BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16828
(372 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 89/188 (47%), Gaps = 5/188 (2%)
Query: 131 LTHMQKDTSISIDVISEIKK-FKCDQCDYATKDKYNLGTHIKRRHTKEYSVLCTQCGFGC 189
++ +S++ + +K + C +C + +L H +R HT E C +CG
Sbjct: 1 ISEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSF 59
Query: 190 YTNRELEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSR 249
++L HQ G +PY C C K+F++R N++ H+R H KPY C C K
Sbjct: 60 SDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRT-HTGEKPYACPECGKSFSQL 118
Query: 250 GRLNEHLNQVHLAQR-FECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYV 308
L H + H ++ ++C C K+ E H H+ KP+ C CGK F + +
Sbjct: 119 AHLRAH-QRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDAL 177
Query: 309 NLHMRTHT 316
N+H RTHT
Sbjct: 178 NVHQRTHT 185
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 80/174 (45%), Gaps = 5/174 (2%)
Query: 200 ILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHLNQV 259
L G +PY C C K+F++ ++ H+R H KPY+C C K + L H +
Sbjct: 14 ALEPGEKPYACPECGKSFSRSDHLAEHQRT-HTGEKPYKCPECGKSFSDKKDLTRH-QRT 71
Query: 260 HLAQR-FECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRI 318
H ++ ++C C K+ + H H+ KP+ C CGK F ++ H RTHT
Sbjct: 72 HTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGE 131
Query: 319 RPTFECDVCHQIFP-TDFRTKHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
+P ++C C + F D H H EK + C CG F L VH R H
Sbjct: 132 KP-YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 77/174 (44%), Gaps = 14/174 (8%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSIS 141
P C CGK SR D L H K Y C +C + F++ L +H TH +
Sbjct: 21 PYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGE----- 75
Query: 142 IDVISEIKKFKCDQCDYATKDKYNLGTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQIL 201
K +KC +C + + NL H +R HT E C +CG L HQ
Sbjct: 76 -------KPYKCPECGKSFSQRANLRAH-QRTHTGEKPYACPECGKSFSQLAHLRAHQRT 127
Query: 202 THGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEH 255
G +PY C C K+F++ N+ TH+R H KPY+C C K R LN H
Sbjct: 128 HTGEKPYKCPECGKSFSREDNLHTHQRT-HTGEKPYKCPECGKSFSRRDALNVH 180
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 81/219 (36%), Gaps = 49/219 (22%)
Query: 11 AIEPKPSKYIKVECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTML 70
A+EP Y CP CGK SR L H R+ HT
Sbjct: 14 ALEPGEKPYA---CPECGKSFSRSDHLAEHQRT-HTG----------------------- 46
Query: 71 MLDHKKPKSRAPVECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHM 130
P +C CGK S K LTRH K Y C +C + F+ L+ H
Sbjct: 47 ---------EKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQ 97
Query: 131 LTHMQKDTSISIDVISEIKKFKCDQCDYATKDKYNLGTHIKRRHTKEYSVLCTQCGFGCY 190
TH + K + C +C + +L H +R HT E C +CG
Sbjct: 98 RTHTGE------------KPYACPECGKSFSQLAHLRAH-QRTHTGEKPYKCPECGKSFS 144
Query: 191 TNRELEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERM 229
L HQ G +PY C C K+F++R + H+R
Sbjct: 145 REDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRT 183
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Query: 24 CPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAPV 83
CP CGK S+++ L +H R+ HT P A + + SQ+ L + P
Sbjct: 80 CPECGKSFSQRANLRAHQRT-HTGEKPYACPECGKS---FSQL-AHLRAHQRTHTGEKPY 134
Query: 84 ECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTHMQKDTS 139
+C CGK SR+D L H K Y C +C + F+ L H TH K TS
Sbjct: 135 KCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKTS 190
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFP-TDFRTKHMLVHDVEKSH 349
K F+C CG+ F Y + +H RTHT RP + CD+CH+ F D H +H EK
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERP-YTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 350 LCFVCGAGFVNDAGLKVH 367
C CG GF L VH
Sbjct: 75 KCQECGKGFCQSRTLAVH 92
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 47/109 (43%), Gaps = 33/109 (30%)
Query: 210 CKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHLNQVHLAQRFECKL 269
CK+C + FTK N+ HER H + +PY C IC+K R +HL
Sbjct: 20 CKFCGRHFTKSYNLLIHERT-HTDERPYTCDICHKAF----RRQDHL------------- 61
Query: 270 CHKTIVSEKTFKKHMALHSDAKPFVCNICGKDF----KLKYYVNLHMRT 314
+ H +HS KPF C CGK F L + LHM+T
Sbjct: 62 -----------RDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQT 99
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 265 FECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
F CK C + H H+D +P+ C+IC K F+ + ++ H H++ +P F+C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP-FKC 76
Query: 325 DVCHQIF 331
C + F
Sbjct: 77 QECGKGF 83
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 28/72 (38%)
Query: 70 LMLDHKKPKSRAPVECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQH 129
L++ + P C C K R+D L H K + C++C + F L H
Sbjct: 33 LLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH 92
Query: 130 MLTHMQKDTSIS 141
HMQ + +
Sbjct: 93 KTLHMQTSSPTA 104
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Query: 149 KKFKCDQCDYATKDKYNLGTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQILTHGAEPY 208
K+F C C YNL H +R HT E C C L +H+ + +P+
Sbjct: 16 KEFICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 209 HCKYCDKTFTKRMNVKTHERMKHENHKP 236
C+ C K F + + H+ + + P
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLHMQTSSP 102
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 180 VLCTQCGFGCYTNRELEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
+C CG + L H+ PY C C K F ++ +++ H R H KP++C
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSKEKPFKC 76
Query: 240 YICNKILVSRGRLNEH 255
C K L H
Sbjct: 77 QECGKGFCQSRTLAVH 92
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 45/107 (42%), Gaps = 28/107 (26%)
Query: 265 FECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
F+CK+C K+ T H+ +HSD +P+ C CGK F K
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQK------------------- 42
Query: 325 DVCHQIFPTDFRTKHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
+D + KH +H EK H C VCG F + L H RKH
Sbjct: 43 --------SDMK-KHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%)
Query: 237 YECYICNKILVSRGRLNEHLNQVHLAQRFECKLCHKTIVSEKTFKKHMALHSDAKPFVCN 296
++C IC K L+ HL + + C+ C K + KKH +H+ KP C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 297 ICGKDFKLKYYVNLHMRTHT 316
+CGK F + H R HT
Sbjct: 62 VCGKAFSQSSNLITHSRKHT 81
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 13/93 (13%)
Query: 83 VECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSISI 142
+C CGK R L+ H+ + YPC+ C ++F +K+H H +
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGE------ 55
Query: 143 DVISEIKKFKCDQCDYATKDKYNLGTHIKRRHT 175
K KC C A NL TH R+HT
Sbjct: 56 ------KPHKCQVCGKAFSQSSNLITH-SRKHT 81
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 151 FKCDQCDYATKDKYNLGTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQILTHGAEPYHC 210
F C C + K L TH+ H+ C CG + ++++H + G +P+ C
Sbjct: 2 FDCKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 211 KYCDKTFTKRMNVKTHER 228
+ C K F++ N+ TH R
Sbjct: 61 QVCGKAFSQSSNLITHSR 78
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 45/118 (38%), Gaps = 39/118 (33%)
Query: 22 VECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRA 81
+C +CGK R S L +H+ L H +
Sbjct: 2 FDCKICGKSFKRSSTLSTHL------------------------------LIHSDTR--- 28
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTHMQKDT 138
P C YCGK +K + +H +H+G K + C+ C + F+ L +TH +K T
Sbjct: 29 PYPCQYCGKRFHQKSDMKKH-TFIHTGEKPHKCQVCGKAFSQSSNL----ITHSRKHT 81
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 270 CHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQ 329
C K+ + +HM++H +P+ C +CGK FK+K+++ HM+ HT I+P +EC++C +
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP-YECNICAK 73
Query: 330 IF 331
F
Sbjct: 74 RF 75
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 184 QCGFGCYTNRELEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICN 243
QCG + + H + G PY C C K F + ++ H ++ H KPYEC IC
Sbjct: 14 QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI-HTGIKPYECNICA 72
Query: 244 KILVSRGRLNEHLN 257
K + R + H+
Sbjct: 73 KRFMWRDSFHRHVT 86
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 235 KPYECYICNKILVSRGRLNEHLNQVHLAQR-FECKLCHKTIVSEKTFKKHMALHSDAKPF 293
K Y C C K + + + H++ +HL R + C +C K + HM +H+ KP+
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPY 66
Query: 294 VCNICGKDFKLKYYVNLHMRTHTR 317
CNIC K F + + H+ + T+
Sbjct: 67 ECNICAKRFMWRDSFHRHVTSCTK 90
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 12/69 (17%)
Query: 88 CGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSISIDVISE 147
CGK + K + RH++ + Y C C +KF K+K H++ HM+ T
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKF----KMKHHLVGHMKIHTG-------- 62
Query: 148 IKKFKCDQC 156
IK ++C+ C
Sbjct: 63 IKPYECNIC 71
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 270 CHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQ 329
C + + H+ +H+ KPF C IC ++F + +N H+RTHT +P F CD+C +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP-FACDICGR 70
Query: 330 IFPT-DFRTKHMLVHDVEK 347
F T RT+H +H +K
Sbjct: 71 KFATLHTRTRHTKIHLRQK 89
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 10/88 (11%)
Query: 235 KPYECYI--CNKILVSRGRLNEHLNQVHLAQR-FECKLCHKTIVSEKTFKKHMALHSDAK 291
+PY C + C++ + L+ H+ ++H Q+ F+C++C + + + H+ H+ K
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHI-RIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 292 PFVCNICGKDFKLKYYVNLHMRT-HTRI 318
PF C+ICG+ F LH RT HT+I
Sbjct: 62 PFACDICGRKF-----ATLHTRTRHTKI 84
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 291 KPFVCNI--CGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFPTDFR-TKHMLVHDVEK 347
+P+ C + C + F K ++ H+R HT +P F+C +C + F H+ H EK
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKP-FQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 348 SHLCFVCGAGFVN----DAGLKVHMRK 370
C +CG F K+H+R+
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIHLRQ 88
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 195 LEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNE 254
L+ H + G +P+ C+ C + F+++ ++ H R H KP+ C IC + +
Sbjct: 22 LDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRT-HTGEKPFACDICGRKFATLHTRTR 80
Query: 255 HLNQVHLAQR 264
H ++HL Q+
Sbjct: 81 H-TKIHLRQK 89
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTHM-QKD 137
P +C C + S++ L HI K + C+ C RKF + +H H+ QKD
Sbjct: 34 PFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHLRQKD 90
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 25/98 (25%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSI 140
PVE C + S+K L HI +H+G K + C C R F+ L H+ TH +
Sbjct: 8 PVE--SCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE---- 60
Query: 141 SIDVISEIKKFKCDQCD--YATKDKYNLGTHIKRRHTK 176
K F CD C +AT H + RHTK
Sbjct: 61 --------KPFACDICGRKFAT-------LHTRTRHTK 83
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 154 DQCDYATKDKYNLGTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQILTH-GAEPYHCKY 212
+ CD K NL THI R HT + C C L H I TH G +P+ C
Sbjct: 10 ESCDRRFSQKTNLDTHI-RIHTGQKPFQCRICMRNFSQQASLNAH-IRTHTGEKPFACDI 67
Query: 213 CDKTF----TKRMNVKTHERMK 230
C + F T+ + K H R K
Sbjct: 68 CGRKFATLHTRTRHTKIHLRQK 89
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 236 PYECYICNKILVSRGRLNEHLNQVHLAQRFECKLCHKTIVSEKTFKKHMALHSDAKPFVC 295
P++C +C K + +L H+ + ++CK C + KH+ +HSD +PF C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 296 NICGKDFKLKYYVNLHMRTHT 316
IC + + +H+R+HT
Sbjct: 68 QICPYASRNSSQLTVHLRSHT 88
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 46/99 (46%), Gaps = 13/99 (13%)
Query: 79 SRAPVECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTHMQKDT 138
S P +C CGK SRKDKL H+ K Y C+ CD + L +H+ H
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH----- 59
Query: 139 SISIDVISEIKKFKCDQCDYATKDKYNLGTHIKRRHTKE 177
S+ + FKC C YA+++ L H+ R HT +
Sbjct: 60 -------SDERPFKCQICPYASRNSSQLTVHL-RSHTGD 90
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 290 AKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVC-HQIFPTDFRTKHMLVHDVEKS 348
+ P C +CGK F K + HMR HT ++P ++C C + + KH+ +H E+
Sbjct: 6 SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRIHSDERP 64
Query: 349 HLCFVCGAGFVNDAGLKVHMRKH 371
C +C N + L VH+R H
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSH 87
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 182 CTQCGFGCYTNRE-LEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYECY 240
C CG C++ ++ L+ H G +PY CK CD ++ H R+ H + +P++C
Sbjct: 11 CEVCGK-CFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-HSDERPFKCQ 68
Query: 241 ICNKILVSRGRLNEHL 256
IC + +L HL
Sbjct: 69 ICPYASRNSSQLTVHL 84
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
+C VCGK SRK KL +HMR HT V P + + S + L + P
Sbjct: 10 KCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIH----SDERP 64
Query: 83 VECSYCGKVLSRKDKLTRHIAAVHSGKEYP 112
+C C +LT H+ + H+G P
Sbjct: 65 FKCQICPYASRNSSQLTVHLRS-HTGDSGP 93
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 44/132 (33%), Gaps = 43/132 (32%)
Query: 107 SGKEYP--CEQCDRKFTNGYKLKQHMLTHMQKDTSISIDVISEIKKFKCDQCDYATKDKY 164
SG P CE C + F+ KLK HM H + +K +KC CDYA D
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCH------------TGVKPYKCKTCDYAAADSS 50
Query: 165 NLGTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQILTHGAEPYHCKYCDKTFTKRMNVK 224
+L H+ R H+ E P+ C+ C +
Sbjct: 51 SLNKHL-RIHSDE----------------------------RPFKCQICPYASRNSSQLT 81
Query: 225 THERMKHENHKP 236
H R + P
Sbjct: 82 VHLRSHTGDSGP 93
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
Query: 202 THGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHLNQVHL 261
+ G+ C C K F + +K H R KH KP+EC C K + L EH + +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNR-KHTGEKPFECPKCGKCYFRKENLLEHEARNCM 60
Query: 262 ---AQRFECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHM 312
Q F C +C +T + HM H+ P+ C+ C + F K + HM
Sbjct: 61 NRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHM 114
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 47/108 (43%), Gaps = 3/108 (2%)
Query: 266 ECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTH--TRIRPTFE 323
EC CHK +S+ K H H+ KPF C CGK + K + H + R F
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 324 CDVCHQIFPTDFRTK-HMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRK 370
C VC + F + HM+ H E + C C F+ L+ HM K
Sbjct: 69 CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIK 116
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Query: 288 SDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFPTDFRTKHMLVHDV-- 345
S + C C K F KYY+ +H R HT +P FEC C + + FR +++L H+
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKCGKCY---FRKENLLEHEARN 58
Query: 346 -----EKSHLCFVCGAGFVNDAGLKVHMRKH 371
E+ C VC F L++HM H
Sbjct: 59 CMNRSEQVFTCSVCQETFRRRMELRLHMVSH 89
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 15/109 (13%)
Query: 70 LMLDHKKPKSRAPVECSYCGKVLSRKDKLTRHIA---AVHSGKEYPCEQCDRKFTNGYKL 126
L + ++K P EC CGK RK+ L H A S + + C C F +L
Sbjct: 23 LKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMEL 82
Query: 127 KQHMLTHMQKDTSISIDVISEIKKFKCDQCDYATKDKYNLGTHIKRRHT 175
+ HM++H + +KC C K +L +H+ + H+
Sbjct: 83 RLHMVSHTGE------------MPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 14/116 (12%)
Query: 113 CEQCDRKFTNGYKLKQHMLTHMQKDTSISIDVISEIKKFKCDQCDYATKDKYNLGTHIKR 172
C C +KF + Y LK H H + K F+C +C K NL H R
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGE------------KPFECPKCGKCYFRKENLLEHEAR 57
Query: 173 R--HTKEYSVLCTQCGFGCYTNRELEEHQILTHGAEPYHCKYCDKTFTKRMNVKTH 226
+ E C+ C EL H + G PY C C + F ++ ++++H
Sbjct: 58 NCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 38/110 (34%), Gaps = 30/110 (27%)
Query: 22 VECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRA 81
ECP CGK RK L+ H EA N +S
Sbjct: 36 FECPKCGKCYFRKENLLEH----------EARNCMN--------------------RSEQ 65
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHML 131
CS C + R+ +L H+ + Y C C ++F L+ HM+
Sbjct: 66 VFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMI 115
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIF--PTDFRTKHMLVHDVEKS 348
KP+ C CGK F + H RTHT +P ++C C + F +D + KH H EK
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKP-YKCPECGKSFSQSSDLQ-KHQRTHTGEKP 60
Query: 349 HLCFVCGAGFVNDAGLKVHMRKHQ 372
+ C CG F L H R HQ
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTHQ 84
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 235 KPYECYICNKILVSRGRLNEHLNQVHLAQR-FECKLCHKTIVSEKTFKKHMALHSDAKPF 293
KPY+C C K L +H + H ++ ++C C K+ +KH H+ KP+
Sbjct: 3 KPYKCPECGKSFSQSSNLQKH-QRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 294 VCNICGKDFKLKYYVNLHMRTH 315
C CGK F +++ H RTH
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTH 83
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 261 LAQRFECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRP 320
+ + ++C C K+ +KH H+ KP+ C CGK F + H RTHT +P
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 321 TFECDVCHQIFP-TDFRTKHMLVHDVEK 347
++C C + F +D ++H H +K
Sbjct: 61 -YKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 149 KKFKCDQCDYATKDKYNLGTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQILTHGAEPY 208
K +KC +C + NL H +R HT E C +CG + +L++HQ G +PY
Sbjct: 3 KPYKCPECGKSFSQSSNLQKH-QRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 209 HCKYCDKTFTKRMNVKTHERMKHENHK 235
C C K+F++ ++ H+R H+N K
Sbjct: 62 KCPECGKSFSRSDHLSRHQRT-HQNKK 87
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 40/114 (35%), Gaps = 33/114 (28%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
+CP CGK S+ S L H R+ HT P
Sbjct: 6 KCPECGKSFSQSSNLQKHQRT-HT--------------------------------GEKP 32
Query: 83 VECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTHMQK 136
+C CGK S+ L +H K Y C +C + F+ L +H TH K
Sbjct: 33 YKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNK 86
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTH 133
P +C CGK S+ L +H K Y C +C + F+ L++H TH
Sbjct: 4 PYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTH 55
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 270 CHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQ 329
C + + +H+ +H+ KPF C IC ++F ++ H+RTHT +P F CD+C +
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGR 70
Query: 330 IFP-TDFRTKHMLVHDVEK 347
F +D R +H +H +K
Sbjct: 71 KFARSDERKRHTKIHLRQK 89
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 235 KPYECYI--CNKILVSRGRLNEHLNQVHLAQR-FECKLCHKTIVSEKTFKKHMALHSDAK 291
+PY C + C++ G L H+ ++H Q+ F+C++C + H+ H+ K
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 292 PFVCNICGKDFKLKYYVNLHMRTHTR 317
PF C+ICG+ F H + H R
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLR 87
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 291 KPFVCNI--CGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFP-TDFRTKHMLVHDVEK 347
+P+ C + C + F + H+R HT +P F+C +C + F +D T H+ H EK
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 348 SHLCFVCGAGFVNDAGLKVHMRKH 371
C +CG F K H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTHM-QKD 137
P +C C + SR D LT HI K + C+ C RKF + K+H H+ QKD
Sbjct: 34 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 195 LEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNE 254
L H + G +P+ C+ C + F++ ++ TH R H KP+ C IC +
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKR 80
Query: 255 HLNQVHLAQR 264
H ++HL Q+
Sbjct: 81 H-TKIHLRQK 89
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 25/98 (25%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSI 140
PVE C + S+ LTRHI +H+G K + C C R F+ L H+ TH +
Sbjct: 8 PVE--SCDRRFSQSGSLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE---- 60
Query: 141 SIDVISEIKKFKCDQCD--YATKDKYNLGTHIKRRHTK 176
K F CD C +A D+ ++RHTK
Sbjct: 61 --------KPFACDICGRKFARSDE-------RKRHTK 83
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 235 KPYECYI--CNKILVSRGRLNEHLNQVHLAQR-FECKLCHKTIVSEKTFKKHMALHSDAK 291
+PY C + C++ + L+ H+ ++H Q+ F+C++C + +H+ H+ K
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHI-RIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 292 PFVCNICGKDFKLKYYVNLHMRTHTR 317
PF C+ICG+ F + + H + H R
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIHLR 87
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 270 CHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQ 329
C + + H+ +H+ KPF C IC ++F +N H+RTHT +P F CD+C +
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP-FACDICGR 70
Query: 330 IFPT-DFRTKHMLVHDVEK 347
F T R +H +H +K
Sbjct: 71 KFATLHTRDRHTKIHLRQK 89
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 291 KPFVCNI--CGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFPT-DFRTKHMLVHDVEK 347
+P+ C + C + F K ++ H+R HT +P F+C +C + F +H+ H EK
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKP-FQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 348 SHLCFVCGAGFVN----DAGLKVHMRK 370
C +CG F D K+H+R+
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIHLRQ 88
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 195 LEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNE 254
L+ H + G +P+ C+ C + F++ + H R H KP+ C IC + + +
Sbjct: 22 LDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRT-HTGEKPFACDICGRKFATLHTRDR 80
Query: 255 HLNQVHLAQR 264
H ++HL Q+
Sbjct: 81 H-TKIHLRQK 89
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 25/98 (25%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSI 140
PVE C + S+K L HI +H+G K + C C R F+ L QH+ TH +
Sbjct: 8 PVE--SCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE---- 60
Query: 141 SIDVISEIKKFKCDQCD--YATKDKYNLGTHIKRRHTK 176
K F CD C +AT H + RHTK
Sbjct: 61 --------KPFACDICGRKFAT-------LHTRDRHTK 83
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTHM-QKD 137
P +C C + S+ L +HI K + C+ C RKF + +H H+ QKD
Sbjct: 34 PFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIHLRQKD 90
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 154 DQCDYATKDKYNLGTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQILTH-GAEPYHCKY 212
+ CD K NL THI R HT + C C + L +H I TH G +P+ C
Sbjct: 10 ESCDRRFSQKTNLDTHI-RIHTGQKPFQCRICMRNFSQHTGLNQH-IRTHTGEKPFACDI 67
Query: 213 CDKTF----TKRMNVKTHERMK 230
C + F T+ + K H R K
Sbjct: 68 CGRKFATLHTRDRHTKIHLRQK 89
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 270 CHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQ 329
C + +H+ +H+ KPF C IC ++F ++ H+RTHT +P F CD+C +
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGR 70
Query: 330 IFP-TDFRTKHMLVHDVEK 347
F +D R +H +H +K
Sbjct: 71 KFARSDERKRHTKIHLRQK 89
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 235 KPYECYI--CNKILVSRGRLNEHLNQVHLAQR-FECKLCHKTIVSEKTFKKHMALHSDAK 291
+PY C + C++ L H+ ++H Q+ F+C++C + H+ H+ K
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 292 PFVCNICGKDFKLKYYVNLHMRTHTR 317
PF C+ICG+ F H + H R
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLR 87
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 291 KPFVCNI--CGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFP-TDFRTKHMLVHDVEK 347
+P+ C + C + F + H+R HT +P F+C +C + F +D T H+ H EK
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 348 SHLCFVCGAGFVNDAGLKVHMRKH 371
C +CG F K H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTHM-QKD 137
P +C C + SR D LT HI K + C+ C RKF + K+H H+ QKD
Sbjct: 34 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 176 KEYSVLCTQCGFGCYTNRELEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHK 235
+ Y+ C + L H + G +P+ C+ C + F++ ++ TH R H K
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEK 61
Query: 236 PYECYICNKILVSRGRLNEHLNQVHLAQR 264
P+ C IC + H ++HL Q+
Sbjct: 62 PFACDICGRKFARSDERKRH-TKIHLRQK 89
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 25/98 (25%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSI 140
PVE C + S LTRHI +H+G K + C C R F+ L H+ TH +
Sbjct: 8 PVE--SCDRRFSDSSNLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE---- 60
Query: 141 SIDVISEIKKFKCDQCD--YATKDKYNLGTHIKRRHTK 176
K F CD C +A D+ ++RHTK
Sbjct: 61 --------KPFACDICGRKFARSDE-------RKRHTK 83
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 154 DQCDYATKDKYNLGTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQILTH-GAEPYHCKY 212
+ CD D NL HI R HT + C C + L H I TH G +P+ C
Sbjct: 10 ESCDRRFSDSSNLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGEKPFACDI 67
Query: 213 CDKTFTKRMNVKTHERM 229
C + F + K H ++
Sbjct: 68 CGRKFARSDERKRHTKI 84
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 270 CHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQ 329
C + +H+ +H+ KPF C IC ++F ++ H+RTHT +P F CD+C +
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGR 70
Query: 330 IFP-TDFRTKHMLVHDVEK 347
F +D R +H +H +K
Sbjct: 71 KFARSDERKRHTKIHLRQK 89
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 235 KPYECYI--CNKILVSRGRLNEHLNQVHLAQR-FECKLCHKTIVSEKTFKKHMALHSDAK 291
+PY C + C++ L H+ ++H Q+ F+C++C + H+ H+ K
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 292 PFVCNICGKDFKLKYYVNLHMRTHTR 317
PF C+ICG+ F H + H R
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLR 87
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 291 KPFVCNI--CGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFP-TDFRTKHMLVHDVEK 347
+P+ C + C + F + H+R HT +P F+C +C + F +D T H+ H EK
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 348 SHLCFVCGAGFVNDAGLKVHMRKH 371
C +CG F K H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTHM-QKD 137
P +C C + SR D LT HI K + C+ C RKF + K+H H+ QKD
Sbjct: 34 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 176 KEYSVLCTQCGFGCYTNRELEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHK 235
+ Y+ C + EL H + G +P+ C+ C + F++ ++ TH R H K
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEK 61
Query: 236 PYECYICNKILVSRGRLNEHLNQVHLAQR 264
P+ C IC + H ++HL Q+
Sbjct: 62 PFACDICGRKFARSDERKRH-TKIHLRQK 89
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 25/98 (25%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSI 140
PVE C + SR +LTRHI +H+G K + C C R F+ L H+ TH +
Sbjct: 8 PVE--SCDRRFSRSAELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE---- 60
Query: 141 SIDVISEIKKFKCDQCD--YATKDKYNLGTHIKRRHTK 176
K F CD C +A D+ ++RHTK
Sbjct: 61 --------KPFACDICGRKFARSDE-------RKRHTK 83
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 41/118 (34%)
Query: 112 PCEQCDRKFTNGYKLKQHMLTHMQKDTSISIDVISEIKKFKCDQCDYATKDKYNLGTHIK 171
P E CDR+F+ +L +H+ H + K F+C C +L THI
Sbjct: 8 PVESCDRRFSRSAELTRHIRIHTGQ------------KPFQCRICMRNFSRSDHLTTHI- 54
Query: 172 RRHTKEYSVLCTQCGFGCYTNRELEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERM 229
R HT G +P+ C C + F + K H ++
Sbjct: 55 RTHT----------------------------GEKPFACDICGRKFARSDERKRHTKI 84
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 270 CHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQ 329
C + +H+ +H+ KPF C IC ++F ++ H+RTHT +P F CD+C +
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGR 70
Query: 330 IFP-TDFRTKHMLVHDVEK 347
F +D R +H +H +K
Sbjct: 71 KFARSDERKRHTKIHLRQK 89
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 235 KPYECYI--CNKILVSRGRLNEHLNQVHLAQR-FECKLCHKTIVSEKTFKKHMALHSDAK 291
+PY C + C++ L H+ ++H Q+ F+C++C + H+ H+ K
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 292 PFVCNICGKDFKLKYYVNLHMRTHTR 317
PF C+ICG+ F H + H R
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLR 87
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 291 KPFVCNI--CGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFP-TDFRTKHMLVHDVEK 347
+P+ C + C + F + H+R HT +P F+C +C + F +D T H+ H EK
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 348 SHLCFVCGAGFVNDAGLKVHMRKH 371
C +CG F K H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTHM-QKD 137
P +C C + SR D LT HI K + C+ C RKF + K+H H+ QKD
Sbjct: 34 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 176 KEYSVLCTQCGFGCYTNRELEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHK 235
+ Y+ C + +L H + G +P+ C+ C + F++ ++ TH R H K
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEK 61
Query: 236 PYECYICNKILVSRGRLNEHLNQVHLAQR 264
P+ C IC + H ++HL Q+
Sbjct: 62 PFACDICGRKFARSDERKRH-TKIHLRQK 89
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 25/98 (25%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSI 140
PVE C + SR LTRHI +H+G K + C C R F+ L H+ TH +
Sbjct: 8 PVE--SCDRRFSRSADLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE---- 60
Query: 141 SIDVISEIKKFKCDQCD--YATKDKYNLGTHIKRRHTK 176
K F CD C +A D+ ++RHTK
Sbjct: 61 --------KPFACDICGRKFARSDE-------RKRHTK 83
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 270 CHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQ 329
C + +H+ +H+ KPF C IC ++F ++ H+RTHT +P F CD+C +
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGR 70
Query: 330 IFP-TDFRTKHMLVHDVEK 347
F +D R +H +H +K
Sbjct: 71 KFARSDERKRHTKIHLRQK 89
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 235 KPYECYI--CNKILVSRGRLNEHLNQVHLAQR-FECKLCHKTIVSEKTFKKHMALHSDAK 291
+PY C + C++ L H+ ++H Q+ F+C++C + H+ H+ K
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 292 PFVCNICGKDFKLKYYVNLHMRTHTR 317
PF C+ICG+ F H + H R
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLR 87
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 291 KPFVCNI--CGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFP-TDFRTKHMLVHDVEK 347
+P+ C + C + F + H+R HT +P F+C +C + F +D T H+ H EK
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 348 SHLCFVCGAGFVNDAGLKVHMRKH 371
C +CG F K H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTHM-QKD 137
P +C C + SR D LT HI K + C+ C RKF + K+H H+ QKD
Sbjct: 34 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQKD 90
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 194 ELEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLN 253
EL H + G +P+ C+ C + F++ ++ TH R H KP+ C IC +
Sbjct: 21 ELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERK 79
Query: 254 EHLNQVHLAQR 264
H ++HL Q+
Sbjct: 80 RH-TKIHLRQK 89
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 25/98 (25%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSI 140
PVE C + SR D+LTRHI +H+G K + C C R F+ L H+ TH +
Sbjct: 8 PVE--SCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE---- 60
Query: 141 SIDVISEIKKFKCDQCD--YATKDKYNLGTHIKRRHTK 176
K F CD C +A D+ ++RHTK
Sbjct: 61 --------KPFACDICGRKFARSDE-------RKRHTK 83
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 270 CHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQ 329
C + +H+ +H+ KPF C IC ++F ++ H+RTHT +P F CD+C +
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGR 69
Query: 330 IFP-TDFRTKHMLVH 343
F +D R +H +H
Sbjct: 70 KFARSDERKRHTKIH 84
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 235 KPYECYI--CNKILVSRGRLNEHLNQVHLAQR-FECKLCHKTIVSEKTFKKHMALHSDAK 291
+PY C + C++ L H+ ++H Q+ F+C++C + H+ H+ K
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 292 PFVCNICGKDFKLKYYVNLHMRTHTR 317
PF C+ICG+ F H + H R
Sbjct: 61 PFACDICGRKFARSDERKRHTKIHLR 86
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 291 KPFVCNI--CGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFP-TDFRTKHMLVHDVEK 347
+P+ C + C + F + H+R HT +P F+C +C + F +D T H+ H EK
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 348 SHLCFVCGAGFVNDAGLKVHMRKH 371
C +CG F K H + H
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTHMQK 136
P +C C + SR D LT HI K + C+ C RKF + K+H H+++
Sbjct: 33 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQ 87
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 25/98 (25%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSI 140
PVE C + SR D+LTRHI +H+G K + C C R F+ L H+ TH +
Sbjct: 7 PVE--SCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE---- 59
Query: 141 SIDVISEIKKFKCDQCD--YATKDKYNLGTHIKRRHTK 176
K F CD C +A D+ ++RHTK
Sbjct: 60 --------KPFACDICGRKFARSDE-------RKRHTK 82
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 194 ELEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLN 253
EL H + G +P+ C+ C + F++ ++ TH R H KP+ C IC +
Sbjct: 20 ELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERK 78
Query: 254 EHLNQVHLAQ 263
H ++HL Q
Sbjct: 79 RH-TKIHLRQ 87
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 270 CHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQ 329
C + +H+ +H+ KPF C IC ++F ++ H+RTHT +P F CD+C +
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGR 70
Query: 330 IFP-TDFRTKHMLVH 343
F +D R +H +H
Sbjct: 71 KFARSDERKRHTKIH 85
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 235 KPYECYI--CNKILVSRGRLNEHLNQVHLAQR-FECKLCHKTIVSEKTFKKHMALHSDAK 291
+PY C + C++ L H+ ++H Q+ F+C++C + H+ H+ K
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 292 PFVCNICGKDFKLKYYVNLHMRTHTR 317
PF C+ICG+ F H + H R
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLR 87
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 291 KPFVCNI--CGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFP-TDFRTKHMLVHDVEK 347
+P+ C + C + F + H+R HT +P F+C +C + F +D T H+ H EK
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 348 SHLCFVCGAGFVNDAGLKVHMRKH 371
C +CG F K H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 26/106 (24%)
Query: 74 HKKPKSRAPVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLT 132
H++P + PVE C + SR D+LTRHI +H+G K + C C R F+ L H+ T
Sbjct: 1 HERPYA-CPVE--SCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Query: 133 HMQKDTSISIDVISEIKKFKCDQCD--YATKDKYNLGTHIKRRHTK 176
H + K F CD C +A D+ ++RHTK
Sbjct: 57 HTGE------------KPFACDICGRKFARSDE-------RKRHTK 83
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTHMQ 135
P +C C + SR D LT HI K + C+ C RKF + K+H H++
Sbjct: 34 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 87
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 174 HTKEYSVLCTQCGFGCYTNRELEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHEN 233
H + Y+ C + EL H + G +P+ C+ C + F++ ++ TH R H
Sbjct: 1 HERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTG 59
Query: 234 HKPYECYICNKILVSRGRLNEHLNQVHL 261
KP+ C IC + H ++HL
Sbjct: 60 EKPFACDICGRKFARSDERKRH-TKIHL 86
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 70/166 (42%), Gaps = 27/166 (16%)
Query: 85 CSY--CGKVLSRKDKLTRHIAAVHSGKEYPC--EQCDRKFTNGYKLKQHMLTHMQKDTSI 140
CS+ CG ++ KL H+ K +PC E C++ FT+ + L +H LTH +
Sbjct: 15 CSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE---- 70
Query: 141 SIDVISEIKKFKCDQ--CDYATKDKYNLGTHIKRRHTKEYSVLC---TQCGFGCYTNREL 195
K F CD CD K N+ H R H + V CG + +L
Sbjct: 71 --------KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQL 122
Query: 196 EEHQILTHGAEPYHCKY--CDKTFTKRMNVKTHERMKHENHKPYEC 239
+ HQ PY C + CDK F+ +K HE++ H Y C
Sbjct: 123 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV----HAGYPC 164
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 58/151 (38%), Gaps = 11/151 (7%)
Query: 176 KEYSVLCTQCGFGCYTNRELEEHQILTHGAEPYHCKY--CDKTFTKRMNVKTHERMKHEN 233
K Y CG N +L+ H G +P+ CK C+K FT ++ H + H
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHS-LTHTG 69
Query: 234 HKPYECYI--CNKILVSRGRLNEHLNQVHLAQ--RFECKL--CHKTIVSEKTFKKHMALH 287
K + C C+ ++ + +H N+ H + + C C K K H H
Sbjct: 70 EKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSH 129
Query: 288 SDAKPFVC--NICGKDFKLKYYVNLHMRTHT 316
+ P+ C C K F L + H + H
Sbjct: 130 TQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 160
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Query: 242 CNKILVSRGRLNEHLNQVHLAQRFECKLCHKTIVSEKTFKKHMALHSDAKPFVCNI--CG 299
C K+ + +HL+ H + C C K V K+H +H+ KPF C CG
Sbjct: 13 CTKMFRDNSAMRKHLH-THGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 300 KDFKLKYYVNLHMRTHTRIRPTFEC--DVCHQIFPTDFRTK-HMLVHDVEKS 348
K F L + + H+R HT RP + C D C++ F K H+L H K+
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRP-YVCPFDGCNKKFAQSTNLKSHILTHAKAKN 122
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 166 LGTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQILTHGAEPYHCKY--CDKTFTKRMNV 223
L TH R H +C +CG + +L+ HQ++ G +P+ C + C K F+ N+
Sbjct: 27 LHTHGPRVH------VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNL 80
Query: 224 KTHERMKHENHKPYECYI--CNKILVSRGRLNEHL 256
+TH R+ H +PY C CNK L H+
Sbjct: 81 RTHVRI-HTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 53/143 (37%), Gaps = 46/143 (32%)
Query: 88 CGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSISIDVISE 147
C K+ + +H+ H + + C +C + F KLK+H L H +
Sbjct: 13 CTKMFRDNSAMRKHLH-THGPRVHVCAECGKAFVESSKLKRHQLVHTGE----------- 60
Query: 148 IKKFKC--DQCDYATKDKYNLGTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQILTHGA 205
K F+C + C +NL TH+ R HT G
Sbjct: 61 -KPFQCTFEGCGKRFSLDFNLRTHV-RIHT----------------------------GD 90
Query: 206 EPYHCKY--CDKTFTKRMNVKTH 226
PY C + C+K F + N+K+H
Sbjct: 91 RPYVCPFDGCNKKFAQSTNLKSH 113
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 85 CSYCGKVLSRKDKLTRHIAAVHSG-KEYPC--EQCDRKFTNGYKLKQHMLTH 133
C+ CGK KL RH VH+G K + C E C ++F+ + L+ H+ H
Sbjct: 37 CAECGKAFVESSKLKRH-QLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIH 87
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 62/143 (43%), Gaps = 26/143 (18%)
Query: 211 KYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHLNQVHLAQRFECKLC 270
K CD+TF+ + TH M+H V N H+ EC
Sbjct: 29 KSCDRTFSTMHELVTHVTMEH---------------VGGPEQNNHVCYWE-----ECPRE 68
Query: 271 HKTIVSEKTFKKHMALHSDAKPFVCNI--CGKDFKLKYYVNLHMRTHTRIRPTFECDV-- 326
K+ ++ H+ +H+ KPF C CGK F + +H RTHT +P F+C+
Sbjct: 69 GKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKP-FKCEFEG 127
Query: 327 CHQIFP-TDFRTKHMLVHDVEKS 348
C + F + R KHM VH +KS
Sbjct: 128 CDRRFANSSDRKKHMHVHTSDKS 150
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 43/121 (35%), Gaps = 33/121 (27%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
ECP GK K KLV+H+R HT P P
Sbjct: 64 ECPREGKSFKAKYKLVNHIR-VHTGEKP------------------------------FP 92
Query: 83 VECSYCGKVLSRKDKLTRHIAAVHSGKEYPCE--QCDRKFTNGYKLKQHMLTHMQKDTSI 140
CGK+ +R + L H K + CE CDR+F N K+HM H +
Sbjct: 93 CPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGP 152
Query: 141 S 141
S
Sbjct: 153 S 153
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 299 GKDFKLKYYVNLHMRTHTRIRPTFECDV--CHQIFPTDFRTK-HMLVHDVEKSHLCFV-- 353
GK FK KY + H+R HT +P F C C +IF K H H EK C
Sbjct: 69 GKSFKAKYKLVNHIRVHTGEKP-FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEG 127
Query: 354 CGAGFVNDAGLKVHMRKH 371
C F N + K HM H
Sbjct: 128 CDRRFANSSDRKKHMHVH 145
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 288 SDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFP-TDFRTKHMLVHD-- 344
S + C ICGK F+ Y++N H +H+ +P + C VC F D + H+ HD
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 345 VEKSHLCFVCGAGFVNDAGLKVHMRK 370
V K ++C CG GF L H+++
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQ 87
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 179 SVLCTQCGFGCYTNRELEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENH--KP 236
V C CG L H++ G +PY C C F ++ + H R H+ KP
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR-SHDGSVGKP 65
Query: 237 YECYICNKILVSRGRLNEHLNQVH 260
Y C C K LN H+ QVH
Sbjct: 66 YICQSCGKGFSRPDHLNGHIKQVH 89
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 267 CKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTH-TRIRPTFECD 325
C++C K +H HS KP+ C +CG FK K ++ H+R+H + + C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 326 VCHQIF 331
C + F
Sbjct: 70 SCGKGF 75
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 30/86 (34%), Gaps = 31/86 (36%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
CPVCG RK ++ H+RS SV P
Sbjct: 37 SCPVCGLRFKRKDRMSYHVRSHDGSVG-------------------------------KP 65
Query: 83 VECSYCGKVLSRKDKLTRHIAAVHSG 108
C CGK SR D L HI VHSG
Sbjct: 66 YICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 239 CYICNKILVSRGRLNEHLNQVHLAQRFECKLCHKTIVSEKTFKKHMALH--SDAKPFVCN 296
C IC KI LN H + + C +C + H+ H S KP++C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 297 ICGKDFKLKYYVNLHMR 313
CGK F ++N H++
Sbjct: 70 SCGKGFSRPDHLNGHIK 86
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 10/97 (10%)
Query: 83 VECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSISI 142
V C CGK+ L RH + K Y C C +F ++ H+ +H D S+
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH---DGSVG- 63
Query: 143 DVISEIKKFKCDQCDYATKDKYNLGTHIKRRHTKEYS 179
K + C C +L HIK+ H+ S
Sbjct: 64 ------KPYICQSCGKGFSRPDHLNGHIKQVHSGPSS 94
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHS--GKEYPCEQCDRKFTNGYKLKQHM 130
P C CG RKD+++ H+ + GK Y C+ C + F+ L H+
Sbjct: 35 PYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHI 85
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 324 CDVCHQIFPTDFR-TKHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
C++C +IF + +H L H EK + C VCG F + H+R H
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 293 FVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFP-TDFRTKHMLVHDVEKSHLC 351
++C +C + + + H H+ + C C ++FP ++RTKH + H E+ + C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHS-WEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQC 81
Query: 352 FVCGAGFVNDAGLKVHMR 369
CG F+N + H++
Sbjct: 82 LACGKSFINYQFMSSHIK 99
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 218 TKRMNVK--THERMKHENHKPYECYICNKILVSRGRLNEHLNQVHLAQRFECKLCHKTIV 275
KRM VK H + + Y C +C + V L H N +++ C+ C K
Sbjct: 2 NKRMKVKHDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFP 61
Query: 276 SEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRT 314
+ KH H+ + + C CGK F +++ H+++
Sbjct: 62 LAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKS 100
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 181 LCTQC--GFGCYTNRELEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYE 238
+C C + C T+ L H + + Y C+YC+K F +T + H + Y+
Sbjct: 24 ICIVCKRSYVCLTS--LRRHFNIHSWEKKYPCRYCEKVFPL-AEYRTKHEIHHTGERRYQ 80
Query: 239 CYICNKILVSRGRLNEHLNQVH 260
C C K ++ ++ H+ VH
Sbjct: 81 CLACGKSFINYQFMSSHIKSVH 102
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 30/120 (25%)
Query: 207 PYHCKY--CDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHLNQVHLAQR 264
P+ C Y C+K + K +++ H R KH KPY+C
Sbjct: 6 PFMCAYPGCNKRYFKLSHLQMHSR-KHTGEKPYQC------------------------- 39
Query: 265 FECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ K C + K+H H+ KPF C C + F ++ H RTHT +P F C
Sbjct: 40 -DFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKP-FSC 97
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 172 RRHTKEYSVLC--TQCGFGCYTNRELEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERM 229
R+HT E C C + +L+ HQ G +P+ CK C + F++ ++KTH R
Sbjct: 29 RKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT 88
Query: 230 KHENHKPYECYI--CNKILVSRGRLNEHLN 257
H KP+ C C K L H N
Sbjct: 89 -HTGEKPFSCRWPSCQKKFARSDELVRHHN 117
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 70 LMLDHKKPKSRAPVECSY--CGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLK 127
L + +K P +C + C + SR D+L RH K + C+ C RKF+ LK
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLK 83
Query: 128 QHMLTHMQKDTSISIDVISEIKKF 151
H TH + S S KKF
Sbjct: 84 THTRTHT-GEKPFSCRWPSCQKKF 106
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 195 LEEHQILTHGAEPYHCKY--CDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRL 252
L+ H G +PY C + C++ F++ +K H+R +H KP++C C + L
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR-RHTGVKPFQCKTCQRKFSRSDHL 82
Query: 253 NEHLNQVHLAQRFECKL--CHKTIVSEKTFKKHMALH 287
H + F C+ C K +H +H
Sbjct: 83 KTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 288 SDAKPFVCNICG---KDFKLKYYVNLHMRTHTRIRPTFECDV--CHQIFP-TDFRTKHML 341
S+ +PF+C G + FKL + + +H R HT +P ++CD C + F +D +H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSH-LQMHSRKHTGEKP-YQCDFKDCERRFSRSDQLKRHQR 59
Query: 342 VHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
H K C C F LK H R H
Sbjct: 60 RHTGVKPFQCKTCQRKFSRSDHLKTHTRTH 89
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 288 SDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
S KP+ C+ CGK F+ K Y+ +HMRTHT +P+
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKPS 39
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 263 QRFECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
+R++C C K+ KH H+ KP+ C+ CGK F + ++ H R HT P+
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 208 YHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHLNQVHLA 262
Y C C K+F+ ++ H R H KPY+C C K + R L H ++VH
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRT-HTGEKPYKCDECGKAFIQRSHLIGH-HRVHTG 71
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 289 DAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFPTDFRTKHMLVH 343
+ + + C+ CGK F ++ H RTHT +P ++CD C + F + H++ H
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGKAF---IQRSHLIGH 65
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 317 RIRPTFECDVCHQIFP--TDFRTKHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
R R ++CD C + F +D +KH H EK + C CG F+ + L H R H
Sbjct: 14 RERRRYKCDECGKSFSHSSDL-SKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 182 CTQCGFGCYTNRELEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERM 229
C +CG + +L +H+ G +PY C C K F +R ++ H R+
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV 68
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 147 EIKKFKCDQCDYATKDKYNLGTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQILTHGAE 206
E +++KCD+C + +L H +R HT E C +CG L H + G+
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSG 73
Query: 207 P 207
P
Sbjct: 74 P 74
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 24/62 (38%)
Query: 78 KSRAPVECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTHMQKD 137
+ R +C CGK S L++H K Y C++C + F L H H
Sbjct: 14 RERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSG 73
Query: 138 TS 139
S
Sbjct: 74 PS 75
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFP-TDFRTKH 339
KPF C IC ++F ++ H+RTHT +P F CD+C + F +D R +H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRH 50
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 265 FECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDF 302
F+C++C + H+ H+ KPF C+ICG+ F
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQH 129
P +C C + SR D LT HI K + C+ C RKF + K+H
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 207 PYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHLNQVHLAQRFE 266
P+ C+ C + F++ ++ TH R H KP+ C IC + H + H+ E
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHRDIQHILPILE 61
Query: 267 CKL 269
K+
Sbjct: 62 DKV 64
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 322 FECDVCHQIFP-TDFRTKHMLVHDVEKSHLCFVCGAGFVNDAGLKVH 367
F+C +C + F +D T H+ H EK C +CG F K H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Query: 295 CNICGKDFKLKYYVNLHMRTHTRIRPTFECDVC 327
C+ CGK F+ YY+N+H+RTHT +P ++C+ C
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKP-YKCEFC 38
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
Query: 113 CEQCDRKFTNGYKLKQHMLTHMQKDTSISIDVISEIKKFKCDQCDYATKDKYNLGTHIKR 172
C C + F + Y L H+ TH + K +KC+ C+YA K +L H++R
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGE------------KPYKCEFCEYAAAQKTSLRYHLER 54
Query: 173 RH 174
H
Sbjct: 55 HH 56
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 204 GAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHLNQVH 260
G+ C YC K F + H R H KPY+C C + L HL + H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRT-HTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 21/50 (42%)
Query: 84 ECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTH 133
ECSYCGK L H+ K Y CE C+ L+ H+ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 265 FECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRP 320
++C C + + H +H+ KP+ CNICG F + H R H+ +P
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 322 FECDVCHQIFPTDFR-TKHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
++CD C F H VH EK + C +CGA F A LK H R H
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 182 CTQCGFGCYTNRELEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKP 236
C +C L H+ + G +PY C C F + N+KTH R+ H KP
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI-HSGEKP 73
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 206 EPYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHLNQVHLAQR 264
+PY C C +F + N+ +H+ + H KPY C IC L H ++H ++
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTV-HTGEKPYRCNICGAQFNRPANLKTHT-RIHSGEK 72
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 149 KKFKCDQCDYATKDKYNLGTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQILTHGAEP 207
K +KCD+C + + K NL +H K HT E C CG L+ H + G +P
Sbjct: 16 KPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 242 CNKILVSRGRLNEHLNQVHLAQR-FECK--LCHKTIVSEKTFKKHMALHSDAKPFVCNIC 298
C +I +R LN H H+ Q+ F C C K+ +K K+HM LHSD + ++C
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Query: 299 G 299
G
Sbjct: 75 G 75
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 71 MLDHKKPKSRA---PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKL 126
+L++ PK R PVE C + SR D+LTRHI +H+G K + C C R F+ L
Sbjct: 9 LLNYVVPKMRPYACPVES--CDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHL 65
Query: 127 KQHMLTH 133
H+ TH
Sbjct: 66 TTHIRTH 72
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 252 LNEHLNQVHLAQR-FECKL--CHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYV 308
+N LN V R + C + C + +H+ +H+ KPF C IC ++F ++
Sbjct: 6 MNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHL 65
Query: 309 NLHMRTHT 316
H+RTHT
Sbjct: 66 TTHIRTHT 73
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 206 EPYHC--KYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHL 256
PY C + CD+ F++ + H R+ H KP++C IC + L H+
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHI 69
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 29/110 (26%)
Query: 208 YHCKY--CDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHLNQVHLAQRF 265
++C Y C K +TK ++K H R H KPY+C
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRT-HTGEKPYKCTW------------------------ 50
Query: 266 ECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTH 315
+ C +H H+ AKPF C +C + F ++ LHM+ H
Sbjct: 51 --EGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 298 CGKDFKLKYYVNLHMRTHTRIRP---TFE-CDVCHQIFPTDFRTKHMLVHDVEKSHLCFV 353
C K + ++ H+RTHT +P T+E CD + +D T+H H K C V
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDW--RFARSDELTRHYRKHTGAKPFQCGV 80
Query: 354 CGAGFVNDAGLKVHMRKHQ 372
C F L +HM++HQ
Sbjct: 81 CNRSFSRSDHLALHMKRHQ 99
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 190 YTNRELEEHQILTH-GAEPYHCKY--CDKTFTKRMNVKTHERMKHENHKPYECYICNKIL 246
YT + + TH G +PY C + CD F + + H R KH KP++C +CN+
Sbjct: 27 YTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR-KHTGAKPFQCGVCNRSF 85
Query: 247 VSRGRLNEHLNQ 258
L H+ +
Sbjct: 86 SRSDHLALHMKR 97
Score = 34.7 bits (78), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 147 EIKKFKCDQCDYATKDK-YNLGTHIK---RRHTKEYSVLCTQ--CGFGCYTNRELEEHQI 200
+++K + CDY K Y +H+K R HT E CT C + + EL H
Sbjct: 9 DLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR 68
Query: 201 LTHGAEPYHCKYCDKTFTKRMNVKTHERMKHEN 233
GA+P+ C C+++F++ ++ H + +H+N
Sbjct: 69 KHTGAKPFQCGVCNRSFSRSDHLALHMK-RHQN 100
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 82 PVECSY--CGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTHMQ 135
P +C++ C +R D+LTRH K + C C+R F+ L HM H
Sbjct: 45 PYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 25 PVCGKVLSRKSKLVSHMRSFHTSVTP-EAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAPV 83
P C KV ++ S L +H+R+ HT P + + D S T H K P
Sbjct: 21 PGCTKVYTKSSHLKAHLRT-HTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAK---PF 76
Query: 84 ECSYCGKVLSRKDKLTRHI 102
+C C + SR D L H+
Sbjct: 77 QCGVCNRSFSRSDHLALHM 95
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 16/92 (17%)
Query: 85 CSY--CGKVLSRKDKLTRHIAAVHSGKEYPC--EQCDRKFTNGYKLKQHMLTHMQKDTSI 140
C Y C KV ++ L H+ K Y C E CD +F +L +H H
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH------- 70
Query: 141 SIDVISEIKKFKCDQCDYATKDKYNLGTHIKR 172
+ K F+C C+ + +L H+KR
Sbjct: 71 -----TGAKPFQCGVCNRSFSRSDHLALHMKR 97
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 210 CKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHLNQVH 260
C+ C + F ++ ++K H R H N KPY C +CN+ R L H ++H
Sbjct: 5 CEVCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 85 CSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTHMQK 136
C C + +R++ L RH + + K YPC C+R FT + ++ H QK
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTR----RDLLIRHAQK 52
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 265 FECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDF 302
F C++C + ++ K+H H++ KP+ C +C + F
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAF 40
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 293 FVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFPTDFRTKHMLVHDVEKSH 349
FVC +C + F + ++ H R+HT +P + C +C++ F + +L+ +K H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAFT----RRDLLIRHAQKIH 54
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG 108
P C C + +R+D L RH +HSG
Sbjct: 30 PYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 18/96 (18%)
Query: 85 CSY--CGKVLSRKDKLTRHIAAVHSGKEYPC--EQCDRKFTNGYKLKQHMLTHMQKDTSI 140
CS+ CG ++ KL H++ K +PC E C++ FT+ + L +H LTH +
Sbjct: 6 CSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE---- 61
Query: 141 SIDVISEIKKFKCDQ--CDYATKDKYNLGTHIKRRH 174
K F CD CD K N+ H R H
Sbjct: 62 --------KNFTCDSDGCDLRFTTKANMKKHFNRFH 89
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 176 KEYSVLCTQCGFGCYTNRELEEHQILTHGAEPYHCKY--CDKTFTKRMNVKTHERMKHEN 233
K Y CG N +L+ H G +P+ CK C+K FT ++ H + H
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHS-LTHTG 60
Query: 234 HKPYECYI--CNKILVSRGRLNEHLNQVH 260
K + C C+ ++ + +H N+ H
Sbjct: 61 EKNFTCDSDGCDLRFTTKANMKKHFNRFH 89
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 291 KPFVCNI--CGKDFKLKYYVNLHMRTHTRIRPTFEC--DVCHQIFPT-DFRTKHMLVHDV 345
K ++C+ CG + + + H+ HT +P F C + C + F + T+H L H
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKP-FPCKEEGCEKGFTSLHHLTRHSLTHTG 60
Query: 346 EKSHLCFV--CGAGFVNDAGLKVHMRK 370
EK+ C C F A +K H +
Sbjct: 61 EKNFTCDSDGCDLRFTTKANMKKHFNR 87
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHT 316
KP+VCN CGK F+ K Y+ +H RTHT
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHT 36
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 105 VHSG-KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSISIDVISEIKKFKCDQCDYATKDK 163
HSG K Y C C +FT +K H+L QK T + KF C CD K
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHIL---QKHTE-------NVAKFHCPHCDTVIARK 58
Query: 164 YNLGTHIKRRHT 175
+LG H++++H+
Sbjct: 59 SDLGVHLRKQHS 70
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 231 HENHKPYECYICNKILVSRGRLNEHLNQVHL--AQRFECKLCHKTIVSEKTFKKHM-ALH 287
H KPYECYIC+ G + H+ Q H +F C C I + H+ H
Sbjct: 10 HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Query: 288 SDAKP 292
S + P
Sbjct: 70 SYSGP 74
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 204 GAEPYHCKYCDKTFTKRMNVKTHERMKH-ENHKPYECYICNKILVSRGRLNEHLNQVH 260
G +PY C C FT+ +K H KH EN + C C+ ++ + L HL + H
Sbjct: 12 GEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 21 KVECPVCGKVLSRKSKLVSHMRSFHTSVTPEAG 53
K CP C V++RKS L H+R H+ P +G
Sbjct: 45 KFHCPHCDTVIARKSDLGVHLRKQHSYSGPSSG 77
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTR 317
KP+ CN+CGK F L ++N H+R HT+
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQ 37
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 235 KPYECYICNKILVSRGRLNEHL 256
KPY C +C K V LN+HL
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHL 32
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 161 KDKYNLGTHIKRRHTKEYSVLCTQCG-FGCYTNRELEEHQILTH-GAEPYHCKY--CDKT 216
K +Y L H+ RRHT E CT G Y+ E + + +H G +PY C++ C K
Sbjct: 50 KAQYMLVVHM-RRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKA 108
Query: 217 FTKRMNVKTHERMKHENHKPYECYI--CNKILVSRGRLNEHLNQVH 260
F+ + H+ H N KPY C + C K L +H+ VH
Sbjct: 109 FSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 34.7 bits (78), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 15/97 (15%)
Query: 286 LHSDAKPFVCNICG-----KDFKLKYYVNLHMRTHTRIRP---TFECDVCHQIFP--TDF 335
+H + K FVC+ G + FK +Y + +HMR HT +P TFE C + + +
Sbjct: 28 IHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFE--GCRKSYSRLENL 85
Query: 336 RTKHMLVHDVEKSHLC--FVCGAGFVNDAGLKVHMRK 370
+T H+ H EK ++C C F N + H +
Sbjct: 86 KT-HLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNR 121
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 32/100 (32%)
Query: 204 GAEPYHCKY--CDKTFTKRMNVKTHERMKHENHKPYECY--ICNKILVSRGRLNEHLNQV 259
G +P+ C + C K++++ N+KTH R H KPY C C+K + +H N+
Sbjct: 64 GEKPHKCTFEGCRKSYSRLENLKTHLR-SHTGEKPYMCEHEGCSKAFSNASDRAKHQNRT 122
Query: 260 HLAQRFECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICG 299
H S+ KP+VC + G
Sbjct: 123 H---------------------------SNEKPYVCKLPG 135
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 65 QIQTMLMLDHKKPKSRAPVECSY--CGKVLSRKDKLTRHIAAVHSGKEYPCEQ--CDRKF 120
+ Q ML++ ++ P +C++ C K SR + L H+ + K Y CE C + F
Sbjct: 50 KAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAF 109
Query: 121 TNGYKLKQHM 130
+N +H
Sbjct: 110 SNASDRAKHQ 119
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KP+ C+ CGK F K Y+ +HMRTH+ +P+
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKPS 41
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 288 SDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
S KP+ CN CGKDF K Y+ +H R HT
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHT 34
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 82 PVECSY--CGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTHM 134
P C + CG +R D+LTRH + + C++CDR F+ L HM H
Sbjct: 35 PYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRHF 89
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 298 CGKDFKLKYYVNLHMRTHTRIRPTFECDV--CHQIFP-TDFRTKHMLVHDVEKSHLCFVC 354
CGK + ++ H+RTHT +P + CD C F +D T+H H + C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKP-YHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 71
Query: 355 GAGFVNDAGLKVHMRKH 371
F L +HM++H
Sbjct: 72 DRAFSRSDHLALHMKRH 88
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 190 YTNRELEEHQILTH-GAEPYHCKY--CDKTFTKRMNVKTHERMKHENHKPYECYICNKIL 246
YT + + TH G +PYHC + C F + + H R KH H+P++C C++
Sbjct: 17 YTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTGHRPFQCQKCDRAF 75
Query: 247 VSRGRLNEHLNQ 258
L H+ +
Sbjct: 76 SRSDHLALHMKR 87
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 36/103 (34%), Gaps = 27/103 (26%)
Query: 213 CDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHLNQVHLAQRFECKLCHK 272
C KT+TK ++K H R H KPY C + C
Sbjct: 13 CGKTYTKSSHLKAHLRT-HTGEKPYHC--------------------------DWDGCGW 45
Query: 273 TIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTH 315
+H H+ +PF C C + F ++ LHM+ H
Sbjct: 46 KFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 156 CDYATKDK-YNLGTHIK---RRHTKEYSVLCTQ--CGFGCYTNRELEEHQILTHGAEPYH 209
CDYA K Y +H+K R HT E C CG+ + EL H G P+
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 210 CKYCDKTFTKRMNVKTH 226
C+ CD+ F++ ++ H
Sbjct: 68 CQKCDRAFSRSDHLALH 84
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 27 CGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAPVECS 86
CGK ++ S L +H+R+ HT P + D G L ++K P +C
Sbjct: 13 CGKTYTKSSHLKAHLRT-HTGEKPYHC--DWDGCGWKFARSDELTRHYRKHTGHRPFQCQ 69
Query: 87 YCGKVLSRKDKLTRHI 102
C + SR D L H+
Sbjct: 70 KCDRAFSRSDHLALHM 85
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 16/99 (16%)
Query: 78 KSRAPVECSY--CGKVLSRKDKLTRHIAAVHSGKEYPCEQ--CDRKFTNGYKLKQHMLTH 133
K A C Y CGK ++ L H+ K Y C+ C KF +L +H H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 134 MQKDTSISIDVISEIKKFKCDQCDYATKDKYNLGTHIKR 172
+ + F+C +CD A +L H+KR
Sbjct: 61 ------------TGHRPFQCQKCDRAFSRSDHLALHMKR 87
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 82 PVECSY--CGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTHM 134
P C + CG +R D+LTRH + + C++CDR F+ L HM H
Sbjct: 36 PYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRHF 90
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 190 YTNRELEEHQILTH-GAEPYHCKY--CDKTFTKRMNVKTHERMKHENHKPYECYICNKIL 246
YT + + TH G +PYHC + C F + + H R KH H+P++C C++
Sbjct: 18 YTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTGHRPFQCQKCDRAF 76
Query: 247 VSRGRLNEHLNQ 258
L H+ +
Sbjct: 77 SRSDHLALHMKR 88
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 298 CGKDFKLKYYVNLHMRTHTRIRPTFECDV--CHQIFP-TDFRTKHMLVHDVEKSHLCFVC 354
CGK + ++ H+RTHT +P + CD C F +D T+H H + C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKP-YHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 72
Query: 355 GAGFVNDAGLKVHMRKH 371
F L +HM++H
Sbjct: 73 DRAFSRSDHLALHMKRH 89
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 36/103 (34%), Gaps = 27/103 (26%)
Query: 213 CDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHLNQVHLAQRFECKLCHK 272
C KT+TK ++K H R H KPY C + C
Sbjct: 14 CGKTYTKSSHLKAHLRT-HTGEKPYHC--------------------------DWDGCGW 46
Query: 273 TIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTH 315
+H H+ +PF C C + F ++ LHM+ H
Sbjct: 47 KFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 156 CDYATKDK-YNLGTHIK---RRHTKEYSVLCTQ--CGFGCYTNRELEEHQILTHGAEPYH 209
CDYA K Y +H+K R HT E C CG+ + EL H G P+
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 210 CKYCDKTFTKRMNVKTH 226
C+ CD+ F++ ++ H
Sbjct: 69 CQKCDRAFSRSDHLALH 85
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 27 CGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAPVECS 86
CGK ++ S L +H+R+ HT P + D G L ++K P +C
Sbjct: 14 CGKTYTKSSHLKAHLRT-HTGEKPYHC--DWDGCGWKFARSDELTRHYRKHTGHRPFQCQ 70
Query: 87 YCGKVLSRKDKLTRHI 102
C + SR D L H+
Sbjct: 71 KCDRAFSRSDHLALHM 86
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 16/96 (16%)
Query: 81 APVECSY--CGKVLSRKDKLTRHIAAVHSGKEYPCEQ--CDRKFTNGYKLKQHMLTHMQK 136
A C Y CGK ++ L H+ K Y C+ C KF +L +H H
Sbjct: 5 ATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH--- 61
Query: 137 DTSISIDVISEIKKFKCDQCDYATKDKYNLGTHIKR 172
+ + F+C +CD A +L H+KR
Sbjct: 62 ---------TGHRPFQCQKCDRAFSRSDHLALHMKR 88
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KP+ CN CGK F K ++ H RTHT +P+
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKPS 41
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 207 PYHCKYCDKTFTKRMNVKTHERMKHENHKP 236
PY C C KTF+++ + H+R H KP
Sbjct: 12 PYGCNECGKTFSQKSILSAHQRT-HTGEKP 40
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KP++CN CGK F K ++N H R HT +P+
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKPS 41
>pdb|1V9F|A Chain A, Crystal Structure Of Catalytic Domain Of Pseudouridine
Synthase Rlud From Escherichia Coli
pdb|2IST|A Chain A, Crystal Structure Of Rlud From E. Coli
Length = 325
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 18/101 (17%)
Query: 239 CYICNKILVSRGRLNEHLNQVHLAQRFEC-KLCHKT--------IVSEKTFKKHMALHSD 289
+ K + ++ RL E L + + + +E + H T I T + HMA+H
Sbjct: 144 LMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVHPM 203
Query: 290 AKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQI 330
KP V + Y + H R HTR+R E HQI
Sbjct: 204 GKPAVTH---------YRIMEHFRVHTRLRLRLETGRTHQI 235
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 35.8 bits (81), Expect = 0.037, Method: Composition-based stats.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 288 SDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
S KP+VCN CGK F LK + +H R HT
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHT 34
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 35.8 bits (81), Expect = 0.037, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 239 CYICNKILVSRGRLNEHLNQVHLAQRFECKLCHKTIVSEKTFKKHM 284
C +C + S+G HL +H AQ F CK C T S +H+
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
Score = 33.5 bits (75), Expect = 0.18, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 85 CSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHM 130
C CG+ + K RH+ +H+ + +PC+ C F + L +H+
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
Score = 31.6 bits (70), Expect = 0.74, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 181 LCTQCGFGCYTNRELEEHQILTHGAEPYHCKYCDKTFTKRMNVKTH 226
LC CG + E H L H A+ + CKYC TF + H
Sbjct: 30 LCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRH 75
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 288 SDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
S KP+ CN CGK F K + +H HT ++P+
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKPS 39
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTS 139
P C CGK SR L +H VH+G K Y C +C + F+ L H H +S
Sbjct: 14 PYGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 206 EPYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEH 255
+PY C C K F++ + H+R+ H KPY+C C K L H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRV-HTGEKPYKCLECGKAFSQNSGLINH 61
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 182 CTQCGFGCYTNRELEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERM 229
C +CG + L +HQ + G +PY C C K F++ + H+R+
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI 64
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 265 FECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
+ C C K +H +H+ KP+ C CGK F + H R HT
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 322 FECDVCHQIFP-TDFRTKHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
+ C C + F + +H VH EK + C CG F ++GL H R H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
>pdb|1PRZ|A Chain A, Crystal Structure Of Pseudouridine Synthase Rlud Catalytic
Module
Length = 252
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 18/113 (15%)
Query: 241 ICNKILVSRGRLNEHLNQVHLAQRFEC-KLCHKT--------IVSEKTFKKHMALHSDAK 291
+ K + ++ RL E L + + + +E + H T I T + H A+H K
Sbjct: 73 VVAKTVPAQTRLVESLQRREITREYEAVAIGHXTAGGTVDEPISRHPTKRTHXAVHPXGK 132
Query: 292 PFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFPTDFRTKHMLVHD 344
P V + Y + H R HTR+R E HQI H LV D
Sbjct: 133 PAVTH---------YRIXEHFRVHTRLRLRLETGRTHQIRVHXAHITHPLVGD 176
>pdb|1QYU|A Chain A, Structure Of The Catalytic Domain Of 23s Rrna
Pseudouridine Synthase Rlud
Length = 349
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 18/113 (15%)
Query: 241 ICNKILVSRGRLNEHLNQVHLAQRFEC-KLCHKT--------IVSEKTFKKHMALHSDAK 291
+ K + ++ RL E L + + + +E + H T I T + H A+H K
Sbjct: 170 VVAKTVPAQTRLVESLQRREITREYEAVAIGHXTAGGTVDEPISRHPTKRTHXAVHPMGK 229
Query: 292 PFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFPTDFRTKHMLVHD 344
P V + Y + H R HTR+R E HQI H LV D
Sbjct: 230 PAVTH---------YRIXEHFRVHTRLRLRLETGRTHQIRVHXAHITHPLVGD 273
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 265 FECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTH 315
F C C KT +H H +P C CGK F+ + VN H++ H
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFPTDFR-TKHMLVH 343
+PF CN CGK ++ ++ H R H RP C C + F +H+ VH
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPR-SCPECGKCFRDQSEVNRHLKVH 55
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 207 PYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHL 256
P+ C +C KT+ + H R H ++P C C K + +N HL
Sbjct: 4 PFFCNFCGKTYRDASGLSRHRRA-HLGYRPRSCPECGKCFRDQSEVNRHL 52
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 79 SRAPVECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTHMQKDT 138
S P C++CGK L+RH A + C +C + F + ++ +H+ H K
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKPA 60
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KP+ C+ C K F LK + +H R+HT ++P+
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKPS 41
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KP+ C+ CGK F Y + H THTR +P+
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKPS 41
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 109 KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTS 139
K Y C +C + F+ Y+L QH +TH ++ S
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKPS 41
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSGKEYP 112
P EC CGKV SRKD+L H HSG+ P
Sbjct: 12 PYECCECGKVFSRKDQLVSH-QKTHSGQSGP 41
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAG 53
EC CGKV SRK +LVSH ++ P +G
Sbjct: 14 ECCECGKVFSRKDQLVSHQKTHSGQSGPSSG 44
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 288 SDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
S KP VCN CGK F+ ++ H R H+ +P+
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKPS 39
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KP+ CN CGK F+ Y++ H R HT +P+
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKPS 41
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KP+ C+ICGK F K +++H + HT +P+
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKPS 41
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 207 PYHCKYCDKTFTKRMNVKTHERMKHENHKP 236
PY C C K+FTK+ + H+++ H KP
Sbjct: 12 PYECSICGKSFTKKSQLHVHQQI-HTGEKP 40
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 235 KPYECYICNKILVSRGRLNEHLNQVHLAQR 264
KPYEC IC K + +L+ H Q+H ++
Sbjct: 11 KPYECSICGKSFTKKSQLHVH-QQIHTGEK 39
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KP+VC+ CGK F L + H R HT +P+
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKPS 41
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KP+ C CGK + K+ +++H + HT RP+
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERPS 41
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 33.9 bits (76), Expect = 0.15, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 202 THGAEPYHCKYCDKTFTKRMNVKTHERM 229
+ G +PY CK C K+F++R ++ HER+
Sbjct: 5 SSGEKPYQCKECGKSFSQRGSLAVHERL 32
Score = 28.5 bits (62), Expect = 5.9, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 288 SDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
S KP+ C CGK F + + +H R HT P+
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGPS 39
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 146 SEIKKFKCDQCDYATKDKYNLGTHIKRRHTKE 177
S K FKC C+YAT+ K NL H+ R T++
Sbjct: 5 SSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 149 KKFKCDQCDYATKDKYNLGTHIKRRHTKE 177
K ++C C+Y + D NL THIK +H+KE
Sbjct: 1 KTYQCQYCEYRSADSSNLKTHIKTKHSKE 29
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 33.5 bits (75), Expect = 0.20, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 288 SDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
S KP+ C CGK F LK + +H RTHT
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHT 34
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 204 GAEPYHCKYCDKTFTKRMNVKTHERMKHE-NHKP--YECYICNKILVSRGRLNEHLNQ 258
G +PY C +CDKTF ++ + H + H+ N P + C C K R + H +
Sbjct: 12 GEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN 69
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 231 HENHKPYECYICNKILVSRGRLNEHLNQVH----LAQRFECKLCHKTIVSEKTFKKHM 284
H KPY C C+K + L+ H + H + F C C KT T +H
Sbjct: 10 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 287 HSDAKPFVCNICGKDFKLKYYVNLHMRTH---TRIRPTFECDVCHQIF 331
H+ KP+ C+ C K F+ K +++H + + + F C C + F
Sbjct: 10 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTF 57
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 146 SEIKKFKCDQCDYATKDKYNLGTHIKRRHTKE 177
S K +KC QC YA+ K NL H+ R+HT E
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHL-RKHTGE 35
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHT 316
+P+ C++CGK F LK+ + H R HT
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHT 27
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KP+ C++CGK F + +++H R H+ +P+
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKPS 41
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 206 EPYHCKYCDKTFTKRMNVKTHERMKHENHKP 236
+PY C C K F+ R ++ H+R+ H KP
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRI-HSGKKP 40
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSGKE 110
P ECS CGK S + L+ H +HSGK+
Sbjct: 12 PYECSVCGKAFSHRQSLSVH-QRIHSGKK 39
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KP+ C+ CGK F ++N H R HT RP+
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRPS 41
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KPF C+ICGK F + +N H HT +P+
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKPS 41
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 235 KPYECYICNKILVSRGRLNEHLNQVHLAQR 264
KP++C IC K R RLN H + VH A++
Sbjct: 11 KPFKCDICGKSFCGRSRLNRH-SMVHTAEK 39
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KP+ CN CGK F ++ H R HT ++P+
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKPS 41
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KPF C CGK F+ ++ H+R HT +P+
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKPS 41
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KPF C CGK + + ++ H R HT +P+
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKPS 41
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KP+ C +C K F K ++ H +THT +P+
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKPS 41
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 207 PYHCKYCDKTFTKRMNVKTHERMKHENHKP 236
PY CK C K FT++ ++ H++ H KP
Sbjct: 12 PYECKVCSKAFTQKAHLAQHQKT-HTGEKP 40
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 32.7 bits (73), Expect = 0.37, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSGKEYP 112
P ECS CGK +RKD+L H H+G+ P
Sbjct: 10 PYECSECGKAFNRKDQLISH-QRTHAGESGP 39
Score = 32.0 bits (71), Expect = 0.58, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAG 53
EC CGK +RK +L+SH R+ P +G
Sbjct: 12 ECSECGKAFNRKDQLISHQRTHAGESGPSSG 42
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 292 PFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
P+ C+ CGK F KY + H RTH +P+
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAGEKPS 41
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 23 ECPVCGKVLSRKSKLVSHMRS 43
EC CGK SRK +L+SH R+
Sbjct: 14 ECHECGKAFSRKYQLISHQRT 34
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KPF C CGK F +++ H R HT +P+
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKPS 41
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KP+ CN CGK F ++ + H HT +P+
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKPS 41
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSGKE 110
P EC+ CGK S + LT H A+H+GK+
Sbjct: 12 PYECNQCGKAFSVRSSLTTH-QAIHTGKK 39
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 206 EPYHCKYCDKTFTKRMNVKTHERMKHENHKP 236
+PY C C K F+ R ++ TH+ + H KP
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAI-HTGKKP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KPF C+ C K F K + +H RTHT +P+
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKPS 41
>pdb|1KLR|A Chain A, Nmr Structure Of The Zfy-6t[y10f] Zinc Finger
Length = 30
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 149 KKFKCDQCDYATKDKYNLGTHIKRRHTKE 177
K ++C C++ + D NL THIK +H+KE
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE 29
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 288 SDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
S KP+VC CGK F +++H R HT
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHT 34
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KPF C CGK F + +N+H + HT +P+
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKPS 41
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KP+ C CGK F K + H R HT +P+
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKPS 41
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 207 PYHCKYCDKTFTKRMNVKTHERMKHENHKP 236
PY C C K F ++ N+ H+R+ H KP
Sbjct: 12 PYRCGECGKAFAQKANLTQHQRI-HTGEKP 40
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KP+ C+ CGK F K + +H+R HT P+
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 24 CPVCGKVLSRKSKLVSHMRSFHTSVTPEAG 53
C CGK S+K L+ H+R HT P +G
Sbjct: 14 CDQCGKAFSQKGSLIVHIR-VHTGSGPSSG 42
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 206 EPYHCKYCDKTFTKRMNVKTHERMKHENHKP 236
+PY C C K FT R N+ TH+++ H KP
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKI-HTGEKP 40
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
K C+ CG+ F LK ++N H R HT +P+
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKPS 41
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KP+ CN CGK F + H R HT +P+
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKPS 41
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSGKE 110
P +C+ CGK S+ KL RH VH+G++
Sbjct: 12 PYQCNECGKAFSQTSKLARH-QRVHTGEK 39
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 206 EPYHCKYCDKTFTKRMNVKTHERMKHENHKP 236
+P+ C CDK+F +R + +H RM H KP
Sbjct: 11 KPFRCDTCDKSFRQRSALNSH-RMIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KPF C+ C K F+ + +N H HT +P+
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEKPS 41
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 293 FVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFPTDFR-TKHM 340
++C CG K + H+RTHT +RP + C C+ F T TKHM
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHM 49
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 264 RFECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRT 314
++ C+ C KKH+ H+D +P+ C C FK K + HM++
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 181 LCTQCGFGCYTNRELEEHQILTH-GAEPYHCKYCDKTFTKRMNVKTHERMK 230
+C +CG L++H I TH PYHC YC+ +F + N+ H + K
Sbjct: 3 ICEECGIRXKKPSMLKKH-IRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 12/64 (18%)
Query: 110 EYPCEQCDRKFTNGYKLKQHMLTHMQKDTSISIDVISEIKKFKCDQCDYATKDKYNLGTH 169
+Y CE+C + LK+H+ TH ++++ + C C+++ K K NL H
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTH------------TDVRPYHCTYCNFSFKTKGNLTKH 48
Query: 170 IKRR 173
+K +
Sbjct: 49 MKSK 52
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.6 bits (70), Expect = 0.79, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 288 SDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
S KPF C+ C K F K Y+ +H +TH +P+
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPS 39
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KP+ C+ CGK F K +++H R HT P+
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENPS 41
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KP+ C +CGK F++ ++ H H+ RP+
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERPS 41
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 293 FVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
+ C++CGK+F ++ H R HT +P+
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPS 41
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KP+ CN CGK F ++ H R HT +P+
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKPS 41
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KP+ CN CGK F + H R HT +P+
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKPS 41
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 292 PFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
PF+C+ CGK F K + +H + HT RP+
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTGERPS 41
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KP++C CGK F ++ + H + HT+ +P+
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKPS 41
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 206 EPYHCKYCDKTFTKRMNVKTHERMKHENHKP 236
+PY C C K FT R N+ H+++ H KP
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKI-HTKQKP 40
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KPF C CGK F ++ H R HT +P+
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKPS 41
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KP+ CN CGK F ++ H R HT +P+
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKPS 41
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 290 AKPFVCNICGKDFKLKYYVNLHMR-THTRIRP 320
KP++C CGK F ++N H++ HT RP
Sbjct: 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERP 41
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 205 AEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYI 241
+PY C+ C K F++ ++ H + H + +P++C +
Sbjct: 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 235 KPYECYICNKILVSRGRLNEHLNQVHLAQR 264
KPY C C K LN H+ QVH ++R
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSER 40
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHS 107
P C CGK SR D L HI VH+
Sbjct: 12 PYICQSCGKGFSRPDHLNGHIKQVHT 37
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 208 YHCKYCDKTFTKRMNVKTHERMKHENHK 235
Y C+YC+K F N+KTH + KH K
Sbjct: 3 YQCQYCEKRFADSSNLKTHIKTKHSKEK 30
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 149 KKFKCDQCDYATKDKYNLGTHIKRRHTKE 177
K ++C C+ D NL THIK +H+KE
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHSKE 29
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 288 SDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
S K F C C K FK K+ + H+R HT
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHT 33
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KP+ CN CGK F+ + + +H TH+ +P+
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKPS 41
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KP+ C++C K F+ + +H R HT +P+
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKPS 41
>pdb|1KLS|A Chain A, Nmr Structure Of The Zfy-6t[y10l] Zinc Finger
Length = 30
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 149 KKFKCDQCDYATKDKYNLGTHIKRRHTKE 177
K ++C C+ + D NL THIK +H+KE
Sbjct: 1 KTYQCQYCELRSADSSNLKTHIKTKHSKE 29
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 182 CTQCGFGCYTNRELEEHQ---ILTHGAEPYHCKYCDKTFTKRMNVKTHERMKH 231
C CGF C L HQ T A + C++C K F K +V H H
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 235 KPYECYICNKILVSRGRLNEHLNQVHLAQR 264
KPYEC C K + G LN+H +VH +R
Sbjct: 11 KPYECKECRKTFIQIGHLNQH-KRVHTGER 39
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KP++CN CGK F + + H HT +P+
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKPS 41
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 207 PYHCKYCDKTFTKRMNVKTHERMKHENHKP 236
PY C C+K+F+ ++ + H+RM H KP
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRM-HTREKP 40
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 292 PFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
P+ C+ C K F K + +H R HTR +P+
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKPS 41
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 288 SDAKPFVCNICGKDFKLKYYVNLHMRTHTRI 318
S KP+VC+ CGK F K + +H HT +
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGV 36
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHT 316
KP+ CN C K F K + +H RTHT
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHT 36
>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
796- 828) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KPF C CG +F + H+R+H R P+
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSHERTDPS 41
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
+P+ C CGK FK K + H R+HT +P+
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKPS 41
>pdb|1XRZ|A Chain A, Nmr Structure Of A Zinc Finger With Cyclohexanylalanine
Substituted For The Central Aromatic Residue
Length = 30
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 149 KKFKCDQCDYATKDKYNLGTHIKRRHTKE 177
K ++C C+ + D NL THIK +H+KE
Sbjct: 1 KTYQCQYCEXRSADSSNLKTHIKTKHSKE 29
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHT 316
KPF C CGK F+ K + H R HT
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHT 36
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 206 EPYHCKYCDKTFTKRMNVKTHERM 229
+P+ C +C K+F + N+ TH+R+
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRI 34
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 1.8, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KPF C CGK F + + H R HT +P+
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKPS 41
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KPF C CGK F +N H R HT +P+
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKPS 41
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIR 319
KP+ C+ CGK F K +++H ++HT R
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 2.0, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTR 317
+PF CN CGK F + ++ H+R H+R
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSR 37
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 288 SDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
S KP+VC CGK F K + H R HT
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHT 34
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 202 THGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKP 236
+ G +PY C C K F ++ + THER+ P
Sbjct: 5 SSGEKPYVCTECGKAFIRKSHFITHERIHTGESGP 39
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 288 SDAKPFVCNICGKDFKLKYYVNLHMRTH 315
S KP+ C +CG FK K ++ H+R+H
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 30.0 bits (66), Expect = 2.2, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRI 318
KP+ CN CGK F K + +H RTH +
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAGV 38
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIR 319
KP+ C+ CGK F K + +H + HT R
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2ELV|A Chain A, Solution Structure Of The 6th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 107 SGKEYPCEQCDRKFTNGYKLKQHMLTHMQK 136
SG Y C C+RKF N +HML H K
Sbjct: 6 SGLLYDCHICERKFKNELDRDRHMLVHGDK 35
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KP+ C CGK F ++ H R HT +P+
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKPS 41
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KP+ CN CGK F+ + H HT +P+
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKPS 41
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KPF C CGK F H R+H+ +P+
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKPS 41
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEA 52
EC CGK +RKS L+ H R HT P
Sbjct: 14 ECSECGKAFARKSTLIMHQR-IHTGEKPSG 42
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 270 CHKTIVSEKTFKKHMALHSDAKPFVCNI--CGKDFKLKYYVNLHMRTH 315
C KT K H H+ KPF C+ C + F ++ H RTH
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
+P++C +CGK F + + H + HT +P+
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKPS 41
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 207 PYHCKYCDKTFTKRMNVKTHERMKHENHKP 236
PY C C K FT R N+ H+++ H KP
Sbjct: 12 PYICTVCGKAFTDRSNLIKHQKI-HTGEKP 40
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRP 320
K C ICGK F+ Y++N H +H+ +P
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKP 40
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KP+ C ICG F+ + H+R HT P+
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 206 EPYHCKYCDKTFTKRMNVKTHERM 229
+PY C+ C K + +R+N+ H+R+
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRV 34
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
+P CN CGK F ++ H R HT +P+
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKPS 41
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KP+ C CGK F H R HT RP+
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRPS 41
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEA 52
EC CGK + + L+ H R +HT P
Sbjct: 14 ECIECGKAFIQNTSLIRHWRYYHTGEKPSG 43
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHT 316
KP+ C CGK +K + ++ H R HT
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHT 36
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.5 bits (62), Expect = 5.6, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAG 53
EC CGK R S+L+ H R+ P +G
Sbjct: 14 ECSECGKAFIRNSQLIVHQRTHSGESGPSSG 44
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 293 FVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
F C CGK F K +++H + HT +P+
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPS 41
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 62 HMSQIQTMLMLDHKKPKSRAPVECSYCGKVLSRKDKLTRHIAAVH 106
H+S + HK+ P C +C K +RKD +T H+ +H
Sbjct: 22 HISNFCRHYVTSHKRNVKVYP--CPFCFKEFTRKDNMTAHVKIIH 64
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 204 GAEPYHCKYCDKTFTKRMNVKTHERMKHE-NHKPYECYICNKILVSRGRLNEHLNQVH 260
G Y CK C + +T N H H+ N K Y C C K + + H+ +H
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KP+ C CGK F+ + H R H+ +P+
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKPS 41
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KP C CGK F + +H R HT P+
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENPS 41
>pdb|2ELN|A Chain A, Solution Structure Of The 11th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 38
Score = 28.1 bits (61), Expect = 7.6, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 151 FKC--DQCDYATKDKYNLGTHIK 171
KC D CDY+T DKY L H+K
Sbjct: 10 LKCPTDGCDYSTPDKYKLQAHLK 32
>pdb|1PAA|A Chain A, Structure Of A Histidine-X4-Histidine Zinc Finger Domain:
Insights Into Adr1-Uas1 Protein-Dna Recognition
Length = 30
Score = 28.1 bits (61), Expect = 7.7, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 85 CSYCGKVLSRKDKLTRHIAAVHSG 108
C C + +R+D L RH +HSG
Sbjct: 5 CGLCNRAFTRRDLLIRHAQKIHSG 28
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KP+ CN CGK F ++ H HT +P+
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPS 41
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 292 PFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
PF CN CGK F +++ H H P+
Sbjct: 12 PFKCNECGKTFSHSAHLSKHQLIHAGENPS 41
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
KP+ CN CGK F ++ H HT +P+
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPS 41
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,340,297
Number of Sequences: 62578
Number of extensions: 461891
Number of successful extensions: 2729
Number of sequences better than 100.0: 177
Number of HSP's better than 100.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1327
Number of HSP's gapped (non-prelim): 1211
length of query: 372
length of database: 14,973,337
effective HSP length: 100
effective length of query: 272
effective length of database: 8,715,537
effective search space: 2370626064
effective search space used: 2370626064
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)