Query psy16826
Match_columns 68
No_of_seqs 118 out of 995
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 23:02:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16826.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16826hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00014 myosin-A; Provisional 100.0 2.1E-29 4.6E-34 177.6 5.9 68 1-68 480-547 (821)
2 cd01383 MYSc_type_VIII Myosin 100.0 2.3E-29 5.1E-34 174.9 6.0 67 1-67 383-449 (677)
3 cd01387 MYSc_type_XV Myosin mo 100.0 3E-29 6.5E-34 174.4 6.1 68 1-68 379-446 (677)
4 COG5022 Myosin heavy chain [Cy 100.0 1.7E-29 3.7E-34 182.4 4.7 68 1-68 446-514 (1463)
5 cd01382 MYSc_type_VI Myosin mo 100.0 3.9E-29 8.5E-34 174.6 5.7 68 1-68 415-482 (717)
6 cd01385 MYSc_type_IX Myosin mo 100.0 4.9E-29 1.1E-33 173.6 6.0 67 1-67 395-461 (692)
7 cd01384 MYSc_type_XI Myosin mo 100.0 5.5E-29 1.2E-33 173.0 6.0 68 1-68 385-452 (674)
8 cd01381 MYSc_type_VII Myosin m 100.0 7E-29 1.5E-33 172.4 5.9 67 1-67 380-446 (671)
9 cd01378 MYSc_type_I Myosin mot 100.0 8.6E-29 1.9E-33 172.0 6.2 68 1-68 384-452 (674)
10 cd01379 MYSc_type_III Myosin m 100.0 9.1E-29 2E-33 171.5 5.9 67 1-67 391-457 (653)
11 cd01377 MYSc_type_II Myosin mo 99.9 3.2E-28 6.8E-33 169.6 6.2 68 1-68 392-460 (693)
12 smart00242 MYSc Myosin. Large 99.9 6.4E-28 1.4E-32 167.8 6.0 68 1-68 387-454 (677)
13 cd01380 MYSc_type_V Myosin mot 99.9 6.9E-28 1.5E-32 167.9 5.7 67 1-68 386-452 (691)
14 cd00124 MYSc Myosin motor doma 99.9 2E-27 4.3E-32 165.3 5.4 68 1-68 380-447 (679)
15 PF00063 Myosin_head: Myosin h 99.9 1.4E-26 3.1E-31 160.8 5.6 68 1-68 382-450 (689)
16 cd01386 MYSc_type_XVIII Myosin 99.9 1.8E-26 3.8E-31 162.2 5.4 68 1-68 397-479 (767)
17 KOG0164|consensus 99.9 1.1E-26 2.4E-31 161.1 3.2 68 1-68 393-460 (1001)
18 KOG0163|consensus 99.9 2.5E-24 5.5E-29 150.4 4.9 67 1-67 469-535 (1259)
19 KOG0161|consensus 99.9 1.6E-24 3.4E-29 160.8 3.2 66 1-67 466-532 (1930)
20 KOG0162|consensus 99.8 3.4E-22 7.4E-27 139.4 3.0 67 1-67 401-468 (1106)
21 KOG0160|consensus 99.8 1.4E-21 3E-26 138.1 4.3 66 1-67 386-451 (862)
22 KOG4229|consensus 99.8 1.2E-19 2.7E-24 130.4 3.8 67 1-67 445-511 (1062)
23 COG2153 ElaA Predicted acyltra 50.5 6.7 0.00015 23.6 0.5 29 8-36 117-145 (155)
24 smart00394 RIIa RIIalpha, Regu 35.5 30 0.00065 15.4 1.3 12 3-15 24-35 (38)
25 PF11346 DUF3149: Protein of u 31.3 19 0.00041 17.0 0.3 13 49-62 5-17 (42)
26 PF10875 DUF2670: Protein of u 29.7 40 0.00087 19.7 1.4 14 46-59 4-17 (139)
27 PF12900 Pyridox_ox_2: Pyridox 29.7 22 0.00048 20.2 0.4 23 43-65 1-23 (143)
28 PF09084 NMT1: NMT1/THI5 like; 28.2 60 0.0013 19.2 2.1 35 20-54 7-41 (216)
29 PHA03079 hypothetical protein; 24.8 72 0.0016 17.4 1.8 17 7-23 15-31 (87)
30 PF09247 TBP-binding: TATA box 24.1 17 0.00037 18.7 -0.7 8 61-68 32-39 (62)
31 PRK00085 recO DNA repair prote 23.5 20 0.00044 22.3 -0.5 34 29-63 4-37 (247)
32 PF15216 TSLP: Thymic stromal 22.9 1.7E+02 0.0037 17.0 4.6 55 11-65 9-69 (124)
33 PHA02649 hypothetical protein; 20.8 95 0.0021 17.2 1.8 17 7-23 16-32 (95)
No 1
>PTZ00014 myosin-A; Provisional
Probab=99.96 E-value=2.1e-29 Score=177.57 Aligned_cols=68 Identities=38% Similarity=0.573 Sum_probs=66.3
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHhhhhCCcccccccCChHHHHHHHhcCCCchhhcchhhhcC
Q psy16826 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKR 68 (68)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~~ 68 (68)
|||||||||||+||++|++++|+.|+++|.+|||+|..++|.||++|+|||+++|.|||++|||||+.
T Consensus 480 fEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~ 547 (821)
T PTZ00014 480 LEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLA 547 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999973
No 2
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=99.96 E-value=2.3e-29 Score=174.89 Aligned_cols=67 Identities=58% Similarity=1.075 Sum_probs=65.9
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHhhhhCCcccccccCChHHHHHHHhcCCCchhhcchhhhc
Q psy16826 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 67 (68)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~ 67 (68)
|||||||||||+||++|++++|..|+++|..|||.|..++|.||++|+|||+++|.|||++|||||+
T Consensus 383 fEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~ 449 (677)
T cd01383 383 FEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEEST 449 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHc
Confidence 6899999999999999999999999999999999999999999999999999999999999999996
No 3
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=99.96 E-value=3e-29 Score=174.38 Aligned_cols=68 Identities=57% Similarity=0.931 Sum_probs=66.3
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHhhhhCCcccccccCChHHHHHHHhcCCCchhhcchhhhcC
Q psy16826 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKR 68 (68)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~~ 68 (68)
|||||||||||+||++|++++|..++++|.+|||+|..++|.||++|+|||+++|.|||++|||||+.
T Consensus 379 fEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~ 446 (677)
T cd01387 379 FEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCF 446 (677)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999999999999999999999999999973
No 4
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=99.96 E-value=1.7e-29 Score=182.43 Aligned_cols=68 Identities=56% Similarity=1.050 Sum_probs=65.4
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHhhhhCCcccccccCChHHHHHHHhc-CCCchhhcchhhhcC
Q psy16826 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQAKR 68 (68)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~-~p~Gil~lLDee~~~ 68 (68)
||||||||+||||||+|++|+|+.||++|.+|||.|.+|+|.||++|+|||++ .|.||||+|||||+.
T Consensus 446 FEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~ 514 (1463)
T COG5022 446 FEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVM 514 (1463)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhcC
Confidence 78999999999999999999999999999999999999999999999999996 478999999999973
No 5
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=99.95 E-value=3.9e-29 Score=174.58 Aligned_cols=68 Identities=44% Similarity=0.863 Sum_probs=66.4
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHhhhhCCcccccccCChHHHHHHHhcCCCchhhcchhhhcC
Q psy16826 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKR 68 (68)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~~ 68 (68)
|||||||||||+||++|++++|..++++|.+|||+|.+++|.||++|+|||+++|.|||++|||||+.
T Consensus 415 fEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLDee~~~ 482 (717)
T cd01382 415 FEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDEENRL 482 (717)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhHHHhcC
Confidence 78999999999999999999999999999999999999999999999999999999999999999973
No 6
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=99.95 E-value=4.9e-29 Score=173.61 Aligned_cols=67 Identities=64% Similarity=1.190 Sum_probs=66.0
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHhhhhCCcccccccCChHHHHHHHhcCCCchhhcchhhhc
Q psy16826 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 67 (68)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~ 67 (68)
|||||||||||+||++|++++|..++++|..|||.|..++|.||++|++||+++|.|||++|||||+
T Consensus 395 fEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~ 461 (692)
T cd01385 395 FEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESN 461 (692)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhc
Confidence 7999999999999999999999999999999999999999999999999999999999999999997
No 7
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=99.95 E-value=5.5e-29 Score=172.97 Aligned_cols=68 Identities=56% Similarity=0.911 Sum_probs=66.3
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHhhhhCCcccccccCChHHHHHHHhcCCCchhhcchhhhcC
Q psy16826 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKR 68 (68)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~~ 68 (68)
|||||||||||+||++|++++|+.++++|..|||+|..++|.||++|+|||+++|.|||++|||||+.
T Consensus 385 fEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~ 452 (674)
T cd01384 385 FEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMF 452 (674)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999999999999999999999963
No 8
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=99.95 E-value=7e-29 Score=172.41 Aligned_cols=67 Identities=55% Similarity=0.980 Sum_probs=65.9
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHhhhhCCcccccccCChHHHHHHHhcCCCchhhcchhhhc
Q psy16826 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 67 (68)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~ 67 (68)
|||||||||||+||++|++++|+.++++|..|||.|..++|.||++|+|||+++|.|||++|||||+
T Consensus 380 fEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~ 446 (671)
T cd01381 380 FEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESK 446 (671)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhc
Confidence 6899999999999999999999999999999999999999999999999999999999999999997
No 9
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=99.95 E-value=8.6e-29 Score=172.04 Aligned_cols=68 Identities=47% Similarity=0.896 Sum_probs=66.2
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHhhhhCCcccccccCChHHHHHHHhc-CCCchhhcchhhhcC
Q psy16826 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQAKR 68 (68)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~-~p~Gil~lLDee~~~ 68 (68)
|||||||||||+||++|++++|..++++|..|||+|..++|.||++|+|||++ +|.|||++|||||+.
T Consensus 384 fEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~ 452 (674)
T cd01378 384 FEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCAT 452 (674)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999999999 899999999999973
No 10
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=99.95 E-value=9.1e-29 Score=171.47 Aligned_cols=67 Identities=54% Similarity=0.959 Sum_probs=65.8
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHhhhhCCcccccccCChHHHHHHHhcCCCchhhcchhhhc
Q psy16826 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 67 (68)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~ 67 (68)
||||||||||||||++|++++|..|+++|..|||+|..++|.||++|+|||+++|.|||++|||||+
T Consensus 391 fEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~ 457 (653)
T cd01379 391 FEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESR 457 (653)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhc
Confidence 7899999999999999999999999999999999999999999999999999999999999999997
No 11
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=99.95 E-value=3.2e-28 Score=169.61 Aligned_cols=68 Identities=51% Similarity=0.957 Sum_probs=65.7
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHhhhhCCccccccc-CChHHHHHHHhcCCCchhhcchhhhcC
Q psy16826 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAKR 68 (68)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~l~li~~~p~Gil~lLDee~~~ 68 (68)
|||||||||||+||++|++++|+.++++|..|||.|+.++| .||++|++||+++|.|||++|||||+.
T Consensus 392 fEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~ 460 (693)
T cd01377 392 FEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVF 460 (693)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcC
Confidence 78999999999999999999999999999999999999999 599999999999999999999999963
No 12
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=99.94 E-value=6.4e-28 Score=167.75 Aligned_cols=68 Identities=60% Similarity=1.114 Sum_probs=66.3
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHhhhhCCcccccccCChHHHHHHHhcCCCchhhcchhhhcC
Q psy16826 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKR 68 (68)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~~ 68 (68)
|||||||||||+||++|++++|..++++|.+|||+|+.++|.||++|++||+++|.|||++|||||+.
T Consensus 387 fEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~ 454 (677)
T smart00242 387 FEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRF 454 (677)
T ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999999999999999999999999999973
No 13
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=99.94 E-value=6.9e-28 Score=167.87 Aligned_cols=67 Identities=58% Similarity=1.032 Sum_probs=64.7
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHhhhhCCcccccccCChHHHHHHHhcCCCchhhcchhhhcC
Q psy16826 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKR 68 (68)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~~ 68 (68)
|||||||||||+||++|++++|..|+++|..|||+|+.++|.||++|+|||++ |.|||++|||||+.
T Consensus 386 fEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~lLdee~~~ 452 (691)
T cd01380 386 FEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSLLDEECRL 452 (691)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHHhHHhhcC
Confidence 68999999999999999999999999999999999999999999999999996 69999999999973
No 14
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=99.94 E-value=2e-27 Score=165.32 Aligned_cols=68 Identities=60% Similarity=1.068 Sum_probs=66.3
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHhhhhCCcccccccCChHHHHHHHhcCCCchhhcchhhhcC
Q psy16826 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKR 68 (68)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~~ 68 (68)
|||||||||||+||++|++++|..++++|..|||.|..++|.||++|+|||+++|.||+++|||||+.
T Consensus 380 fEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~ 447 (679)
T cd00124 380 FEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLF 447 (679)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999974
No 15
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=99.93 E-value=1.4e-26 Score=160.82 Aligned_cols=68 Identities=60% Similarity=1.111 Sum_probs=65.2
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHhhhhCCccccccc-CChHHHHHHHhcCCCchhhcchhhhcC
Q psy16826 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAKR 68 (68)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~l~li~~~p~Gil~lLDee~~~ 68 (68)
||||||||||||||++|++++|..++++|..|||.|+.++| .||.+|+|||+++|.|||++|||||++
T Consensus 382 fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~ 450 (689)
T PF00063_consen 382 FEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLL 450 (689)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTS
T ss_pred cccceeeeccccccceeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhc
Confidence 68999999999999999999999999999999999999999 999999999999999999999999974
No 16
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=99.93 E-value=1.8e-26 Score=162.16 Aligned_cols=68 Identities=35% Similarity=0.572 Sum_probs=63.1
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHhhhhCCccccccc-CChHHHHHHHhcCC--------------Cchhhcchhh
Q psy16826 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKP--------------NGLLCVLDDQ 65 (68)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~l~li~~~p--------------~Gil~lLDee 65 (68)
|||||||||||+||++|++++|+.|+++|..|||+|+.+.+ .||.+|+++|+++| .|||++||||
T Consensus 397 fEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lLDEe 476 (767)
T cd01386 397 FEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLLDEE 476 (767)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhhhHh
Confidence 79999999999999999999999999999999999987655 79999999999865 5999999999
Q ss_pred hcC
Q psy16826 66 AKR 68 (68)
Q Consensus 66 ~~~ 68 (68)
|++
T Consensus 477 c~~ 479 (767)
T cd01386 477 ALV 479 (767)
T ss_pred hcC
Confidence 974
No 17
>KOG0164|consensus
Probab=99.93 E-value=1.1e-26 Score=161.07 Aligned_cols=68 Identities=49% Similarity=0.888 Sum_probs=66.5
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHhhhhCCcccccccCChHHHHHHHhcCCCchhhcchhhhcC
Q psy16826 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKR 68 (68)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~~ 68 (68)
||||||||||||||+.|++.+++.||+||.+|||+|.+++|.+|.-++||++.+..||++||||||.|
T Consensus 393 FEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~ 460 (1001)
T KOG0164|consen 393 FEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLR 460 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcC
Confidence 79999999999999999999999999999999999999999999999999999999999999999976
No 18
>KOG0163|consensus
Probab=99.90 E-value=2.5e-24 Score=150.38 Aligned_cols=67 Identities=52% Similarity=0.948 Sum_probs=65.8
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHhhhhCCcccccccCChHHHHHHHhcCCCchhhcchhhhc
Q psy16826 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 67 (68)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~ 67 (68)
|||||||||||+||++|++++++.+|+.|..||+.++.|.|.||++|++||+.+..|||.|||||.+
T Consensus 469 FEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEak 535 (1259)
T KOG0163|consen 469 FEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAK 535 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhcc
Confidence 7899999999999999999999999999999999999999999999999999999999999999986
No 19
>KOG0161|consensus
Probab=99.90 E-value=1.6e-24 Score=160.78 Aligned_cols=66 Identities=53% Similarity=0.998 Sum_probs=64.0
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHhhhhCCccccccc-CChHHHHHHHhcCCCchhhcchhhhc
Q psy16826 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAK 67 (68)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~dn~~~l~li~~~p~Gil~lLDee~~ 67 (68)
||||||||+||+||++|++++|..++++|..|||.|.+|+| .|-++|++||++ |+||+|+|||||.
T Consensus 466 FEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIEk-p~Gi~slLdEEc~ 532 (1930)
T KOG0161|consen 466 FEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIEK-PMGILSLLDEECV 532 (1930)
T ss_pred HHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHhc-hhhHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999 899999999995 8899999999995
No 20
>KOG0162|consensus
Probab=99.85 E-value=3.4e-22 Score=139.35 Aligned_cols=67 Identities=43% Similarity=0.839 Sum_probs=64.4
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHhhhhCCcccccccCChHHHHHHHhc-CCCchhhcchhhhc
Q psy16826 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQAK 67 (68)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~-~p~Gil~lLDee~~ 67 (68)
|||+||||.|||||+.|++.+++.||++|.+|||.|.+|.|.||.-++|||+. +|.|||++||+.|.
T Consensus 401 FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~A 468 (1106)
T KOG0162|consen 401 FEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCA 468 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999996 68999999999884
No 21
>KOG0160|consensus
Probab=99.84 E-value=1.4e-21 Score=138.11 Aligned_cols=66 Identities=62% Similarity=1.060 Sum_probs=64.4
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHhhhhCCcccccccCChHHHHHHHhcCCCchhhcchhhhc
Q psy16826 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 67 (68)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~ 67 (68)
||||||||+||+||+.|.+|+|+.++++|..|+|+|..++|.||++|++++++ |.|++++|||+|.
T Consensus 386 feQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~ 451 (862)
T KOG0160|consen 386 FEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECM 451 (862)
T ss_pred HHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhcc
Confidence 68999999999999999999999999999999999999999999999999997 9999999999995
No 22
>KOG4229|consensus
Probab=99.78 E-value=1.2e-19 Score=130.45 Aligned_cols=67 Identities=60% Similarity=1.099 Sum_probs=65.5
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHHhhhhCCcccccccCChHHHHHHHhcCCCchhhcchhhhc
Q psy16826 1 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAK 67 (68)
Q Consensus 1 feql~iN~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLDee~~ 67 (68)
|||+|||+|||++|.+|.+++|..|+++|..|+|.|..+.|.||..|+++|..+|+|||++||||+.
T Consensus 445 fEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~ 511 (1062)
T KOG4229|consen 445 FEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESR 511 (1062)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCc
Confidence 6899999999999999999999999999999999999999999999999999999999999999985
No 23
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=50.54 E-value=6.7 Score=23.64 Aligned_cols=29 Identities=34% Similarity=0.476 Sum_probs=25.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhCCcc
Q psy16826 8 YANEHLQYYFNQHVFQYEQEEYNKEGIRW 36 (68)
Q Consensus 8 ~~nE~l~~~~~~~~f~~~~~~y~~Egi~~ 36 (68)
-|.+.||.+|-+.-|..-.++|...||+-
T Consensus 117 ~AQahLq~fYa~~GFv~~~e~yledGIpH 145 (155)
T COG2153 117 GAQAHLQDFYASFGFVRVGEEYLEDGIPH 145 (155)
T ss_pred ehHHHHHHHHHHhCcEEcCchhhcCCCCc
Confidence 36788999999999999999999999963
No 24
>smart00394 RIIa RIIalpha, Regulatory subunit portion of type II PKA R-subunit. RIIalpha, Regulatory subunit portion of type II PKA R-subunit. Contains dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).
Probab=35.47 E-value=30 Score=15.43 Aligned_cols=12 Identities=33% Similarity=0.537 Sum_probs=7.6
Q ss_pred hhhhhhhhHHHHH
Q psy16826 3 QLCINYANEHLQY 15 (68)
Q Consensus 3 ql~iN~~nE~l~~ 15 (68)
|+|.||. +++..
T Consensus 24 ~f~~~yF-~kL~~ 35 (38)
T smart00394 24 QFAADYF-EKLEE 35 (38)
T ss_pred HHHHHHH-HHHHH
Confidence 5777777 55543
No 25
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=31.28 E-value=19 Score=16.99 Aligned_cols=13 Identities=31% Similarity=0.588 Sum_probs=9.0
Q ss_pred HHHhcCCCchhhcc
Q psy16826 49 QLVEGKPNGLLCVL 62 (68)
Q Consensus 49 ~li~~~p~Gil~lL 62 (68)
+| .+.+.|++|++
T Consensus 5 ~L-F~s~vGL~Sl~ 17 (42)
T PF11346_consen 5 DL-FGSDVGLMSLI 17 (42)
T ss_pred HH-hcChHHHHHHH
Confidence 44 55688888875
No 26
>PF10875 DUF2670: Protein of unknown function (DUF2670); InterPro: IPR022714 This bacterial family of proteins has no known function and appears to be restricted to Rickettsiaceae.
Probab=29.67 E-value=40 Score=19.75 Aligned_cols=14 Identities=21% Similarity=0.501 Sum_probs=11.1
Q ss_pred HHHHHHhcCCCchh
Q psy16826 46 LCLQLVEGKPNGLL 59 (68)
Q Consensus 46 ~~l~li~~~p~Gil 59 (68)
..-.||.+.|||++
T Consensus 4 alrrlIaaNPMg~f 17 (139)
T PF10875_consen 4 ALRRLIAANPMGFF 17 (139)
T ss_pred HHHHHHhhCCchhh
Confidence 45578999999986
No 27
>PF12900 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024747 Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This entry contains several uncharacterised proteins, some annotated as pyridoxamine 5'-phosphate oxidase-related.; PDB: 3U5W_A 3U0I_A 2X1K_A 1W3Q_A 1W3P_A 1W3O_A 2VPA_A 2X1J_A 1W3R_A 3FKH_A ....
Probab=29.66 E-value=22 Score=20.23 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=17.2
Q ss_pred ChHHHHHHHhcCCCchhhcchhh
Q psy16826 43 DNTLCLQLVEGKPNGLLCVLDDQ 65 (68)
Q Consensus 43 dn~~~l~li~~~p~Gil~lLDee 65 (68)
|...+.++|...+.|.|++.|+.
T Consensus 1 d~~e~~~iL~~~~~g~la~~~~~ 23 (143)
T PF12900_consen 1 DREEIWEILDRAPVGRLAFVDDG 23 (143)
T ss_dssp -HHHHHHHHHH-SEEEEEEEETT
T ss_pred CHHHHHHHHhhCCEEEEEEEeCC
Confidence 45678889998889999988754
No 28
>PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine [, , ]. They are regulated by thiamine []. ; PDB: 2X26_A 3E4R_A 3KSJ_A 3KSX_A 3UIF_A 4DDD_A 1US4_A 1US5_A 3IX1_B 2X7P_A ....
Probab=28.21 E-value=60 Score=19.23 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhhhCCcccccccCChHHHHHHHhcC
Q psy16826 20 HVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK 54 (68)
Q Consensus 20 ~~f~~~~~~y~~Egi~~~~~~~~dn~~~l~li~~~ 54 (68)
.....++..|+++|+.+..+.+.+...+++.+...
T Consensus 7 ~~vA~~~G~f~~~gl~ve~~~~~~~~~~~~~l~~G 41 (216)
T PF09084_consen 7 LYVAQEKGYFKEEGLDVEIVFFGGGGDVLEALASG 41 (216)
T ss_dssp HHHHHHTTHHHHTTEEEEEEEESSHHHHHHHHHTT
T ss_pred HHHHHHcCCCccCeEEEEEEEecChhHHHHHHhcC
Confidence 34455677789999998888887778888887753
No 29
>PHA03079 hypothetical protein; Provisional
Probab=24.83 E-value=72 Score=17.40 Aligned_cols=17 Identities=18% Similarity=0.215 Sum_probs=13.1
Q ss_pred hhhhHHHHHHHHHHHHH
Q psy16826 7 NYANEHLQYYFNQHVFQ 23 (68)
Q Consensus 7 N~~nE~l~~~~~~~~f~ 23 (68)
|.+|||+-.+..+++=.
T Consensus 15 N~~NEK~lDcII~eie~ 31 (87)
T PHA03079 15 NIADEKFVDFVIHGLEH 31 (87)
T ss_pred hhhhhHHHHHHHHHHHH
Confidence 78899998888766544
No 30
>PF09247 TBP-binding: TATA box-binding protein binding; InterPro: IPR009067 In eukaryotes, the general transcription factor TFIID helps to regulate transcription by RNA polymerase II from class II promoters. TFIID consists of TATA-box-binding proteins (TBP) and TBP-associated factors (TAFIIs), which together mediate both activation and inhibition of transcription. In Drosophila, the N-terminal region of TAFII-230 (the TFIID 230kDa subunit) binds directly to TBP, thereby inhibiting the binding of TBP to the TATA box. The structure of TAFII-230 is comprised of three short helices in an irregular array, which forms the core that occupies the DNA-binding surface of TBP []. Note, the Gene3D model in this entry is hitting fewer proteins than it should and is under revision.; PDB: 1TBA_A.
Probab=24.13 E-value=17 Score=18.68 Aligned_cols=8 Identities=50% Similarity=0.750 Sum_probs=3.3
Q ss_pred cchhhhcC
Q psy16826 61 VLDDQAKR 68 (68)
Q Consensus 61 lLDee~~~ 68 (68)
+||+|+|+
T Consensus 32 ~lD~e~K~ 39 (62)
T PF09247_consen 32 YLDEEAKE 39 (62)
T ss_dssp ---TTTHH
T ss_pred ccCHHHHH
Confidence 57777763
No 31
>PRK00085 recO DNA repair protein RecO; Reviewed
Probab=23.47 E-value=20 Score=22.25 Aligned_cols=34 Identities=21% Similarity=0.410 Sum_probs=27.2
Q ss_pred hhhhCCcccccccCChHHHHHHHhcCCCchhhcch
Q psy16826 29 YNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLD 63 (68)
Q Consensus 29 y~~Egi~~~~~~~~dn~~~l~li~~~p~Gil~lLD 63 (68)
+..+||.....+|.+++-++.+++. ..|+++.+-
T Consensus 4 ~~~~giVL~~~~~~E~d~iv~l~T~-~~G~i~~~a 37 (247)
T PRK00085 4 YRDEGIVLHTRPYGETSLIVTLFTR-EHGRVRAVA 37 (247)
T ss_pred ccccEEEEecCCCcccchhhhcccc-ccCcEEEEE
Confidence 5678888778888999999999984 568887654
No 32
>PF15216 TSLP: Thymic stromal lymphopoietin
Probab=22.92 E-value=1.7e+02 Score=17.04 Aligned_cols=55 Identities=16% Similarity=0.312 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-hCCccccccc-CChHHHHHHHhc----CCCchhhcchhh
Q psy16826 11 EHLQYYFNQHVFQYEQEEYNK-EGIRWRHIEF-SDNTLCLQLVEG----KPNGLLCVLDDQ 65 (68)
Q Consensus 11 E~l~~~~~~~~f~~~~~~y~~-Egi~~~~~~~-~dn~~~l~li~~----~p~Gil~lLDee 65 (68)
|+++.-|...+|..-.+.... -......+-| .+.++|+-.|+. +..|--|+.+|.
T Consensus 9 ~kI~k~Y~~~I~~~L~~ymngtkst~FN~~~~C~~r~~CLtkIe~~Tfnp~~gC~SLa~e~ 69 (124)
T PF15216_consen 9 EKIQKIYENIIFHDLLKYMNGTKSTEFNNTVYCEDRPDCLTKIERLTFNPTPGCPSLAKET 69 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCcccccCccccCCchhHHHHHHHHhcCCCCCchhHHHHH
Confidence 688888888888754333221 2234444444 677889877764 446777776653
No 33
>PHA02649 hypothetical protein; Provisional
Probab=20.85 E-value=95 Score=17.21 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=13.0
Q ss_pred hhhhHHHHHHHHHHHHH
Q psy16826 7 NYANEHLQYYFNQHVFQ 23 (68)
Q Consensus 7 N~~nE~l~~~~~~~~f~ 23 (68)
|.+|||+-.+.++++=.
T Consensus 16 N~~NEK~lDcII~eie~ 32 (95)
T PHA02649 16 NYGNEKIIDCIIYEIEN 32 (95)
T ss_pred hhhhhHHHHHHHHHHHH
Confidence 78899988887766544
Done!