RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16826
         (68 letters)



>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
           discoideum, class-I myosin MyoE [TaxId: 44689]}
          Length = 684

 Score = 70.5 bits (172), Expect = 7e-17
 Identities = 31/68 (45%), Positives = 44/68 (64%)

Query: 1   FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 60
           FEQL IN+ NE LQ  F +   + EQEEY +EGI W++IE+ +N    +L+E KP GL+ 
Sbjct: 390 FEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLIS 449

Query: 61  VLDDQAKR 68
           +LD+    
Sbjct: 450 LLDEACLI 457


>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 794

 Score = 66.7 bits (162), Expect = 2e-15
 Identities = 31/65 (47%), Positives = 42/65 (64%)

Query: 1   FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 60
           FEQLCIN+ NE LQ +FN H+F  EQEEY KEGI W  I+F  +      +  KP G+  
Sbjct: 426 FEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPMGIFS 485

Query: 61  VLDDQ 65
           +L+++
Sbjct: 486 ILEEE 490


>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
           scallop (Aequipecten irradians) [TaxId: 31199]}
          Length = 789

 Score = 65.5 bits (159), Expect = 4e-15
 Identities = 33/68 (48%), Positives = 43/68 (63%)

Query: 1   FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 60
           FEQLCINY NE LQ +FN H+F  EQEEY KEGI W  I+F  +      +  KP G+L 
Sbjct: 424 FEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPMGILS 483

Query: 61  VLDDQAKR 68
           +L+++   
Sbjct: 484 ILEEECMF 491


>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 710

 Score = 64.8 bits (157), Expect = 7e-15
 Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 1   FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG--KPNG 57
           FEQLCINY NE LQ  FN  +F  EQEEY +EGI W  I+F  D   C++L+E    P G
Sbjct: 398 FEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPG 457

Query: 58  LLCVLDDQAKR 68
           +L +LD++   
Sbjct: 458 VLALLDEECWF 468


>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
           (Gallus gallus), Va isoform [TaxId: 9031]}
          Length = 730

 Score = 63.2 bits (153), Expect = 2e-14
 Identities = 38/65 (58%), Positives = 46/65 (70%), Gaps = 1/65 (1%)

Query: 1   FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 60
           FEQ CINYANE LQ  FN HVF+ EQEEY KE I W  I+F DN  C+ L+E K  G+L 
Sbjct: 387 FEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLD 445

Query: 61  VLDDQ 65
           +LD++
Sbjct: 446 LLDEE 450


>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
           {Dictyostelium discoideum [TaxId: 44689]}
          Length = 712

 Score = 59.7 bits (144), Expect = 4e-13
 Identities = 36/67 (53%), Positives = 48/67 (71%), Gaps = 2/67 (2%)

Query: 1   FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGL 58
           FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D+   + L++G +P G+
Sbjct: 419 FEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGI 478

Query: 59  LCVLDDQ 65
           L +LD+Q
Sbjct: 479 LALLDEQ 485


>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
          Length = 476

 Score = 24.9 bits (54), Expect = 0.85
 Identities = 8/39 (20%), Positives = 10/39 (25%)

Query: 6   INYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 44
           I Y       +  Q  F+            W H E  D 
Sbjct: 377 ITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDY 415


>d1e6yc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
          {Archaeon Methanosarcina barkeri [TaxId: 2208]}
          Length = 247

 Score = 22.4 bits (48), Expect = 6.2
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 31 KEGIRWRHIEFSD 43
            G R R+I+F+D
Sbjct: 77 AAGDRVRYIQFAD 89


>d1hbnc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
          {Archaeon Methanobacterium thermoautotrophicum [TaxId:
          145262]}
          Length = 247

 Score = 22.4 bits (48), Expect = 6.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 31 KEGIRWRHIEFSD 43
          K G R R+I+F+D
Sbjct: 76 KAGDRVRYIQFTD 88


>d1e6vc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
          {Archaeon Methanopyrus kandleri [TaxId: 2320]}
          Length = 248

 Score = 22.4 bits (48), Expect = 6.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 31 KEGIRWRHIEFSD 43
          K G R R+I+F+D
Sbjct: 75 KAGDRIRYIQFTD 87


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.140    0.445 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 261,407
Number of extensions: 9735
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 15
Length of query: 68
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 31
Effective length of database: 1,899,586
Effective search space: 58887166
Effective search space used: 58887166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.4 bits)