdb|2ZAS|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Complex With 4-Alpha-Cumylphenol,
A Bisphenol A Derivative
pdb|2ZBS|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Apo Form
pdb|2ZKC|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Complex With Bisphenol Z
Length = 244
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 125 SCTQVIDRLEHVAVSKEEYYFLKALVLANSD-VKLDEFSSLKKFRNSILSSLGD 177
+ Q++ + + + + KEE+ LKA+ LANSD + +++ +++K ++ + +L D
Sbjct: 133 AILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQD 186
>pdb|1VJB|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With 4-
Hydroxytamoxifen
pdb|1VJB|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With 4-
Hydroxytamoxifen
pdb|1TFC|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With A
Steroid Receptor Coactivator-1 Peptide
pdb|1TFC|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With A
Steroid Receptor Coactivator-1 Peptide
pdb|2P7A|A Chain A, Crystal Structure Of Estrogen Related Receptor G In
Complex With 3-Methyl Phenol
pdb|2P7G|A Chain A, X-Ray Structure Of Estrogen Related Receptor G In Complex
With Bisphenol A.
pdb|2P7Z|A Chain A, Estrogen Related Receptor Gamma In Complex With 4-Hydroxy-
Tamoxifen
Length = 251
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 125 SCTQVIDRLEHVAVSKEEYYFLKALVLANSD-VKLDEFSSLKKFRNSILSSLGD 177
+ Q++ + + + + KEE+ LKA+ LANSD + +++ +++K ++ + +L D
Sbjct: 141 AILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQD 194
>pdb|1S9Q|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
4-Hydroxytamoxifen
pdb|1S9Q|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
4-Hydroxytamoxifen
Length = 251
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 125 SCTQVIDRLEHVAVSKEEYYFLKALVLANSD-VKLDEFSSLKKFRNSILSSLGD 177
+ Q++ + + + + KEE+ LKA+ LANSD + +++ +++K ++ + +L D
Sbjct: 141 AILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQD 194
>pdb|1KV6|A Chain A, X-Ray Structure Of The Orphan Nuclear Receptor Err3
Ligand- Binding Domain In The Constitutively Active
Conformation
pdb|1KV6|B Chain B, X-Ray Structure Of The Orphan Nuclear Receptor Err3
Ligand- Binding Domain In The Constitutively Active
Conformation
pdb|2GP7|A Chain A, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GP7|B Chain B, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GP7|C Chain C, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GP7|D Chain D, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GPO|A Chain A, Estrogen Related Receptor-Gamma Ligand Binding Domain
Complexed With A Synthetic Peptide From Rip140
pdb|2GPP|A Chain A, Estrogen Related Receptor-Gamma Ligand Binding Domain
Complexed With A Rip140 Peptide And Synthetic Ligand
Gsk4716
pdb|2GPP|B Chain B, Estrogen Related Receptor-Gamma Ligand Binding Domain
Complexed With A Rip140 Peptide And Synthetic Ligand
Gsk4716
pdb|2GPU|A Chain A, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen
pdb|2GPV|A Chain A, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|B Chain B, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|C Chain C, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|D Chain D, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|E Chain E, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|F Chain F, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
Length = 230
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 125 SCTQVIDRLEHVAVSKEEYYFLKALVLANSD-VKLDEFSSLKKFRNSILSSLGD 177
+ Q++ + + + + KEE+ LKA+ LANSD + +++ +++K ++ + +L D
Sbjct: 120 AILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQD 173
>pdb|1S9P|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
pdb|1S9P|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
pdb|1S9P|C Chain C, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
pdb|1S9P|D Chain D, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
Length = 227
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 125 SCTQVIDRLEHVAVSKEEYYFLKALVLANSD-VKLDEFSSLKKFRNSILSSLGD 177
+ Q++ + + + + KEE+ LKA+ LANSD + +++ +++K ++ + +L D
Sbjct: 117 AILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQD 170
>pdb|2EWP|A Chain A, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|B Chain B, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|C Chain C, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|D Chain D, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|E Chain E, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
Length = 226
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 125 SCTQVIDRLEHVAVSKEEYYFLKALVLANSD-VKLDEFSSLKKFRNSILSSLGD 177
+ Q++ + + + + KEE+ LKA+ LANSD + +++ +++K ++ + +L D
Sbjct: 116 AILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQD 169
>pdb|3FS1|A Chain A, Crystal Structure Of Hnf4a Lbd In Complex With The Ligand
And The Coactivator Pgc-1a Fragment
Length = 230
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 113 PSLEDLERNTEISCTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSI 171
P L ++ R + +++ + + + EY +LKA++ + D K L + +K+ R+ +
Sbjct: 109 PELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKRLRSQV 168
Query: 172 LSSLGDCI 179
SL D I
Sbjct: 169 QVSLEDYI 176
>pdb|1PZL|A Chain A, Crystal Structure Of Hnf4a Lbd In Complex With The Ligand
And The Coactivator Src-1 Peptide
Length = 237
Score = 30.0 bits (66), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 113 PSLEDLERNTEISCTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSI 171
P L ++ R + +++ + + + EY +LKA++ + D K L + +K+ R+ +
Sbjct: 115 PELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKRLRSQV 174
Query: 172 LSSLGDCI 179
SL D I
Sbjct: 175 QVSLEDYI 182
>pdb|1M7W|A Chain A, Hnf4a Ligand Binding Domain With Bound Fatty Acid
pdb|1M7W|B Chain B, Hnf4a Ligand Binding Domain With Bound Fatty Acid
pdb|1M7W|C Chain C, Hnf4a Ligand Binding Domain With Bound Fatty Acid
pdb|1M7W|D Chain D, Hnf4a Ligand Binding Domain With Bound Fatty Acid
Length = 250
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 113 PSLEDLERNTEISCTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSI 171
P L ++ R + +++ + + + EY LKA++ + D K L + +K+ R+ +
Sbjct: 115 PELAEMSRVSIRILDELVLPFQELQIDDNEYACLKAIIFFDPDAKGLSDPGKIKRLRSQV 174
Query: 172 LSSLGDCI 179
SL D I
Sbjct: 175 QVSLEDYI 182
>pdb|2EXU|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Transcription Elongation Factors Spt4-Spt5ngn Domain
Length = 200
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 11 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPA 51
R C++CG V + + C C+ F+ +E T P+
Sbjct: 5 RACMLCGIVQTTNEFNRDGCPNCQGIFEEAGVSTMECTSPS 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,296,415
Number of Sequences: 62578
Number of extensions: 201530
Number of successful extensions: 423
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 363
Number of HSP's gapped (non-prelim): 62
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)