RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16825
(183 letters)
>d1lo1a_ g.39.1.2 (A:) Steroid hormone receptor Err2 DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 112 bits (282), Expect = 1e-33
Identities = 75/89 (84%), Positives = 85/89 (95%)
Query: 8 LPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQA 67
+P+RLCLVCGD+ASG+HYGVASCEACKAFFKRTIQGNIEY+CPA+N+CEI KRRRK+CQA
Sbjct: 2 IPKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQA 61
Query: 68 CRFQKCLRKGMLKEGVRLDRVRGGRQKYR 96
CRF K L+ GMLKEGVRLDRVRGGRQKY+
Sbjct: 62 CRFMKALKVGMLKEGVRLDRVRGGRQKYK 90
>d1dszb_ g.39.1.2 (B:) Retinoid X receptor (RXR-alpha) DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 106 bits (265), Expect = 4e-31
Identities = 43/82 (52%), Positives = 58/82 (70%)
Query: 8 LPRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQA 67
+ +C +CGD +SG HYGV SCE CK FFKRT++ ++ YTC + DC I+KR+R CQ
Sbjct: 3 FTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQY 62
Query: 68 CRFQKCLRKGMLKEGVRLDRVR 89
CR+QKCL GM +E V+ +R R
Sbjct: 63 CRYQKCLAMGMKREAVQEERQR 84
>d1cita_ g.39.1.2 (A:) Orphan nuclear receptor NGFI-B DNA-binding
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 89
Score = 105 bits (262), Expect = 1e-30
Identities = 49/87 (56%), Positives = 60/87 (68%)
Query: 13 CLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQK 72
C VCGD AS HYGV +CE CK FFKRT+Q + +Y C A+ DC ++KRRR CQ CRFQK
Sbjct: 3 CAVCGDNASCQHYGVRTCEGCKGFFKRTVQKSAKYICLANKDCPVDKRRRNRCQFCRFQK 62
Query: 73 CLRKGMLKEGVRLDRVRGGRQKYRRNP 99
CL GM+KE VR D ++G R + P
Sbjct: 63 CLAVGMVKEVVRTDSLKGRRGRLPSKP 89
>d1kb2a_ g.39.1.2 (A:) Vitamin D3 receptor, VDR, DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 99.7 bits (248), Expect = 2e-28
Identities = 36/84 (42%), Positives = 55/84 (65%)
Query: 11 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRF 70
R+C VCGD A+GFH+ +CE CK FF+R+++ +TCP + DC I K R+ CQACR
Sbjct: 1 RICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTCPFNGDCRITKDNRRHCQACRL 60
Query: 71 QKCLRKGMLKEGVRLDRVRGGRQK 94
++C+ GM+KE + D +++
Sbjct: 61 KRCVDIGMMKEFILTDEEVQRKRE 84
>d1a6ya_ g.39.1.2 (A:) Orphan nuclear receptor reverb DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 96.2 bits (239), Expect = 3e-27
Identities = 44/77 (57%), Positives = 54/77 (70%), Gaps = 1/77 (1%)
Query: 12 LCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYT-CPASNDCEINKRRRKACQACRF 70
LC VCGDVASGFHYGV +CE CK FF+R+IQ NI+Y C + +C I + R CQ CRF
Sbjct: 2 LCKVCGDVASGFHYGVLACEGCKGFFRRSIQQNIQYKRCLKNENCSIVRINRNRCQQCRF 61
Query: 71 QKCLRKGMLKEGVRLDR 87
+KCL GM ++ VR R
Sbjct: 62 KKCLSVGMSRDAVRFGR 78
>d2hanb1 g.39.1.2 (B:5-87) Ecdysone receptor DNA-binding domain
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 83
Score = 95.8 bits (238), Expect = 4e-27
Identities = 35/81 (43%), Positives = 47/81 (58%)
Query: 12 LCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQ 71
LCLVCGD ASG+HY +CE CK FF+R++ + Y C CE++ R+ CQ CR +
Sbjct: 2 LCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLK 61
Query: 72 KCLRKGMLKEGVRLDRVRGGR 92
KCL GM E V + +
Sbjct: 62 KCLAVGMRPECVVPENQCAMK 82
>d1r4ia_ g.39.1.2 (A:) Androgen receptor {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 74
Score = 94.4 bits (234), Expect = 2e-26
Identities = 37/73 (50%), Positives = 48/73 (65%)
Query: 9 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQAC 68
P++ CL+CGD ASG HYG +C +CK FFKR +G +Y C + NDC I+K RRK C +C
Sbjct: 1 PQKTCLICGDEASGAHYGALTCGSCKVFFKRAAEGKQKYLCASRNDCTIDKFRRKNCPSC 60
Query: 69 RFQKCLRKGMLKE 81
R +KC GM
Sbjct: 61 RLRKCYEAGMTLG 73
>d1dsza_ g.39.1.2 (A:) Retinoic acid receptor DNA-binding domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 93.2 bits (231), Expect = 4e-26
Identities = 42/74 (56%), Positives = 50/74 (67%)
Query: 13 CLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRFQK 72
C VC D +SG+HYGV++CE CK FF+R+IQ N+ YTC +C INK R CQ CR QK
Sbjct: 2 CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQK 61
Query: 73 CLRKGMLKEGVRLD 86
C GM KE VR D
Sbjct: 62 CFEVGMSKESVRND 75
>d1hcqa_ g.39.1.2 (A:) Estrogen receptor DNA-binding domain {Human
and chicken (Homo sapiens) and (Gallus gallus) [TaxId:
9606]}
Length = 74
Score = 89.8 bits (222), Expect = 9e-25
Identities = 46/72 (63%), Positives = 55/72 (76%)
Query: 9 PRRLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQAC 68
R C VC D ASG+HYGV SCE CKAFFKR+IQG+ +Y CPA+N C I+K RRK+CQAC
Sbjct: 3 ETRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQGHNDYMCPATNQCTIDKNRRKSCQAC 62
Query: 69 RFQKCLRKGMLK 80
R +KC GM+K
Sbjct: 63 RLRKCYEVGMMK 74
>d1lata_ g.39.1.2 (A:) Glucocorticoid receptor DNA-binding domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 71
Score = 88.6 bits (219), Expect = 2e-24
Identities = 41/71 (57%), Positives = 48/71 (67%)
Query: 11 RLCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYTCPASNDCEINKRRRKACQACRF 70
R CLVC D ASG HYGV +CE CKAFFKR ++G Y C C I+K RRK C ACR+
Sbjct: 1 RPCLVCSDEASGCHYGVLTCEGCKAFFKRAVEGQHNYLCKYEGKCIIDKIRRKNCPACRY 60
Query: 71 QKCLRKGMLKE 81
+KCL+ GM E
Sbjct: 61 RKCLQAGMNLE 71
>d2nllb_ g.39.1.2 (B:) Thyroid hormone receptor (TR-beta)
DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 82.1 bits (202), Expect = 2e-21
Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Query: 12 LCLVCGDVASGFHYGVASCEACKAFFKRTIQGNIEYT--CPASNDCEINKRRRKACQACR 69
LC+VCGD A+G+HY +CE CK FF+RTIQ N+ + C C I+K R CQ CR
Sbjct: 3 LCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECR 62
Query: 70 FQKCLRKGMLKEGVRLDRVRGGRQKYRR 97
F+KC+ GM + V D R ++K
Sbjct: 63 FKKCIYVGMATDLVLDDSKRLAKRKLIE 90
>d1pdua_ a.123.1.1 (A:) Nuclear hormone receptor HR38 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 230
Score = 37.7 bits (87), Expect = 3e-04
Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 2/87 (2%)
Query: 95 YRRNPDLLSQQWPPNKSIPSLEDLERNTEI--SCTQVIDRLEHVAVSKEEYYFLKALVLA 152
YR D + + + L E + L ++ + + L AL L
Sbjct: 88 YRARIDDTKLIFCNGTVLHRTQCLRSFGEWLNDIMEFSRSLHNLEIDISAFACLCALTLI 147
Query: 153 NSDVKLDEFSSLKKFRNSILSSLGDCI 179
L E +++ + I+ SL D +
Sbjct: 148 TERHGLREPKKVEQLQMKIIGSLRDHV 174
>d2qw4a1 a.123.1.1 (A:32-264) Orphan nuclear receptor NR4A1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 37.3 bits (86), Expect = 5e-04
Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 2/91 (2%)
Query: 95 YRRNPDLLSQQWPPNKSIPSLEDLERNTEI--SCTQVIDRLEHVAVSKEEYYFLKALVLA 152
YR P + + L+ + S L + V + L ALVL
Sbjct: 91 YRSKPGEGKLIFCSGLVLHRLQCARGFGDWIDSILAFSRSLHSLLVDVPAFACLSALVLI 150
Query: 153 NSDVKLDEFSSLKKFRNSILSSLGDCIYVLR 183
L E +++ +N I S L + + +
Sbjct: 151 TDRHGLQEPRRVEELQNRIASCLKEHVAAVA 181
>d1sqna_ a.123.1.1 (A:) Progesterone receptor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 251
Score = 36.2 bits (83), Expect = 0.001
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 125 SCTQVIDRLEHVAVSKEEYYFLKALVLANSDVK--LDEFSSLKKFRNSILSSLGDCIYVL 182
+ Q+ + VS+EE+ +K L+L N+ L + ++ R+S + L I +
Sbjct: 119 TMWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPLEGLRSQTQFEEMRSSYIRELIKAIGLR 178
Query: 183 R 183
+
Sbjct: 179 Q 179
>d3d24a1 a.123.1.1 (A:194-420) Steroid hormone receptor ERR1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 227
Score = 35.4 bits (81), Expect = 0.002
Identities = 17/53 (32%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 128 QVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCI 179
Q++ RL+ + + +EEY LKAL LANSD +++ ++++ R ++ +L +
Sbjct: 118 QLVRRLQALRLEREEYVLLKALALANSDSVHIEDAEAVEQLREALHEALLEYE 170
>d1nhza_ a.123.1.1 (A:) Glucocorticoid receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 247
Score = 35.5 bits (81), Expect = 0.002
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 125 SCTQVIDRLEHVAVSKEEYYFLKALVLANSDVK--LDEFSSLKKFRNSILSSLGDCI 179
V L + VS EEY +K L+L +S K L + R + + LG I
Sbjct: 116 HMLYVSSELHRLQVSYEEYLCMKTLLLLSSVPKDGLKSQELFDEIRMTYIKELGKAI 172
>d1xvpb_ a.123.1.1 (B:) Orphan nuclear receptor NR1I3 (CAR) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 246
Score = 35.0 bits (80), Expect = 0.003
Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 125 SCTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCI 179
L + + + EY L A+ L + D + + + + + + +L I
Sbjct: 139 LLFHFHGTLRKLQLQEPEYVLLAAMALFSPDRPGVTQRDEIDQLQEEMALTLQSYI 194
>d1ovla_ a.123.1.1 (A:) Orphan nuclear receptor NURR1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 236
Score = 34.6 bits (79), Expect = 0.003
Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 95 YRRNPDLLSQQWPPNKSIPSLEDLERNTEI--SCTQVIDRLEHVAVSKEEYYFLKALVLA 152
YR NP + + L+ + E S + L+++ + + + AL +
Sbjct: 91 YRSNPVEGKLIFCNGVVLHRLQCVRGFGEWIDSIVEFSSNLQNMNIDISAFSCIAALAMV 150
Query: 153 NSDVKLDEFSSLKKFRNSILSSLGDCI 179
L E +++ +N I++ L D +
Sbjct: 151 TERHGLKEPKRVEELQNKIVNCLKDHV 177
>d1hg4a_ a.123.1.1 (A:) Ultraspiracle protein, usp {Drosophila
melanogaster [TaxId: 7227]}
Length = 265
Score = 34.3 bits (78), Expect = 0.004
Identities = 11/80 (13%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 101 LLSQQWPPNKSIPSLEDLERNTEISCTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LD 159
L+Q + +++ + + +++ +++ + + + E LKA++L N D++ +
Sbjct: 128 FLNQSFSYHRNSAIKAGVSAIFDRILSELSVKMKRLNLDRRELSCLKAIILYNPDIRGIK 187
Query: 160 EFSSLKKFRNSILSSLGDCI 179
+ ++ R + + L +
Sbjct: 188 SRAEIEMCREKVYACLDEHC 207
>d1pzla_ a.123.1.1 (A:) Hepatocyte nuclear factor 4-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 233
Score = 33.5 bits (76), Expect = 0.007
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 101 LLSQQWPPNKSIPSLEDLERNTEISCTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LD 159
LL + + P L ++ R + +++ + + + EY +LKA++ + D K L
Sbjct: 99 LLGNDYIVPRHCPELAEMSRVSIRILDELVLPFQELQIDDNEYAYLKAIIFFDPDAKGLS 158
Query: 160 EFSSLKKFRNSILSSLGDCI 179
+ +K+ R+ + SL D I
Sbjct: 159 DPGKIKRLRSQVQVSLEDYI 178
>d1g2na_ a.123.1.1 (A:) Ultraspiracle protein, usp {Heliothis
virescens [TaxId: 7102]}
Length = 256
Score = 33.5 bits (76), Expect = 0.009
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 126 CTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCI 179
+++ ++ + V + EY LKA++L N DVK L ++ R + L +
Sbjct: 147 LSELSLKMRTLRVDQAEYVALKAIILLNPDVKGLKNRQEVEVLREKMFLCLDEYC 201
>d1xnxa_ a.123.1.1 (A:) Orphan nuclear receptor NR1I3 (CAR) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 232
Score = 33.1 bits (75), Expect = 0.010
Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 125 SCTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCI 179
S L+ + + + EY + A L + D + + + + + + L + I
Sbjct: 138 SILHFHKNLKGLHLQEPEYVLMAATALFSPDRPGVTQREEIDQLQEEMALILNNHI 193
>d1ie9a_ a.123.1.1 (A:) Vitamin D nuclear receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 255
Score = 33.1 bits (75), Expect = 0.012
Identities = 8/56 (14%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 125 SCTQVIDRLEHVAVSKEEYYFLKALVLANSDVKLDEFSS-LKKFRNSILSSLGDCI 179
+ L+ + + +EE+ L A+ + + D + ++ ++ ++ + ++L I
Sbjct: 144 PLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDAALIEAIQDRLSNTLQTYI 199
>d1xpca_ a.123.1.1 (A:) Estrogen receptor alpha {Human (Homo
sapiens) [TaxId: 9606]}
Length = 245
Score = 33.1 bits (75), Expect = 0.013
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 9/61 (14%)
Query: 128 QVIDRLEHVAVSKEEYYFLKALVLANSDVK---------LDEFSSLKKFRNSILSSLGDC 178
R + + EE+ LK+++L NS V L+E + + + I +L
Sbjct: 124 ATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLIHL 183
Query: 179 I 179
+
Sbjct: 184 M 184
>d2b50b1 a.123.1.1 (B:211-475) Peroxisome proliferator-activated
receptor delta, PPAR-DELTA {Human (Homo sapiens) [TaxId:
9606]}
Length = 265
Score = 33.0 bits (75), Expect = 0.013
Identities = 6/56 (10%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 125 SCTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCI 179
+ + + + + A ++ D L ++ +++IL +L +
Sbjct: 156 PKFEFAVKFNALELDDSDLALFIAAIILCGDRPGLMNVPRVEAIQDTILRALEFHL 211
>d2e2ra1 a.123.1.1 (A:234-456) Orphan nuclear receptor ERR3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 32.7 bits (74), Expect = 0.014
Identities = 15/53 (28%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 128 QVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCI 179
Q++ + + + + KEE+ LKA+ LANSD +++ +++K ++ + +L D
Sbjct: 118 QLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYE 170
>d1fcya_ a.123.1.1 (A:) Retinoic acid receptor gamma (RAR-gamma)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 32.7 bits (74), Expect = 0.016
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 128 QVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCI 179
+L + + E L A+ L D L+E + K + +L +L
Sbjct: 132 AFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYA 184
>d2r40d1 a.123.1.1 (D:287-529) Ecdysone receptor {Noctuid moth
(Heliothis virescens) [TaxId: 7102]}
Length = 243
Score = 32.7 bits (74), Expect = 0.019
Identities = 8/52 (15%), Positives = 22/52 (42%)
Query: 128 QVIDRLEHVAVSKEEYYFLKALVLANSDVKLDEFSSLKKFRNSILSSLGDCI 179
+ + + Y L A+V+ + L++ +++ + L++L I
Sbjct: 136 HFCRCMYSMMMDNVHYALLTAIVIFSDRPGLEQPLLVEEIQRYYLNTLRVYI 187
>d1nrla_ a.123.1.1 (A:) Pregnane x receptor, PXR {Human (Homo
sapiens) [TaxId: 9606]}
Length = 292
Score = 32.0 bits (72), Expect = 0.034
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 138 VSKEEYYFLKALVLANSDVKLDEFSS-LKKFRNSILSSLGDCI 179
+ +EEY ++A+ L + D + + + +L I
Sbjct: 194 LHEEEYVLMQAISLFSPDRPGVLQHRVVDQLQEQFAITLKSYI 236
>d1n46a_ a.123.1.1 (A:) Thyroid hormone receptor beta (TR-beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 31.9 bits (72), Expect = 0.034
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 128 QVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCI 179
+ L + E L+A++L +SD L ++K+++S L + I
Sbjct: 145 DLGMSLSSFNLDDTEVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYI 197
>d2p54a1 a.123.1.1 (A:202-468) Peroxisome proliferator activated
receptor alpha, PPAR-alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 267
Score = 31.5 bits (71), Expect = 0.037
Identities = 6/56 (10%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 125 SCTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCI 179
+ + + + A ++ D L ++K + I+ L +
Sbjct: 156 PKFDFAMKFNALELDDSDISLFVAAIICCGDRPGLLNVGHIEKMQEGIVHVLRLHL 211
>d1osha_ a.123.1.1 (A:) Bile acid receptor FXR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 231
Score = 31.5 bits (71), Expect = 0.039
Identities = 13/86 (15%), Positives = 31/86 (36%), Gaps = 1/86 (1%)
Query: 95 YRRNPDLLSQQWPPNKSIPSLEDLERNTEISCTQVIDRLEHVAVSKEEYYFLKALVLANS 154
N L S + + + + +++EEY L A+V+ +
Sbjct: 94 EIFNKKLPSGHSDLLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSP 153
Query: 155 DVK-LDEFSSLKKFRNSILSSLGDCI 179
D + + + +++K + +L L
Sbjct: 154 DRQYIKDREAVEKLQEPLLDVLQKLC 179
>d1pk5a_ a.123.1.1 (A:) Orphan nuclear receptor NR5a2 (LRH-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 242
Score = 31.5 bits (71), Expect = 0.041
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 126 CTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCI 179
+++ RL + + E+ LK LVL +SDVK L+ ++ + + ++L D
Sbjct: 133 AQELVVRLRSLQFDQREFVCLKFLVLFSSDVKNLENLQLVEGVQEQVNAALLDYT 187
>d2p1ta1 a.123.1.1 (A:229-458) Retinoid-X receptor alpha (RXR-alpha)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 230
Score = 30.0 bits (67), Expect = 0.14
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 126 CTQVIDRLEHVAVSKEEYYFLKALVLANSDVKLDEFSS-LKKFRNSILSSLGDCI 179
T+++ ++ + + K E L+A+VL N D K + ++ R + +SL
Sbjct: 122 LTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYC 176
>d2j7ya1 a.123.1.1 (A:217-452) Estrogen receptor beta {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 236
Score = 28.5 bits (63), Expect = 0.40
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Query: 126 CTQVIDRLEHVAVSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCIYVLR 183
R + + +EY +KA++L NS + L + + + L L
Sbjct: 119 LLATTSRFRELKLQHKEYLCVKAMILLNSSMYPLASANQEAESSRKLTHLLNAVTDALV 177
>d1n83a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 28.5 bits (63), Expect = 0.42
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 138 VSKEEYYFLKALVLANSDVK-LDEFSSLKKFRNSILSSLGDCI 179
++++E A VL ++D L E ++K + I +L +
Sbjct: 155 LTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVL 197
>d1u0sa_ d.58.24.1 (A:) CheY-binding domain of CheA {Thermotoga
maritima [TaxId: 2336]}
Length = 86
Score = 24.7 bits (54), Expect = 3.1
Identities = 9/48 (18%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 110 KSIPSLEDLERNTEISCTQVIDRLEHVAVSKEEYYFLKALVLANSDVK 157
++IPS+E++E + + +E +S + L + + +D++
Sbjct: 38 RTIPSVEEIEEE------KFENEVELFVISPVDLEKLSEALSSIADIE 79
>d1ybea2 d.41.2.2 (A:8-167) Nicotinate phosphoribosyltransferase,
N-terminal domain {Agrobacterium tumefaciens [TaxId:
358]}
Length = 160
Score = 24.8 bits (54), Expect = 5.0
Identities = 7/43 (16%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 128 QVIDRLEHVAVSKEEYYFLKAL--VLANSDVKLDEFSSLKKFR 168
+ +D + +SK+E +L + + + S L ++
Sbjct: 71 EQLDHARTLRLSKKENIWLAGNTFYGRSQIFEPEFLSWLSSYQ 113
>d2phcb1 b.62.1.4 (B:86-217) Uncharacterized protein PH0987
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 132
Score = 24.1 bits (52), Expect = 7.1
Identities = 3/14 (21%), Positives = 10/14 (71%)
Query: 131 DRLEHVAVSKEEYY 144
D ++ V + ++E++
Sbjct: 119 DYVKFVPIDEKEFW 132
>d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR,
N-terminal domain {Streptomyces sp. [TaxId: 1931]}
Length = 100
Score = 23.7 bits (51), Expect = 7.7
Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 100 DLLSQQWPPNKSIPSLEDLERNTEISCTQV---IDRLEH 135
+ S + P ++PS+ D+ ++ V + L+
Sbjct: 21 LIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKS 59
>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor
FadR, N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 74
Score = 23.2 bits (50), Expect = 8.4
Identities = 7/39 (17%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 100 DLLSQQWPPNKSIPSLEDLERNTEISCTQV---IDRLEH 135
+ + ++PP +P+ +L ++ T + + RL
Sbjct: 15 SIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLAR 53
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.419
Gapped
Lambda K H
0.267 0.0535 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 712,524
Number of extensions: 32984
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 55
Length of query: 183
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 103
Effective length of database: 1,309,196
Effective search space: 134847188
Effective search space used: 134847188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.5 bits)