Query psy16825
Match_columns 183
No_of_seqs 142 out of 1246
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 23:01:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16825.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16825hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dzy_A Retinoic acid receptor 100.0 2.5E-44 8.4E-49 304.1 10.2 173 10-182 137-412 (467)
2 3dzy_D Peroxisome proliferator 100.0 3.1E-43 1.1E-47 294.1 13.8 172 10-183 50-367 (419)
3 2ebl_A COUP transcription fact 100.0 2.5E-37 8.7E-42 204.1 4.0 85 6-90 3-87 (89)
4 1dsz_B RXR-alpha, retinoic aci 100.0 4.9E-37 1.7E-41 201.2 2.2 82 8-89 3-84 (85)
5 3cbb_A HNF-4-alpha, hepatocyte 100.0 1.2E-36 4.1E-41 196.4 3.2 77 12-88 2-78 (78)
6 1ynw_B Retinoic acid receptor 100.0 1.5E-36 5.1E-41 204.2 3.5 85 10-94 3-87 (99)
7 1lo1_A Steroid hormone recepto 100.0 8.3E-37 2.8E-41 205.1 2.2 89 8-96 2-90 (98)
8 2han_A Protein ultraspiracle; 100.0 1.2E-36 4E-41 202.6 2.7 84 9-92 9-92 (93)
9 1dsz_A RAR-alpha, retinoic aci 100.0 2.2E-36 7.6E-41 198.7 3.3 82 10-91 4-85 (86)
10 1cit_A NGFI-B, protein (orphan 100.0 2.9E-36 9.9E-41 199.2 3.7 84 11-94 1-84 (89)
11 2a66_A Orphan nuclear receptor 100.0 4E-36 1.4E-40 206.4 2.8 90 5-94 4-93 (113)
12 1hcq_A Protein (estrogen recep 100.0 7.8E-36 2.7E-40 195.1 3.6 79 10-88 4-82 (84)
13 1a6y_A Orphan nuclear receptor 100.0 6.9E-36 2.3E-40 199.3 3.3 84 10-93 7-91 (94)
14 2han_B Ecdysone receptor; tran 100.0 2.4E-35 8E-40 204.9 2.6 83 8-90 6-88 (119)
15 4hn5_A Glucocorticoid receptor 100.0 4.7E-35 1.6E-39 202.0 3.3 87 6-92 25-111 (117)
16 1kb2_A Vitamin D3 receptor; VD 100.0 4E-35 1.4E-39 200.9 1.3 82 9-90 5-86 (110)
17 3g9m_A Glucocorticoid receptor 100.0 8.2E-35 2.8E-39 193.2 2.2 82 11-92 3-84 (90)
18 1r4i_A Androgen receptor; AR, 100.0 1.8E-34 6.1E-39 195.9 2.8 83 8-90 5-87 (105)
19 2nll_B Protein (thyroid hormon 100.0 8.1E-35 2.8E-39 197.3 1.1 83 11-93 2-86 (103)
20 2lze_A A primordial catalytic 99.9 2.5E-22 8.6E-27 131.2 3.8 69 15-85 9-77 (87)
21 1lbd_A RXR_LBD, retinoid X rec 99.7 2.3E-18 8E-23 136.8 6.6 56 127-182 171-227 (282)
22 1xdk_B RAR-beta, retinoic acid 99.5 4.5E-14 1.5E-18 113.2 6.6 57 126-182 157-214 (303)
23 3vi8_A Peroxisome proliferator 99.4 1.6E-13 5.6E-18 108.4 6.5 75 109-183 96-221 (273)
24 1ovl_A Orphan nuclear receptor 99.4 3.5E-13 1.2E-17 106.3 6.4 57 126-182 159-215 (271)
25 3cqv_A Nuclear receptor subfam 99.3 1.3E-12 4.4E-17 98.5 5.7 57 126-182 106-163 (199)
26 1fcy_A RAR-gamma-1, retinoic a 99.3 2.8E-12 9.7E-17 99.1 6.7 57 126-182 130-187 (236)
27 3v3e_B Nuclear receptor subfam 99.3 2.1E-12 7.1E-17 101.2 5.7 73 109-181 72-192 (257)
28 3l0l_A Nuclear receptor ROR-ga 99.3 2.3E-12 7.9E-17 100.4 5.8 57 126-182 141-198 (248)
29 2e2r_A Estrogen-related recept 99.3 4.4E-12 1.5E-16 98.6 6.6 57 126-182 134-191 (244)
30 3ltx_A Estrogen receptor; cons 99.3 4.6E-12 1.6E-16 98.4 6.7 57 126-182 123-180 (243)
31 3u9q_A Peroxisome proliferator 99.3 4.9E-12 1.7E-16 99.7 6.4 56 127-182 161-217 (269)
32 3n00_A REV-ERBA-alpha; reverba 99.3 3.6E-12 1.2E-16 99.2 5.5 57 126-182 151-208 (245)
33 3kmr_A Retinoic acid receptor 99.3 6E-12 2E-16 99.1 6.7 56 127-182 155-211 (266)
34 3k6p_A Steroid hormone recepto 99.3 5.5E-12 1.9E-16 98.3 6.1 57 126-182 134-191 (248)
35 2iz2_A FTZ-F1 alpha, nuclear h 99.3 6.4E-12 2.2E-16 97.6 6.4 58 125-182 133-191 (243)
36 1n83_A Nuclear receptor ROR-al 99.3 5.1E-12 1.7E-16 99.7 5.7 57 126-182 150-207 (270)
37 2hc4_A Vitamin D receptor; alp 99.3 9E-12 3.1E-16 99.7 7.0 56 127-182 191-247 (302)
38 1xvp_B Orphan nuclear receptor 99.3 4.3E-12 1.5E-16 98.6 5.0 56 126-181 140-196 (246)
39 3cjw_A COUP transcription fact 99.2 6.2E-12 2.1E-16 97.6 5.7 56 127-182 126-182 (244)
40 1osh_A BIle acid receptor; nuc 99.2 8.6E-12 3E-16 96.1 6.4 57 126-182 125-182 (232)
41 3b0t_A Vitamin D3 receptor; nu 99.2 6.9E-12 2.4E-16 97.9 5.8 57 126-182 144-201 (254)
42 3p0u_A Nuclear receptor subfam 99.2 8.8E-12 3E-16 97.1 6.3 57 126-182 128-185 (249)
43 1nq7_A Nuclear receptor ROR-be 99.2 4.7E-12 1.6E-16 98.4 4.6 57 126-182 135-192 (244)
44 2nxx_A Ultraspiracle (USP, NR2 99.2 7.4E-12 2.5E-16 96.6 5.5 57 126-182 124-181 (235)
45 3ilz_A Thyroid hormone recepto 99.2 5.7E-12 1.9E-16 99.2 4.8 57 126-182 156-213 (267)
46 3ipq_A Oxysterols receptor LXR 99.2 1.1E-11 3.6E-16 98.5 5.5 57 126-182 175-232 (283)
47 2o4j_A Vitamin D3 receptor; nu 99.2 1.1E-11 3.8E-16 98.8 5.6 56 127-182 148-204 (292)
48 3mnp_A Glucocorticoid receptor 99.2 1.2E-11 4E-16 97.1 5.6 57 126-182 130-188 (261)
49 3vhv_A Mineralocorticoid recep 99.2 1.1E-11 3.8E-16 97.2 5.3 57 126-182 128-186 (260)
50 1ymt_A Steroidogenic factor 1; 99.2 1.3E-11 4.4E-16 95.9 5.3 57 126-182 136-193 (246)
51 3plz_A FTZ-F1 related protein; 99.2 1.5E-11 5E-16 96.4 5.6 56 127-182 148-204 (257)
52 1pdu_A DHR38, nuclear hormone 99.2 2.1E-11 7E-16 94.8 6.1 55 126-181 132-187 (244)
53 1t7r_A Androgen receptor; nucl 99.2 1.8E-11 6.2E-16 96.4 5.7 57 126-182 137-195 (269)
54 2r40_D Ecdysone receptor, 20-h 99.2 1.9E-11 6.4E-16 96.2 5.6 56 126-182 154-210 (266)
55 3tx7_B Nuclear receptor subfam 99.2 2.8E-11 9.7E-16 98.7 6.4 56 127-182 243-299 (352)
56 1nrl_A Orphan nuclear receptor 99.2 1.2E-11 4.2E-16 99.5 4.0 57 126-182 205-262 (316)
57 1sqn_A PR, progesterone recept 99.2 2.5E-11 8.6E-16 95.2 5.2 56 126-181 129-186 (261)
58 2p1t_A Retinoic acid receptor 99.2 4.1E-11 1.4E-15 92.7 6.3 56 127-182 129-185 (240)
59 3vhu_A Mineralocorticoid recep 99.2 2.4E-11 8.4E-16 96.9 5.0 57 126-182 162-220 (294)
60 2nxx_E Ecdysone receptor (ECR, 99.2 4.4E-11 1.5E-15 93.1 6.3 56 126-182 138-194 (248)
61 1z5x_E Ecdysone receptor ligan 99.1 6.1E-11 2.1E-15 95.2 6.1 56 126-182 202-258 (310)
62 2ocf_A Estrogen receptor; estr 99.1 3.9E-11 1.3E-15 95.9 4.4 55 127-181 132-195 (298)
63 1xpc_A Estrogen receptor; nucl 99.1 2.6E-11 9E-16 94.3 2.9 56 127-182 123-187 (248)
64 3up3_A Acedaf-12; ligand bindi 99.1 4.2E-11 1.4E-15 93.0 2.8 56 126-181 133-192 (243)
65 1yye_A ER-beta, estrogen recep 99.1 1.5E-10 5E-15 91.2 5.7 55 127-181 119-181 (268)
66 3oll_A Estrogen receptor beta; 99.0 3E-10 1E-14 87.8 6.2 56 126-181 120-183 (240)
67 1pzl_A Hepatocyte nuclear fact 99.0 2.5E-10 8.4E-15 87.9 4.8 57 126-182 128-185 (237)
68 3f5c_B Nuclear receptor subfam 99.0 5.3E-10 1.8E-14 88.0 6.7 59 124-182 157-216 (268)
69 1l2j_A Estrogen receptor beta; 99.0 3.2E-10 1.1E-14 89.4 5.3 55 127-181 147-209 (271)
70 1g2n_A Ultraspiracle protein; 99.0 7.1E-10 2.4E-14 87.0 6.5 58 125-182 146-204 (264)
71 1hg4_A Ultraspiracle; nuclear 98.9 1.2E-09 4E-14 86.3 6.6 57 126-182 161-218 (279)
72 3gyt_A Nuclear hormone recepto 98.9 8.7E-10 3E-14 85.6 4.5 47 136-182 143-193 (244)
73 2yql_A PHD finger protein 21A; 84.7 0.72 2.5E-05 26.6 2.7 55 2-70 1-55 (56)
74 2ku3_A Bromodomain-containing 79.9 0.84 2.9E-05 27.9 1.7 56 6-72 12-67 (71)
75 2yt5_A Metal-response element- 79.6 1 3.5E-05 26.8 2.0 57 8-72 4-62 (66)
76 2crw_A ARF GAP 3, ADP-ribosyla 79.3 0.84 2.9E-05 32.2 1.8 32 9-40 28-62 (149)
77 2iqj_A Stromal membrane-associ 78.3 0.61 2.1E-05 32.3 0.8 31 10-40 27-60 (134)
78 3dwd_A ADP-ribosylation factor 78.1 1 3.5E-05 31.6 1.9 32 9-40 37-71 (147)
79 2olm_A Nucleoporin-like protei 76.7 0.76 2.6E-05 32.1 0.9 31 10-40 25-58 (140)
80 2crr_A Stromal membrane-associ 75.9 0.98 3.4E-05 31.5 1.3 31 10-40 29-62 (141)
81 3dfx_A Trans-acting T-cell-spe 75.4 2.3 8E-05 25.3 2.7 33 9-41 6-42 (63)
82 2vpb_A Hpygo1, pygopus homolog 75.0 0.77 2.6E-05 27.6 0.5 33 7-40 5-38 (65)
83 2owa_A Arfgap-like finger doma 74.8 0.77 2.6E-05 32.0 0.5 31 10-40 36-69 (138)
84 2p57_A GTPase-activating prote 74.4 0.87 3E-05 31.9 0.7 31 10-40 37-70 (144)
85 1we9_A PHD finger family prote 74.0 2 6.8E-05 25.3 2.2 54 10-72 6-59 (64)
86 2l43_A N-teminal domain from h 72.4 1.6 5.6E-05 27.7 1.6 52 10-72 25-76 (88)
87 3sub_A ADP-ribosylation factor 69.9 1.5 5.1E-05 31.3 1.1 31 10-40 22-55 (163)
88 2vut_I AREA, nitrogen regulato 66.3 2.8 9.6E-05 22.9 1.5 30 11-40 2-35 (43)
89 1gnf_A Transcription factor GA 66.0 4.4 0.00015 22.5 2.3 31 10-40 4-38 (46)
90 3o47_A ADP-ribosylation factor 64.2 2.9 9.8E-05 33.0 1.8 32 9-40 36-70 (329)
91 1xwh_A Autoimmune regulator; P 63.6 4.4 0.00015 24.1 2.2 49 10-72 8-56 (66)
92 1mm2_A MI2-beta; PHD, zinc fin 62.8 11 0.00036 22.0 3.7 49 9-71 8-56 (61)
93 4gat_A Nitrogen regulatory pro 61.0 5.2 0.00018 24.0 2.1 33 8-40 7-43 (66)
94 1d4u_A Nucleotide excision rep 60.7 3 0.0001 27.8 1.1 26 10-35 5-34 (111)
95 2xb1_A Pygopus homolog 2, B-ce 60.0 2.2 7.4E-05 28.1 0.3 54 10-72 3-62 (105)
96 2lri_C Autoimmune regulator; Z 58.1 4.7 0.00016 24.1 1.6 46 10-69 12-57 (66)
97 2e6r_A Jumonji/ARID domain-con 58.0 11 0.00037 24.0 3.5 53 11-74 17-69 (92)
98 2kae_A GATA-type transcription 57.7 6 0.00021 24.1 2.0 30 10-40 8-43 (71)
99 2puy_A PHD finger protein 21A; 56.9 7.1 0.00024 22.6 2.3 48 11-72 6-53 (60)
100 1wev_A Riken cDNA 1110020M19; 53.9 5.7 0.0002 25.1 1.6 54 11-72 17-73 (88)
101 2ro1_A Transcription intermedi 53.5 9.4 0.00032 27.7 2.9 47 11-71 3-49 (189)
102 2lbm_A Transcriptional regulat 52.8 7.2 0.00025 27.1 2.0 32 9-40 13-53 (142)
103 3lju_X ARF-GAP with dual PH do 52.6 4.3 0.00015 33.0 1.0 32 9-40 33-67 (386)
104 3jue_A Arfgap with coiled-coil 51.7 6.4 0.00022 31.6 1.9 31 10-40 45-78 (368)
105 2yqp_A Probable ATP-dependent 51.6 6.7 0.00023 22.7 1.4 16 11-32 20-35 (60)
106 1weo_A Cellulose synthase, cat 51.5 11 0.00036 24.1 2.5 12 9-20 15-26 (93)
107 3o36_A Transcription intermedi 50.4 10 0.00034 27.2 2.6 48 11-72 5-52 (184)
108 2yqq_A Zinc finger HIT domain- 49.1 11 0.00036 21.9 2.0 26 4-35 6-31 (56)
109 1lv3_A Hypothetical protein YA 48.6 4.5 0.00015 24.5 0.4 30 5-34 4-36 (68)
110 2cs3_A Protein C14ORF4, MY039 47.2 21 0.00074 22.2 3.3 52 8-59 13-71 (93)
111 3u5n_A E3 ubiquitin-protein li 47.0 9 0.00031 28.1 1.9 48 10-71 7-54 (207)
112 3j21_g 50S ribosomal protein L 46.7 6 0.00021 22.4 0.7 21 11-34 15-35 (51)
113 2b0o_E UPLC1; arfgap, structur 45.5 9.4 0.00032 29.4 1.9 32 9-40 41-75 (301)
114 2pv0_B DNA (cytosine-5)-methyl 43.8 15 0.0005 30.0 2.8 32 11-42 51-85 (386)
115 1fp0_A KAP-1 corepressor; PHD 43.2 11 0.00037 23.9 1.6 47 11-71 26-72 (88)
116 2yrc_A Protein transport prote 43.1 11 0.00036 22.0 1.4 18 20-37 2-21 (59)
117 2e2z_A TIM15; protein import, 40.1 3.4 0.00012 26.9 -1.2 26 12-37 15-48 (100)
118 2k16_A Transcription initiatio 39.3 7 0.00024 23.7 0.2 28 11-40 19-46 (75)
119 3j20_P 30S ribosomal protein S 39.1 14 0.00049 21.3 1.5 23 11-33 19-42 (56)
120 1dcq_A PYK2-associated protein 36.0 15 0.0005 27.9 1.6 32 9-40 16-50 (278)
121 3lqh_A Histone-lysine N-methyl 35.9 8.8 0.0003 27.8 0.3 31 10-40 2-34 (183)
122 4hc9_A Trans-acting T-cell-spe 35.1 26 0.00091 23.2 2.6 33 10-42 59-95 (115)
123 3jyw_9 60S ribosomal protein L 34.5 19 0.00066 21.9 1.6 24 11-34 27-51 (72)
124 2eel_A Cell death activator CI 33.9 14 0.00048 23.6 1.0 27 2-29 1-27 (91)
125 3iz6_N 40S ribosomal protein S 33.7 16 0.00054 21.1 1.1 23 11-33 19-42 (56)
126 2lv9_A Histone-lysine N-methyl 33.2 41 0.0014 21.4 3.2 46 12-70 30-75 (98)
127 1dl6_A Transcription factor II 33.0 38 0.0013 19.4 2.8 25 10-34 11-37 (58)
128 3lvq_E ARF-GAP with SH3 domain 32.9 17 0.00058 30.0 1.6 32 9-40 22-56 (497)
129 1x5v_A PCFK1; inhibitory cysti 32.0 6.7 0.00023 19.5 -0.6 23 52-74 6-30 (34)
130 2ri7_A Nucleosome-remodeling f 31.1 5.8 0.0002 28.2 -1.3 53 10-73 8-61 (174)
131 3a1b_A DNA (cytosine-5)-methyl 31.0 19 0.00067 25.4 1.4 33 10-42 36-71 (159)
132 3ql9_A Transcriptional regulat 30.6 17 0.00056 24.8 1.0 30 11-40 9-47 (129)
133 2fqh_A Hypothetical protein TA 30.4 23 0.00079 22.8 1.6 31 12-42 19-55 (109)
134 3ask_A E3 ubiquitin-protein li 29.7 26 0.00091 26.2 2.1 48 12-69 176-223 (226)
135 1f62_A Transcription factor WS 29.7 19 0.00064 19.8 1.0 27 12-40 2-28 (51)
136 3izc_m 60S ribosomal protein R 29.5 20 0.00067 22.9 1.1 24 11-34 37-61 (92)
137 2k4x_A 30S ribosomal protein S 29.4 23 0.0008 20.2 1.4 25 10-34 18-43 (55)
138 2l5u_A Chromodomain-helicase-D 29.1 26 0.00089 20.2 1.6 48 10-71 11-58 (61)
139 2jw6_A Deformed epidermal auto 28.8 17 0.00059 20.0 0.7 24 6-35 5-28 (52)
140 2od1_A Protein CBFA2T1; zinc f 28.6 23 0.00077 20.4 1.2 23 7-35 10-32 (60)
141 3iz5_m 60S ribosomal protein L 27.8 21 0.00072 22.8 1.1 24 11-34 37-61 (92)
142 3u5c_d S36, YS29, 40S ribosoma 27.3 24 0.00083 20.3 1.2 23 11-33 19-42 (56)
143 3asl_A E3 ubiquitin-protein li 27.0 41 0.0014 20.0 2.2 27 12-40 20-46 (70)
144 1wep_A PHF8; structural genomi 26.7 24 0.00081 21.5 1.1 52 11-72 13-64 (79)
145 1ffk_W Ribosomal protein L37AE 25.5 22 0.00077 21.6 0.8 25 10-34 27-52 (73)
146 1g2y_A Hepatocyte nuclear fact 25.3 63 0.0021 16.2 2.3 16 162-177 3-18 (32)
147 2xzm_N RPS29E; ribosome, trans 25.1 35 0.0012 19.5 1.6 23 11-33 18-41 (55)
148 1wen_A Inhibitor of growth fam 24.7 47 0.0016 19.8 2.2 24 10-37 16-42 (71)
149 3o70_A PHD finger protein 13; 24.4 33 0.0011 20.3 1.5 28 10-40 19-46 (68)
150 3j21_i 50S ribosomal protein L 23.9 23 0.00079 22.2 0.7 24 11-34 36-60 (83)
151 1zbd_B Rabphilin-3A; G protein 23.8 33 0.0011 23.4 1.6 53 9-76 54-112 (134)
152 2jmi_A Protein YNG1, ING1 homo 23.2 34 0.0011 21.7 1.4 45 10-69 26-74 (90)
153 1wem_A Death associated transc 23.1 48 0.0016 19.8 2.1 26 12-40 18-43 (76)
154 2jne_A Hypothetical protein YF 22.6 19 0.00066 23.2 0.1 31 9-40 31-61 (101)
155 2hlg_A Fruit-specific protein; 21.8 15 0.0005 19.1 -0.5 21 48-72 5-25 (39)
156 2ysm_A Myeloid/lymphoid or mix 21.8 78 0.0027 20.3 3.1 29 10-40 7-35 (111)
157 4a17_Y RPL37A, 60S ribosomal p 21.6 19 0.00064 23.5 -0.1 23 12-34 38-61 (103)
158 2enz_A NPKC-theta, protein kin 20.5 38 0.0013 19.6 1.2 24 12-35 25-48 (65)
159 2ll1_A U1-TRTX-SP1A; toxin; NM 20.3 10 0.00035 18.5 -1.2 8 67-74 24-31 (33)
No 1
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=100.00 E-value=2.5e-44 Score=304.06 Aligned_cols=173 Identities=36% Similarity=0.687 Sum_probs=145.9
Q ss_pred CCcccccCCCCcccccccccccchhhhhhccccCCceeecCCCCCccccccccccccchhhhHHhhhcccccceeecccc
Q psy16825 10 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVR 89 (183)
Q Consensus 10 ~~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~CR~~KCl~~GM~~~~v~~~r~~ 89 (183)
...|.|||++++|+||||.+|+|||+||||+|.++..|.|+.+++|.+++..|+.||+|||+||+++||++++||.+|++
T Consensus 137 ~~~C~VCg~~a~g~hygv~sC~~Ck~FFrR~~~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~r~~ 216 (467)
T 3dzy_A 137 KHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQR 216 (467)
T ss_dssp CEECTTTSSEECSEETTEECCHHHHHHHHHHHHTTCCCCCSSSSCCCCCSSSSSSCHHHHHHHHHHTTCCGGGCCCCSCC
T ss_pred CCcceeCCCCCCCCcCCCcchhhhhHhccccccCCCceeCCCCCCCCCCcccccccccchhhhhhhccccchhhhccccc
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccccccCCCC--CCC-------------------C---C-----------CC-----------------CCCCCCCccc
Q psy16825 90 GGRQKYRRNPD--LLS-------------------Q---Q-----------WP-----------------PNKSIPSLED 117 (183)
Q Consensus 90 ~~~~~~~~~~~--~~~-------------------~---~-----------~~-----------------~~k~iP~f~~ 117 (183)
...+....... ... . . .+ +.+.+|+|.+
T Consensus 217 ~k~r~~~~~~~~~~~~~~~~~~~ll~a~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~e~a~~~L~~vVeWAK~iP~F~~ 296 (467)
T 3dzy_A 217 GKDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSE 296 (467)
T ss_dssp CCCCSCSSCTTSTTCSCSSCHHHHHHHHHC----------------------CCTTHHHHHHHHHHHHHHHHHHSTTSTT
T ss_pred cccccccccccccccCCCCchhhhhhhhhhhcccchhhhhhcccCCCCcccchHHHHHHHHHHHHHHHHHHHHhCcchhc
Confidence 64432110000 000 0 0 00 0166899999
Q ss_pred cccccc--------------------------------------------------chhhhhhhhchhcccChhHHHHHH
Q psy16825 118 LERNTE--------------------------------------------------ISCTQVIDRLEHVAVSKEEYYFLK 147 (183)
Q Consensus 118 L~~~dq--------------------------------------------------~~~~~lv~~~~~l~~~~~E~~~lk 147 (183)
|+.+|| ..+.+++.+|++|++|.+||++|+
T Consensus 297 L~~~DQi~LLK~~w~elliL~~a~rs~~~~~~~ll~~g~~i~~~~~~~~~~~~~~~~il~~lv~~l~~L~ld~~E~~lLk 376 (467)
T 3dzy_A 297 LPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLR 376 (467)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTSSSTTBCCCSSSCCCBTHHHHTTTCHHHHHHHHHHTHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHHHhHHHHHHHHHHHHHhccCCCceEecCCceechhhhhhhcchHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999 123478999999999999999999
Q ss_pred HHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 148 ALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 148 ai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
||+||+||+. |++...|+++|++++.+|.+|+...
T Consensus 377 AIvLfnpd~~gL~~~~~Ve~lQe~~~~aL~~Y~~~~ 412 (467)
T 3dzy_A 377 AIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHK 412 (467)
T ss_dssp HHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999986 9999999999999999999999654
No 2
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=100.00 E-value=3.1e-43 Score=294.12 Aligned_cols=172 Identities=30% Similarity=0.577 Sum_probs=143.2
Q ss_pred CCcccccCCCCcccccccccccchhhhhhccccCCceee-cCCCCCccccccccccccchhhhHHhhhcccccceeeccc
Q psy16825 10 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYT-CPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRV 88 (183)
Q Consensus 10 ~~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~-C~~~~~C~~~k~~r~~C~~CR~~KCl~~GM~~~~v~~~r~ 88 (183)
...|.|||++++|+||||.+|+|||+||||+|..+..|. | .++|.+++..|+.|++|||+||+++||++++||.+|+
T Consensus 50 ~~~C~vC~~~~~g~hygv~~C~~C~~FFrR~~~~~~~~~~c--~~~C~~~~~~r~~C~~CR~~kCl~~GM~~~~vq~~R~ 127 (419)
T 3dzy_D 50 AIECRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRC--DLNCRIHKKSRNKCQYCRFQKCLAVGMSHNAIRFGRM 127 (419)
T ss_dssp CCCCSSSCSCCCSBCSSSBCCHHHHHHHHHHHTTTCCCCCC--CSCCCCCTTGGGTCHHHHHHHHHHTTCCGGGCCCSCC
T ss_pred CCcCeECCCcCCCCccCcccchhhhHHHccchhcccccccc--cCCCCcccccCccchhhhHHHHhhcccchhheecccc
Confidence 456999999999999999999999999999999998885 6 4689999999999999999999999999999999998
Q ss_pred ccccccccCCCC--------C-------------------------------------C-C------------------C
Q psy16825 89 RGGRQKYRRNPD--------L-------------------------------------L-S------------------Q 104 (183)
Q Consensus 89 ~~~~~~~~~~~~--------~-------------------------------------~-~------------------~ 104 (183)
+...+....... . . + .
T Consensus 128 ~~~~k~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~l~~ae~~~~~~ 207 (419)
T 3dzy_D 128 PQAEKEKLLAEISSDIDQLNPESADLRALAKHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVIYDMNSLMMGEDKIKFK 207 (419)
T ss_dssp TTTTGGGSTTTTTSTTTTSCSTTHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHCCSSSCCCEEECSHHHHHCCC------
T ss_pred cccccccccccccccccCCCCchhhHHHHHHHHHHhhhccCCccchhccccccCCCCCCCCcccccchhhhhcccccccc
Confidence 754432110000 0 0 0 0
Q ss_pred C------------------------------CCCCCCCCCccccccccc-------------------------------
Q psy16825 105 Q------------------------------WPPNKSIPSLEDLERNTE------------------------------- 123 (183)
Q Consensus 105 ~------------------------------~~~~k~iP~f~~L~~~dq------------------------------- 123 (183)
. +.+.|.+|+|.+|+.+||
T Consensus 208 ~~~~~~~~~~e~~~~~~~~~~~~~~~~l~~~VewAK~iP~F~~L~~~DQi~LLk~~w~Ell~L~~a~~~~~~~~~~~~~~ 287 (419)
T 3dzy_D 208 HITPLQEQSKEVAIRIFQGCQFRSVEAVQEITEYAKSIPGFVNLDLNDQVTLLKYGVHEIIYTMLASLMNKDGVLISEGQ 287 (419)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHTTSTTTTTSCHHHHHHHHHHHHHHHHHHHHGGGBCSSEEEEGGGT
T ss_pred cCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeecCc
Confidence 0 011288999999999999
Q ss_pred -------------------chhhhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhcC
Q psy16825 124 -------------------ISCTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVLR 183 (183)
Q Consensus 124 -------------------~~~~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~~ 183 (183)
..+.+++.+|+.|++|.+||+||+||+||+||++ |.+...|+++|++++.+|.+|+..++
T Consensus 288 ~~~~~~~~~~~~~~~~~l~~~i~~f~~~l~~L~ld~~E~alLkAivLf~pD~~gL~~~~~Ve~lQe~~~~aL~~yi~~~~ 367 (419)
T 3dzy_D 288 GFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNH 367 (419)
T ss_dssp EEEEHHHHHSSSGGGSGGGHHHHHHHHHHHHTCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccHHHHHhhhhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 0123677899999999999999999999999987 99999999999999999999997653
No 3
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=100.00 E-value=2.5e-37 Score=204.09 Aligned_cols=85 Identities=44% Similarity=0.927 Sum_probs=79.9
Q ss_pred CCCCCCcccccCCCCcccccccccccchhhhhhccccCCceeecCCCCCccccccccccccchhhhHHhhhcccccceee
Q psy16825 6 EELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRL 85 (183)
Q Consensus 6 ~~~~~~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~CR~~KCl~~GM~~~~v~~ 85 (183)
++++...|.|||++++|+||||++|+||++||||+|..+..|.|+.+++|.+++..|+.|++|||+|||++||++++||.
T Consensus 3 ~~~~~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~ 82 (89)
T 2ebl_A 3 SGSSGIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQR 82 (89)
T ss_dssp CCCSSCBCTTTCSBCCSEETTEECCHHHHHHHHHHHTTTCCCCCSSCSCCCCCSSSSSCCSHHHHHHHHHHTCCHHHHSC
T ss_pred CCCCCCCCcEeCCCCcceEeCchhhHHhhhhhheeeeeccceecccCccCCcCccCccccccchHHHhhhccCCHHHccc
Confidence 34456679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q psy16825 86 DRVRG 90 (183)
Q Consensus 86 ~r~~~ 90 (183)
+|++.
T Consensus 83 ~R~~~ 87 (89)
T 2ebl_A 83 GSGPS 87 (89)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 99864
No 4
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=100.00 E-value=4.9e-37 Score=201.22 Aligned_cols=82 Identities=52% Similarity=1.111 Sum_probs=78.0
Q ss_pred CCCCcccccCCCCcccccccccccchhhhhhccccCCceeecCCCCCccccccccccccchhhhHHhhhcccccceeecc
Q psy16825 8 LPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDR 87 (183)
Q Consensus 8 ~~~~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~CR~~KCl~~GM~~~~v~~~r 87 (183)
.+...|.|||++++|+||||++|+||++||||+|..+..|.|+.+++|.+++..++.|++|||+|||++||++++||.+|
T Consensus 3 ~~~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R 82 (85)
T 1dsz_B 3 FTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEER 82 (85)
T ss_dssp SCCEECTTTCCEESSEETTEECCHHHHHHHHHHHHHTCCCCCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCCCC
T ss_pred CCCCCCCEeCCCCCceeeCccchHHHHHHHHHhhccccceeecccccccccccccccCcchhHHHHhHcCCCHHHhhccc
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q psy16825 88 VR 89 (183)
Q Consensus 88 ~~ 89 (183)
++
T Consensus 83 ~~ 84 (85)
T 1dsz_B 83 QR 84 (85)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 5
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=196.43 Aligned_cols=77 Identities=47% Similarity=1.063 Sum_probs=73.4
Q ss_pred cccccCCCCcccccccccccchhhhhhccccCCceeecCCCCCccccccccccccchhhhHHhhhcccccceeeccc
Q psy16825 12 LCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRV 88 (183)
Q Consensus 12 ~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~CR~~KCl~~GM~~~~v~~~r~ 88 (183)
.|.|||++++|+||||++|+||++||||+|..+..|.|+.+++|.+++..++.|++|||+|||++||++++||.+|+
T Consensus 2 ~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~Rd 78 (78)
T 3cbb_A 2 LCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSCRFSRQCVVDKDKRNQCRYCRLKKCFRAGMKKEAVQNERD 78 (78)
T ss_dssp BCTTTSSBCCSEETTEECCHHHHHHHHHHHHTTCCCCCSSCSCCCCSTTTTTTCHHHHHHHHHHHTCCGGGCCCC--
T ss_pred CCeEeCCCCCceEeCCcchhhhceeeeEEEecccCcccccccccCcCccccccChhhhhHHHhHcCCCHHHccccCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999875
No 6
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=100.00 E-value=1.5e-36 Score=204.22 Aligned_cols=85 Identities=52% Similarity=1.093 Sum_probs=71.9
Q ss_pred CCcccccCCCCcccccccccccchhhhhhccccCCceeecCCCCCccccccccccccchhhhHHhhhcccccceeecccc
Q psy16825 10 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVR 89 (183)
Q Consensus 10 ~~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~CR~~KCl~~GM~~~~v~~~r~~ 89 (183)
...|.|||++++|+||||++|+||++||||+|..+..|.|+.+++|.+++..++.|++|||+|||++||++++||.+|++
T Consensus 3 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~ 82 (99)
T 1ynw_B 3 KHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQR 82 (99)
T ss_dssp --CBTTTBSCCCBCCTTSCBCSHHHHHHHHHHHTTCCCCCSSSSCCCCCSTTSSSCHHHHHHHHHHTTCCSTTCC-----
T ss_pred CCCCceeCCCCcceeeCccchHHHHHHHHhhhccccccccCCCCcccccccCCccCccccHHHHhHcCCCHHHhhhcccc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccc
Q psy16825 90 GGRQK 94 (183)
Q Consensus 90 ~~~~~ 94 (183)
...+.
T Consensus 83 ~~~~~ 87 (99)
T 1ynw_B 83 GKDRN 87 (99)
T ss_dssp -----
T ss_pred ccccC
Confidence 76643
No 7
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=100.00 E-value=8.3e-37 Score=205.08 Aligned_cols=89 Identities=84% Similarity=1.550 Sum_probs=82.9
Q ss_pred CCCCcccccCCCCcccccccccccchhhhhhccccCCceeecCCCCCccccccccccccchhhhHHhhhcccccceeecc
Q psy16825 8 LPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDR 87 (183)
Q Consensus 8 ~~~~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~CR~~KCl~~GM~~~~v~~~r 87 (183)
.+...|.|||++++|+||||++|+||++||||+|..+..|.|+.+++|.+++..++.|++|||+|||++||++++||.+|
T Consensus 2 ~~~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R 81 (98)
T 1lo1_A 2 IPKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKALKVGMLKEGVRLDR 81 (98)
T ss_dssp CCCCEETTTTEECSEESSSSEECHHHHHHHHHHHHTTCCCCCSSCSCCCCCHHHHHHCHHHHHHHHHHHTCCGGGSCSSC
T ss_pred CCCCCCcEeCCCCcCeeeCccchhhhhhhheeeecccCccccCccccccccccccccccchhHHHHhHcCCCHHHeeccc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccc
Q psy16825 88 VRGGRQKYR 96 (183)
Q Consensus 88 ~~~~~~~~~ 96 (183)
++..+.+..
T Consensus 82 ~~~~r~k~~ 90 (98)
T 1lo1_A 82 VRGGRQKYK 90 (98)
T ss_dssp CTTCCCCCC
T ss_pred ccCcccccC
Confidence 887775543
No 8
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=100.00 E-value=1.2e-36 Score=202.63 Aligned_cols=84 Identities=51% Similarity=1.035 Sum_probs=76.0
Q ss_pred CCCcccccCCCCcccccccccccchhhhhhccccCCceeecCCCCCccccccccccccchhhhHHhhhcccccceeeccc
Q psy16825 9 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRV 88 (183)
Q Consensus 9 ~~~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~CR~~KCl~~GM~~~~v~~~r~ 88 (183)
....|.|||++++|+||||++|+||++||||+|..+..|.|+.+++|.+++..++.|++|||+|||++||++++||.+|+
T Consensus 9 ~~~~C~VCgd~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~ 88 (93)
T 2han_A 9 SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQYCRYQKCLTCGMKREAVQEERQ 88 (93)
T ss_dssp -CCBCTTTCSBCCEEETTEEECHHHHHHHHHHHHHTCCCCCSSCSCCCCSTTTGGGCHHHHHHHHHHHTCCGGGSCCCC-
T ss_pred CCCCCcEeCCCCcCeecCcchhHHHHHHHHhhhccccCcCcCCCCcCCcCCCCCccCccccHHHHhHhCCCHHHhhhccC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccc
Q psy16825 89 RGGR 92 (183)
Q Consensus 89 ~~~~ 92 (183)
+..+
T Consensus 89 ~~~~ 92 (93)
T 2han_A 89 GIHR 92 (93)
T ss_dssp ----
T ss_pred cccC
Confidence 6543
No 9
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=100.00 E-value=2.2e-36 Score=198.69 Aligned_cols=82 Identities=52% Similarity=1.043 Sum_probs=73.7
Q ss_pred CCcccccCCCCcccccccccccchhhhhhccccCCceeecCCCCCccccccccccccchhhhHHhhhcccccceeecccc
Q psy16825 10 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVR 89 (183)
Q Consensus 10 ~~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~CR~~KCl~~GM~~~~v~~~r~~ 89 (183)
...|.|||++++|+||||++|+||++||||+|..+..|.|+.+++|.+++..++.|++|||+|||++||++++||.+|++
T Consensus 4 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~~ 83 (86)
T 1dsz_A 4 YKPCFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNK 83 (86)
T ss_dssp --CCTTTCSCCCSEETTEECCHHHHHHHHHHHHTTCCCCCSSCSCCCCSTTTGGGCHHHHHHHHHHTTCCGGGSCCC---
T ss_pred CCCCcEECCCccceeeCchhHHHHHHHHHHHhhcccceeeccCCccccCccccccchhhhHHHHHHhCCCHHHhhhcccc
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cc
Q psy16825 90 GG 91 (183)
Q Consensus 90 ~~ 91 (183)
.+
T Consensus 84 ~k 85 (86)
T 1dsz_A 84 KK 85 (86)
T ss_dssp --
T ss_pred cc
Confidence 53
No 10
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=100.00 E-value=2.9e-36 Score=199.19 Aligned_cols=84 Identities=57% Similarity=1.087 Sum_probs=78.8
Q ss_pred CcccccCCCCcccccccccccchhhhhhccccCCceeecCCCCCccccccccccccchhhhHHhhhcccccceeeccccc
Q psy16825 11 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRG 90 (183)
Q Consensus 11 ~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~CR~~KCl~~GM~~~~v~~~r~~~ 90 (183)
+.|.|||++++|+||||++|+||++||||+|..+..|.|+.+++|.+++..++.|++|||+|||++||++++||.++...
T Consensus 1 ~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~~~~~ 80 (89)
T 1cit_A 1 GRCAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQKCLAVGMVKEVVRTDSLKG 80 (89)
T ss_dssp CCCSSSCCCCCEEETTEEECHHHHHHHHHHHHHTCCCCCSSSSCCCCSTTTTTTCHHHHHHHHHHTTCCGGGSCCGGGTT
T ss_pred CCCeEeCCCCcceEeCccchhhhhhhceeeEEecceeeeccCCccccCCCCcccChhhhhHHHhHcCCCHHHeecccccC
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred cccc
Q psy16825 91 GRQK 94 (183)
Q Consensus 91 ~~~~ 94 (183)
.+.+
T Consensus 81 ~r~r 84 (89)
T 1cit_A 81 RRGR 84 (89)
T ss_dssp CCSC
T ss_pred cccc
Confidence 5544
No 11
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=100.00 E-value=4e-36 Score=206.39 Aligned_cols=90 Identities=57% Similarity=1.108 Sum_probs=80.2
Q ss_pred CCCCCCCcccccCCCCcccccccccccchhhhhhccccCCceeecCCCCCccccccccccccchhhhHHhhhccccccee
Q psy16825 5 EEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVR 84 (183)
Q Consensus 5 ~~~~~~~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~CR~~KCl~~GM~~~~v~ 84 (183)
+++.+...|.|||++++|+||||++|+||++||||+|..+..|.|+.+++|.+++..++.|++|||+|||++||++++||
T Consensus 4 ~~~~~~~~C~VCgd~a~G~HyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~R~~Cr~CR~~KCl~vGM~~~~vq 83 (113)
T 2a66_A 4 GDEDLEELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVR 83 (113)
T ss_dssp ------CBCTTTCCBEEEEETTEEEEHHHHHHHHHHHHTTCCCCCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSC
T ss_pred CCCCCCCCCcEeCCCCcceeeCcccHHHHHHHHhhhhhccccccccccccCCcCCCccccccchhHHHHhHhCCCHHHhc
Confidence 34555678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccccc
Q psy16825 85 LDRVRGGRQK 94 (183)
Q Consensus 85 ~~r~~~~~~~ 94 (183)
.+|++..+.+
T Consensus 84 ~~R~~~~r~~ 93 (113)
T 2a66_A 84 ADRMRGGRNK 93 (113)
T ss_dssp TTCCCSSCCT
T ss_pred cccccCCCCC
Confidence 9998776643
No 12
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=100.00 E-value=7.8e-36 Score=195.08 Aligned_cols=79 Identities=63% Similarity=1.256 Sum_probs=69.0
Q ss_pred CCcccccCCCCcccccccccccchhhhhhccccCCceeecCCCCCccccccccccccchhhhHHhhhcccccceeeccc
Q psy16825 10 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRV 88 (183)
Q Consensus 10 ~~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~CR~~KCl~~GM~~~~v~~~r~ 88 (183)
...|.|||++++|+||||++|+||++||||+|..+..|.|+.+++|.+++..++.|++|||+|||++||++++||.+|.
T Consensus 4 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~ 82 (84)
T 1hcq_A 4 TRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQACRLRKCYEVGMMKGGIRKDRR 82 (84)
T ss_dssp CCBCTTTCSBCCEEETTEEECHHHHHHHHHHHSSCCCCCCSSSSCCCCSTTTTTTCHHHHHHHHHHHTCCC--------
T ss_pred CCcCcEECCCCCCeeeCccchHHhhhhhhhccccccccccccCccCCcCCcCcccChhhhhHHHhHcCCCHHHhcccCC
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999999999885
No 13
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=100.00 E-value=6.9e-36 Score=199.33 Aligned_cols=84 Identities=52% Similarity=1.094 Sum_probs=74.8
Q ss_pred CCcccccCCCCcccccccccccchhhhhhccccCCcee-ecCCCCCccccccccccccchhhhHHhhhcccccceeeccc
Q psy16825 10 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEY-TCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRV 88 (183)
Q Consensus 10 ~~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~-~C~~~~~C~~~k~~r~~C~~CR~~KCl~~GM~~~~v~~~r~ 88 (183)
...|.|||++++|+||||++|+||++||||+|..+..| .|..+++|.+++..++.|++|||+|||++||++++||.+|+
T Consensus 7 ~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~vq~~R~ 86 (94)
T 1a6y_A 7 VLLCKVCGDVASGFHYGVLACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRFKKCLSVGMSRDAVRFGRI 86 (94)
T ss_dssp -CBCTTTSSBCCEEETTEEECHHHHHHHHHHHSSCCCCCCCSSTTCCCCCTTTTTSCHHHHHHHHTTTTCCSTTCCCCC-
T ss_pred CCcCcEeCCCCcceEeCccchhhhhhehheeeecccceEEccCCCCCccCccccccccchhHHHhhHccCCHHHhccCcC
Confidence 46799999999999999999999999999999999999 59999999999999999999999999999999999999998
Q ss_pred ccccc
Q psy16825 89 RGGRQ 93 (183)
Q Consensus 89 ~~~~~ 93 (183)
+...+
T Consensus 87 ~~~~k 91 (94)
T 1a6y_A 87 PKREK 91 (94)
T ss_dssp -----
T ss_pred cCchh
Confidence 76543
No 14
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=100.00 E-value=2.4e-35 Score=204.86 Aligned_cols=83 Identities=42% Similarity=0.915 Sum_probs=78.4
Q ss_pred CCCCcccccCCCCcccccccccccchhhhhhccccCCceeecCCCCCccccccccccccchhhhHHhhhcccccceeecc
Q psy16825 8 LPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDR 87 (183)
Q Consensus 8 ~~~~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~CR~~KCl~~GM~~~~v~~~r 87 (183)
.....|.|||++++|+||||++|+||++||||+|..+..|.|+.+++|.+++..++.|++|||+|||++||++++|+.++
T Consensus 6 ~~~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~r 85 (119)
T 2han_B 6 VQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECVVPEN 85 (119)
T ss_dssp CCSCBCTTTCSBCCEEETTEEECHHHHHHHHHHHHTTCCCCCSSCSCCCCSTTGGGTCHHHHHHHHHHTTCCGGGSSCSS
T ss_pred CCCCcCeEeCCcCCcceECchhHHhhHHhhhhheEeccccccccccccccCccccccchhhHHHHHHHhCCCHHHccchh
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccc
Q psy16825 88 VRG 90 (183)
Q Consensus 88 ~~~ 90 (183)
+..
T Consensus 86 ~~~ 88 (119)
T 2han_B 86 QCA 88 (119)
T ss_dssp HHH
T ss_pred hhh
Confidence 654
No 15
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=100.00 E-value=4.7e-35 Score=202.03 Aligned_cols=87 Identities=49% Similarity=1.012 Sum_probs=70.8
Q ss_pred CCCCCCcccccCCCCcccccccccccchhhhhhccccCCceeecCCCCCccccccccccccchhhhHHhhhcccccceee
Q psy16825 6 EELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRL 85 (183)
Q Consensus 6 ~~~~~~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~CR~~KCl~~GM~~~~v~~ 85 (183)
++.+...|.|||++++|+||||.+|+||++||||+|..+..|.|+.+++|.+++..++.|++|||+||+++||++++||.
T Consensus 25 ~~~~~~~C~VCgd~a~G~HyGv~sC~aCk~FFRRsv~~~~~y~C~~~~~C~i~~~~r~~Cr~CRl~KCl~vGM~~~avq~ 104 (117)
T 4hn5_A 25 SNAPPKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKT 104 (117)
T ss_dssp -----CBCTTTCSBCCEEETTEEECHHHHHHHHHHHSSCCCCCCSSSSCCCCSTTTTTTCHHHHHHHHHHHTCCTTC---
T ss_pred CCCCCCcCCcCCCcCcccccCCcccchhhhhhhcceecCCceecCCCCccccCcccccCCcccchHHHhHcCCCHHHhcc
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccc
Q psy16825 86 DRVRGGR 92 (183)
Q Consensus 86 ~r~~~~~ 92 (183)
+|.....
T Consensus 105 kR~~k~~ 111 (117)
T 4hn5_A 105 KKKIKGI 111 (117)
T ss_dssp -------
T ss_pred ccccccc
Confidence 8865433
No 16
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=100.00 E-value=4e-35 Score=200.88 Aligned_cols=82 Identities=44% Similarity=0.981 Sum_probs=76.4
Q ss_pred CCCcccccCCCCcccccccccccchhhhhhccccCCceeecCCCCCccccccccccccchhhhHHhhhcccccceeeccc
Q psy16825 9 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRV 88 (183)
Q Consensus 9 ~~~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~CR~~KCl~~GM~~~~v~~~r~ 88 (183)
....|.|||++++|+||||++|+||++||||+|..+..|.|+.+++|.+++..++.|++|||+|||++||++++|+.+|.
T Consensus 5 ~~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~Cr~CR~~KCl~vGM~~~~v~~~r~ 84 (110)
T 1kb2_A 5 VPRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEE 84 (110)
T ss_dssp --CBCTTTCSBCCSEETTEECCHHHHHHHHHHHHTTCCCCCSSCSCCCCCTTTTTTCHHHHHHHHHHTTCCGGGSCCHHH
T ss_pred cCCCCcEeCCCCCceEeCchhHhhhhhhheeeeecccceeeCCCCCccCCcccceecccccHhhhhhcCCcHHhcccHHH
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred cc
Q psy16825 89 RG 90 (183)
Q Consensus 89 ~~ 90 (183)
..
T Consensus 85 ~q 86 (110)
T 1kb2_A 85 VQ 86 (110)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 17
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=100.00 E-value=8.2e-35 Score=193.21 Aligned_cols=82 Identities=50% Similarity=1.033 Sum_probs=75.1
Q ss_pred CcccccCCCCcccccccccccchhhhhhccccCCceeecCCCCCccccccccccccchhhhHHhhhcccccceeeccccc
Q psy16825 11 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRVRG 90 (183)
Q Consensus 11 ~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~CR~~KCl~~GM~~~~v~~~r~~~ 90 (183)
..|.|||++++|+||||.+|+||++||||+|..+..|.|..+++|.+++..++.|++|||+|||++||++++||.+|...
T Consensus 3 ~~C~VCg~~a~g~hyGv~sC~~Ck~FFRR~v~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl~~GM~~~avq~~r~~~ 82 (90)
T 3g9m_A 3 HMCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCLQAGMNLEARKTKKKIK 82 (90)
T ss_dssp CBCTTTCSBCCEEETTEEECHHHHHHHHHHHHSCCCCCCSSSSCCCCCTTGGGTCHHHHHHHHHHHTCCTTHHHHHC---
T ss_pred CcCccCCCcCcccccCCccchhHhHHhhhhhhcCCceeCCCCCccccCcccccCCcchhhHHHHHcCCCHHHhccccccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999998655
Q ss_pred cc
Q psy16825 91 GR 92 (183)
Q Consensus 91 ~~ 92 (183)
..
T Consensus 83 ~~ 84 (90)
T 3g9m_A 83 GI 84 (90)
T ss_dssp --
T ss_pred cc
Confidence 44
No 18
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=100.00 E-value=1.8e-34 Score=195.91 Aligned_cols=83 Identities=46% Similarity=1.022 Sum_probs=71.7
Q ss_pred CCCCcccccCCCCcccccccccccchhhhhhccccCCceeecCCCCCccccccccccccchhhhHHhhhcccccceeecc
Q psy16825 8 LPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDR 87 (183)
Q Consensus 8 ~~~~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~CR~~KCl~~GM~~~~v~~~r 87 (183)
++...|.|||++++|+||||++|+||++||||+|..+..|.|+.+++|.+++..|+.|++|||+|||++||++++++..+
T Consensus 5 ~~~~~C~VCg~~a~g~hyGv~sC~aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~~k~~k 84 (105)
T 1r4i_A 5 PPQKTCLICGDEASGAHYGALTCGSCKVFFKRAAEGKQKYLCASRNDCTIDKFRRKNCPSCRLRKCYEAGMTLGARKLKK 84 (105)
T ss_dssp -CCCBCSSSCSBEEEEETTEEEEHHHHHHHHHHHTSCCCCCCSSSSCCCCCTTTTTTCHHHHHHHHHHHTCCSCC-----
T ss_pred CCCCCCcEeCCCCCceEeCCcchhhhhhhhceeEEecCceeeccCCccccCccccccchhchHHHHHhhhcccchhhhcc
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred ccc
Q psy16825 88 VRG 90 (183)
Q Consensus 88 ~~~ 90 (183)
.+.
T Consensus 85 ~~~ 87 (105)
T 1r4i_A 85 LGN 87 (105)
T ss_dssp ---
T ss_pred ccc
Confidence 643
No 19
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=100.00 E-value=8.1e-35 Score=197.26 Aligned_cols=83 Identities=47% Similarity=0.985 Sum_probs=77.2
Q ss_pred CcccccCCCCcccccccccccchhhhhhccccCCc--eeecCCCCCccccccccccccchhhhHHhhhcccccceeeccc
Q psy16825 11 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNI--EYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRLDRV 88 (183)
Q Consensus 11 ~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~--~~~C~~~~~C~~~k~~r~~C~~CR~~KCl~~GM~~~~v~~~r~ 88 (183)
..|.|||++++|+||||+||+||++||||+|..+. .|.|+.+++|.+++..++.|++|||+||+++||++++||.++.
T Consensus 2 ~~C~VCgd~a~g~hyGv~sC~aCk~FFRR~v~~~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl~vGM~~~~v~~~~~ 81 (103)
T 2nll_B 2 ELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDLVLDDSK 81 (103)
T ss_dssp CBCTTTCSBCCSEETTEECCHHHHHHHHHHHHTTCGGGCCCSSCTTCCCSTTTTTSCHHHHHHHHHHTTCCGGGSCCHHH
T ss_pred CCCeEeCCcCcCeecCcccHHHhhhhheecccccccchhhhhccCCcCcCccCccccchhhhHhhhHhCCCHHHhhhhhh
Confidence 46999999999999999999999999999999875 8999999999999999999999999999999999999999987
Q ss_pred ccccc
Q psy16825 89 RGGRQ 93 (183)
Q Consensus 89 ~~~~~ 93 (183)
+..+.
T Consensus 82 ~~~k~ 86 (103)
T 2nll_B 82 RLAKR 86 (103)
T ss_dssp HHHHH
T ss_pred hHHhh
Confidence 65443
No 20
>2lze_A A primordial catalytic fold generated by in vitro evolution; ligase, de novo protein; NMR {Synthetic construct}
Probab=99.85 E-value=2.5e-22 Score=131.18 Aligned_cols=69 Identities=23% Similarity=0.263 Sum_probs=61.0
Q ss_pred ccCCCCcccccccccccchhhhhhccccCCceeecCCCCCccccccccccccchhhhHHhhhcccccceee
Q psy16825 15 VCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQKCLRKGMLKEGVRL 85 (183)
Q Consensus 15 vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~CR~~KCl~~GM~~~~v~~ 85 (183)
....++.+.||+++ |.+|++||||++ .+..|.|+.+++|.|++..|+.|++|||+|||+|||+...+..
T Consensus 9 ~p~~p~~g~h~c~v-Cgd~asfFRRt~-~~~~y~C~~~~~C~i~~~~R~~C~~CR~qKCl~VgM~~~~~~~ 77 (87)
T 2lze_A 9 DPLEPRGGKHICAI-CGNNAEDYKHTD-MDLTYTDRDYKNCESYHKCSDLCQYCRYQKDLAIHHQHHHGGS 77 (87)
T ss_dssp CTTCCSCCSSSCSS-SSSSSSSCTTTT-TSCTTTSCCCCCCCCSSCCSSSCSGGGTSCCHHHHCSSCCCCC
T ss_pred CCcCCCCCCEEccC-CCCccceECccc-CCCeeEcCCCCccccCCCccCcCCcccChhhccCcCEeccCcc
Confidence 34467889999987 999999999995 6788999999999999999999999999999999998775543
No 21
>1lbd_A RXR_LBD, retinoid X receptor; transcription factor, nuclear receptor, structural proteomic europe, spine, structural genomics; 2.70A {Homo sapiens} SCOP: a.123.1.1 PDB: 1z5x_U* 2q60_A
Probab=99.74 E-value=2.3e-18 Score=136.78 Aligned_cols=56 Identities=25% Similarity=0.383 Sum_probs=52.3
Q ss_pred hhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 127 TQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 127 ~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
.+++.+|++|++|.+||+||+||+||+||++ |++...|+.+|++++.+|.+|+...
T Consensus 171 ~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~gLs~~~~v~~lq~~~~~~L~~y~~~~ 227 (282)
T 1lbd_A 171 TELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHK 227 (282)
T ss_dssp HHHHHHTTTTCCCHHHHHHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999986 9999999999999999999999754
No 22
>1xdk_B RAR-beta, retinoic acid receptor, beta; nuclear receptor, coactivator, ligand, hormone/growth factor receptor complex; HET: REA; 2.90A {Mus musculus} SCOP: a.123.1.1
Probab=99.48 E-value=4.5e-14 Score=113.21 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=52.8
Q ss_pred hhhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 126 CTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 126 ~~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
+..++.+|++|++|.+||+||+||+||+||++ |.+...|+.+|++++.+|.+||...
T Consensus 157 i~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~ 214 (303)
T 1xdk_B 157 VFTFANQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEALKIYIRKR 214 (303)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHSCSCSSSCSSHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 34688999999999999999999999999986 9999999999999999999999754
No 23
>3vi8_A Peroxisome proliferator-activated receptor alpha; nuclear receptor, protein-ligand complex, PPAR, transcriptio; HET: 13M; 1.75A {Homo sapiens} PDB: 2znn_A* 3et1_A* 3kdu_A* 3kdt_A* 2rew_A* 1i7g_A* 3g8i_A* 1kkq_A* 1k7l_A* 3sp6_A* 2npa_A* 2p54_A* 3fei_A* 3tkm_A* 2znq_A* 2znp_A* 3sp9_A* 3gwx_A* 3dy6_A* 1gwx_A* ...
Probab=99.43 E-value=1.6e-13 Score=108.40 Aligned_cols=75 Identities=15% Similarity=0.238 Sum_probs=69.2
Q ss_pred CCCCCCccccccccc--------------------------------------------------chhhhhhhhchhccc
Q psy16825 109 NKSIPSLEDLERNTE--------------------------------------------------ISCTQVIDRLEHVAV 138 (183)
Q Consensus 109 ~k~iP~f~~L~~~dq--------------------------------------------------~~~~~lv~~~~~l~~ 138 (183)
.|.+|+|.+|+.+|| ..+.+++.+|+.|++
T Consensus 96 AK~iPgF~~L~~~DQi~LLk~~w~ElllL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~l 175 (273)
T 3vi8_A 96 AKAIPGFANLDLNDQVTLLKYGVYEAIFAMLSSVMNKDGMLVAYGNGFITREFLKSLRKPFCDIMEPKFDFAMKFNALEL 175 (273)
T ss_dssp GGGSTTTTTSCHHHHHHHHHHHHHHHHHHHHGGGEETTEEEETTTTEEEEHHHHHHSCTTTHHHHHHHHHHHHHHHTTCC
T ss_pred HccCcCcccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCCccchHHHHHhhhhHHHHHHHHHHHHHHHHHhCC
Confidence 489999999999999 235689999999999
Q ss_pred ChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhcC
Q psy16825 139 SKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVLR 183 (183)
Q Consensus 139 ~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~~ 183 (183)
|.+||+||+||+||+||++ |.+...|+.+|++++.+|.+||..++
T Consensus 176 d~~E~alLkAivLf~pd~~gL~~~~~Ve~lqe~~~~aL~~yi~~~~ 221 (273)
T 3vi8_A 176 DDSDISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHLQSNH 221 (273)
T ss_dssp CHHHHHHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999987 99999999999999999999998654
No 24
>1ovl_A Orphan nuclear receptor NURR1 (MSe 414, 496, 511); NUUR1, LBD, transcription; 2.20A {Homo sapiens} SCOP: a.123.1.1
Probab=99.39 E-value=3.5e-13 Score=106.28 Aligned_cols=57 Identities=16% Similarity=0.284 Sum_probs=51.9
Q ss_pred hhhhhhhchhcccChhHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 126 CTQVIDRLEHVAVSKEEYYFLKALVLANSDVKLDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 126 ~~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
+.+++.+|++|++|.+||+||+||+|||+..+|++...|+++|++++.+|.+||...
T Consensus 159 l~~~~~~l~~L~ld~~E~~lLkAivL~~~~~gL~~~~~v~~lq~~~~~aL~~y~~~~ 215 (271)
T 1ovl_A 159 IVEFSSNLQNMNIDISAFSCIAALAMVTERHGLKEPKRVEELQNKIVNCLKDHVTFN 215 (271)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHSSCCTTCSCHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 357899999999999999999999999975559999999999999999999999753
No 25
>3cqv_A Nuclear receptor subfamily 1 group D member 2; reverb beta, heme, NR1D2, DNA-binding, metal-binding, nucleus, repressor, transcription; HET: HEM; 1.90A {Homo sapiens} PDB: 2v7c_A 2v0v_A
Probab=99.33 E-value=1.3e-12 Score=98.53 Aligned_cols=57 Identities=19% Similarity=0.372 Sum_probs=53.3
Q ss_pred hhhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 126 CTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 126 ~~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
+.+++.+|++|++|.+||++|+||+|||||++ |++...|+++|++++.+|.+|+...
T Consensus 106 i~~~~~~~~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~v~~~q~~~~~aL~~y~~~~ 163 (199)
T 3cqv_A 106 MFEFSEKLNALQLSDEEMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKN 163 (199)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHTSCCTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999986 9999999999999999999999754
No 26
>1fcy_A RAR-gamma-1, retinoic acid receptor gamma-1; isotype selectivity, retinoid ligand complexes, drug design, antiparallel alpha-helical sandwich fold; HET: 564 LMU; 1.30A {Homo sapiens} SCOP: a.123.1.1 PDB: 1fcz_A* 1fcx_A* 1fd0_A* 1exa_A* 1exx_A* 1dkf_B*
Probab=99.31 E-value=2.8e-12 Score=99.10 Aligned_cols=57 Identities=19% Similarity=0.188 Sum_probs=52.9
Q ss_pred hhhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 126 CTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 126 ~~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
+.+++.+|++|++|.+||+||+||+||+||++ |++...|+++|++++.+|.+||...
T Consensus 130 i~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~ 187 (236)
T 1fcy_A 130 VFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRR 187 (236)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 34688999999999999999999999999986 9999999999999999999999754
No 27
>3v3e_B Nuclear receptor subfamily 4 group A member 1; orphan nuclear receptor, transcription; 2.06A {Homo sapiens} PDB: 3v3q_A* 2qw4_A 1yje_A
Probab=99.30 E-value=2.1e-12 Score=101.22 Aligned_cols=73 Identities=23% Similarity=0.300 Sum_probs=66.1
Q ss_pred CCCCCCccccccccc------------------------------------------------chhhhhhhhchhcccCh
Q psy16825 109 NKSIPSLEDLERNTE------------------------------------------------ISCTQVIDRLEHVAVSK 140 (183)
Q Consensus 109 ~k~iP~f~~L~~~dq------------------------------------------------~~~~~lv~~~~~l~~~~ 140 (183)
.|.+|+|.+|+.+|| ..+.+++.+|++|++|.
T Consensus 72 AK~iP~F~~L~~~DQi~LLk~~w~ElllL~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~ld~ 151 (257)
T 3v3e_B 72 AEKIPGFAELSPADQDLLLESAFLELFILRLAYRSKPGEGKLIFCSGLVLHRLQCARGFGDWIDSILAFSRSLHSLLVDV 151 (257)
T ss_dssp HHTSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHSBGGGTEEECTTSBEEEHHHHHHHHTTHHHHHHHHHHHHHHTTCCH
T ss_pred HHcCCCcccCCHHHHHHHHHHHHHHHHHHHHHHhccCCCCeeEeCCCccccHHHHHhhhHHHHHHHHHHHHHHHhcCCCH
Confidence 388999999999999 23567899999999999
Q ss_pred hHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHh
Q psy16825 141 EEYYFLKALVLANSDVKLDEFSSLKKFRNSILSSLGDCIYV 181 (183)
Q Consensus 141 ~E~~~lkai~L~~~d~~L~~~~~v~~~~~~~~~~L~~~~~~ 181 (183)
+||+||+||+||++..+|.+...|+++|++++.+|.+|+..
T Consensus 152 ~E~a~LkAivLfsd~~gL~~~~~Ve~lqe~~~~aL~~yi~~ 192 (257)
T 3v3e_B 152 PAFACLSALVLITDRHGLQEPRRVEELQNRIASCLKEHVAA 192 (257)
T ss_dssp HHHHHHHHHHHSSCCTTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999994456999999999999999999999964
No 28
>3l0l_A Nuclear receptor ROR-gamma; nuclear receptor, rorgamma, alternative splicing, DNA-bindin binding, nucleus, receptor, zinc-finger, acetylation, activator; HET: HC3; 1.74A {Homo sapiens} SCOP: a.123.1.0 PDB: 3b0w_A* 3kyt_A* 3l0j_A*
Probab=99.30 E-value=2.3e-12 Score=100.40 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=53.3
Q ss_pred hhhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 126 CTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 126 ~~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
+.+++.+|++|++|.+||+||+||+|||||++ |.+...|+++|++++.+|.+|+...
T Consensus 141 l~~~~~~l~~L~ld~~E~~lLkAivLfnpd~~gL~~~~~ve~lqe~~~~aL~~y~~~~ 198 (248)
T 3l0l_A 141 IFDFSHSLSALHFSEDEIALYTALVLINAHRPGLQEKRKVEQLQYNLELAFHHHLCKT 198 (248)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHHHHHHhh
Confidence 45789999999999999999999999999986 9999999999999999999999764
No 29
>2e2r_A Estrogen-related receptor gamma; ERR gamma, BPA, nuclear receptor, transcription; HET: 2OH; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 2zas_A* 2zbs_A 2zkc_A* 2p7g_A* 1vjb_A* 1tfc_A 2p7a_A* 2p7z_A* 2gpu_A* 1kv6_A 2gp7_A 2gpp_A* 2gpo_A* 2gpv_A* 1s9q_A* 1s9p_A* 2ewp_A*
Probab=99.28 E-value=4.4e-12 Score=98.55 Aligned_cols=57 Identities=26% Similarity=0.425 Sum_probs=53.0
Q ss_pred hhhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 126 CTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 126 ~~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
+.+++.+|++|++|.+||++|+||+|||||++ |++...|+++|++++.+|.+|+...
T Consensus 134 l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~ 191 (244)
T 2e2r_A 134 ILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQ 191 (244)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHTCCCTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 35789999999999999999999999999986 9999999999999999999999754
No 30
>3ltx_A Estrogen receptor; constitutive, nuclear receptor, DNA-binding, metal-binding, nucleus, transcription, transcription regulation, zinc-finger; 2.60A {Crassostrea gigas}
Probab=99.28 E-value=4.6e-12 Score=98.36 Aligned_cols=57 Identities=23% Similarity=0.437 Sum_probs=53.0
Q ss_pred hhhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 126 CTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 126 ~~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
+.+++.+|++|++|.+||+||+||+|||||++ |++...|+++|++++.+|.+|+...
T Consensus 123 i~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~ 180 (243)
T 3ltx_A 123 VAAVSEQMMQNHLHKDELLLLQAMVLVNAEVRRLASYNQIFNMQQSLLDAIVDTAQKY 180 (243)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTSCCSCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 34788999999999999999999999999986 9999999999999999999999754
No 31
>3u9q_A Peroxisome proliferator-activated receptor gamma; nuclear receptor, adipogenesis, RXRA, nucleus, transcription; HET: DKA; 1.52A {Homo sapiens} SCOP: a.123.1.1 PDB: 1i7i_A* 3ty0_A* 1zeo_A* 2p4y_A* 3et3_A* 3et0_A* 2hwq_A* 2ath_A* 2f4b_A* 2g0g_A* 2g0h_A* 2gtk_A* 2fvj_A* 2hwr_A* 2prg_A* 2q8s_A* 3fej_A* 3g9e_A* 3gbk_A* 3ia6_A* ...
Probab=99.27 E-value=4.9e-12 Score=99.71 Aligned_cols=56 Identities=9% Similarity=0.211 Sum_probs=52.6
Q ss_pred hhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 127 TQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 127 ~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
.+++.+|++|++|.+||+||+||+|||||++ |.+...|+++|++++.+|.+||..+
T Consensus 161 ~~~~~~l~~L~ld~~E~alLkAIvLfnpd~~gL~~~~~Ve~lqe~~~~aL~~y~~~~ 217 (269)
T 3u9q_A 161 FEFAVKFNALELDDSDLAIFIAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLN 217 (269)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHTCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999999986 9999999999999999999999764
No 32
>3n00_A REV-ERBA-alpha; reverba ncorid1, anti-parallel B-sheet, transcription regula; 2.60A {Homo sapiens}
Probab=99.27 E-value=3.6e-12 Score=99.20 Aligned_cols=57 Identities=19% Similarity=0.371 Sum_probs=53.5
Q ss_pred hhhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 126 CTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 126 ~~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
+.+++.+|++|++|.+||+||+||+|||||++ |++...|+++|++++.+|.+||...
T Consensus 151 i~~~~~~l~~L~ld~~E~~lLkAIvL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~ 208 (245)
T 3n00_A 151 MFDFSEKLNSLALTEEELGLFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKN 208 (245)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHTSCCTTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 45799999999999999999999999999986 9999999999999999999999764
No 33
>3kmr_A Retinoic acid receptor alpha; nuclear receptor transcription factor ligand binding domain, binding, metal-binding, nucleus, phosphoprotein; HET: EQN; 1.80A {Homo sapiens} PDB: 3kmz_B* 3a9e_B* 4dm6_A* 1xap_A* 4dm8_A* 2lbd_A* 3lbd_A* 4lbd_A*
Probab=99.27 E-value=6e-12 Score=99.06 Aligned_cols=56 Identities=16% Similarity=0.214 Sum_probs=52.6
Q ss_pred hhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 127 TQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 127 ~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
..++.+|++|++|.+||+||+||+||+||++ |++...|+++|++++.+|.+||..+
T Consensus 155 ~~~~~~l~~L~ld~~E~~lLkAIvL~~pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~ 211 (266)
T 3kmr_A 155 FAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDRVDMLQEPLLEALKVYVRKR 211 (266)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678999999999999999999999999986 9999999999999999999999764
No 34
>3k6p_A Steroid hormone receptor ERR1; estrogen related receptor alpha, DNA-binding, isopeptide BON binding, nucleus, phosphoprotein, transcription; HET: 5FB; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xb7_A 2pjl_A* 3d24_A
Probab=99.26 E-value=5.5e-12 Score=98.26 Aligned_cols=57 Identities=30% Similarity=0.457 Sum_probs=53.3
Q ss_pred hhhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 126 CTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 126 ~~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
+.+++.+|+++++|.+||++|+||+|||||++ |++...|+++|++++.+|.+|+..+
T Consensus 134 l~~~~~~l~~L~ld~~E~~lLkAivL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~ 191 (248)
T 3k6p_A 134 LLQLVRRLQALRLEREEYVLLKALALANSDSVHIEDAEAVEQLREALHEALLEYEAGR 191 (248)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHTCCCTTCSCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999986 9999999999999999999999764
No 35
>2iz2_A FTZ-F1 alpha, nuclear hormone receptor FTZ-F1; nuclear protein, phosphorylation, PAIR-RULE protein; 2.8A {Drosophila melanogaster} PDB: 2xhs_A
Probab=99.26 E-value=6.4e-12 Score=97.61 Aligned_cols=58 Identities=16% Similarity=0.285 Sum_probs=54.0
Q ss_pred hhhhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 125 SCTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 125 ~~~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
.+.+++.+|++|++|.+||+||+||+|||||++ |++...|+++|++++.+|.+|+...
T Consensus 133 ~~~~~~~~l~~L~ld~~E~~lLkAivL~npd~~gL~~~~~v~~lq~~~~~aL~~y~~~~ 191 (243)
T 2iz2_A 133 YFNELQNKLQDLKFDMGDYVCMKFLILLNPSVRGIVNRKTVSEGHDNVQAALLDYTLTC 191 (243)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHCCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 456889999999999999999999999999986 9999999999999999999999754
No 36
>1n83_A Nuclear receptor ROR-alpha; three-layered alpha helical sandwich, transcription regulation, nuclear protein, DNA binding, lipid binding protein; HET: CLR; 1.63A {Homo sapiens} SCOP: a.123.1.1 PDB: 1s0x_A*
Probab=99.26 E-value=5.1e-12 Score=99.66 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=53.1
Q ss_pred hhhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 126 CTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 126 ~~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
+.+++.+|++|++|.+||+||+||+|||||++ |.+...|+++|++++.+|.+||...
T Consensus 150 i~~~~~~l~~L~ld~~E~~lLkAivLfnpd~~gL~~~~~ve~lq~~~~~aL~~y~~~~ 207 (270)
T 1n83_A 150 VFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKN 207 (270)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999986 9999999999999999999999754
No 37
>2hc4_A Vitamin D receptor; alpha helical sandwich, gene regulation; HET: VDX; 2.20A {Danio rerio} PDB: 2hbh_A* 2hcd_A* 3dr1_A* 3o1d_A* 3o1e_A*
Probab=99.25 E-value=9e-12 Score=99.74 Aligned_cols=56 Identities=16% Similarity=0.273 Sum_probs=52.2
Q ss_pred hhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 127 TQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 127 ~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
.+++.+|++|++|.+||+||+||+|||||++ |.+...|+++|++++.+|.+||...
T Consensus 191 ~~~~~~l~~L~ld~~E~alLkAIvLfnpd~~gL~~~~~Ve~lqe~~~~aL~~y~~~~ 247 (302)
T 2hc4_A 191 VKFQVGLKKLKLHEEEHVLLMAICLLSPDRPGVQDHVRIEALQDRLCDVLQAYIRIQ 247 (302)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHTCSCSTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999986 9999999999999999999999754
No 38
>1xvp_B Orphan nuclear receptor NR1I3; CAR, RXR, citco, SRC1, DNA binding protein; HET: F15 CID; 2.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1xv9_B* 1xnx_A* 1xls_E*
Probab=99.25 E-value=4.3e-12 Score=98.64 Aligned_cols=56 Identities=16% Similarity=0.261 Sum_probs=52.2
Q ss_pred hhhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHh
Q psy16825 126 CTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYV 181 (183)
Q Consensus 126 ~~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~ 181 (183)
+.+++.+|++|++|.+||+||+||+|||||++ |++...|+++|++++.+|.+||..
T Consensus 140 i~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~ 196 (246)
T 1xvp_B 140 LFHFHGTLRKLQLQEPEYVLLAAMALFSPDRPGVTQRDEIDQLQEEMALTLQSYIKG 196 (246)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHSCSSSTTCSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 34678899999999999999999999999986 999999999999999999999974
No 39
>3cjw_A COUP transcription factor 2; COUP-TFII, nuclear receptor, ligand binding domain, orphan receptor, three-layered helical sandwich, DNA-binding; 1.48A {Homo sapiens}
Probab=99.25 E-value=6.2e-12 Score=97.62 Aligned_cols=56 Identities=23% Similarity=0.398 Sum_probs=52.1
Q ss_pred hhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 127 TQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 127 ~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
.+++.+|++|++|.+||+||+||+|+|||++ |++...|+++|++++.+|.+|+...
T Consensus 126 ~~~~~~~~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~ 182 (244)
T 3cjw_A 126 QEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQ 182 (244)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999986 9999999999999999999999754
No 40
>1osh_A BIle acid receptor; nuclear receptor, ligand binding domain, transcription; HET: FEX; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 3l1b_A* 3bej_A* 3fli_A* 3hc5_A* 3rvf_A* 3dct_A* 3dcu_A* 3ruu_A* 3rut_A* 3olf_A* 3okh_A* 3fxv_A* 3oki_A* 3omk_A* 3omm_A* 3oof_A* 3ook_A* 3hc6_A* 3p89_A* 3p88_A* ...
Probab=99.25 E-value=8.6e-12 Score=96.07 Aligned_cols=57 Identities=18% Similarity=0.359 Sum_probs=52.5
Q ss_pred hhhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 126 CTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 126 ~~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
+..++.+|++|++|.+||+||+||+|||||++ |++...|+++|++++.+|.+|+...
T Consensus 125 i~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~v~~~q~~~~~aL~~y~~~~ 182 (232)
T 1osh_A 125 MFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLDVLQKLCKIH 182 (232)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHTCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999999999999986 9999999999999999999999754
No 41
>3b0t_A Vitamin D3 receptor; nuclear receptor, transcription, gene regulation; HET: MCZ; 1.30A {Homo sapiens} PDB: 3a40_X* 1s0z_A* 1s19_A* 2ham_A* 2har_A* 2has_A* 1txi_A* 2hb8_A* 2hb7_A* 3a3z_X* 3a78_A* 3auq_A* 3aur_A* 3ax8_A* 3cs4_A* 3cs6_A* 1ie9_A* 1db1_A* 1ie8_A* 3kpz_A* ...
Probab=99.24 E-value=6.9e-12 Score=97.91 Aligned_cols=57 Identities=14% Similarity=0.233 Sum_probs=53.0
Q ss_pred hhhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 126 CTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 126 ~~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
+.+++.+|++|++|.+||+||+||+|||||++ |++...|+++|++++.+|.+||...
T Consensus 144 l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~ 201 (254)
T 3b0t_A 144 LIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQDRLSNTLQTYIRCR 201 (254)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHSCSCSTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccCCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 34688999999999999999999999999986 9999999999999999999999764
No 42
>3p0u_A Nuclear receptor subfamily 2 group C member 2; ligand binding domain, orphan nuclear receptor, testicular R 4, signaling protein; 3.00A {Homo sapiens}
Probab=99.24 E-value=8.8e-12 Score=97.13 Aligned_cols=57 Identities=25% Similarity=0.393 Sum_probs=53.0
Q ss_pred hhhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 126 CTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 126 ~~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
+.+++.+|++|++|.+||+||+||+|+|||++ |.+...|+++|++++.+|.+|+..+
T Consensus 128 l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~ 185 (249)
T 3p0u_A 128 LQEFCNSMAKLDIDGYEYAYLKAIVLFSPDHPGLTSTSQIEKFQEAAQMELQDYVQAT 185 (249)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHTCSCSTTCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 34688999999999999999999999999986 9999999999999999999999764
No 43
>1nq7_A Nuclear receptor ROR-beta; ligand-binding domain, retinoids, retinoic acid, synthetic ligand, antagonist, transcription; HET: ARL; 1.50A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1k4w_A* 1n4h_A*
Probab=99.24 E-value=4.7e-12 Score=98.38 Aligned_cols=57 Identities=21% Similarity=0.228 Sum_probs=53.1
Q ss_pred hhhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 126 CTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 126 ~~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
+.+++.+|++|++|.+||+||+||+|||||++ |++...|+.+|++++.+|.+||...
T Consensus 135 i~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~ 192 (244)
T 1nq7_A 135 AFDFAKNLCSLQLTEEEIALFSSAVLISPDRAWLLEPRKVQKLQEKIYFALQHVIQKN 192 (244)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 34789999999999999999999999999986 9999999999999999999999764
No 44
>2nxx_A Ultraspiracle (USP, NR2B4); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=99.23 E-value=7.4e-12 Score=96.65 Aligned_cols=57 Identities=19% Similarity=0.418 Sum_probs=53.2
Q ss_pred hhhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 126 CTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 126 ~~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
+.+++.+|++|++|.+||+||+||+|+|||++ |++...|+++|++++.+|.+|+...
T Consensus 124 ~~~~~~~l~~L~ld~~E~~lLkaivL~~pd~~gL~~~~~v~~~q~~~~~aL~~y~~~~ 181 (235)
T 2nxx_A 124 LSELVNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLEEYTRTT 181 (235)
T ss_dssp HHHTHHHHHHHTCCHHHHHHHHHHHHCCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999986 9999999999999999999999754
No 45
>3ilz_A Thyroid hormone receptor, alpha isoform 1 variant; nuclear receptor, signaling protein; HET: B72; 1.85A {Homo sapiens} SCOP: a.123.1.1 PDB: 3jzb_A* 3hzf_A* 2h79_A* 2h77_A* 1nav_A* 3uvv_A* 1xzx_X* 1y0x_X* 1nq1_A* 3jzc_A* 1nuo_A* 3imy_A* 1nq0_A* 1bsx_A* 1r6g_A* 1nq2_A* 3gws_X* 1n46_A* 2h6w_X* 2j4a_A* ...
Probab=99.23 E-value=5.7e-12 Score=99.20 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=53.2
Q ss_pred hhhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 126 CTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 126 ~~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
+.+++.+|++|++|.+||+||+||+|||||++ |.+...|+++|++++.+|.+||...
T Consensus 156 i~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~ve~lq~~~~~aL~~y~~~~ 213 (267)
T 3ilz_A 156 IFELGKSLSAFNLDDTEVALLQAVLLMSTDRSGLLXVDKIEKSQEAYLLAFEHYVNHR 213 (267)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHSCCCSSSCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788999999999999999999999999986 9999999999999999999999754
No 46
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=99.21 E-value=1.1e-11 Score=98.45 Aligned_cols=57 Identities=9% Similarity=0.255 Sum_probs=53.1
Q ss_pred hhhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 126 CTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 126 ~~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
+.+++.+|++|++|.+||+||+||+|||||++ |.+...|+++|++++.+|.+||...
T Consensus 175 l~~~~~~l~~L~ld~~E~~lLkAIvL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~ 232 (283)
T 3ipq_A 175 IFEFSRAMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTYVEALHAYVSIH 232 (283)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHTCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788999999999999999999999999986 9999999999999999999999754
No 47
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex, hormone/growth factor receptor complex; HET: VD4; 1.74A {Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A* 1rkh_A* 1rkg_A* 2o4r_A*
Probab=99.21 E-value=1.1e-11 Score=98.77 Aligned_cols=56 Identities=14% Similarity=0.234 Sum_probs=52.5
Q ss_pred hhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 127 TQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 127 ~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
.+++.+|++|++|.+||+||+||+|||||++ |++...|+++|++++.+|.+||..+
T Consensus 148 ~~~~~~l~~L~ld~~E~~lLkAIvLfnpd~~gL~~~~~Ve~lq~~~~~aL~~y~~~~ 204 (292)
T 2o4j_A 148 IKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAKLVEAIQDRLSNTLQTYIRCR 204 (292)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999999986 9999999999999999999999764
No 48
>3mnp_A Glucocorticoid receptor; protein-ligand complex, steroid nuclear receptor, mouse GR, hormone receptor; HET: DEX; 1.50A {Mus musculus} SCOP: a.123.1.1 PDB: 3mno_A* 3mne_A* 1m2z_A* 3k22_A* 3cld_A* 3k23_A* 3e7c_A* 1nhz_A* 1p93_A* 3bqd_A* 3h52_A* 3gn8_A* 4e2j_A*
Probab=99.21 E-value=1.2e-11 Score=97.12 Aligned_cols=57 Identities=26% Similarity=0.355 Sum_probs=52.8
Q ss_pred hhhhhhhchhcccChhHHHHHHHHHhcCC-CCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 126 CTQVIDRLEHVAVSKEEYYFLKALVLANS-DVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 126 ~~~lv~~~~~l~~~~~E~~~lkai~L~~~-d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
+.+++.+|++|++|.+||+||+||+|||| |++ |++...|+++|++++.+|.+||...
T Consensus 130 l~~~~~~l~~L~ld~~E~~lLkAIvL~np~d~~gL~~~~~ve~lq~~~~~aL~~y~~~~ 188 (261)
T 3mnp_A 130 MLFISTELQRLQVSYEEYLCMKTLLLLSSVPKEGLKSQELFDEIRMTYIKELGKAIAKR 188 (261)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHTSEEETTCCTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCcCCCccHHHHHHHHHHHHHHHHHHHHhh
Confidence 34689999999999999999999999999 876 9999999999999999999999765
No 49
>3vhv_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, non-steroidal antagonist; HET: LD1 LD2; 1.35A {Homo sapiens} SCOP: a.123.1.1 PDB: 2aax_A* 2aa6_A* 2ab2_A* 2aa2_A* 2aa5_A* 2aa7_A* 2a3i_A* 1y9r_A* 1ya3_A* 2oax_A* 2abi_A* 2q1h_A* 2q1v_A* 2q3y_A* 3ry9_A* 4fne_A* 4fn9_A*
Probab=99.20 E-value=1.1e-11 Score=97.17 Aligned_cols=57 Identities=18% Similarity=0.301 Sum_probs=52.3
Q ss_pred hhhhhhhchhcccChhHHHHHHHHHhcCC-CCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 126 CTQVIDRLEHVAVSKEEYYFLKALVLANS-DVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 126 ~~~lv~~~~~l~~~~~E~~~lkai~L~~~-d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
+.+++.+|++|++|.+||+||+||+|||| |++ |++...|+++|++++.+|.+||...
T Consensus 128 l~~~~~~l~~L~ld~~E~~lLkAIvLfnp~d~~gL~~~~~ve~lqe~~~~aL~~y~~~~ 186 (260)
T 3vhv_A 128 MHQISLQFVRLQLTFEEYTIMKVLLLLSTIPKDGLKSQAAFEEMRTNYIKELRKMVTKC 186 (260)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHTSEEETTCCTTHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHcCCcCCCCCcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999999 875 9999999999999999999999754
No 50
>1ymt_A Steroidogenic factor 1; SF-1, ligand-binding domain, ligand, phosphatidyl glycerol, CO-repressor peptide, transcription; HET: DR9; 1.20A {Mus musculus} PDB: 3f7d_A* 1yp0_A* 1yow_A* 1zdt_A*
Probab=99.20 E-value=1.3e-11 Score=95.94 Aligned_cols=57 Identities=25% Similarity=0.344 Sum_probs=52.5
Q ss_pred hhhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 126 CTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 126 ~~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
+.+++.+|++|++|.+||+||+||+|||||++ |++...|+++|++++.+|.+|+...
T Consensus 136 ~~~~~~~~~~L~ld~~E~~lLkAivL~~pd~~gL~~~~~v~~lq~~~~~aL~~y~~~~ 193 (246)
T 1ymt_A 136 AQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVKDAQEKANAALLDYTLSH 193 (246)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHTCSCGGGSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHHHHhc
Confidence 34678899999999999999999999999986 9999999999999999999999754
No 51
>3plz_A FTZ-F1 related protein; alpha helical sandwhich, family five, TRAN factor, transcription-receptor-agonist comple; HET: 470; 1.75A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yok_A* 1yuc_A* 4dor_A* 1zdu_A* 4dos_A* 1zh7_A 1pk5_A 3f5c_A
Probab=99.20 E-value=1.5e-11 Score=96.35 Aligned_cols=56 Identities=25% Similarity=0.405 Sum_probs=52.4
Q ss_pred hhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 127 TQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 127 ~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
.+++.+|++|++|.+||+||+||+|||||++ |++...|+++|++++.+|.+|+...
T Consensus 148 ~~~~~~l~~L~ld~~E~~lLkAivL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~ 204 (257)
T 3plz_A 148 QELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCN 204 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHSCTTCCSCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999999986 9999999999999999999999764
No 52
>1pdu_A DHR38, nuclear hormone receptor HR38; nuclear receptor, ligand-binding domain, hormone/growth factor receptor complex; 2.30A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=99.19 E-value=2.1e-11 Score=94.83 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=50.7
Q ss_pred hhhhhhhchhcccChhHHHHHHHHHhcCCCC-CCCchhHHHHHHHHHHHHHHHHHHh
Q psy16825 126 CTQVIDRLEHVAVSKEEYYFLKALVLANSDV-KLDEFSSLKKFRNSILSSLGDCIYV 181 (183)
Q Consensus 126 ~~~lv~~~~~l~~~~~E~~~lkai~L~~~d~-~L~~~~~v~~~~~~~~~~L~~~~~~ 181 (183)
+.+++.+|++|++|.+||+||+||+||+ |. +|++...|+++|++++.+|.+||..
T Consensus 132 l~~~~~~l~~L~ld~~E~~lLkAIvLfn-d~~gL~~~~~ve~lq~~~~~aL~~y~~~ 187 (244)
T 1pdu_A 132 IMEFSRSLHNLEIDISAFACLCALTLIT-ERHGLREPKKVEQLQMKIIGSLRDHVTY 187 (244)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHSS-CCTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999998 65 4999999999999999999999964
No 53
>1t7r_A Androgen receptor; nuclear receptor, transcription factor, ligand binding domain, AF-2, androgen, testosterone, DHT, alpha-helical sandwich; HET: DHT; 1.40A {Pan troglodytes} SCOP: a.123.1.1 PDB: 1t73_A* 1t76_A* 1t74_A* 1t79_A* 1t7m_A* 1t7f_A* 1t7t_A* 2am9_A* 2ama_A* 2amb_A* 2pnu_A* 1e3g_A* 2q7i_A* 1xj7_A* 2q7j_A* 3g0w_A* 2ihq_A* 2nw4_A* 1i37_A* 2q7k_A* ...
Probab=99.19 E-value=1.8e-11 Score=96.40 Aligned_cols=57 Identities=18% Similarity=0.289 Sum_probs=52.3
Q ss_pred hhhhhhhchhcccChhHHHHHHHHHhcCC-CCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 126 CTQVIDRLEHVAVSKEEYYFLKALVLANS-DVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 126 ~~~lv~~~~~l~~~~~E~~~lkai~L~~~-d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
+.+++.+|++|++|.+||+||+||+|||| |++ |++...|+++|++++.+|.+|+..+
T Consensus 137 i~~~~~~l~~L~ld~~E~~lLkAIvLfnp~~~~gL~~~~~ve~lq~~~~~aL~~y~~~~ 195 (269)
T 1t7r_A 137 MRHLSQEFGWLQITPQEFLCMKALLLFSIIPVDGLKNQKFFDELRMNYIKELDRIIACK 195 (269)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHTSEEETTCCTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHcCCCccCCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 35788999999999999999999999999 775 9999999999999999999999643
No 54
>2r40_D Ecdysone receptor, 20-hydroxy-ecdysone receptor; nuclear receptor ligand-binding domain, anti-parallel alpha- sandwich, ecdysone receptor, ECR, gene regulation; HET: FLC 20E EPH; 2.40A {Heliothis virescens} SCOP: a.123.1.1 PDB: 1r1k_D* 3ixp_D* 1r20_D*
Probab=99.18 E-value=1.9e-11 Score=96.17 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=52.0
Q ss_pred hhhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 126 CTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 126 ~~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
+.+++.+|++|++|.+||+||+||+||| |++ |++...|+++|++++.+|.+||..+
T Consensus 154 l~~~~~~l~~L~ld~~E~~lLkAivL~n-d~~gL~~~~~v~~lq~~~~~aL~~y~~~~ 210 (266)
T 2r40_D 154 LLHFCRCMYSMMMDNVHYALLTAIVIFS-DRPGLEQPLLVEEIQRYYLNTLRVYILNQ 210 (266)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHTS-CCTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCHHHHHHHhhheeec-CCCCCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999 876 9999999999999999999999764
No 55
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens}
Probab=99.17 E-value=2.8e-11 Score=98.70 Aligned_cols=56 Identities=25% Similarity=0.405 Sum_probs=47.8
Q ss_pred hhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 127 TQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 127 ~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
.+++.+|++|++|.+||+||+||+|||||+. |++...|+++|++++.+|.+|+...
T Consensus 243 ~~l~~~l~~L~ld~~EyalLkAIvLfnpd~~gLs~~~~Ve~lQe~~~~aL~~y~~~~ 299 (352)
T 3tx7_B 243 QELVAKLRSLQFDQREFVCLKFLVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCN 299 (352)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHSCSCC------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 4688899999999999999999999999986 9999999999999999999999754
No 56
>1nrl_A Orphan nuclear receptor PXR; PXR, xenobiotic, SRC-1, ligand binding domain, transcription; HET: SRL; 2.00A {Homo sapiens} SCOP: a.123.1.1 PDB: 1ilh_A* 1ilg_A* 1m13_A* 2qnv_A* 3r8d_A* 3ctb_A 3ctc_A 3hvl_A* 1skx_A* 2o9i_A*
Probab=99.17 E-value=1.2e-11 Score=99.48 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=52.8
Q ss_pred hhhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 126 CTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 126 ~~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
+.+++.+|++|++|.+||+||+||+|||||++ |.+...|+.+|++|+.+|.+||...
T Consensus 205 i~~~~~~l~~L~ld~~E~alLkAIvLfnpd~~gL~~~~~Ve~lqe~~~~aL~~y~~~~ 262 (316)
T 1nrl_A 205 MLKFHYMLKKLQLHEEEYVLMQAISLFSPDRPGVLQHRVVDQLQEQFAITLKSYIECN 262 (316)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHTCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 34678899999999999999999999999986 9999999999999999999999764
No 57
>1sqn_A PR, progesterone receptor; nuclear receptor, steroid receptor, norethindrone, birth control, hormone/growth factor receptior complex; HET: NDR; 1.45A {Homo sapiens} SCOP: a.123.1.1 PDB: 3g8o_A* 3g8n_A* 3d90_A* 1e3k_A* 1sr7_A* 1zuc_B* 3zr7_A* 2w8y_A* 3zra_A* 3zrb_A* 4a2j_A* 4apu_A* 1a28_A* 2ovh_A* 2ovm_A* 3hq5_A* 3kba_A*
Probab=99.16 E-value=2.5e-11 Score=95.18 Aligned_cols=56 Identities=25% Similarity=0.385 Sum_probs=51.9
Q ss_pred hhhhhhhchhcccChhHHHHHHHHHhcCC-CCC-CCchhHHHHHHHHHHHHHHHHHHh
Q psy16825 126 CTQVIDRLEHVAVSKEEYYFLKALVLANS-DVK-LDEFSSLKKFRNSILSSLGDCIYV 181 (183)
Q Consensus 126 ~~~lv~~~~~l~~~~~E~~~lkai~L~~~-d~~-L~~~~~v~~~~~~~~~~L~~~~~~ 181 (183)
+.+++.+|++|++|.+||+||+||+|||| |++ |++...|+++|++++.+|.+||..
T Consensus 129 i~~~~~~l~~L~ld~~E~~lLkAIvLfnp~~~~gL~~~~~ve~lq~~~~~aL~~y~~~ 186 (261)
T 1sqn_A 129 MWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPLEGLRSQTQFEEMRSSYIRELIKAIGL 186 (261)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHTSEECTTCCTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccccccHHHHHHHHHHHHHHHHHHHHh
Confidence 34678999999999999999999999999 775 999999999999999999999964
No 58
>2p1t_A Retinoic acid receptor RXR-alpha; protein-ligand complex, hormone receptor; HET: 3TN; 1.80A {Homo sapiens} SCOP: a.123.1.1 PDB: 1mvc_A* 1mzn_A* 1mv9_A* 2p1u_A* 2p1v_A* 2zxz_A* 2zy0_A* 3fug_A* 3nsp_A 3nsq_A* 3r29_A 3r2a_A* 3r5m_A* 3e94_A* 3kwy_A* 1fby_A* 3uvv_B* 3fc6_A* 1rdt_A* 3fal_A* ...
Probab=99.16 E-value=4.1e-11 Score=92.69 Aligned_cols=56 Identities=25% Similarity=0.383 Sum_probs=52.2
Q ss_pred hhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 127 TQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 127 ~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
.+++.+|++|++|.+||++|+||+|++||.. |.+...|+++|++++.+|.+|+...
T Consensus 129 ~~~~~~l~~L~ld~~E~~~Lkai~l~~pd~~gl~~~~~ve~~q~~~~~~L~~y~~~~ 185 (240)
T 2p1t_A 129 TELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHK 185 (240)
T ss_dssp HHTHHHHHHTTCCHHHHHHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999986 9999999999999999999999754
No 59
>3vhu_A Mineralocorticoid receptor; nuclear receptor, transcription factor, activating mutation, hypertension, antagonist, spironolactone; HET: SNL; 2.11A {Homo sapiens}
Probab=99.15 E-value=2.4e-11 Score=96.86 Aligned_cols=57 Identities=18% Similarity=0.301 Sum_probs=51.5
Q ss_pred hhhhhhhchhcccChhHHHHHHHHHhcCC-CCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 126 CTQVIDRLEHVAVSKEEYYFLKALVLANS-DVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 126 ~~~lv~~~~~l~~~~~E~~~lkai~L~~~-d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
+.+++.+|++|++|.+||+||+||+|||| |++ |++...|+++|++++.+|.+||...
T Consensus 162 l~~~~~~l~~L~ld~~EyalLkAIvLfnp~d~~gL~~~~~Ve~lQe~~~~aL~~y~~~~ 220 (294)
T 3vhu_A 162 MHQISLQFVRLQLTFEEYTIMKVLLLLSTIPKDGLKSQAAFEEMRTNYIKELRKMVTKC 220 (294)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHTSEEETTCCTTHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 45688999999999999999999999999 875 9999999999999999999999653
No 60
>2nxx_E Ecdysone receptor (ECR, NRH1); hormone receptor, APO and holo ligand binding pocket, hormone/growth factor complex; HET: P1A; 2.75A {Tribolium castaneum}
Probab=99.15 E-value=4.4e-11 Score=93.08 Aligned_cols=56 Identities=20% Similarity=0.203 Sum_probs=51.2
Q ss_pred hhhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 126 CTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 126 ~~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
+.+++.+|++|++|.+||+||+||+||+ |++ |++...|+++|++++.+|.+|+...
T Consensus 138 i~~~~~~l~~L~ld~~E~~lLkAivL~~-d~~gL~~~~~v~~lq~~~~~aL~~y~~~~ 194 (248)
T 2nxx_E 138 LLHFCRTMYSMRVDNAEYALLTAIVIFS-ERPALIEGWKVEKIQEIYLEALRAYVDNR 194 (248)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHTC-CCSSCTTHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3468899999999999999999999997 765 9999999999999999999999764
No 61
>1z5x_E Ecdysone receptor ligand binding domain; ponasterone A, nuclear receptor, ECR, USP, hormone/growth factor receptor complex; HET: P1A; 3.07A {Bemisia tabaci}
Probab=99.12 E-value=6.1e-11 Score=95.21 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=51.2
Q ss_pred hhhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 126 CTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 126 ~~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
+.+++.+|++|++|.+||+||+||+||+ |++ |.+...|+++|++++.+|.+||...
T Consensus 202 i~~~~~~l~~L~ld~~E~alLkAIvLf~-d~~gL~~~~~Ve~lqe~~~~aL~~y~~~~ 258 (310)
T 1z5x_E 202 LLRFCRHMCAMKVDNAEYALLTAIVIFS-ERPSLSEGWKVEKIQEIYIEALKAYVENR 258 (310)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHTC-CCTTCTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcC-CCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999999999999999997 765 9999999999999999999999754
No 62
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens}
Probab=99.11 E-value=3.9e-11 Score=95.89 Aligned_cols=55 Identities=25% Similarity=0.368 Sum_probs=47.6
Q ss_pred hhhhhhchhcccChhHHHHHHHHHhcCCCC--------C-CCchhHHHHHHHHHHHHHHHHHHh
Q psy16825 127 TQVIDRLEHVAVSKEEYYFLKALVLANSDV--------K-LDEFSSLKKFRNSILSSLGDCIYV 181 (183)
Q Consensus 127 ~~lv~~~~~l~~~~~E~~~lkai~L~~~d~--------~-L~~~~~v~~~~~~~~~~L~~~~~~ 181 (183)
.+++.+|++|++|.+||+||+||+|||||+ + |.+...|+++|++++.+|.+||..
T Consensus 132 ~~~~~~l~~L~ld~~Ey~lLkAIvLfnpd~~~LS~~~~~gL~~~~~ve~lqe~~~~aL~~y~~~ 195 (298)
T 2ocf_A 132 LATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLIHLMAK 195 (298)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCC-----------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHhhhCcCHHHHHHHHHHHHcCCCccccccccccccccHHHHHHHHHHHHHHHHHHHHh
Confidence 457899999999999999999999999997 4 778889999999999999999965
No 63
>1xpc_A Estrogen receptor; nuclear receptor, transcription factor, ER-alpha, antagonist hormone-growth factor receptor complex; HET: AIT; 1.60A {Homo sapiens} SCOP: a.123.1.1 PDB: 1sj0_A* 1xp1_A* 1xp9_A* 1xp6_A* 1yim_A* 1yin_A* 3ert_A* 1r5k_A* 3erd_A* 1l2i_A* 2iok_A* 1a52_A* 2ouz_A* 1ere_A* 1err_A* 2qxs_A* 3q95_A* 3q97_A* 2b1z_A* 1zky_A* ...
Probab=99.10 E-value=2.6e-11 Score=94.31 Aligned_cols=56 Identities=25% Similarity=0.355 Sum_probs=49.8
Q ss_pred hhhhhhchhcccChhHHHHHHHHHhcCCCC--------C-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 127 TQVIDRLEHVAVSKEEYYFLKALVLANSDV--------K-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 127 ~~lv~~~~~l~~~~~E~~~lkai~L~~~d~--------~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
.+++.+|++|++|.+||+||+||+|||||+ + |.+...|+++|++++.+|.+|+...
T Consensus 123 ~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~~ls~~~~~gl~~~~~v~~lq~~~~~aL~~y~~~~ 187 (248)
T 1xpc_A 123 LATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLIHLMAKA 187 (248)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTTTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHcCCcccccccccccccccHHHHHHHHHHHHHHHHHHHHcc
Confidence 457899999999999999999999999997 3 5667789999999999999999753
No 64
>3up3_A Acedaf-12; ligand binding domain, nematode, steroid binding protein- transcription complex; HET: XCA; 1.25A {Ancylostoma ceylanicum} PDB: 3up0_A*
Probab=99.07 E-value=4.2e-11 Score=93.01 Aligned_cols=56 Identities=7% Similarity=0.080 Sum_probs=50.6
Q ss_pred hhhhhhhchh-cccChhHHHHHHHHHhcCCCCCCCch---hHHHHHHHHHHHHHHHHHHh
Q psy16825 126 CTQVIDRLEH-VAVSKEEYYFLKALVLANSDVKLDEF---SSLKKFRNSILSSLGDCIYV 181 (183)
Q Consensus 126 ~~~lv~~~~~-l~~~~~E~~~lkai~L~~~d~~L~~~---~~v~~~~~~~~~~L~~~~~~ 181 (183)
+.+++.+|++ |++|.+||+||+||+||+|+.+|.++ ..|+++|++++.+|.+||..
T Consensus 133 l~~~~~~~~~~L~ld~~E~alLkAivLfsp~~gL~~~~~~~~Ve~lQe~~~~aL~~y~~~ 192 (243)
T 3up3_A 133 FLQFFKIFHEDIRSNDLVISMIMLIVLFSPRDSITDPEDRRIIARHHEQFSALLNRYLES 192 (243)
T ss_dssp HHHHHHTSCHHHHTCHHHHHHHHHHHHSCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889997 99999999999999999999559876 79999999999999999964
No 65
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor, transcription factor, agonist; HET: 196; 2.03A {Homo sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Probab=99.06 E-value=1.5e-10 Score=91.17 Aligned_cols=55 Identities=24% Similarity=0.303 Sum_probs=46.9
Q ss_pred hhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCc-------hhHHHHHHHHHHHHHHHHHHh
Q psy16825 127 TQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDE-------FSSLKKFRNSILSSLGDCIYV 181 (183)
Q Consensus 127 ~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~-------~~~v~~~~~~~~~~L~~~~~~ 181 (183)
.+++.+|++|++|.+||+||+||+|||||++ |.+ ...|+++|++++.+|.+|+..
T Consensus 119 ~~~~~~l~~L~ld~~E~~lLkAIvLfnpd~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~~ 181 (268)
T 1yye_A 119 LATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAK 181 (268)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHTCCC----------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999975 754 568999999999999999965
No 66
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone receptor-activator; HET: PTR EST; 1.50A {Homo sapiens} SCOP: a.123.1.1 PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A* 2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A* 1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A* ...
Probab=99.03 E-value=3e-10 Score=87.82 Aligned_cols=56 Identities=23% Similarity=0.289 Sum_probs=48.7
Q ss_pred hhhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCc-------hhHHHHHHHHHHHHHHHHHHh
Q psy16825 126 CTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDE-------FSSLKKFRNSILSSLGDCIYV 181 (183)
Q Consensus 126 ~~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~-------~~~v~~~~~~~~~~L~~~~~~ 181 (183)
+.+++.+|++|++|.+||+||+||+|||||++ |++ ...|+.+|+++..+|.+|+..
T Consensus 120 l~~~~~~l~~L~ld~~E~~lLkAivL~~pd~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~~ 183 (240)
T 3oll_A 120 LLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAK 183 (240)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHCSCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 34688999999999999999999999999975 654 357889999999999999964
No 67
>1pzl_A Hepatocyte nuclear factor 4-alpha; transcription; HET: MYR; 2.10A {Homo sapiens} SCOP: a.123.1.1 PDB: 3fs1_A* 1m7w_A* 1lv2_A*
Probab=99.01 E-value=2.5e-10 Score=87.92 Aligned_cols=57 Identities=25% Similarity=0.463 Sum_probs=52.7
Q ss_pred hhhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 126 CTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 126 ~~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
+.+++.+|.+|++|.+||++|+|++|++||.+ |++...|+++|++++.+|.+|+..+
T Consensus 128 ~~~l~~~l~~L~ld~~E~~~L~ai~l~~~~~~~l~~~~~ve~~q~~~~~~L~~y~~~~ 185 (237)
T 1pzl_A 128 LDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLSDPGKIKRLRSQVQVSLEDYINDR 185 (237)
T ss_dssp HHHTHHHHHHHTCCHHHHHHHHHHHHCCTTCTTCSCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999999986 9999999999999999999998653
No 68
>3f5c_B Nuclear receptor subfamily 0 group B member 1; transcriptional corepressor, regulatory complex, DNA-binding, lipid-binding, metal-binding; 3.00A {Mus musculus}
Probab=99.00 E-value=5.3e-10 Score=87.98 Aligned_cols=59 Identities=19% Similarity=0.250 Sum_probs=55.1
Q ss_pred chhhhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 124 ISCTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 124 ~~~~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
..+.+++.+|++|++|.+||++|+||+|+|||++ |.+...|+++|++++.+|.+||...
T Consensus 157 ~~l~~~~~~l~~L~ld~~E~~lLkAivL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~ 216 (268)
T 3f5c_B 157 QAIKSFFFKCWSLNIDTKEYAYLKGTVLFNPDLPGLQCVKYIEGLQWRTQQILTEHIRMM 216 (268)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999986 9999999999999999999999764
No 69
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor, antagonist transcription receptor; HET: ETC; 2.95A {Homo sapiens} SCOP: a.123.1.1
Probab=99.00 E-value=3.2e-10 Score=89.37 Aligned_cols=55 Identities=24% Similarity=0.306 Sum_probs=45.7
Q ss_pred hhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCch-------hHHHHHHHHHHHHHHHHHHh
Q psy16825 127 TQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEF-------SSLKKFRNSILSSLGDCIYV 181 (183)
Q Consensus 127 ~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~-------~~v~~~~~~~~~~L~~~~~~ 181 (183)
.+++.+|++|++|.+||+||+||+|||||+. |++. ..|+++|++++.+|.+||..
T Consensus 147 ~~~~~~l~~L~ld~~E~~lLkAIvLfnpd~~gLs~~~~~~~~~~~v~~~q~~~~~aL~~y~~~ 209 (271)
T 1l2j_A 147 LATTSRFRELKLQHKEYLCVKAMILLNSSMYPLVTATQDADSSRKLAHLLNAVTDALVWVIAK 209 (271)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHC----CCCCGGGHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHcCCCcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999975 7653 46778899999999999964
No 70
>1g2n_A Ultraspiracle protein; antiparallel alpha-helical sandwich, structural proteomics in europe, spine, structural genomics, gene regulation; HET: EPH; 1.65A {Heliothis virescens} SCOP: a.123.1.1 PDB: 2r40_A* 1r20_A* 1r1k_A* 3ixp_A*
Probab=98.98 E-value=7.1e-10 Score=86.95 Aligned_cols=58 Identities=24% Similarity=0.370 Sum_probs=54.1
Q ss_pred hhhhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 125 SCTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 125 ~~~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
.+.+++.+|++|++|.+||+||+||+|||||++ |++...|+++|++++.+|.+|+...
T Consensus 146 ~~~~~~~~~~~L~ld~~E~~lLkAivL~npd~~gL~~~~~ve~lq~~~~~aL~~y~~~~ 204 (264)
T 1g2n_A 146 VLSELSLKMRTLRVDQAEYVALKAIILLNPDVKGLKNRQEVEVLREKMFLCLDEYCRRS 204 (264)
T ss_dssp HHHHTHHHHHHTTCCHHHHHHHHHHHHSCTTCTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 456899999999999999999999999999986 9999999999999999999999754
No 71
>1hg4_A Ultraspiracle; nuclear hormone receptor, transcription factor, ligand binding; HET: LPP; 2.4A {Drosophila melanogaster} SCOP: a.123.1.1
Probab=98.94 E-value=1.2e-09 Score=86.34 Aligned_cols=57 Identities=16% Similarity=0.357 Sum_probs=53.4
Q ss_pred hhhhhhhchhcccChhHHHHHHHHHhcCCCCC-CCchhHHHHHHHHHHHHHHHHHHhc
Q psy16825 126 CTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 126 ~~~lv~~~~~l~~~~~E~~~lkai~L~~~d~~-L~~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
+.+++.+|++|++|.+||+||+||+|||||++ |++...|+++|++++.+|.+|+...
T Consensus 161 ~~~~~~~~~~L~ld~~E~~lLkAivL~npd~~gL~~~~~v~~lq~~~~~aL~~y~~~~ 218 (279)
T 1hg4_A 161 LSELSVKMKRLNLDRRELSCLKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLE 218 (279)
T ss_dssp HHHTHHHHHHHTCCHHHHHHHHHHHHSCTTSTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999986 9999999999999999999999754
No 72
>3gyt_A Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily; nuclear receptor, ligand binding domain, dafachronic acid, nematode, DNA-binding, metal-binding, nucleus, receptor; HET: DL4; 2.40A {Strongyloides stercoralis} PDB: 3gyu_A*
Probab=98.90 E-value=8.7e-10 Score=85.62 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=41.9
Q ss_pred cccChhHHHHHHHHHhcCCCCC-CC---chhHHHHHHHHHHHHHHHHHHhc
Q psy16825 136 VAVSKEEYYFLKALVLANSDVK-LD---EFSSLKKFRNSILSSLGDCIYVL 182 (183)
Q Consensus 136 l~~~~~E~~~lkai~L~~~d~~-L~---~~~~v~~~~~~~~~~L~~~~~~~ 182 (183)
+..+..||+||+||+||+||++ |. +...|+++|++++.+|.+|+...
T Consensus 143 l~~~~~E~alLkAivLfspDr~gL~~~~d~~~Ve~lQe~~~~aL~~y~~~~ 193 (244)
T 3gyt_A 143 VRKNDLAIDIIVLMVLFDSKREGLVSQQDKETVEKLHRNYESLLHRYLYSI 193 (244)
T ss_dssp HHTCHHHHHHHHHHHHSCTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhccCCCCCccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456679999999999999987 98 78899999999999999999754
No 73
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.73 E-value=0.72 Score=26.64 Aligned_cols=55 Identities=18% Similarity=0.434 Sum_probs=33.3
Q ss_pred CCCCCCCCCCcccccCCCCcccccccccccchhhhhhccccCCceeecCCCCCccccccccccccchhh
Q psy16825 2 GIKEEELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRF 70 (183)
Q Consensus 2 ~~~~~~~~~~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~CR~ 70 (183)
|+.++......|.||++.. .++.|.+|...|.-. |....-=.+. ...+.|..|+-
T Consensus 1 ~s~g~~~~~~~C~vC~~~g-----~ll~Cd~C~~~~H~~--------Cl~ppl~~~p-~g~W~C~~C~~ 55 (56)
T 2yql_A 1 GSSGSSGHEDFCSVCRKSG-----QLLMCDTCSRVYHLD--------CLDPPLKTIP-KGMWICPRCQD 55 (56)
T ss_dssp CCCCCCSSCCSCSSSCCSS-----CCEECSSSSCEECSS--------SSSSCCCSCC-CSSCCCHHHHC
T ss_pred CCCCcCCCCCCCccCCCCC-----eEEEcCCCCcceECc--------cCCCCcCCCC-CCceEChhhhC
Confidence 3445555567799999852 577899998777554 5331111111 24567887753
No 74
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=79.85 E-value=0.84 Score=27.92 Aligned_cols=56 Identities=18% Similarity=0.329 Sum_probs=35.3
Q ss_pred CCCCCCcccccCCCCcccccccccccchhhhhhccccCCceeecCCCCCccccccccccccchhhhH
Q psy16825 6 EELPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQK 72 (183)
Q Consensus 6 ~~~~~~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~CR~~K 72 (183)
.......|.||++..+.---..+.|.+|...|--. |-.-.. + -.+.+.|..|+..+
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~--------Cl~~~~--v-P~g~W~C~~C~~~~ 67 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQE--------CYGVPY--I-PEGQWLCRHCLQSR 67 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHH--------HHTCSS--C-CSSCCCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccc--------cCCCCc--C-CCCCcCCccCcCcC
Confidence 33445679999987654445667899997666443 432211 2 23567899998765
No 75
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=79.62 E-value=1 Score=26.79 Aligned_cols=57 Identities=18% Similarity=0.462 Sum_probs=34.4
Q ss_pred CCCCcccccCCCCcccccccccccchhhhhhccccCCceeecCCCCCcc--ccccccccccchhhhH
Q psy16825 8 LPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCE--INKRRRKACQACRFQK 72 (183)
Q Consensus 8 ~~~~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~--~~k~~r~~C~~CR~~K 72 (183)
.....|.||+...+.---..+.|.+|..-|.-. |-...--. +.....+.|..|...+
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~--------C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQL--------CHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETT--------TSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhh--------hCCCcccccccCCCCCEECCCCcCcc
Confidence 345579999987544334567899997666443 53321111 1123567899987654
No 76
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.28 E-value=0.84 Score=32.20 Aligned_cols=32 Identities=25% Similarity=0.678 Sum_probs=26.9
Q ss_pred CCCcccccCCCCc---ccccccccccchhhhhhcc
Q psy16825 9 PRRLCLVCGDVAS---GFHYGVASCEACKAFFKRT 40 (183)
Q Consensus 9 ~~~~C~vC~~~~~---~~hyg~~~C~~C~~FFrR~ 40 (183)
....|.-||.+.. ...||++.|-.|++.+|..
T Consensus 28 ~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~L 62 (149)
T 2crw_A 28 TNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSL 62 (149)
T ss_dssp TTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHH
T ss_pred CCCcCCCCcCCCCCcEEeccCEEEchhcchhhccC
Confidence 3568999998764 4799999999999998874
No 77
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=78.31 E-value=0.61 Score=32.32 Aligned_cols=31 Identities=19% Similarity=0.596 Sum_probs=26.4
Q ss_pred CCcccccCCCCc---ccccccccccchhhhhhcc
Q psy16825 10 RRLCLVCGDVAS---GFHYGVASCEACKAFFKRT 40 (183)
Q Consensus 10 ~~~C~vC~~~~~---~~hyg~~~C~~C~~FFrR~ 40 (183)
...|.-||.+.. ...||++.|-.|++..|..
T Consensus 27 N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~l 60 (134)
T 2iqj_A 27 NKFCADCQSKGPRWASWNIGVFICIRCAGIHRNL 60 (134)
T ss_dssp GGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHH
T ss_pred CCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcC
Confidence 467999998764 4899999999999998874
No 78
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=78.14 E-value=1 Score=31.64 Aligned_cols=32 Identities=22% Similarity=0.643 Sum_probs=27.0
Q ss_pred CCCcccccCCCCc---ccccccccccchhhhhhcc
Q psy16825 9 PRRLCLVCGDVAS---GFHYGVASCEACKAFFKRT 40 (183)
Q Consensus 9 ~~~~C~vC~~~~~---~~hyg~~~C~~C~~FFrR~ 40 (183)
....|.-||.+.. ...||++.|-.|++..|..
T Consensus 37 ~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~L 71 (147)
T 3dwd_A 37 ENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGL 71 (147)
T ss_dssp TTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHH
T ss_pred CCCccCCCCCCCCCeEEecccEeEhHhhChHHhcC
Confidence 4568999998775 4799999999999998864
No 79
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=76.66 E-value=0.76 Score=32.09 Aligned_cols=31 Identities=19% Similarity=0.560 Sum_probs=26.4
Q ss_pred CCcccccCCCCc---ccccccccccchhhhhhcc
Q psy16825 10 RRLCLVCGDVAS---GFHYGVASCEACKAFFKRT 40 (183)
Q Consensus 10 ~~~C~vC~~~~~---~~hyg~~~C~~C~~FFrR~ 40 (183)
...|.-||.+.. ...||++.|-.|++.+|..
T Consensus 25 N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~L 58 (140)
T 2olm_A 25 NRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGL 58 (140)
T ss_dssp GGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTS
T ss_pred CCcCCCCCCCCCCceeeccCEEEchhccchhccC
Confidence 567999998764 4799999999999998875
No 80
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.94 E-value=0.98 Score=31.53 Aligned_cols=31 Identities=19% Similarity=0.568 Sum_probs=26.1
Q ss_pred CCcccccCCCCc---ccccccccccchhhhhhcc
Q psy16825 10 RRLCLVCGDVAS---GFHYGVASCEACKAFFKRT 40 (183)
Q Consensus 10 ~~~C~vC~~~~~---~~hyg~~~C~~C~~FFrR~ 40 (183)
...|.-||.+.. ...||++.|-.|++..|..
T Consensus 29 N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~L 62 (141)
T 2crr_A 29 NKYCADCEAKGPRWASWNIGVFICIRCAGIHRNL 62 (141)
T ss_dssp GSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHH
T ss_pred CCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcC
Confidence 357999998764 4799999999999998874
No 81
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=75.45 E-value=2.3 Score=25.32 Aligned_cols=33 Identities=21% Similarity=0.470 Sum_probs=24.7
Q ss_pred CCCcccccCCCCcc----cccccccccchhhhhhccc
Q psy16825 9 PRRLCLVCGDVASG----FHYGVASCEACKAFFKRTI 41 (183)
Q Consensus 9 ~~~~C~vC~~~~~~----~hyg~~~C~~C~~FFrR~v 41 (183)
....|..|+...+- -.+|..-|++|-.+|+..-
T Consensus 6 ~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~ 42 (63)
T 3dfx_A 6 AGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHN 42 (63)
T ss_dssp TTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHS
T ss_pred CCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcC
Confidence 34569999987652 3467788999999998753
No 82
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=75.01 E-value=0.77 Score=27.56 Aligned_cols=33 Identities=24% Similarity=0.584 Sum_probs=22.3
Q ss_pred CCCCCcccccCCCCccccccccccc-chhhhhhcc
Q psy16825 7 ELPRRLCLVCGDVASGFHYGVASCE-ACKAFFKRT 40 (183)
Q Consensus 7 ~~~~~~C~vC~~~~~~~hyg~~~C~-~C~~FFrR~ 40 (183)
+.+..+|.+|+.+.+.-. ..+.|. +|..+|.+.
T Consensus 5 ~~~~~~C~~C~~p~~~~~-~mI~CD~~C~~WfH~~ 38 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQ-DAILCEASCQKWFHRI 38 (65)
T ss_dssp ----CBCTTTCSBCCTTS-CEEEBTTTTCCEEEHH
T ss_pred CCCcCcCccCCCccCCCC-CeEecccCccccCchh
Confidence 455678999999865433 345699 999999876
No 83
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=74.78 E-value=0.77 Score=31.96 Aligned_cols=31 Identities=19% Similarity=0.560 Sum_probs=26.2
Q ss_pred CCcccccCCCCc---ccccccccccchhhhhhcc
Q psy16825 10 RRLCLVCGDVAS---GFHYGVASCEACKAFFKRT 40 (183)
Q Consensus 10 ~~~C~vC~~~~~---~~hyg~~~C~~C~~FFrR~ 40 (183)
...|.-||.+.. ...||++.|-.|++..|..
T Consensus 36 N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~L 69 (138)
T 2owa_A 36 NRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKM 69 (138)
T ss_dssp GGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTT
T ss_pred CCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCC
Confidence 467999998764 4799999999999998874
No 84
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=74.37 E-value=0.87 Score=31.92 Aligned_cols=31 Identities=26% Similarity=0.698 Sum_probs=26.3
Q ss_pred CCcccccCCCCc---ccccccccccchhhhhhcc
Q psy16825 10 RRLCLVCGDVAS---GFHYGVASCEACKAFFKRT 40 (183)
Q Consensus 10 ~~~C~vC~~~~~---~~hyg~~~C~~C~~FFrR~ 40 (183)
...|.-||.+.. ...||++.|-.|++..|..
T Consensus 37 N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~L 70 (144)
T 2p57_A 37 NKACFDCGAKNPSWASITYGVFLCIDCSGVHRSL 70 (144)
T ss_dssp GGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHH
T ss_pred CCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCC
Confidence 467999998764 4799999999999998874
No 85
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=74.00 E-value=2 Score=25.34 Aligned_cols=54 Identities=17% Similarity=0.474 Sum_probs=32.9
Q ss_pred CCcccccCCCCcccccccccccchhhhhhccccCCceeecCCCCCccccccccccccchhhhH
Q psy16825 10 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQK 72 (183)
Q Consensus 10 ~~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~CR~~K 72 (183)
...|.+|+.+..... -++.|..|..+|.-. |.+-..=.........|..|+-++
T Consensus 6 ~~~C~~C~~~~~~~~-~mI~Cd~C~~WfH~~--------Cvgl~~~~~~~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 6 SGQCGACGESYAADE-FWICCDLCEMWFHGK--------CVKITPARAEHIKQYKCPSCSNKS 59 (64)
T ss_dssp CCCCSSSCCCCCSSS-CEEECSSSCCEEETT--------TTTCCTTGGGGCSSCCCHHHHTTT
T ss_pred CCCCCCCCCccCCCC-CEEEccCCCCCCCcc--------ccCcChhHhcCCCcEECCCCcCcC
Confidence 456999998864211 246799999888654 643222222223467888887654
No 86
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=72.39 E-value=1.6 Score=27.75 Aligned_cols=52 Identities=19% Similarity=0.418 Sum_probs=33.7
Q ss_pred CCcccccCCCCcccccccccccchhhhhhccccCCceeecCCCCCccccccccccccchhhhH
Q psy16825 10 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQK 72 (183)
Q Consensus 10 ~~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~CR~~K 72 (183)
...|.||++..+.---.++.|.+|...|.-. |-.-.. + -.+.+.|..|....
T Consensus 25 ~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~--------Cl~p~~--v-P~g~W~C~~C~~~~ 76 (88)
T 2l43_A 25 DAVCSICMDGESQNSNVILFCDMCNLAVHQE--------CYGVPY--I-PEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCSSCCSSSSCSEEEEEECSSSCCCCCHH--------HHTCSS--C-CSSCCCCHHHHHHT
T ss_pred CCcCCcCCCCCCCCCCCEEECCCCCchhhcc--------cCCCCc--c-CCCceECccccCcc
Confidence 3579999987644444677899997666444 532211 2 23578899997654
No 87
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=69.90 E-value=1.5 Score=31.31 Aligned_cols=31 Identities=19% Similarity=0.529 Sum_probs=26.4
Q ss_pred CCcccccCCCCc---ccccccccccchhhhhhcc
Q psy16825 10 RRLCLVCGDVAS---GFHYGVASCEACKAFFKRT 40 (183)
Q Consensus 10 ~~~C~vC~~~~~---~~hyg~~~C~~C~~FFrR~ 40 (183)
...|.-||.+.. ...||++.|-.|++..|..
T Consensus 22 N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~L 55 (163)
T 3sub_A 22 NNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSL 55 (163)
T ss_dssp GGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHT
T ss_pred CCccccCCCCCCCeEEecCCeeEHHhhhHHhcCC
Confidence 567999998765 4799999999999998863
No 88
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=66.28 E-value=2.8 Score=22.90 Aligned_cols=30 Identities=27% Similarity=0.466 Sum_probs=21.8
Q ss_pred CcccccCCCCcc----cccccccccchhhhhhcc
Q psy16825 11 RLCLVCGDVASG----FHYGVASCEACKAFFKRT 40 (183)
Q Consensus 11 ~~C~vC~~~~~~----~hyg~~~C~~C~~FFrR~ 40 (183)
..|..|+...+- --+|..-|++|-.+|+..
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~ 35 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLH 35 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHH
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHh
Confidence 358888876542 235777899999998765
No 89
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=66.05 E-value=4.4 Score=22.46 Aligned_cols=31 Identities=32% Similarity=0.624 Sum_probs=22.6
Q ss_pred CCcccccCCCCcc----cccccccccchhhhhhcc
Q psy16825 10 RRLCLVCGDVASG----FHYGVASCEACKAFFKRT 40 (183)
Q Consensus 10 ~~~C~vC~~~~~~----~hyg~~~C~~C~~FFrR~ 40 (183)
...|..|+...+- --.|..-|++|-.+|+..
T Consensus 4 ~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~ 38 (46)
T 1gnf_A 4 ARECVNCGATATPLWRRDRTGHYLCNACGLYHKMN 38 (46)
T ss_dssp SCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHT
T ss_pred CCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHc
Confidence 4569999876642 235667899999988765
No 90
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=64.24 E-value=2.9 Score=33.01 Aligned_cols=32 Identities=22% Similarity=0.628 Sum_probs=27.3
Q ss_pred CCCcccccCCCCcc---cccccccccchhhhhhcc
Q psy16825 9 PRRLCLVCGDVASG---FHYGVASCEACKAFFKRT 40 (183)
Q Consensus 9 ~~~~C~vC~~~~~~---~hyg~~~C~~C~~FFrR~ 40 (183)
....|.-||.+... ..||++.|-.|++.+|..
T Consensus 36 ~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~ 70 (329)
T 3o47_A 36 ENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGL 70 (329)
T ss_dssp TTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHH
T ss_pred CCCcCCCCCCCCCCeEEecCCEEEChhhhhhhccc
Confidence 35689999987754 799999999999999874
No 91
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=63.62 E-value=4.4 Score=24.08 Aligned_cols=49 Identities=24% Similarity=0.522 Sum_probs=30.8
Q ss_pred CCcccccCCCCcccccccccccchhhhhhccccCCceeecCCCCCccccccccccccchhhhH
Q psy16825 10 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQK 72 (183)
Q Consensus 10 ~~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~CR~~K 72 (183)
...|.||++.. ..+.|.+|...|.-. |....-=.+. ...+.|..|...+
T Consensus 8 ~~~C~vC~~~g-----~ll~CD~C~~~fH~~--------Cl~ppl~~~P-~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 8 EDECAVCRDGG-----ELICCDGCPRAFHLA--------CLSPPLREIP-SGTWRCSSCLQAT 56 (66)
T ss_dssp CCSBSSSSCCS-----SCEECSSCCCEECTT--------TSSSCCSSCC-SSCCCCHHHHHTC
T ss_pred CCCCccCCCCC-----CEEEcCCCChhhccc--------ccCCCcCcCC-CCCeECccccCcc
Confidence 45699999753 477899998776554 5332111121 2467898887544
No 92
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=62.81 E-value=11 Score=21.98 Aligned_cols=49 Identities=22% Similarity=0.514 Sum_probs=29.7
Q ss_pred CCCcccccCCCCcccccccccccchhhhhhccccCCceeecCCCCCccccccccccccchhhh
Q psy16825 9 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQ 71 (183)
Q Consensus 9 ~~~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~CR~~ 71 (183)
....|.||++.. ..+.|.+|...|.-. |....-=.+. ...+.|..|+.+
T Consensus 8 ~~~~C~vC~~~g-----~ll~Cd~C~~~fH~~--------Cl~ppl~~~p-~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDGG-----ELLCCDTCPSSYHIH--------CLNPPLPEIP-NGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCCS-----SCBCCSSSCCCBCSS--------SSSSCCSSCC-SSCCCCTTTTTT
T ss_pred CCCcCCCCCCCC-----CEEEcCCCCHHHccc--------ccCCCcCcCC-CCccCChhhcCc
Confidence 356799999742 478899998766544 5331111121 246788888643
No 93
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=61.03 E-value=5.2 Score=23.99 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=23.6
Q ss_pred CCCCcccccCCCCcc----cccccccccchhhhhhcc
Q psy16825 8 LPRRLCLVCGDVASG----FHYGVASCEACKAFFKRT 40 (183)
Q Consensus 8 ~~~~~C~vC~~~~~~----~hyg~~~C~~C~~FFrR~ 40 (183)
.....|..|+...+- -..|..-|++|-.+|+..
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~ 43 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLH 43 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHc
Confidence 345679999986643 234667899999988754
No 94
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=60.70 E-value=3 Score=27.83 Aligned_cols=26 Identities=23% Similarity=0.685 Sum_probs=19.9
Q ss_pred CCcccccCCCCc----ccccccccccchhh
Q psy16825 10 RRLCLVCGDVAS----GFHYGVASCEACKA 35 (183)
Q Consensus 10 ~~~C~vC~~~~~----~~hyg~~~C~~C~~ 35 (183)
...|.-||..-- ..|||+.+|+.|+.
T Consensus 5 ~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~ 34 (111)
T 1d4u_A 5 YVICEECGKEFMDSYLMDHFDLPTCDDCRD 34 (111)
T ss_dssp CEECTTTCCEESCSSSTTTTSCCCCTTTCS
T ss_pred CCccccCCChhhHHHHHHhCCeeechhhcc
Confidence 346999997542 25999999999974
No 95
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=60.01 E-value=2.2 Score=28.11 Aligned_cols=54 Identities=22% Similarity=0.478 Sum_probs=33.0
Q ss_pred CCcccccCCCCccccccccccc-chhhhhhccccCCceeecCCCCCccc-----cccccccccchhhhH
Q psy16825 10 RRLCLVCGDVASGFHYGVASCE-ACKAFFKRTIQGNIEYTCPASNDCEI-----NKRRRKACQACRFQK 72 (183)
Q Consensus 10 ~~~C~vC~~~~~~~hyg~~~C~-~C~~FFrR~v~~~~~~~C~~~~~C~~-----~k~~r~~C~~CR~~K 72 (183)
.-.|.+|+.+-+.... .+.|. +|..+|... |.+-..=.. .....+.|..|+-.+
T Consensus 3 ~~~C~iC~~p~~~~~~-mi~Cdd~C~~WfH~~--------CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQD-AILCEASCQKWFHRE--------CTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSC-EEECTTTTCCEEEGG--------GTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCC-EEEecCCcccccccc--------cCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 4569999998543222 44565 999999776 643221111 122567898888654
No 96
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=58.08 E-value=4.7 Score=24.10 Aligned_cols=46 Identities=28% Similarity=0.598 Sum_probs=28.2
Q ss_pred CCcccccCCCCcccccccccccchhhhhhccccCCceeecCCCCCccccccccccccchh
Q psy16825 10 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACR 69 (183)
Q Consensus 10 ~~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~CR 69 (183)
...|.||++... ++.|.+|...|.-. |....-=.+ -...+.|..|.
T Consensus 12 ~~~C~vC~~~~~-----ll~Cd~C~~~~H~~--------Cl~P~l~~~-P~g~W~C~~C~ 57 (66)
T 2lri_C 12 GARCGVCGDGTD-----VLRCTHCAAAFHWR--------CHFPAGTSR-PGTGLRCRSCS 57 (66)
T ss_dssp TCCCTTTSCCTT-----CEECSSSCCEECHH--------HHCTTTCCC-CSSSCCCTTTT
T ss_pred CCCcCCCCCCCe-----EEECCCCCCceecc--------cCCCccCcC-CCCCEECcccc
Confidence 456999997643 77899998776544 532111111 12457888885
No 97
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.02 E-value=11 Score=23.97 Aligned_cols=53 Identities=23% Similarity=0.489 Sum_probs=33.9
Q ss_pred CcccccCCCCcccccccccccchhhhhhccccCCceeecCCCCCccccccccccccchhhhHHh
Q psy16825 11 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQKCL 74 (183)
Q Consensus 11 ~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~CR~~KCl 74 (183)
..|.||+..... --++.|.+|...|.-. |....-=.+- ...+.|..|+..+|.
T Consensus 17 ~~C~vC~~~~~~--~~ll~CD~C~~~~H~~--------Cl~Ppl~~~P-~g~W~C~~C~~~~~~ 69 (92)
T 2e6r_A 17 YICQVCSRGDED--DKLLFCDGCDDNYHIF--------CLLPPLPEIP-RGIWRCPKCILAECK 69 (92)
T ss_dssp CCCSSSCCSGGG--GGCEECTTTCCEECSS--------SSSSCCSSCC-SSCCCCHHHHHHHHS
T ss_pred CCCccCCCcCCC--CCEEEcCCCCchhccc--------cCCCCcccCC-CCCcCCccCcCcccc
Confidence 469999987531 2367899998776554 5432111122 246789999988864
No 98
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=57.70 E-value=6 Score=24.10 Aligned_cols=30 Identities=20% Similarity=0.489 Sum_probs=21.9
Q ss_pred CCcccccCCCCcc-c-----ccccccccchhhhhhcc
Q psy16825 10 RRLCLVCGDVASG-F-----HYGVASCEACKAFFKRT 40 (183)
Q Consensus 10 ~~~C~vC~~~~~~-~-----hyg~~~C~~C~~FFrR~ 40 (183)
...|..|+-..+- . --| ..|+||-.+|+..
T Consensus 8 ~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~ 43 (71)
T 2kae_A 8 SFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKY 43 (71)
T ss_dssp CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHH
T ss_pred CCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHh
Confidence 4679999986642 2 234 6799999999765
No 99
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=56.91 E-value=7.1 Score=22.56 Aligned_cols=48 Identities=21% Similarity=0.511 Sum_probs=30.6
Q ss_pred CcccccCCCCcccccccccccchhhhhhccccCCceeecCCCCCccccccccccccchhhhH
Q psy16825 11 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQK 72 (183)
Q Consensus 11 ~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~CR~~K 72 (183)
..|.||++.. ..+.|.+|...|.-. |....-=.+. ...+.|..|+.+.
T Consensus 6 ~~C~vC~~~g-----~ll~Cd~C~~~fH~~--------Cl~ppl~~~p-~g~W~C~~C~~~~ 53 (60)
T 2puy_A 6 DFCSVCRKSG-----QLLMCDTCSRVYHLD--------CLDPPLKTIP-KGMWICPRCQDQM 53 (60)
T ss_dssp SSCTTTCCCS-----SCEECSSSSCEECGG--------GSSSCCSSCC-CSCCCCHHHHHHH
T ss_pred CCCcCCCCCC-----cEEEcCCCCcCEECC--------cCCCCcCCCC-CCceEChhccChh
Confidence 4699999852 577899998877655 5332111121 2467899887554
No 100
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=53.90 E-value=5.7 Score=25.09 Aligned_cols=54 Identities=19% Similarity=0.496 Sum_probs=33.1
Q ss_pred CcccccCCCCcccccccccccchhhhhhccccCCceeecCCCCCcc---ccccccccccchhhhH
Q psy16825 11 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCE---INKRRRKACQACRFQK 72 (183)
Q Consensus 11 ~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~---~~k~~r~~C~~CR~~K 72 (183)
..|.||+...+.---..+.|.+|..-|.-. |...--=. ......+.|..|+..+
T Consensus 17 ~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~--------Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 17 LACVVCRQMTVASGNQLVECQECHNLYHQD--------CHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp CSCSSSCCCCCCTTCCEEECSSSCCEEETT--------TSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CcCCCCCCCCCCCCCceEECCCCCCeEcCc--------cCCCcccccccCCCCCCeeCccccchh
Confidence 369999987553334467899997666443 53221110 0124567999998766
No 101
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=53.48 E-value=9.4 Score=27.69 Aligned_cols=47 Identities=19% Similarity=0.564 Sum_probs=30.1
Q ss_pred CcccccCCCCcccccccccccchhhhhhccccCCceeecCCCCCccccccccccccchhhh
Q psy16825 11 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQ 71 (183)
Q Consensus 11 ~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~CR~~ 71 (183)
..|.||++.. ..+.|.+|..-|.-. |....-=.+ ..+.+.|..|+..
T Consensus 3 ~~C~~C~~~g-----~ll~Cd~C~~~~H~~--------Cl~p~l~~~-p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKPG-----DLVMCNQCEFCFHLD--------CHLPALQDV-PGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCCS-----SCCCCTTTCCBCCST--------TSTTCCSSC-CCTTCCTTTTSCS
T ss_pred CcCccCCCCC-----ceeECCCCCchhccc--------cCCCCcccC-CCCCCCCcCccCC
Confidence 4599999764 378899998777555 532211111 1345789888765
No 102
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=52.84 E-value=7.2 Score=27.14 Aligned_cols=32 Identities=22% Similarity=0.498 Sum_probs=25.4
Q ss_pred CCCcccccCCCCc-------ccc--cccccccchhhhhhcc
Q psy16825 9 PRRLCLVCGDVAS-------GFH--YGVASCEACKAFFKRT 40 (183)
Q Consensus 9 ~~~~C~vC~~~~~-------~~h--yg~~~C~~C~~FFrR~ 40 (183)
..-.|..||...+ -.| +++..|..|+.||...
T Consensus 13 ~~i~Ct~Cg~~~~~~q~~~~~~HPll~v~~C~~C~~~y~~~ 53 (142)
T 2lbm_A 13 GIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSD 53 (142)
T ss_dssp CCCBCTTTCSBSTTTCSSSEEEETTTTEEEEHHHHHHHHHS
T ss_pred CCCEecCCCCccccccccchhcCCCccccccHHHHHHHhcC
Confidence 3456999999874 246 9999999999988655
No 103
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=52.57 E-value=4.3 Score=32.96 Aligned_cols=32 Identities=22% Similarity=0.581 Sum_probs=27.1
Q ss_pred CCCcccccCCCCc---ccccccccccchhhhhhcc
Q psy16825 9 PRRLCLVCGDVAS---GFHYGVASCEACKAFFKRT 40 (183)
Q Consensus 9 ~~~~C~vC~~~~~---~~hyg~~~C~~C~~FFrR~ 40 (183)
....|.-||.+.. ...||++.|-.|++..|..
T Consensus 33 ~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l 67 (386)
T 3lju_X 33 GNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI 67 (386)
T ss_dssp GGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC
T ss_pred CCCcCccCCCCCCCeEEecccEEEhhhhchHhhCC
Confidence 3567999998765 4799999999999998876
No 104
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=51.71 E-value=6.4 Score=31.57 Aligned_cols=31 Identities=23% Similarity=0.574 Sum_probs=26.2
Q ss_pred CCcccccCCCCc---ccccccccccchhhhhhcc
Q psy16825 10 RRLCLVCGDVAS---GFHYGVASCEACKAFFKRT 40 (183)
Q Consensus 10 ~~~C~vC~~~~~---~~hyg~~~C~~C~~FFrR~ 40 (183)
...|.-||.+.. ...||++.|-.|++..|..
T Consensus 45 n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~l 78 (368)
T 3jue_A 45 NAQCCDCREPAPEWASINLGVTLCIQCSGIHRSL 78 (368)
T ss_dssp TTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHH
T ss_pred cCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhcc
Confidence 567999998764 4899999999999998764
No 105
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.57 E-value=6.7 Score=22.74 Aligned_cols=16 Identities=44% Similarity=1.240 Sum_probs=12.0
Q ss_pred CcccccCCCCcccccccccccc
Q psy16825 11 RLCLVCGDVASGFHYGVASCEA 32 (183)
Q Consensus 11 ~~C~vC~~~~~~~hyg~~~C~~ 32 (183)
..|+||| .||...|..
T Consensus 20 PvCvvCG------ryGeYICd~ 35 (60)
T 2yqp_A 20 PICVVCG------RYGEYICDK 35 (60)
T ss_dssp CCCSSSS------SCCSEECSS
T ss_pred ceEEEec------CccceeecC
Confidence 4599999 588777753
No 106
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=51.51 E-value=11 Score=24.06 Aligned_cols=12 Identities=33% Similarity=0.947 Sum_probs=9.3
Q ss_pred CCCcccccCCCC
Q psy16825 9 PRRLCLVCGDVA 20 (183)
Q Consensus 9 ~~~~C~vC~~~~ 20 (183)
..++|+|||+..
T Consensus 15 ~~qiCqiCGD~V 26 (93)
T 1weo_A 15 DGQFCEICGDQI 26 (93)
T ss_dssp SSCBCSSSCCBC
T ss_pred CCCccccccCcc
Confidence 346899999973
No 107
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=50.41 E-value=10 Score=27.24 Aligned_cols=48 Identities=23% Similarity=0.544 Sum_probs=29.2
Q ss_pred CcccccCCCCcccccccccccchhhhhhccccCCceeecCCCCCccccccccccccchhhhH
Q psy16825 11 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQK 72 (183)
Q Consensus 11 ~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~CR~~K 72 (183)
..|.||++... .+.|.+|..-|.-. |....-=.+ ..+.+.|..|+-.+
T Consensus 5 ~~C~~C~~~g~-----ll~Cd~C~~~~H~~--------C~~p~l~~~-p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 5 DWCAVCQNGGE-----LLCCEKCPKVFHLS--------CHVPTLTNF-PSGEWICTFCRDLS 52 (184)
T ss_dssp SSCTTTCCCSS-----CEECSSSSCEECTT--------TSSSCCSSC-CSSCCCCTTTSCSS
T ss_pred CccccCCCCCe-----eeecCCCCcccCcc--------ccCCCCCCC-CCCCEECccccCcc
Confidence 56999997643 78899997666443 532111111 12457888887544
No 108
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.13 E-value=11 Score=21.85 Aligned_cols=26 Identities=23% Similarity=0.694 Sum_probs=15.1
Q ss_pred CCCCCCCCcccccCCCCcccccccccccchhh
Q psy16825 4 KEEELPRRLCLVCGDVASGFHYGVASCEACKA 35 (183)
Q Consensus 4 ~~~~~~~~~C~vC~~~~~~~hyg~~~C~~C~~ 35 (183)
++-......|.||+. . ..| .|-.|.+
T Consensus 6 ~~~~~~~~~C~vC~~-~--~kY---~CPrC~~ 31 (56)
T 2yqq_A 6 SGLKCSTVVCVICLE-K--PKY---RCPACRV 31 (56)
T ss_dssp CCCCCCCCCCTTTCS-C--CSE---ECTTTCC
T ss_pred cccCCCCCccCcCcC-C--Cee---eCCCCCC
Confidence 333334457999998 3 334 5666653
No 109
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=48.61 E-value=4.5 Score=24.45 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=17.2
Q ss_pred CCCCCCCcccccCCCCc---ccccccccccchh
Q psy16825 5 EEELPRRLCLVCGDVAS---GFHYGVASCEACK 34 (183)
Q Consensus 5 ~~~~~~~~C~vC~~~~~---~~hyg~~~C~~C~ 34 (183)
++..+...|.+||.+.. ...|-.++...|+
T Consensus 4 m~~~~~~~CP~Cgkp~~W~~~~~~rPFCSeRCr 36 (68)
T 1lv3_A 4 MSETITVNCPTCGKTVVWGEISPFRPFCSKRCQ 36 (68)
T ss_dssp CCCCCEEECTTTCCEEECSSSSSCCSSSSHHHH
T ss_pred CCCCCcCcCCCCCCcccccccCCCCcccCHHHH
Confidence 33445567999997753 2444444555554
No 110
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=47.17 E-value=21 Score=22.22 Aligned_cols=52 Identities=17% Similarity=0.356 Sum_probs=33.8
Q ss_pred CCCCcccccCCCCcccccc-------cccccchhhhhhccccCCceeecCCCCCccccc
Q psy16825 8 LPRRLCLVCGDVASGFHYG-------VASCEACKAFFKRTIQGNIEYTCPASNDCEINK 59 (183)
Q Consensus 8 ~~~~~C~vC~~~~~~~hyg-------~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k 59 (183)
...-.|.+|..+--..||= ---|-.|.--+-+.-.......|+.+..|....
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG~kCpL~g 71 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKCPLVG 71 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSSCCBCSS
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCCCccccCC
Confidence 3345699999988777772 123667763333333344566799999998864
No 111
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=47.05 E-value=9 Score=28.10 Aligned_cols=48 Identities=25% Similarity=0.533 Sum_probs=28.4
Q ss_pred CCcccccCCCCcccccccccccchhhhhhccccCCceeecCCCCCccccccccccccchhhh
Q psy16825 10 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQ 71 (183)
Q Consensus 10 ~~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~CR~~ 71 (183)
...|.||++.. .++.|.+|..-|.-. |....-=.+ -.+.+.|..|+-.
T Consensus 7 ~~~C~~C~~~g-----~ll~Cd~C~~~~H~~--------Cl~p~l~~~-p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 7 EDWCAVCQNGG-----DLLCCEKCPKVFHLT--------CHVPTLLSF-PSGDWICTFCRDI 54 (207)
T ss_dssp CSSBTTTCCCE-----EEEECSSSSCEECTT--------TSSSCCSSC-CSSCCCCTTTSCS
T ss_pred CCCCCCCCCCC-----ceEEcCCCCCccCCc--------cCCCCCCCC-CCCCEEeCceeCc
Confidence 45699999764 378899997665443 532111011 1235677777654
No 112
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=46.66 E-value=6 Score=22.43 Aligned_cols=21 Identities=33% Similarity=0.944 Sum_probs=16.3
Q ss_pred CcccccCCCCcccccccccccchh
Q psy16825 11 RLCLVCGDVASGFHYGVASCEACK 34 (183)
Q Consensus 11 ~~C~vC~~~~~~~hyg~~~C~~C~ 34 (183)
.+|..||.. .+.|++.|+-|-
T Consensus 15 ~iCpkC~a~---~~~gaw~CrKCG 35 (51)
T 3j21_g 15 YVCLRCGAT---NPWGAKKCRKCG 35 (51)
T ss_dssp EECTTTCCE---ECTTCSSCSSSS
T ss_pred ccCCCCCCc---CCCCceecCCCC
Confidence 358888876 778888888774
No 113
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=45.50 E-value=9.4 Score=29.40 Aligned_cols=32 Identities=22% Similarity=0.565 Sum_probs=26.6
Q ss_pred CCCcccccCCCCc---ccccccccccchhhhhhcc
Q psy16825 9 PRRLCLVCGDVAS---GFHYGVASCEACKAFFKRT 40 (183)
Q Consensus 9 ~~~~C~vC~~~~~---~~hyg~~~C~~C~~FFrR~ 40 (183)
....|.-||.+.. ...||++.|-.|++..|..
T Consensus 41 ~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~l 75 (301)
T 2b0o_E 41 GNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHREL 75 (301)
T ss_dssp TTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHH
T ss_pred CCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhh
Confidence 3567999998764 4799999999999998764
No 114
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=43.77 E-value=15 Score=29.97 Aligned_cols=32 Identities=22% Similarity=0.596 Sum_probs=25.6
Q ss_pred CcccccCCCCc-c--cccccccccchhhhhhcccc
Q psy16825 11 RLCLVCGDVAS-G--FHYGVASCEACKAFFKRTIQ 42 (183)
Q Consensus 11 ~~C~vC~~~~~-~--~hyg~~~C~~C~~FFrR~v~ 42 (183)
..|..||.... - .+|.|.-|..|+.||....-
T Consensus 51 ~~C~~CG~~~~~~~HPl~~v~lC~~Ck~~y~~~~f 85 (386)
T 2pv0_B 51 DICICCGSLQVHTQHPLFEGGICAPCKDKFLDALF 85 (386)
T ss_dssp GSBTTTCCSCCCSBCSSBSSBCCHHHHHHHHTTTT
T ss_pred ceeCCCCCcCccccCCCcCcchhhHHHHHHhccCc
Confidence 36999998753 2 45899999999999987654
No 115
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=43.23 E-value=11 Score=23.94 Aligned_cols=47 Identities=19% Similarity=0.564 Sum_probs=29.7
Q ss_pred CcccccCCCCcccccccccccchhhhhhccccCCceeecCCCCCccccccccccccchhhh
Q psy16825 11 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQ 71 (183)
Q Consensus 11 ~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~CR~~ 71 (183)
..|.||++.. ..+.|.+|..-|.-. |-...-=.+ -.+.+.|..|+..
T Consensus 26 ~~C~vC~~~g-----~LL~CD~C~~~fH~~--------Cl~PpL~~~-P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 26 TICRVCQKPG-----DLVMCNQCEFCFHLD--------CHLPALQDV-PGEEWSCSLCHVL 72 (88)
T ss_dssp SCCSSSCSSS-----CCEECTTSSCEECTT--------SSSTTCCCC-CSSSCCCCSCCCC
T ss_pred CcCcCcCCCC-----CEEECCCCCCceecc--------cCCCCCCCC-cCCCcCCccccCC
Confidence 4699999864 478899997766443 432211112 1246789999754
No 116
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=43.08 E-value=11 Score=22.04 Aligned_cols=18 Identities=28% Similarity=0.521 Sum_probs=15.0
Q ss_pred Ccccccccccccc--hhhhh
Q psy16825 20 ASGFHYGVASCEA--CKAFF 37 (183)
Q Consensus 20 ~~~~hyg~~~C~~--C~~FF 37 (183)
++|..|+.+-|+. |+++.
T Consensus 2 ~~~~~~~pvRC~r~~Crayl 21 (59)
T 2yrc_A 2 SSGSSGEPVLCSRTTCRAVL 21 (59)
T ss_dssp CCSSCCCCCBCSCTTTCCBC
T ss_pred CccCCCCCcccCCCCCCeEE
Confidence 5688899999998 98774
No 117
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=40.14 E-value=3.4 Score=26.93 Aligned_cols=26 Identities=31% Similarity=0.694 Sum_probs=20.2
Q ss_pred cccccCCCCc------ccccccc--cccchhhhh
Q psy16825 12 LCLVCGDVAS------GFHYGVA--SCEACKAFF 37 (183)
Q Consensus 12 ~C~vC~~~~~------~~hyg~~--~C~~C~~FF 37 (183)
.|.+|+.++. .||-|++ .|.+|+..+
T Consensus 15 TC~~C~tRs~k~iSk~aY~~GvViv~C~gC~n~H 48 (100)
T 2e2z_A 15 TCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRH 48 (100)
T ss_dssp EETTTTEEEEEEEEHHHHHTSEEEEECTTTCCEE
T ss_pred EccCCCCcchhhcCHHHhhCCEEEEEcCCCccce
Confidence 5999998764 3888886 799998654
No 118
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=39.27 E-value=7 Score=23.66 Aligned_cols=28 Identities=18% Similarity=0.652 Sum_probs=20.4
Q ss_pred CcccccCCCCcccccccccccchhhhhhcc
Q psy16825 11 RLCLVCGDVASGFHYGVASCEACKAFFKRT 40 (183)
Q Consensus 11 ~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~ 40 (183)
..|.||+.+..+- ..+.|.+|..+|.-.
T Consensus 19 ~~C~~C~~~~~~~--~mi~CD~C~~wfH~~ 46 (75)
T 2k16_A 19 WICPGCNKPDDGS--PMIGCDDCDDWYHWP 46 (75)
T ss_dssp ECBTTTTBCCSSC--CEEECSSSSSEEEHH
T ss_pred cCCCCCCCCCCCC--CEEEcCCCCcccccc
Confidence 3599999886531 257899998887554
No 119
>3j20_P 30S ribosomal protein S14P type Z; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=39.11 E-value=14 Score=21.29 Aligned_cols=23 Identities=30% Similarity=0.728 Sum_probs=18.1
Q ss_pred CcccccCCCCc-ccccccccccch
Q psy16825 11 RLCLVCGDVAS-GFHYGVASCEAC 33 (183)
Q Consensus 11 ~~C~vC~~~~~-~~hyg~~~C~~C 33 (183)
..|.|||.+.. --.||...|+-|
T Consensus 19 ~rC~vcGr~~g~iRkfGL~~cR~c 42 (56)
T 3j20_P 19 RRCIRCGQYGPIIRIQGLMLCRHC 42 (56)
T ss_dssp CCCSSSCCSSSCCCTTTCCCCHHH
T ss_pred eEeecCCCCcccccccCChHHHHH
Confidence 56999999863 377888888877
No 120
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=36.04 E-value=15 Score=27.87 Aligned_cols=32 Identities=19% Similarity=0.588 Sum_probs=26.8
Q ss_pred CCCcccccCCCCc---ccccccccccchhhhhhcc
Q psy16825 9 PRRLCLVCGDVAS---GFHYGVASCEACKAFFKRT 40 (183)
Q Consensus 9 ~~~~C~vC~~~~~---~~hyg~~~C~~C~~FFrR~ 40 (183)
....|.-||.+.. ...||+..|-.|++..|..
T Consensus 16 ~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~l 50 (278)
T 1dcq_A 16 GNDVCCDCGAPDPTWLSTNLGILTCIECSGIHREL 50 (278)
T ss_dssp TTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHH
T ss_pred CCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhc
Confidence 4567999998764 4799999999999998875
No 121
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=35.90 E-value=8.8 Score=27.83 Aligned_cols=31 Identities=13% Similarity=0.460 Sum_probs=23.1
Q ss_pred CCcccccCCCCccc--ccccccccchhhhhhcc
Q psy16825 10 RRLCLVCGDVASGF--HYGVASCEACKAFFKRT 40 (183)
Q Consensus 10 ~~~C~vC~~~~~~~--hyg~~~C~~C~~FFrR~ 40 (183)
...|.||+.+-..- +-.++-|..|..+|.-.
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~ 34 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSK 34 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGG
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchh
Confidence 34699999876543 33577899999998665
No 122
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=35.11 E-value=26 Score=23.24 Aligned_cols=33 Identities=21% Similarity=0.447 Sum_probs=24.2
Q ss_pred CCcccccCCCCcc----cccccccccchhhhhhcccc
Q psy16825 10 RRLCLVCGDVASG----FHYGVASCEACKAFFKRTIQ 42 (183)
Q Consensus 10 ~~~C~vC~~~~~~----~hyg~~~C~~C~~FFrR~v~ 42 (183)
...|..|+-..+- -..|...|++|-.||+....
T Consensus 59 ~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~~ 95 (115)
T 4hc9_A 59 GTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 95 (115)
T ss_dssp TCCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSS
T ss_pred cccCCCcCCCCcceeEECCCCCCcchHHHHHHHHhCC
Confidence 4579999887642 34566789999999987643
No 123
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=34.45 E-value=19 Score=21.88 Aligned_cols=24 Identities=29% Similarity=0.631 Sum_probs=18.8
Q ss_pred CcccccCCCCcc-cccccccccchh
Q psy16825 11 RLCLVCGDVASG-FHYGVASCEACK 34 (183)
Q Consensus 11 ~~C~vC~~~~~~-~hyg~~~C~~C~ 34 (183)
-.|+.||..+-. .-.|++.|..|.
T Consensus 27 y~C~fCgk~~vkR~a~GIW~C~~C~ 51 (72)
T 3jyw_9 27 YDCSFCGKKTVKRGAAGIWTCSCCK 51 (72)
T ss_dssp BCCSSCCSSCBSBCSSSCBCCSSSC
T ss_pred ccCCCCCCceeEecCCCeEECCCCC
Confidence 469999987743 568899999995
No 124
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.87 E-value=14 Score=23.61 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=19.9
Q ss_pred CCCCCCCCCCcccccCCCCccccccccc
Q psy16825 2 GIKEEELPRRLCLVCGDVASGFHYGVAS 29 (183)
Q Consensus 2 ~~~~~~~~~~~C~vC~~~~~~~hyg~~~ 29 (183)
|++....+.+.+.|| +......|||.+
T Consensus 1 ~~~~~~~~~kpfkV~-~~~Rs~k~GV~A 27 (91)
T 2eel_A 1 GSSGSSGPARPFRVS-NHDRSSRRGVMA 27 (91)
T ss_dssp CCSCCSSCCEEEEEE-CTTSCCCEEEEE
T ss_pred CCcccCCCCCCEEEe-cCCCCeEEeEEc
Confidence 456667778889999 556678888763
No 125
>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n
Probab=33.73 E-value=16 Score=21.11 Aligned_cols=23 Identities=39% Similarity=1.011 Sum_probs=18.2
Q ss_pred CcccccCCCCc-ccccccccccch
Q psy16825 11 RLCLVCGDVAS-GFHYGVASCEAC 33 (183)
Q Consensus 11 ~~C~vC~~~~~-~~hyg~~~C~~C 33 (183)
..|.|||.+.. --.||...|+-|
T Consensus 19 ~rC~vcGr~~g~iRkfGL~~cR~c 42 (56)
T 3iz6_N 19 RVCRVCGNSHGLIRKYGLMCCRQC 42 (56)
T ss_dssp CCCSSCCCSCCCTTTTSCTTHHHH
T ss_pred ceeecCCCCcccccccCCcHHHHH
Confidence 56999999864 367898888877
No 126
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=33.17 E-value=41 Score=21.44 Aligned_cols=46 Identities=20% Similarity=0.515 Sum_probs=28.0
Q ss_pred cccccCCCCcccccccccccchhhhhhccccCCceeecCCCCCccccccccccccchhh
Q psy16825 12 LCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRF 70 (183)
Q Consensus 12 ~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~CR~ 70 (183)
.| |||....+- -++.|..|..+|--. |.+-..=.+. ..+.|..|+-
T Consensus 30 rC-iC~~~~~~~--~mi~Cd~C~~w~H~~--------C~~~~~~~~p--~~w~C~~C~~ 75 (98)
T 2lv9_A 30 RC-ICGFTHDDG--YMICCDKCSVWQHID--------CMGIDRQHIP--DTYLCERCQP 75 (98)
T ss_dssp CC-TTSCCSCSS--CEEEBTTTCBEEETT--------TTTCCTTSCC--SSBCCTTTSS
T ss_pred Ee-ECCCccCCC--cEEEcCCCCCcCcCc--------CCCCCccCCC--CCEECCCCcC
Confidence 48 898876431 256899999887554 6432211121 2478999963
No 127
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=32.98 E-value=38 Score=19.38 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=16.4
Q ss_pred CCcccccCCCCc--ccccccccccchh
Q psy16825 10 RRLCLVCGDVAS--GFHYGVASCEACK 34 (183)
Q Consensus 10 ~~~C~vC~~~~~--~~hyg~~~C~~C~ 34 (183)
...|..||...- .+.=|...|..|-
T Consensus 11 ~~~Cp~C~~~~lv~D~~~ge~vC~~CG 37 (58)
T 1dl6_A 11 RVTCPNHPDAILVEDYRAGDMICPECG 37 (58)
T ss_dssp CCSBTTBSSSCCEECSSSCCEECTTTC
T ss_pred cccCcCCCCCceeEeCCCCeEEeCCCC
Confidence 346999987443 2344777888885
No 128
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=32.92 E-value=17 Score=30.03 Aligned_cols=32 Identities=22% Similarity=0.565 Sum_probs=26.8
Q ss_pred CCCcccccCCCCc---ccccccccccchhhhhhcc
Q psy16825 9 PRRLCLVCGDVAS---GFHYGVASCEACKAFFKRT 40 (183)
Q Consensus 9 ~~~~C~vC~~~~~---~~hyg~~~C~~C~~FFrR~ 40 (183)
....|.-||.+.. ...+|++.|-.|.+..|..
T Consensus 22 ~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~l 56 (497)
T 3lvq_E 22 GNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHREL 56 (497)
T ss_dssp TTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHH
T ss_pred CCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhh
Confidence 3567999998664 4789999999999998874
No 129
>1x5v_A PCFK1; inhibitory cystine knot, toxin; HET: HSL; NMR {Psalmopoeus cambridgei}
Probab=31.97 E-value=6.7 Score=19.53 Aligned_cols=23 Identities=30% Similarity=0.925 Sum_probs=14.8
Q ss_pred CCCccccccccccccc--hhhhHHh
Q psy16825 52 SNDCEINKRRRKACQA--CRFQKCL 74 (183)
Q Consensus 52 ~~~C~~~k~~r~~C~~--CR~~KCl 74 (183)
+.+|......+.-|+. |||-+|+
T Consensus 6 hd~c~~~p~~~~cc~glqcryg~cl 30 (34)
T 1x5v_A 6 HDNCVYVPAQNPCCRGLQCRYGKCL 30 (34)
T ss_dssp TCEECSCGGGCCBCTTEEEETEEEE
T ss_pred cCCCCCCCCCCccceeeeeccCcEE
Confidence 4456665555655653 8888886
No 130
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=31.10 E-value=5.8 Score=28.19 Aligned_cols=53 Identities=15% Similarity=0.481 Sum_probs=32.4
Q ss_pred CCcccccCCCCcccccc-cccccchhhhhhccccCCceeecCCCCCccccccccccccchhhhHH
Q psy16825 10 RRLCLVCGDVASGFHYG-VASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQKC 73 (183)
Q Consensus 10 ~~~C~vC~~~~~~~hyg-~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~CR~~KC 73 (183)
...| +|+.+... +| ++.|..|..+|.-. |.+-..=..+....+.|..|+-.+-
T Consensus 8 ~~~C-~C~~~~~~--~~~mi~Cd~C~~WfH~~--------Cv~~~~~~~~~~~~~~C~~C~~~~~ 61 (174)
T 2ri7_A 8 KLYC-ICKTPEDE--SKFYIGCDRCQNWYHGR--------CVGILQSEAELIDEYVCPQCQSTED 61 (174)
T ss_dssp CEET-TTTEECCT--TSCEEECTTTCCEEEHH--------HHTCCHHHHTTCSSCCCHHHHHHHH
T ss_pred CcEe-eCCCCCCC--CCCEeECCCCCchhChh--------hcCCchhhccCccCeecCCCcchhc
Confidence 4469 99987431 22 57899999887655 6332111112234678999987763
No 131
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=31.04 E-value=19 Score=25.42 Aligned_cols=33 Identities=21% Similarity=0.522 Sum_probs=25.2
Q ss_pred CCcccccCCCCc-c--cccccccccchhhhhhcccc
Q psy16825 10 RRLCLVCGDVAS-G--FHYGVASCEACKAFFKRTIQ 42 (183)
Q Consensus 10 ~~~C~vC~~~~~-~--~hyg~~~C~~C~~FFrR~v~ 42 (183)
...|..||.... - ..+.|.-|..|+.||....-
T Consensus 36 e~~Ct~CG~~~~~~~HPlf~v~lC~~Ck~~y~e~~f 71 (159)
T 3a1b_A 36 EDICISCGSLNVTLEHPLFVGGMCQNCKNCFLECAY 71 (159)
T ss_dssp GGSBTTTCCSCCCEECSSBSSEECHHHHHHHHHHTT
T ss_pred cCcccCCCCcCccccCCCccchhhHHHHHHHhhccc
Confidence 356999998543 2 45899999999999977644
No 132
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=30.64 E-value=17 Score=24.84 Aligned_cols=30 Identities=20% Similarity=0.500 Sum_probs=24.3
Q ss_pred CcccccCCCCc-------c--cccccccccchhhhhhcc
Q psy16825 11 RLCLVCGDVAS-------G--FHYGVASCEACKAFFKRT 40 (183)
Q Consensus 11 ~~C~vC~~~~~-------~--~hyg~~~C~~C~~FFrR~ 40 (183)
-.|..||...+ - ..+.|..|..|+.||...
T Consensus 9 ~~Ct~Cg~~~~~~~~~~~~~HPll~v~~C~~C~~~y~~~ 47 (129)
T 3ql9_A 9 VSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSD 47 (129)
T ss_dssp CBCTTTCCBCCCCBTTTEEECTTTCCEEEHHHHHHHHHS
T ss_pred eEeccCCCCCcccCCCccccCCCcCceeCHhHHhhhhcc
Confidence 46999999884 1 458899999999998665
No 133
>2fqh_A Hypothetical protein TA0938; structural genomics, Zn-binding,, ontario centre for structural proteomics, OCSP, unknown function; NMR {Thermoplasma acidophilum}
Probab=30.37 E-value=23 Score=22.79 Aligned_cols=31 Identities=26% Similarity=0.668 Sum_probs=24.0
Q ss_pred cccccCCCCcccccccc------cccchhhhhhcccc
Q psy16825 12 LCLVCGDVASGFHYGVA------SCEACKAFFKRTIQ 42 (183)
Q Consensus 12 ~C~vC~~~~~~~hyg~~------~C~~C~~FFrR~v~ 42 (183)
-|..||.+-.++|=-++ +|.-|+.=|++.+.
T Consensus 19 GCALCG~tWg~yY~ev~GekLfFCCd~ca~EF~nmi~ 55 (109)
T 2fqh_A 19 GCALCGATWGDYHADFLGEDLFFCCDICAAEFMNMMD 55 (109)
T ss_dssp SCSSCCCSCCCSSCBCTTCCBSSSCCSSSSCTTSCTH
T ss_pred ceeeeCCchHHHHHhccCCeEEEEcHHHHHHHHHHHH
Confidence 49999988877766553 78888888887765
No 134
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=29.70 E-value=26 Score=26.23 Aligned_cols=48 Identities=21% Similarity=0.507 Sum_probs=25.2
Q ss_pred cccccCCCCcccccccccccchhhhhhccccCCceeecCCCCCccccccccccccchh
Q psy16825 12 LCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACR 69 (183)
Q Consensus 12 ~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~CR 69 (183)
.|.|||...++ -..+.|.+|...|.-. |....-=.+-....+.|..|+
T Consensus 176 ~C~vC~~~~~~--~~lL~CD~C~~~yH~~--------CL~PPL~~vP~G~~W~Cp~C~ 223 (226)
T 3ask_A 176 ACHLCGGRQDP--DKQLMCDECDMAFHIY--------CLDPPLSSVPSEDEWYCPECR 223 (226)
T ss_dssp SCSSSCCCCC----CCEECSSSCCEECSC--------C--CCCCSCCSSSCCCCGGGC
T ss_pred CCcCCCCCCCC--CCeEEcCCCCcceeCc--------cCCCCcccCCCCCCCCCcCCc
Confidence 48888876543 2456788887666443 533111112222256888885
No 135
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=29.68 E-value=19 Score=19.80 Aligned_cols=27 Identities=22% Similarity=0.528 Sum_probs=18.2
Q ss_pred cccccCCCCcccccccccccchhhhhhcc
Q psy16825 12 LCLVCGDVASGFHYGVASCEACKAFFKRT 40 (183)
Q Consensus 12 ~C~vC~~~~~~~hyg~~~C~~C~~FFrR~ 40 (183)
.|.||++...+ --++.|.+|...|.-.
T Consensus 2 ~C~vC~~~~~~--~~ll~Cd~C~~~~H~~ 28 (51)
T 1f62_A 2 RCKVCRKKGED--DKLILCDECNKAFHLF 28 (51)
T ss_dssp CCTTTCCSSCC--SCCEECTTTCCEECHH
T ss_pred CCCCCCCCCCC--CCEEECCCCChhhCcc
Confidence 48999987532 1366799997666444
No 136
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=29.46 E-value=20 Score=22.94 Aligned_cols=24 Identities=29% Similarity=0.631 Sum_probs=18.6
Q ss_pred CcccccCCCCcc-cccccccccchh
Q psy16825 11 RLCLVCGDVASG-FHYGVASCEACK 34 (183)
Q Consensus 11 ~~C~vC~~~~~~-~hyg~~~C~~C~ 34 (183)
-.|+.||..+-. .-.|++.|..|.
T Consensus 37 y~CpfCgk~~vkR~a~GIW~C~~C~ 61 (92)
T 3izc_m 37 YDCSFCGKKTVKRGAAGIWTCSCCK 61 (92)
T ss_dssp CCCSSSCSSCCEEEETTEEECTTTC
T ss_pred CcCCCCCCceeeecccceEEcCCCC
Confidence 469999987643 568899999994
No 137
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=29.41 E-value=23 Score=20.18 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=18.3
Q ss_pred CCcccccCCCCc-ccccccccccchh
Q psy16825 10 RRLCLVCGDVAS-GFHYGVASCEACK 34 (183)
Q Consensus 10 ~~~C~vC~~~~~-~~hyg~~~C~~C~ 34 (183)
...|+-||.... ..|++.+.|..|-
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~kCg 43 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCGRCG 43 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECTTTC
T ss_pred cccCcCCCCceeEeccCCEEECCCCC
Confidence 467999997542 4677888888874
No 138
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=29.13 E-value=26 Score=20.22 Aligned_cols=48 Identities=17% Similarity=0.514 Sum_probs=28.3
Q ss_pred CCcccccCCCCcccccccccccchhhhhhccccCCceeecCCCCCccccccccccccchhhh
Q psy16825 10 RRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQ 71 (183)
Q Consensus 10 ~~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~CR~~ 71 (183)
...|.||++.. .++.|.+|...|.-. |....-=.+ -...+.|..|+.+
T Consensus 11 ~~~C~vC~~~g-----~ll~CD~C~~~fH~~--------Cl~p~l~~~-p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 11 QDYCEVCQQGG-----EIILCDTCPRAYHMV--------CLDPDMEKA-PEGKWSCPHCEKE 58 (61)
T ss_dssp CSSCTTTSCCS-----SEEECSSSSCEEEHH--------HHCTTCCSC-CCSSCCCTTGGGG
T ss_pred CCCCccCCCCC-----cEEECCCCChhhhhh--------ccCCCCCCC-CCCceECcccccc
Confidence 45799999742 567899997666443 422110011 1246788888643
No 139
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=28.76 E-value=17 Score=20.00 Aligned_cols=24 Identities=25% Similarity=0.758 Sum_probs=12.9
Q ss_pred CCCCCCcccccCCCCcccccccccccchhh
Q psy16825 6 EELPRRLCLVCGDVASGFHYGVASCEACKA 35 (183)
Q Consensus 6 ~~~~~~~C~vC~~~~~~~hyg~~~C~~C~~ 35 (183)
.+.....|..||.+ +...|.+|+.
T Consensus 5 ~~~~~~~C~~C~~~------~~~~C~~C~~ 28 (52)
T 2jw6_A 5 AERKEQSCVNCGRE------AMSECTGCHK 28 (52)
T ss_dssp ------CCSSSSSS------CSEECTTTCS
T ss_pred ccccCCcCCCCCCC------CcCcCCCCCC
Confidence 34445679999875 3456777764
No 140
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}
Probab=28.57 E-value=23 Score=20.36 Aligned_cols=23 Identities=26% Similarity=0.687 Sum_probs=14.7
Q ss_pred CCCCCcccccCCCCcccccccccccchhh
Q psy16825 7 ELPRRLCLVCGDVASGFHYGVASCEACKA 35 (183)
Q Consensus 7 ~~~~~~C~vC~~~~~~~hyg~~~C~~C~~ 35 (183)
......|.+||..+ ...|.+|+.
T Consensus 10 ~~~~~~C~~C~~~~------~~~Cs~C~~ 32 (60)
T 2od1_A 10 SDSSESCWNCGRKA------SETCSGCNT 32 (60)
T ss_dssp -CCSSCCTTTSSCC------CEECTTTSC
T ss_pred CCCCCccccCCCcc------cccCCCCCC
Confidence 33346799999853 356777763
No 141
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=27.80 E-value=21 Score=22.80 Aligned_cols=24 Identities=29% Similarity=0.724 Sum_probs=18.4
Q ss_pred CcccccCCCCcc-cccccccccchh
Q psy16825 11 RLCLVCGDVASG-FHYGVASCEACK 34 (183)
Q Consensus 11 ~~C~vC~~~~~~-~hyg~~~C~~C~ 34 (183)
-.|+.||..+-. .-.|++.|..|.
T Consensus 37 y~CpfCgk~~vkR~a~GIW~C~~Cg 61 (92)
T 3iz5_m 37 YFCEFCGKFAVKRKAVGIWGCKDCG 61 (92)
T ss_dssp BCCTTTCSSCBEEEETTEEECSSSC
T ss_pred ccCcccCCCeeEecCcceEEcCCCC
Confidence 369999988643 567888999984
No 142
>3u5c_d S36, YS29, 40S ribosomal protein S29-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_N 3o30_S 3o2z_S 3u5g_d 3jyv_N* 1s1h_N
Probab=27.35 E-value=24 Score=20.30 Aligned_cols=23 Identities=35% Similarity=0.832 Sum_probs=16.6
Q ss_pred CcccccCCCCc-ccccccccccch
Q psy16825 11 RLCLVCGDVAS-GFHYGVASCEAC 33 (183)
Q Consensus 11 ~~C~vC~~~~~-~~hyg~~~C~~C 33 (183)
..|.|||.+.. --.||...|+-|
T Consensus 19 ~rC~vcGr~~g~iRkfGl~lcR~c 42 (56)
T 3u5c_d 19 RQCRVCSSHTGLIRKYGLNICRQC 42 (56)
T ss_dssp CCCTTTCCCSSEECGGGCCEEHHH
T ss_pred ceeecCCCCcccccccCcchhHHH
Confidence 45999998763 267887777766
No 143
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=26.96 E-value=41 Score=20.01 Aligned_cols=27 Identities=22% Similarity=0.518 Sum_probs=17.5
Q ss_pred cccccCCCCcccccccccccchhhhhhcc
Q psy16825 12 LCLVCGDVASGFHYGVASCEACKAFFKRT 40 (183)
Q Consensus 12 ~C~vC~~~~~~~hyg~~~C~~C~~FFrR~ 40 (183)
.|.|||....+- .++.|.+|...|.-.
T Consensus 20 ~C~~C~~~~~~~--~ll~CD~C~~~yH~~ 46 (70)
T 3asl_A 20 ACHLCGGRQDPD--KQLMCDECDMAFHIY 46 (70)
T ss_dssp SBTTTCCCSCGG--GEEECTTTCCEEEGG
T ss_pred CCcCCCCcCCCC--CEEEcCCCCCceecc
Confidence 477888765432 456799997666433
No 144
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=26.74 E-value=24 Score=21.51 Aligned_cols=52 Identities=17% Similarity=0.412 Sum_probs=28.8
Q ss_pred CcccccCCCCcccccccccccchhhhhhccccCCceeecCCCCCccccccccccccchhhhH
Q psy16825 11 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQK 72 (183)
Q Consensus 11 ~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~CR~~K 72 (183)
..| ||+.+..... -++.|..|..+|.-. |.+-..=.........|..|+-.+
T Consensus 13 ~~C-~C~~~~d~~~-~MIqCd~C~~WfH~~--------Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 13 VYC-LCRQPYNVNH-FMIECGLCQDWFHGS--------CVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCS-TTSCSCCSSS-CEEEBTTTCCEEEHH--------HHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cEE-EcCCccCCCC-ceEEcCCCCCcEEee--------ecCcccccccCCCeEECCCccccc
Confidence 458 8998874211 245799999887554 532111111112356777776543
No 145
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=25.51 E-value=22 Score=21.63 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=17.7
Q ss_pred CCcccccCCCCc-ccccccccccchh
Q psy16825 10 RRLCLVCGDVAS-GFHYGVASCEACK 34 (183)
Q Consensus 10 ~~~C~vC~~~~~-~~hyg~~~C~~C~ 34 (183)
.-.|..||..+- -.--|++.|..|.
T Consensus 27 ky~C~fCgk~~vkR~a~GIW~C~~C~ 52 (73)
T 1ffk_W 27 KYKCPVCGFPKLKRASTSIWVCGHCG 52 (73)
T ss_pred CccCCCCCCceeEEEEeEEEECCCCC
Confidence 346888887553 3567888888885
No 146
>1g2y_A Hepatocyte nuclear factor 1-alpha; dimerization domain, four-helix bundle, transcription factor, selenomethionine; 1.00A {Synthetic} SCOP: a.34.2.1 PDB: 1g39_A 1f93_E 1g2z_A 1jb6_A 2gyp_A
Probab=25.29 E-value=63 Score=16.16 Aligned_cols=16 Identities=25% Similarity=0.482 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHH
Q psy16825 162 SSLKKFRNSILSSLGD 177 (183)
Q Consensus 162 ~~v~~~~~~~~~~L~~ 177 (183)
+....+|..++++|.+
T Consensus 3 skLs~LQ~eLL~aLL~ 18 (32)
T 1g2y_A 3 SKLSQLQTEMLAALLE 18 (32)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH
Confidence 3456788999998865
No 147
>2xzm_N RPS29E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_N
Probab=25.13 E-value=35 Score=19.52 Aligned_cols=23 Identities=30% Similarity=0.793 Sum_probs=17.9
Q ss_pred CcccccCCCCc-ccccccccccch
Q psy16825 11 RLCLVCGDVAS-GFHYGVASCEAC 33 (183)
Q Consensus 11 ~~C~vC~~~~~-~~hyg~~~C~~C 33 (183)
..|.|||.+.. --.||..-|+-|
T Consensus 18 nrC~~cGr~rg~iRkfgl~lcR~c 41 (55)
T 2xzm_N 18 KECRVCGARQGLITKYEMMTCRRC 41 (55)
T ss_dssp CCCTTTCCSSTTCCCSSSCCCHHH
T ss_pred eEeecCCCCcchHHHhCCchhhHH
Confidence 56999999864 367888888877
No 148
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=24.71 E-value=47 Score=19.84 Aligned_cols=24 Identities=29% Similarity=0.913 Sum_probs=17.0
Q ss_pred CCcccccCCCCcccccccccccc--hh-hhh
Q psy16825 10 RRLCLVCGDVASGFHYGVASCEA--CK-AFF 37 (183)
Q Consensus 10 ~~~C~vC~~~~~~~hyg~~~C~~--C~-~FF 37 (183)
...| ||+.+..|. ++.|.+ |. .+|
T Consensus 16 ~~~C-~C~~~~~g~---MI~CD~~~C~~~wf 42 (71)
T 1wen_A 16 PTYC-LCHQVSYGE---MIGCDNPDCSIEWF 42 (71)
T ss_dssp CCCS-TTCCCSCSS---EECCSCSSCSCCCE
T ss_pred CCEE-ECCCCCCCC---EeEeeCCCCCCccE
Confidence 3469 799987663 667999 86 344
No 149
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=24.44 E-value=33 Score=20.30 Aligned_cols=28 Identities=18% Similarity=0.524 Sum_probs=19.4
Q ss_pred CCcccccCCCCcccccccccccchhhhhhcc
Q psy16825 10 RRLCLVCGDVASGFHYGVASCEACKAFFKRT 40 (183)
Q Consensus 10 ~~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~ 40 (183)
..-| ||+.+..|- -++.|..|..+|.-.
T Consensus 19 ~~~C-iC~~~~~~~--~MIqCd~C~~WfH~~ 46 (68)
T 3o70_A 19 LVTC-FCMKPFAGR--PMIECNECHTWIHLS 46 (68)
T ss_dssp CCCS-TTCCCCTTC--CEEECTTTCCEEETT
T ss_pred ceEe-ECCCcCCCC--CEEECCCCCcccccc
Confidence 3458 999876521 156799999888554
No 150
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.90 E-value=23 Score=22.17 Aligned_cols=24 Identities=33% Similarity=0.787 Sum_probs=18.2
Q ss_pred CcccccCCCCcc-cccccccccchh
Q psy16825 11 RLCLVCGDVASG-FHYGVASCEACK 34 (183)
Q Consensus 11 ~~C~vC~~~~~~-~hyg~~~C~~C~ 34 (183)
-.|+.||..+-. .-.|++.|..|.
T Consensus 36 y~CpfCGk~~vkR~a~GIW~C~kCg 60 (83)
T 3j21_i 36 HTCPVCGRKAVKRISTGIWQCQKCG 60 (83)
T ss_dssp BCCSSSCSSCEEEEETTEEEETTTC
T ss_pred cCCCCCCCceeEecCcCeEEcCCCC
Confidence 459999987643 567888899884
No 151
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=23.84 E-value=33 Score=23.37 Aligned_cols=53 Identities=25% Similarity=0.533 Sum_probs=33.0
Q ss_pred CCCcccccCCCCc-ccccccccccchhhhhhccccCCceeecCCCCCccc-----cccccccccchhhhHHhhh
Q psy16825 9 PRRLCLVCGDVAS-GFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEI-----NKRRRKACQACRFQKCLRK 76 (183)
Q Consensus 9 ~~~~C~vC~~~~~-~~hyg~~~C~~C~~FFrR~v~~~~~~~C~~~~~C~~-----~k~~r~~C~~CR~~KCl~~ 76 (183)
....|.+|+.+-. -..-| ..|..|+-. +|+ .|.+ .+...+.|..|+.++=+..
T Consensus 54 ~~~~C~~C~~~~g~l~~~g-~~C~~C~~~-----------VC~---~C~~~~~~~~~~~~W~C~vC~k~rel~~ 112 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSAS-VVCEDCKKN-----------VCT---KCGVETSNNRPHPVWLCKICLEQREVWK 112 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCE-EECTTTCCE-----------EET---TSEEECCCSSSSCCEEEHHHHHHHHHHH
T ss_pred CCccccccCCCcccccCCC-CCCCCCCcc-----------ccc---ccCCccCCCCCccceechhhHHHHHHHH
Confidence 3456999987652 12233 468888622 365 3544 2344689999999986654
No 152
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=23.21 E-value=34 Score=21.68 Aligned_cols=45 Identities=20% Similarity=0.619 Sum_probs=26.7
Q ss_pred CCcccccCCCCcccccccccccchh---hhhhccccCCceeecCCCCCccccccccccccc-hh
Q psy16825 10 RRLCLVCGDVASGFHYGVASCEACK---AFFKRTIQGNIEYTCPASNDCEINKRRRKACQA-CR 69 (183)
Q Consensus 10 ~~~C~vC~~~~~~~hyg~~~C~~C~---~FFrR~v~~~~~~~C~~~~~C~~~k~~r~~C~~-CR 69 (183)
...| ||+.+..|. ++.|.+|. .+|.-. |.+-..= ....+.|.. |+
T Consensus 26 ~~yC-iC~~~~~g~---MI~CD~c~C~~eWfH~~--------CVgl~~~---p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 26 EVYC-FCRNVSYGP---MVACDNPACPFEWFHYG--------CVGLKQA---PKGKWYCSKDCK 74 (90)
T ss_dssp SCCS-TTTCCCSSS---EECCCSSSCSCSCEETT--------TSSCSSC---TTSCCCSSHHHH
T ss_pred CcEE-EeCCCCCCC---EEEecCCCCccccCcCc--------cCCCCcC---CCCCccCChhhc
Confidence 3458 999987763 67899965 555332 5321110 124578888 86
No 153
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=23.08 E-value=48 Score=19.85 Aligned_cols=26 Identities=19% Similarity=0.689 Sum_probs=18.9
Q ss_pred cccccCCCCcccccccccccchhhhhhcc
Q psy16825 12 LCLVCGDVASGFHYGVASCEACKAFFKRT 40 (183)
Q Consensus 12 ~C~vC~~~~~~~hyg~~~C~~C~~FFrR~ 40 (183)
.| +|+.+..+- -++.|..|..+|.-.
T Consensus 18 ~C-~C~~~~~~~--~MI~Cd~C~~WfH~~ 43 (76)
T 1wem_A 18 YC-ICRQPHNNR--FMICCDRCEEWFHGD 43 (76)
T ss_dssp CS-TTCCCCCSS--CEEECSSSCCEEEHH
T ss_pred EE-ECCCccCCC--CEEEeCCCCCcEeCe
Confidence 48 899887632 257899999888554
No 154
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=22.60 E-value=19 Score=23.25 Aligned_cols=31 Identities=26% Similarity=0.532 Sum_probs=20.4
Q ss_pred CCCcccccCCCCcccccccccccchhhhhhcc
Q psy16825 9 PRRLCLVCGDVASGFHYGVASCEACKAFFKRT 40 (183)
Q Consensus 9 ~~~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~ 40 (183)
+...|++|+.+-. .--|...|.+|...|+..
T Consensus 31 M~~~CP~Cq~eL~-~~g~~~hC~~C~~~f~~~ 61 (101)
T 2jne_A 31 MELHCPQCQHVLD-QDNGHARCRSCGEFIEMK 61 (101)
T ss_dssp CCCBCSSSCSBEE-EETTEEEETTTCCEEEEE
T ss_pred ccccCccCCCcce-ecCCEEECccccchhhcc
Confidence 5578999998742 112223499998877664
No 155
>2hlg_A Fruit-specific protein; beta antiparallel, plant protein; NMR {Lycopersicon esculentum}
Probab=21.84 E-value=15 Score=19.14 Aligned_cols=21 Identities=29% Similarity=0.757 Sum_probs=14.2
Q ss_pred ecCCCCCccccccccccccchhhhH
Q psy16825 48 TCPASNDCEINKRRRKACQACRFQK 72 (183)
Q Consensus 48 ~C~~~~~C~~~k~~r~~C~~CR~~K 72 (183)
.|..+.+|. +...|++|.+++
T Consensus 5 yC~~NsDC~----GITlC~wCK~K~ 25 (39)
T 2hlg_A 5 PCSSNSDCI----GITLCQFCKEKT 25 (39)
T ss_dssp BCSSSGGGS----SSSSCCEEEEEE
T ss_pred cccCCCCee----eEEecccceecc
Confidence 455555564 456899998876
No 156
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=21.82 E-value=78 Score=20.33 Aligned_cols=29 Identities=17% Similarity=0.411 Sum_probs=19.5
Q ss_pred CCcccccCCCCcccccccccccchhhhhhcc
Q psy16825 10 RRLCLVCGDVASGFHYGVASCEACKAFFKRT 40 (183)
Q Consensus 10 ~~~C~vC~~~~~~~hyg~~~C~~C~~FFrR~ 40 (183)
...|.||++.... --.+.|.+|...|...
T Consensus 7 ~~~C~~C~~~g~~--~~ll~C~~C~~~~H~~ 35 (111)
T 2ysm_A 7 GANCAVCDSPGDL--LDQFFCTTCGQHYHGM 35 (111)
T ss_dssp CSCBTTTCCCCCT--TTSEECSSSCCEECTT
T ss_pred CCCCcCCCCCCCC--cCCeECCCCCCCcChH
Confidence 4569999987532 1236899998766544
No 157
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=21.57 E-value=19 Score=23.54 Aligned_cols=23 Identities=39% Similarity=0.826 Sum_probs=16.2
Q ss_pred cccccCCCCc-ccccccccccchh
Q psy16825 12 LCLVCGDVAS-GFHYGVASCEACK 34 (183)
Q Consensus 12 ~C~vC~~~~~-~~hyg~~~C~~C~ 34 (183)
.|+.||..+- -.-.|++.|..|.
T Consensus 38 ~CpfCgk~~vKR~a~GIW~C~kCg 61 (103)
T 4a17_Y 38 GCPFCGKVAVKRAAVGIWKCKPCK 61 (103)
T ss_dssp ECTTTCCEEEEEEETTEEEETTTT
T ss_pred CCCCCCCceeeecCcceEEcCCCC
Confidence 5888887653 2567888888883
No 158
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=20.51 E-value=38 Score=19.63 Aligned_cols=24 Identities=29% Similarity=0.708 Sum_probs=15.6
Q ss_pred cccccCCCCcccccccccccchhh
Q psy16825 12 LCLVCGDVASGFHYGVASCEACKA 35 (183)
Q Consensus 12 ~C~vC~~~~~~~hyg~~~C~~C~~ 35 (183)
.|.+|++.--|.-...+-|..|+.
T Consensus 25 ~C~~C~~~l~Gl~~qg~~C~~C~~ 48 (65)
T 2enz_A 25 FCEHCGTLLWGLARQGLKCDACGM 48 (65)
T ss_dssp BCSSSCCBCCCSSSCSEEESSSCC
T ss_pred CchhcChhheecCCcccccCCCCC
Confidence 477777766665555666777753
No 159
>2ll1_A U1-TRTX-SP1A; toxin; NMR {Theraphosidae}
Probab=20.27 E-value=10 Score=18.54 Aligned_cols=8 Identities=63% Similarity=1.614 Sum_probs=6.0
Q ss_pred chhhhHHh
Q psy16825 67 ACRFQKCL 74 (183)
Q Consensus 67 ~CR~~KCl 74 (183)
.|||-||+
T Consensus 24 qcrygkcl 31 (33)
T 2ll1_A 24 QCRYGKCL 31 (33)
T ss_dssp EEETTEEE
T ss_pred EeecceEe
Confidence 47888886
Done!