RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16828
(372 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 91.7 bits (229), Expect = 4e-22
Identities = 54/186 (29%), Positives = 77/186 (41%), Gaps = 19/186 (10%)
Query: 195 LEEHQILTH-GAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLN 253
G +PY C C K+F++ ++ H+R H KPY+C C K + L
Sbjct: 9 SVAQAA-LEPGEKPYACPECGKSFSRSDHLAEHQRT-HTGEKPYKCPECGKSFSDKKDLT 66
Query: 254 EHLNQVHLAQR-------FECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKY 306
H QR ++C C K+ + H H+ KP+ C CGK F
Sbjct: 67 RH-------QRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLA 119
Query: 307 YVNLHMRTHTRIRPTFECDVCHQIFPTDFR-TKHMLVHDVEKSHLCFVCGAGFVNDAGLK 365
++ H RTHT +P ++C C + F + H H EK + C CG F L
Sbjct: 120 HLRAHQRTHTGEKP-YKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALN 178
Query: 366 VHMRKH 371
VH R H
Sbjct: 179 VHQRTH 184
Score = 89.8 bits (224), Expect = 2e-21
Identities = 58/176 (32%), Positives = 81/176 (46%), Gaps = 18/176 (10%)
Query: 149 KKFKCDQCDYATKDKYNLGTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQILTH-GAEP 207
K + C +C + +L H +R HT E C +CG ++L HQ TH G +P
Sbjct: 20 KPYACPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSFSDKKDLTRHQR-THTGEKP 77
Query: 208 YHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHLNQVHLAQR--- 264
Y C C K+F++R N++ H+R H KPY C C K L H QR
Sbjct: 78 YKCPECGKSFSQRANLRAHQRT-HTGEKPYACPECGKSFSQLAHLRAH-------QRTHT 129
Query: 265 ----FECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
++C C K+ E H H+ KP+ C CGK F + +N+H RTHT
Sbjct: 130 GEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHT 185
Score = 84.4 bits (210), Expect = 2e-19
Identities = 62/176 (35%), Positives = 82/176 (46%), Gaps = 18/176 (10%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSI 140
P C CGK SR D L H H+G K Y C +C + F++ L +H TH +
Sbjct: 21 PYACPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGE---- 75
Query: 141 SIDVISEIKKFKCDQCDYATKDKYNLGTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQI 200
K +KC +C + + NL H +R HT E C +CG L HQ
Sbjct: 76 --------KPYKCPECGKSFSQRANLRAH-QRTHTGEKPYACPECGKSFSQLAHLRAHQR 126
Query: 201 LTH-GAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEH 255
TH G +PY C C K+F++ N+ TH+R H KPY+C C K R LN H
Sbjct: 127 -THTGEKPYKCPECGKSFSREDNLHTHQRT-HTGEKPYKCPECGKSFSRRDALNVH 180
Score = 76.3 bits (189), Expect = 1e-16
Identities = 62/208 (29%), Positives = 83/208 (39%), Gaps = 50/208 (24%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
CP CGK SR L H R+ HT G+ P
Sbjct: 23 ACPECGKSFSRSDHLAEHQRT-HT-------GEK-------------------------P 49
Query: 83 VECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSIS 141
+C CGK S K LTRH H+G K Y C +C + F+ L+ H TH +
Sbjct: 50 YKCPECGKSFSDKKDLTRH-QRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGE----- 103
Query: 142 IDVISEIKKFKCDQCDYATKDKYNLGTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQIL 201
K + C +C + +L H +R HT E C +CG L HQ
Sbjct: 104 -------KPYACPECGKSFSQLAHLRAH-QRTHTGEKPYKCPECGKSFSREDNLHTHQR- 154
Query: 202 TH-GAEPYHCKYCDKTFTKRMNVKTHER 228
TH G +PY C C K+F++R + H+R
Sbjct: 155 THTGEKPYKCPECGKSFSRRDALNVHQR 182
Score = 49.7 bits (120), Expect = 2e-07
Identities = 40/156 (25%), Positives = 59/156 (37%), Gaps = 48/156 (30%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
+CP CGK S+++ L +H R+ HT G+ P
Sbjct: 79 KCPECGKSFSQRANLRAHQRT-HT-------GEK-------------------------P 105
Query: 83 VECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSIS 141
C CGK S+ L H H+G K Y C +C + F+ L H TH +
Sbjct: 106 YACPECGKSFSQLAHLRAH-QRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGE----- 159
Query: 142 IDVISEIKKFKCDQCDYATKDKYNLGTHIKRRHTKE 177
K +KC +C + + L H +R HT +
Sbjct: 160 -------KPYKCPECGKSFSRRDALNVH-QRTHTGK 187
Score = 34.3 bits (80), Expect = 0.029
Identities = 16/71 (22%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
Query: 302 FKLKYYVNLHMRTHTRIRPTFECDVCHQIFPTDFR-TKHMLVHDVEKSHLCFVCGAGFVN 360
+P + C C + F +H H EK + C CG F +
Sbjct: 3 EFGSSSSVAQAALEPGEKP-YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61
Query: 361 DAGLKVHMRKH 371
L H R H
Sbjct: 62 KKDLTRHQRTH 72
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 74.5 bits (184), Expect = 1e-16
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 204 GAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEH--LNQVHL 261
G+ C C K F + +K H R H KP+EC C K + L EH N ++
Sbjct: 4 GSSGVECPTCHKKFLSKYYLKVHNRK-HTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 262 AQR-FECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHM-RTHT 316
+++ F C +C +T + HM H+ P+ C+ C + F K + HM + H+
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 68.3 bits (168), Expect = 2e-14
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
Query: 149 KKFKCDQCDYATKDKYNLGTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQ--ILTH-GA 205
+C C KY L H R+HT E C +CG + L EH+ +
Sbjct: 6 SGVECPTCHKKFLSKYYLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSE 64
Query: 206 EPYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHLNQVH 260
+ + C C +TF +RM ++ H H PY+C C++ + + L H+ ++H
Sbjct: 65 QVFTCSVCQETFRRRMELRLHMVS-HTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 61.8 bits (151), Expect = 4e-12
Identities = 37/160 (23%), Positives = 54/160 (33%), Gaps = 48/160 (30%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
ECP C K K L H R HT G+ P
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRK-HT-------GEK-------------------------P 35
Query: 83 VECSYCGKVLSRKDKLTRH--IAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTS 139
EC CGK RK+ L H ++ + + C C F +L+ HM++H +
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGE--- 92
Query: 140 ISIDVISEIKKFKCDQCDYATKDKYNLGTHIKRRHTKEYS 179
+KC C K +L +H+ + H+ S
Sbjct: 93 ---------MPYKCSSCSQQFMQKKDLQSHMIKLHSGPSS 123
Score = 59.4 bits (145), Expect = 2e-11
Identities = 34/110 (30%), Positives = 46/110 (41%), Gaps = 5/110 (4%)
Query: 265 FECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMR---THTRIRPT 321
EC CHK +S+ K H H+ KPF C CGK + K + H + +
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV- 66
Query: 322 FECDVCHQIFPTDFR-TKHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRK 370
F C VC + F HM+ H E + C C F+ L+ HM K
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIK 116
Score = 57.1 bits (139), Expect = 2e-10
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 287 HSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFPTDFR-TKHM---LV 342
S + C C K F KYY+ +H R HT +P FEC C + + +H +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKCGKCYFRKENLLEHEARNCM 60
Query: 343 HDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
+ E+ C VC F L++HM H
Sbjct: 61 NRSEQVFTCSVCQETFRRRMELRLHMVSH 89
Score = 56.4 bits (137), Expect = 3e-10
Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 12/123 (9%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSI 140
VEC C K K L H H+G K + C +C + + L +H + +
Sbjct: 7 GVECPTCHKKFLSKYYLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEH-----EARNCM 60
Query: 141 SIDVISEIKKFKCDQCDYATKDKYNLGTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQI 200
+ SE + F C C + + L H HT E C+ C ++L+ H I
Sbjct: 61 N---RSE-QVFTCSVCQETFRRRMELRLH-MVSHTGEMPYKCSSCSQQFMQKKDLQSHMI 115
Query: 201 LTH 203
H
Sbjct: 116 KLH 118
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 73.4 bits (181), Expect = 1e-15
Identities = 51/193 (26%), Positives = 82/193 (42%), Gaps = 30/193 (15%)
Query: 82 PVECSY--CGKVLSRKDKLTRHIAAVHSG-KEYPCEQ--CDRKFTNGYKLKQHMLTHMQK 136
CS+ CG ++ KL H+ H+G K +PC++ C++ FT+ + L +H LTH +
Sbjct: 12 RYICSFADCGAAYNKNWKLQAHLC-KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 70
Query: 137 DTSISIDVISEIKKFKCDQ--CDYATKDKYNLGTHIKRRHTKE----YSVLCTQCGFGCY 190
K F CD CD K N+ H R Y CG
Sbjct: 71 ------------KNFTCDSDGCDLRFTTKANMKKH-FNRFHNIKICVYVCHFENCGKAFK 117
Query: 191 TNRELEEHQILTH-GAEPYHCK--YCDKTFTKRMNVKTHERMKHENHKPYECYICNKILV 247
+ +L+ HQ +H PY C CDK F+ +K HE++ H + + C+ +
Sbjct: 118 KHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKV-HAGYPCKKDDSCSFVGK 175
Query: 248 SRGRLNEHLNQVH 260
+ +H+ + H
Sbjct: 176 TWTLYLKHVAECH 188
Score = 64.2 bits (157), Expect = 2e-12
Identities = 45/196 (22%), Positives = 67/196 (34%), Gaps = 30/196 (15%)
Query: 198 HQILTHGAEPYHCKY--CDKTFTKRMNVKTHERMKHENHKPYEC--YICNKILVSRGRLN 253
+ L + Y C + C + K ++ H H KP+ C C K S L
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCK-HTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 254 EHLNQVHLAQR-------FECK--LCHKTIVSEKTFKKHMALHSDAK--PFVCNI--CGK 300
H F C C ++ KKH + K +VC+ CGK
Sbjct: 62 RH-------SLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGK 114
Query: 301 DFKLKYYVNLHMRTHTRIRPTFEC--DVCHQIFPTDFR-TKHMLVHDVEKSHLCFVCGAG 357
FK + +H +HT+ P +EC + C + F R +H VH C
Sbjct: 115 AFKKHNQLKVHQFSHTQQLP-YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFV 173
Query: 358 FVNDAGLKVHMRK-HQ 372
H+ + HQ
Sbjct: 174 GKTWTLYLKHVAECHQ 189
Score = 51.8 bits (125), Expect = 4e-08
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Query: 282 KHMALHSDAKPFVCNI--CGKDFKLKYYVNLHMRTHTRIRPTFECD--VCHQIFPTDFR- 336
AL K ++C+ CG + + + H+ HT +P F C C + F +
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKP-FPCKEEGCEKGFTSLHHL 60
Query: 337 TKHMLVHDVEKSHLC--FVCGAGFVNDAGLKVHMRKH 371
T+H L H EK+ C C F A +K H +
Sbjct: 61 TRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRF 97
Score = 38.7 bits (91), Expect = 0.001
Identities = 32/192 (16%), Positives = 47/192 (24%), Gaps = 58/192 (30%)
Query: 23 EC--PVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSR 80
C C K + L H + HT G+
Sbjct: 44 PCKEEGCEKGFTSLHHLTRHSLT-HT-------GEK------------------------ 71
Query: 81 APVECS--YCGKVLSRKDKLTRHIAAVHSG-KEYP----CEQCDRKFTNGYKLKQHMLTH 133
C C + K + +H K E C + F +LK H +H
Sbjct: 72 -NFTCDSDGCDLRFTTKANMKKHF-NRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSH 129
Query: 134 MQKDTSISIDVISEIKKFKCDQ--CDYATKDKYNLGTHIKRRHTKEYSVLCTQCGFGCYT 191
Q+ ++C CD L H ++ H C F T
Sbjct: 130 TQQ------------LPYECPHEGCDKRFSLPSRLKRH-EKVHAGYPCKKDDSCSFVGKT 176
Query: 192 NRELEEHQILTH 203
+H H
Sbjct: 177 WTLYLKHVAECH 188
Score = 38.3 bits (90), Expect = 0.002
Identities = 26/160 (16%), Positives = 43/160 (26%), Gaps = 51/160 (31%)
Query: 23 EC--PVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSR 80
C C + K+ + H +
Sbjct: 74 TCDSDGCDLRFTTKANMKKHFNR-FHN------------------------------IKI 102
Query: 81 APVECSY--CGKVLSRKDKLTRHIAAVHSG-KEYPCEQ--CDRKFTNGYKLKQHMLTHMQ 135
C + CGK + ++L H H+ Y C CD++F+ +LK+H H
Sbjct: 103 CVYVCHFENCGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH-- 159
Query: 136 KDTSISIDVISEIKKFKCDQCDYATKDKYNLGTHIKRRHT 175
+ K D C + K H+ H
Sbjct: 160 ----------AGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 69.5 bits (171), Expect = 1e-14
Identities = 33/175 (18%), Positives = 60/175 (34%), Gaps = 34/175 (19%)
Query: 207 PYHCKYCDKTFTKRMNVKTHERMK--HENHKPYECYICNKILVSRGRLNEHLNQVHLAQR 264
C + F + + H + H K + C+
Sbjct: 3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG--------------------- 41
Query: 265 FECKLCHKTIVSEKTFKKHMALHSDAKPFVCNI--CGKDFKLKYYVNLHMRTHTRIRPTF 322
C + ++ HM H+ KP C C K + + H+R+HT +P +
Sbjct: 42 --CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKP-Y 98
Query: 323 EC--DVCHQIFPT-DFRTKHML-VHDVEKSHLCFV--CGAGFVNDAGLKVHMRKH 371
C + C + F R KH H EK ++C + C + + + L+ H++
Sbjct: 99 MCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 67.6 bits (166), Expect = 8e-14
Identities = 45/218 (20%), Positives = 76/218 (34%), Gaps = 75/218 (34%)
Query: 109 KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSISIDVISEIKKFKCDQCDYATKDK----- 163
+ + C ++F + +L H+ + + E K+F C + + +
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEH---------IHGERKEFVCHWGGCSRELRPFKAQ 52
Query: 164 YNLGTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQILTHGAEPYHCKY--CDKTFTKRM 221
Y L H+ RRHT E +P+ C + C K++++
Sbjct: 53 YMLVVHM-RRHTGE----------------------------KPHKCTFEGCRKSYSRLE 83
Query: 222 NVKTHERMKHENHKPYECYICNKILVSRGRLNEHLNQVHLAQRFECKLCHKTIVSEKTFK 281
N+KTH R H KPY C E + C K +
Sbjct: 84 NLKTHLRS-HTGEKPYMC--------------------------EHEGCSKAFSNASDRA 116
Query: 282 KHMA-LHSDAKPFVCNI--CGKDFKLKYYVNLHMRTHT 316
KH HS+ KP+VC + C K + + H++T
Sbjct: 117 KHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 64.9 bits (159), Expect = 7e-13
Identities = 41/162 (25%), Positives = 59/162 (36%), Gaps = 28/162 (17%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAA--VHSG-KEYPCEQCD-----RKFTNGYKLKQHMLTH 133
C + +++L HI + +H KE+ C R F Y L HM H
Sbjct: 3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRH 62
Query: 134 MQKDTSISIDVISEIKKFKCD--QCDYATKDKYNLGTHIKRRHTKEYSVLCTQ--CGFGC 189
+ K KC C + NL TH R HT E +C C
Sbjct: 63 ------------TGEKPHKCTFEGCRKSYSRLENLKTH-LRSHTGEKPYMCEHEGCSKAF 109
Query: 190 YTNRELEEHQILTH-GAEPYHCKY--CDKTFTKRMNVKTHER 228
+ +HQ TH +PY CK C K +T +++ H +
Sbjct: 110 SNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVK 151
Score = 49.9 bits (120), Expect = 9e-08
Identities = 32/145 (22%), Positives = 53/145 (36%), Gaps = 36/145 (24%)
Query: 235 KPYECYICNKILVSRGRLNEHLNQVHLAQRFECKLCHKTIVSEKTFKKHMALHSDAKPFV 294
C++ S+ +L H+N H+ H + K FV
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHI-------------------------HGERKEFV 36
Query: 295 CNICG-----KDFKLKYYVNLHMRTHTRIRPTFECDV--CHQIFPT-DFRTKHMLVHDVE 346
C+ G + FK +Y + +HMR HT +P +C C + + + H+ H E
Sbjct: 37 CHWGGCSRELRPFKAQYMLVVHMRRHTGEKP-HKCTFEGCRKSYSRLENLKTHLRSHTGE 95
Query: 347 KSHLC--FVCGAGFVNDAGLKVHMR 369
K ++C C F N + H
Sbjct: 96 KPYMCEHEGCSKAFSNASDRAKHQN 120
Score = 42.2 bits (100), Expect = 4e-05
Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 40/118 (33%)
Query: 23 ECPV--CGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSR 80
+C C K SR L +H+RS HT G+
Sbjct: 69 KCTFEGCRKSYSRLENLKTHLRS-HT-------GEK------------------------ 96
Query: 81 APVECSY--CGKVLSRKDKLTRHIAAVHSG-KEYPCE--QCDRKFTNGYKLKQHMLTH 133
P C + C K S +H HS K Y C+ C +++T+ L++H+ T
Sbjct: 97 -PYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 37.6 bits (88), Expect = 0.002
Identities = 29/117 (24%), Positives = 41/117 (35%), Gaps = 40/117 (34%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
C + + LV HMR HT G+ P
Sbjct: 41 GCSRELRPFKAQYMLVVHMRR-HT-------GEK-------------------------P 67
Query: 83 VECSY--CGKVLSRKDKLTRHIAAVHSG-KEYPCEQ--CDRKFTNGYKLKQHML-TH 133
+C++ C K SR + L H+ H+G K Y CE C + F+N +H TH
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHL-RSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 64.4 bits (158), Expect = 2e-13
Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 31/124 (25%)
Query: 202 THGAE-PYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHLNQVH 260
+ G+ P+ C+ C K F+++ +KTH R H KPY+C C+ LN+H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRC-HTGVKPYKCKTCDYAAADSSSLNKH----- 55
Query: 261 LAQRFECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRP 320
R +HSD +PF C IC + + +H+R+HT
Sbjct: 56 --LR---------------------IHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSG 92
Query: 321 TFEC 324
Sbjct: 93 -PSS 95
Score = 57.8 bits (141), Expect = 4e-11
Identities = 20/93 (21%), Positives = 28/93 (30%), Gaps = 6/93 (6%)
Query: 149 KKFKCDQCDYATKDKYNLGTHIKRRHTKEYSVLCTQCG--FGCYTNRELEEHQILTHGAE 206
KC+ C K L TH R HT C C ++ L +H +
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTH-MRCHTGVKPYKCKTCDYAAADSSS--LNKHLRIHSDER 63
Query: 207 PYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
P+ C+ C + H R H
Sbjct: 64 PFKCQICPYASRNSSQLTVHLRS-HTGDSGPSS 95
Score = 56.3 bits (137), Expect = 2e-10
Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 15/97 (15%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSI 140
P +C CGK SRKDKL H+ H+G K Y C+ CD + L +H+ H
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHM-RCHTGVKPYKCKTCDYAAADSSSLNKHLRIH------- 59
Query: 141 SIDVISEIKKFKCDQCDYATKDKYNLGTHIKRRHTKE 177
S+ + FKC C YA+++ L H R HT +
Sbjct: 60 -----SDERPFKCQICPYASRNSSQLTVH-LRSHTGD 90
Score = 56.3 bits (137), Expect = 2e-10
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 287 HSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFP-TDFRTKHMLVHDV 345
+ P C +CGK F K + HMR HT ++P ++C C + KH+ +H
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRIHSD 61
Query: 346 EKSHLCFVCGAGFVNDAGLKVHMRKH 371
E+ C +C N + L VH+R H
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLRSH 87
Score = 50.1 bits (121), Expect = 3e-08
Identities = 29/112 (25%), Positives = 42/112 (37%), Gaps = 35/112 (31%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
+C VCGK SRK KL +HMR HT G P
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRC-HT-------GVK-------------------------P 36
Query: 83 VECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
+C C + L +H+ +HS + + C+ C N +L H+ +H
Sbjct: 37 YKCKTCDYAAADSSSLNKHL-RIHSDERPFKCQICPYASRNSSQLTVHLRSH 87
Score = 48.6 bits (117), Expect = 1e-07
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 174 HTKEYSVLCTQCG--FGCYTNRELEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKH 231
C CG F L+ H G +PY CK CD ++ H R+ H
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDK--LKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-H 59
Query: 232 ENHKPYECYICNKILVSRGRLNEH 255
+ +P++C IC + +L H
Sbjct: 60 SDERPFKCQICPYASRNSSQLTVH 83
Score = 30.1 bits (69), Expect = 0.26
Identities = 15/92 (16%), Positives = 24/92 (26%), Gaps = 35/92 (38%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
+C C + S L H+R H+ + P
Sbjct: 38 KCKTCDYAAADSSSLNKHLRI-HS-------DER-------------------------P 64
Query: 83 VECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
+C C +LT H+ H+G
Sbjct: 65 FKCQICPYASRNSSQLTVHL-RSHTGDSGPSS 95
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 65.8 bits (161), Expect = 3e-13
Identities = 40/159 (25%), Positives = 60/159 (37%), Gaps = 26/159 (16%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHLN 257
+ + K CD+TF+ + TH P +
Sbjct: 16 CKWIDEAQLSRPKKSCDRTFSTMHELVTHVT-MEHVGGPEQNN----------------- 57
Query: 258 QVHLAQRFECKLCHKTIVSEKTFKKHMALHSDAKPFVCNI--CGKDFKLKYYVNLHMRTH 315
H+ EC K+ ++ H+ +H+ KPF C CGK F + +H RTH
Sbjct: 58 --HVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH 115
Query: 316 TRIRPTFECDV--CHQIFPT-DFRTKHMLVHDVEKSHLC 351
T +P F+C+ C + F R KHM VH +KS
Sbjct: 116 TGEKP-FKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 62.7 bits (153), Expect = 3e-12
Identities = 33/166 (19%), Positives = 44/166 (26%), Gaps = 39/166 (23%)
Query: 171 KRRHTKEYSVLCTQCGFGCYTNRELEEHQILTHGAEPYH---------CKYCDKTFTKRM 221
K + S C T EL H + H P C K+F +
Sbjct: 17 KWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKY 76
Query: 222 NVKTHERMKHENHKPYECYICNKILVSRGRLNEHLNQVHLAQRFECKLCHKTIVSEKTFK 281
+ H R+ H KP+ C C K + K
Sbjct: 77 KLVNHIRV-HTGEKPFPCPFPG--------------------------CGKIFARSENLK 109
Query: 282 KHMALHSDAKPFVCNI--CGKDFKLKYYVNLHMRTHTRIRPTFECD 325
H H+ KPF C C + F HM HT +
Sbjct: 110 IHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKS-GPSS 154
Score = 58.1 bits (141), Expect = 2e-10
Identities = 34/171 (19%), Positives = 49/171 (28%), Gaps = 55/171 (32%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSGKEY---------PCEQCDRKFTNGYKLKQHMLT 132
C + S +L H+ H G C + + F YKL H+
Sbjct: 25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV 84
Query: 133 HMQKDTSISIDVISEIKKFKCD--QCDYATKDKYNLGTHIKRRHTKEYSVLCTQCGFGCY 190
H + K F C C NL H KR HT E
Sbjct: 85 HTGE------------KPFPCPFPGCGKIFARSENLKIH-KRTHTGE------------- 118
Query: 191 TNRELEEHQILTHGAEPYHCKY--CDKTFTKRMNVKTHERMKHENHKPYEC 239
+P+ C++ CD+ F + K H + H + K
Sbjct: 119 ---------------KPFKCEFEGCDRRFANSSDRKKHMHV-HTSDKSGPS 153
Score = 50.7 bits (122), Expect = 6e-08
Identities = 29/114 (25%), Positives = 37/114 (32%), Gaps = 28/114 (24%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
C + S +LV+H+ PE +
Sbjct: 27 PKKSCDRTFSTMHELVTHVTM-EHVGGPE-----------------------QNNHVCYW 62
Query: 83 VECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC--EQCDRKFTNGYKLKQHMLTH 133
EC GK K KL HI VH+G K +PC C + F LK H TH
Sbjct: 63 EECPREGKSFKAKYKLVNHI-RVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH 115
Score = 50.0 bits (120), Expect = 1e-07
Identities = 21/100 (21%), Positives = 31/100 (31%), Gaps = 11/100 (11%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRP--------TFECDVCHQIFPTD 334
+ C + F + + H+ P EC + F
Sbjct: 16 CKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAK 75
Query: 335 FR-TKHMLVHDVEKSHLCFV--CGAGFVNDAGLKVHMRKH 371
++ H+ VH EK C CG F LK+H R H
Sbjct: 76 YKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTH 115
Score = 45.4 bits (108), Expect = 4e-06
Identities = 36/116 (31%), Positives = 47/116 (40%), Gaps = 39/116 (33%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
ECP GK K KLV+H+R HT G+ P
Sbjct: 64 ECPREGKSFKAKYKLVNHIRV-HT-------GEK-------------------------P 90
Query: 83 VECSY--CGKVLSRKDKLTRHIAAVHSG-KEYPC--EQCDRKFTNGYKLKQHMLTH 133
C + CGK+ +R + L H H+G K + C E CDR+F N K+HM H
Sbjct: 91 FPCPFPGCGKIFARSENLKIHK-RTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
Score = 29.9 bits (68), Expect = 0.64
Identities = 5/35 (14%), Positives = 9/35 (25%)
Query: 337 TKHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
+ + + S C F L H+
Sbjct: 14 LSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTME 48
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 63.6 bits (156), Expect = 6e-13
Identities = 31/130 (23%), Positives = 49/130 (37%), Gaps = 30/130 (23%)
Query: 195 LEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNE 254
++ + + + CK+C + FTK N+ HER H + +PY C IC+K + L +
Sbjct: 5 SSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERT-HTDERPYTCDICHKAFRRQDHLRD 63
Query: 255 HLNQVHLAQRFECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRT 314
H + +HS KPF C CGK F + +H
Sbjct: 64 H-------RY---------------------IHSKEKPFKCQECGKGFCQSRTLAVHKTL 95
Query: 315 HTRIRPTFEC 324
H +
Sbjct: 96 HMQTSS-PTA 104
Score = 58.2 bits (142), Expect = 5e-11
Identities = 33/91 (36%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFP-TDFRTKHM 340
K F+C CG+ F Y + +H RTHT RP + CD+CH+ F D H
Sbjct: 7 GGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERP-YTCDICHKAFRRQDHLRDHR 65
Query: 341 LVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
+H EK C CG GF L VH H
Sbjct: 66 YIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 51.7 bits (125), Expect = 8e-09
Identities = 28/143 (19%), Positives = 46/143 (32%), Gaps = 44/143 (30%)
Query: 98 LTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSISIDVISEIKKFKCDQC 156
+ KE+ C+ C R FT Y L H TH + + + CD C
Sbjct: 5 SSGG-RLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDE------------RPYTCDIC 51
Query: 157 DYATKDKYNLGTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQILTHGAEPYHCKYCDKT 216
A + + +L H + H+KE +P+ C+ C K
Sbjct: 52 HKAFRRQDHLRDH-RYIHSKE----------------------------KPFKCQECGKG 82
Query: 217 FTKRMNVKTHERMKHENHKPYEC 239
F + + H+ + H
Sbjct: 83 FCQSRTLAVHKTL-HMQTSSPTA 104
Score = 46.7 bits (112), Expect = 5e-07
Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 15/97 (15%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSI 140
C +CG+ ++ L H H+ + Y C+ C + F L+ H H
Sbjct: 17 EFICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLRDHRYIH------- 68
Query: 141 SIDVISEIKKFKCDQCDYATKDKYNLGTHIKRRHTKE 177
S+ K FKC +C L H K H +
Sbjct: 69 -----SKEKPFKCQECGKGFCQSRTLAVH-KTLHMQT 99
Score = 45.1 bits (108), Expect = 2e-06
Identities = 26/113 (23%), Positives = 37/113 (32%), Gaps = 35/113 (30%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
C CG+ ++ L+ H R HT + P
Sbjct: 19 ICKFCGRHFTKSYNLLIHER-THT-------DER-------------------------P 45
Query: 83 VECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTHM 134
C C K R+D L H +HS K + C++C + F L H HM
Sbjct: 46 YTCDICHKAFRRQDHLRDH-RYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHM 97
Score = 29.7 bits (68), Expect = 0.44
Identities = 15/92 (16%), Positives = 22/92 (23%), Gaps = 35/92 (38%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
C +C K R+ L H H+ + P
Sbjct: 47 TCDICHKAFRRQDHLRDHRYI-HS-------KEK-------------------------P 73
Query: 83 VECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
+C CGK + L H +H
Sbjct: 74 FKCQECGKGFCQSRTLAVH-KTLHMQTSSPTA 104
Score = 27.8 bits (63), Expect = 2.1
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 337 TKHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
+ L +K +C CG F L +H R H
Sbjct: 6 SGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTH 40
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 60.6 bits (148), Expect = 9e-12
Identities = 37/167 (22%), Positives = 52/167 (31%), Gaps = 55/167 (32%)
Query: 207 PYHCKY--CDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHLNQVHLAQR 264
P+ C Y C+K + K +++ H R H KPY+C
Sbjct: 6 PFMCAYPGCNKRYFKLSHLQMHSRK-HTGEKPYQC------------------------- 39
Query: 265 FECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ K C + K+H H+ KPF C C + F ++ H RTHT +P F C
Sbjct: 40 -DFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKP-FSC 97
Query: 325 DVCHQIFPTDFRTKHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
C F L H H
Sbjct: 98 RWPS-------------------------CQKKFARSDELVRHHNMH 119
Score = 49.1 bits (118), Expect = 9e-08
Identities = 37/155 (23%), Positives = 56/155 (36%), Gaps = 49/155 (31%)
Query: 82 PVECSY--CGKVLSRKDKLTRHIAAVHSG-KEYPCE--QCDRKFTNGYKLKQHMLTHMQK 136
P C+Y C K + L H H+G K Y C+ C+R+F+ +LK+H H
Sbjct: 6 PFMCAYPGCNKRYFKLSHLQMHS-RKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH--- 61
Query: 137 DTSISIDVISEIKKFKCDQCDYATKDKYNLGTHIKRRHTKEYSVLCTQCGFGCYTNRELE 196
+ +K F+C C +L TH R HT
Sbjct: 62 ---------TGVKPFQCKTCQRKFSRSDHLKTH-TRTHT--------------------- 90
Query: 197 EHQILTHGAEPYHCKY--CDKTFTKRMNVKTHERM 229
G +P+ C++ C K F + + H M
Sbjct: 91 -------GEKPFSCRWPSCQKKFARSDELVRHHNM 118
Score = 45.2 bits (108), Expect = 3e-06
Identities = 32/112 (28%), Positives = 42/112 (37%), Gaps = 37/112 (33%)
Query: 25 PVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAPVE 84
P C K + S L H R HT G+ P +
Sbjct: 12 PGCNKRYFKLSHLQMHSRK-HT-------GEK-------------------------PYQ 38
Query: 85 CSY--CGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
C + C + SR D+L RH H+G K + C+ C RKF+ LK H TH
Sbjct: 39 CDFKDCERRFSRSDQLKRHQR-RHTGVKPFQCKTCQRKFSRSDHLKTHTRTH 89
Score = 42.9 bits (102), Expect = 1e-05
Identities = 27/114 (23%), Positives = 37/114 (32%), Gaps = 37/114 (32%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
+ C + SR +L H R HT G P
Sbjct: 40 DFKDCERRFSRSDQLKRHQRR-HT-------GVK-------------------------P 66
Query: 83 VECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCE--QCDRKFTNGYKLKQHMLTH 133
+C C + SR D L H H+G K + C C +KF +L +H H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHT-RTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 59.1 bits (144), Expect = 3e-11
Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 34/149 (22%)
Query: 176 KEYSVLCTQCG--FGCYTNRELEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHEN 233
+ + C F + + +H THG + C C K F + +K H+ + H
Sbjct: 4 RTIACPHKGCTKMFRDNSA--MRKHLH-THGPRVHVCAECGKAFVESSKLKRHQLV-HTG 59
Query: 234 HKPYECYICNKILVSRGRLNEHLNQVHLAQRFECKLCHKTIVSEKTFKKHMALHSDAKPF 293
KP++C + C K + + H+ +H+ +P+
Sbjct: 60 EKPFQC--------------------------TFEGCGKRFSLDFNLRTHVRIHTGDRPY 93
Query: 294 VCNI--CGKDFKLKYYVNLHMRTHTRIRP 320
VC C K F + H+ TH + +
Sbjct: 94 VCPFDGCNKKFAQSTNLKSHILTHAKAKN 122
Score = 57.1 bits (139), Expect = 2e-10
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 9/114 (7%)
Query: 265 FEC--KLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTF 322
C K C K +KH+ H + VC CGK F + H HT +P F
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQLVHTGEKP-F 63
Query: 323 ECDV--CHQIFPTDFR-TKHMLVHDVEKSHLCFV--CGAGFVNDAGLKVHMRKH 371
+C C + F DF H+ +H ++ ++C C F LK H+ H
Sbjct: 64 QCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 50.6 bits (122), Expect = 3e-08
Identities = 36/163 (22%), Positives = 58/163 (35%), Gaps = 49/163 (30%)
Query: 82 PVECSY--CGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTHMQKDTS 139
+ C + C K+ + +H+ H + + C +C + F KLK+H L H +
Sbjct: 5 TIACPHKGCTKMFRDNSAMRKHLH-THGPRVHVCAECGKAFVESSKLKRHQLVHTGE--- 60
Query: 140 ISIDVISEIKKFKC--DQCDYATKDKYNLGTHIKRRHTKEYSVLCTQCGFGCYTNRELEE 197
K F+C + C +NL TH R HT +
Sbjct: 61 ---------KPFQCTFEGCGKRFSLDFNLRTH-VRIHTGD-------------------- 90
Query: 198 HQILTHGAEPYHCKY--CDKTFTKRMNVKTHERMKHENHKPYE 238
PY C + C+K F + N+K+H H K +
Sbjct: 91 --------RPYVCPFDGCNKKFAQSTNLKSHILT-HAKAKNNQ 124
Score = 41.3 bits (98), Expect = 5e-05
Identities = 32/116 (27%), Positives = 44/116 (37%), Gaps = 39/116 (33%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
C CGK SKL H HT G+ P
Sbjct: 36 VCAECGKAFVESSKLKRHQLV-HT-------GEK-------------------------P 62
Query: 83 VECSY--CGKVLSRKDKLTRHIAAVHSG-KEYPC--EQCDRKFTNGYKLKQHMLTH 133
+C++ CGK S L H+ +H+G + Y C + C++KF LK H+LTH
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHV-RIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 41.3 bits (98), Expect = 6e-05
Identities = 38/173 (21%), Positives = 58/173 (33%), Gaps = 60/173 (34%)
Query: 12 IEPKPSKYIKVECPV--CGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTM 69
+EP+ + CP C K+ S + H+ T G
Sbjct: 1 MEPRT-----IACPHKGCTKMFRDNSAMRKHLH----------------THG-------- 31
Query: 70 LMLDHKKPKSRAPVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC--EQCDRKFTNGYKL 126
P+ C+ CGK KL RH VH+G K + C E C ++F+ + L
Sbjct: 32 -------PR---VHVCAECGKAFVESSKLKRHQ-LVHTGEKPFQCTFEGCGKRFSLDFNL 80
Query: 127 KQHMLTHMQKDTSISIDVISEIKKFKC--DQCDYATKDKYNLGTHIKRRHTKE 177
+ H+ H + + C D C+ NL +H H K
Sbjct: 81 RTHVRIHTGD------------RPYVCPFDGCNKKFAQSTNLKSH-ILTHAKA 120
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 56.4 bits (137), Expect = 1e-10
Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 17/99 (17%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSI 140
P +C C + SR D LT HI H+G K + C+ C RKF + K+H
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHRDIQH------ 55
Query: 141 SIDVISEIKKFKCDQCDYATKDKYNLGTHIK--RRHTKE 177
I D+ + Y+L + ++ E
Sbjct: 56 -------ILPILEDKVEELLSKNYHLENEVARLKKLVGE 87
Score = 53.7 bits (130), Expect = 1e-09
Identities = 17/113 (15%), Positives = 35/113 (30%), Gaps = 33/113 (29%)
Query: 207 PYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHLNQVHLAQRFE 266
P+ C+ C + F++ ++ TH R H KP+ C IC +
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDER-------------- 47
Query: 267 CKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYV---NLHMRTHT 316
K+H + P + + + Y++ ++
Sbjct: 48 --------------KRHRDIQHI-LPILEDKVEELLSKNYHLENEVARLKKLV 85
Score = 53.3 bits (129), Expect = 2e-09
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFP-TDFRTKHMLVHDVEKSH 349
KPF C IC ++F ++ H+RTHT +P F CD+C + F +D R +H +
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRHRDIQ-HILPI 59
Query: 350 LCFVCGAGFVNDAGLKVH---MRKH 371
L + L+ ++K
Sbjct: 60 LEDKVEELLSKNYHLENEVARLKKL 84
Score = 47.5 bits (114), Expect = 2e-07
Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 34/108 (31%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
+C +C + SR L +H+R+ HT G+ P
Sbjct: 5 QCRICMRNFSRSDHLTTHIRT-HT-------GEK-------------------------P 31
Query: 83 VECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHM 130
C CG+ +R D+ RH + ++ + + Y L+ +
Sbjct: 32 FACDICGRKFARSDERKRHR-DIQHILPILEDKVEELLSKNYHLENEV 78
Score = 44.8 bits (107), Expect = 2e-06
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 6/83 (7%)
Query: 148 IKKFKCDQCDYATKDKYNLGTHIKRRHTKEYSVLCTQCG--FGCYTNRELEEHQILTHGA 205
+K F+C C +L TH R HT E C CG F + H+
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTH-IRTHTGEKPFACDICGRKFARSDE--RKRHRD-IQHI 56
Query: 206 EPYHCKYCDKTFTKRMNVKTHER 228
P ++ +K +++
Sbjct: 57 LPILEDKVEELLSKNYHLENEVA 79
Score = 30.2 bits (69), Expect = 0.21
Identities = 11/88 (12%), Positives = 20/88 (22%), Gaps = 36/88 (40%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
C +CG+ +R + H P
Sbjct: 33 ACDICGRKFARSDERKRHRDI-QH----------------------------IL-----P 58
Query: 83 VECSYCGKVLSRKDKLTRHIAA--VHSG 108
+ ++LS+ L +A G
Sbjct: 59 ILEDKVEELLSKNYHLENEVARLKKLVG 86
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 55.2 bits (134), Expect = 3e-10
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 195 LEEHQILTH-GAEPYHCKYCDKTFTKRMNVKTHERMKH-ENHKPYECYICNKILVSRGRL 252
TH G +PY C C FT+ +K H KH EN + C C+ ++ + L
Sbjct: 3 SGSSG-RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 253 NEHLNQVH 260
HL + H
Sbjct: 62 GVHLRKQH 69
Score = 53.3 bits (129), Expect = 1e-09
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 12/82 (14%)
Query: 97 KLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSISIDVISEIKKFKCDQ 155
HSG K Y C C +FT +K H+L + + KF C
Sbjct: 2 SSGSSGR-THSGEKPYECYICHARFTQSGTMKMHILQKHTE----------NVAKFHCPH 50
Query: 156 CDYATKDKYNLGTHIKRRHTKE 177
CD K +LG H++++H+
Sbjct: 51 CDTVIARKSDLGVHLRKQHSYS 72
Score = 47.9 bits (115), Expect = 1e-07
Identities = 16/93 (17%), Positives = 24/93 (25%), Gaps = 26/93 (27%)
Query: 279 TFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFPTDFRTK 338
+ HS KP+ C IC F + +H+
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKH---------------------- 39
Query: 339 HMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
+ C C + L VH+RK
Sbjct: 40 ----TENVAKFHCPHCDTVIARKSDLGVHLRKQ 68
Score = 47.5 bits (114), Expect = 1e-07
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 165 NLGTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQILTHGAE--PYHCKYCDKTFTKRMN 222
+ G+ R H+ E C C + ++ H + H +HC +CD ++ +
Sbjct: 2 SSGSS-GRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSD 60
Query: 223 VKTHERMKHENHKPY 237
+ H R +H P
Sbjct: 61 LGVHLRKQHSYSGPS 75
Score = 42.9 bits (102), Expect = 5e-06
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 4/55 (7%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG---KEYPCEQCDRKFTNGYKLKQHMLTH 133
P EC C ++ + HI ++ C CD L H+
Sbjct: 15 PYECYICHARFTQSGTMKMHI-LQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQ 68
Score = 38.3 bits (90), Expect = 2e-04
Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 31/86 (36%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
EC +C ++ + H+ + ++ A
Sbjct: 17 ECYICHARFTQSGTMKMHILQ-KHT------------------------------ENVAK 45
Query: 83 VECSYCGKVLSRKDKLTRHIAAVHSG 108
C +C V++RK L H+ HS
Sbjct: 46 FHCPHCDTVIARKSDLGVHLRKQHSY 71
Score = 36.0 bits (84), Expect = 0.002
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAG 53
CP C V++RKS L H+R H+ P +G
Sbjct: 47 HCPHCDTVIARKSDLGVHLRKQHSYSGPSSG 77
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 54.8 bits (133), Expect = 5e-10
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 174 HTKEYSVLCTQCG--FGCYTNRELEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKH 231
+ V C CG F + L H++ G +PY C C F ++ + H R H
Sbjct: 2 SSGSSGVACEICGKIFRDVYH--LNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS-H 58
Query: 232 --ENHKPYECYICNKILVSRGRLNEHLNQVH 260
KPY C C K LN H+ QVH
Sbjct: 59 DGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 54.0 bits (131), Expect = 9e-10
Identities = 27/97 (27%), Positives = 37/97 (38%), Gaps = 12/97 (12%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSI 140
V C CGK+ L RH HSG K Y C C +F ++ H+ +H
Sbjct: 7 GVACEICGKIFRDVYHLNRHK-LSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH----DG- 60
Query: 141 SIDVISEIKKFKCDQCDYATKDKYNLGTHIKRRHTKE 177
S K + C C +L HIK+ H+
Sbjct: 61 -----SVGKPYICQSCGKGFSRPDHLNGHIKQVHSGP 92
Score = 53.3 bits (129), Expect = 2e-09
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 287 HSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFPTDFR-TKHMLVHDV 345
S + C ICGK F+ Y++N H +H+ +P + C VC F R + H+ HD
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHVRSHDG 60
Query: 346 E--KSHLCFVCGAGFVNDAGLKVHMRK 370
K ++C CG GF L H+++
Sbjct: 61 SVGKPYICQSCGKGFSRPDHLNGHIKQ 87
Score = 51.0 bits (123), Expect = 1e-08
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 265 FECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHT--RIRPTF 322
C++C K +H HS KP+ C +CG FK K ++ H+R+H +P +
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP-Y 66
Query: 323 ECDVC 327
C C
Sbjct: 67 ICQSC 71
Score = 44.8 bits (107), Expect = 2e-06
Identities = 28/127 (22%), Positives = 41/127 (32%), Gaps = 40/127 (31%)
Query: 106 HSG-KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSISIDVISEIKKFKCDQCDYATKDKY 164
SG CE C + F + Y L +H L+H S K + C C K K
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSH------------SGEKPYSCPVCGLRFKRKD 49
Query: 165 NLGTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQILTHGAEPYHCKYCDKTFTKRMNVK 224
+ H R H +PY C+ C K F++ ++
Sbjct: 50 RMSYH-VRSHDGS--------------------------VGKPYICQSCGKGFSRPDHLN 82
Query: 225 THERMKH 231
H + H
Sbjct: 83 GHIKQVH 89
Score = 43.2 bits (103), Expect = 7e-06
Identities = 26/111 (23%), Positives = 38/111 (34%), Gaps = 37/111 (33%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
C +CGK+ L H S H+ G+ P
Sbjct: 9 ACEICGKIFRDVYHLNRHKLS-HS-------GEK-------------------------P 35
Query: 83 VECSYCGKVLSRKDKLTRHIAAVHSG---KEYPCEQCDRKFTNGYKLKQHM 130
C CG RKD+++ H+ H G K Y C+ C + F+ L H+
Sbjct: 36 YSCPVCGLRFKRKDRMSYHV-RSHDGSVGKPYICQSCGKGFSRPDHLNGHI 85
Score = 39.0 bits (92), Expect = 2e-04
Identities = 26/86 (30%), Positives = 29/86 (33%), Gaps = 31/86 (36%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
CPVCG RK ++ H+RS H P
Sbjct: 37 SCPVCGLRFKRKDRMSYHVRS-HDG------------------------------SVGKP 65
Query: 83 VECSYCGKVLSRKDKLTRHIAAVHSG 108
C CGK SR D L HI VHSG
Sbjct: 66 YICQSCGKGFSRPDHLNGHIKQVHSG 91
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 54.4 bits (132), Expect = 7e-10
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 291 KPFVCNI--CGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFP-TDFRTKHMLVHDVEK 347
+P+ C + C + F + H+R HT +P F+C +C + F +D T H+ H EK
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 348 SHLCFVCGAGFVNDAGLKVHMRKH 371
C +CG F K H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 52.1 bits (126), Expect = 4e-09
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 281 KKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFP-TDFRTKH 339
+H+ +H+ KPF C IC ++F ++ H+RTHT +P F CD+C + F +D R +H
Sbjct: 23 TRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRH 81
Query: 340 MLVHDVEK 347
+H +K
Sbjct: 82 TKIHLRQK 89
Score = 49.4 bits (119), Expect = 5e-08
Identities = 32/114 (28%), Positives = 42/114 (36%), Gaps = 37/114 (32%)
Query: 23 ECPV--CGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSR 80
CPV C + S+ L H+R HT K
Sbjct: 6 ACPVESCDRRFSQSGSLTRHIRI-HTG--------------------------QK----- 33
Query: 81 APVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
P +C C + SR D LT HI H+G K + C+ C RKF + K+H H
Sbjct: 34 -PFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 48.2 bits (116), Expect = 1e-07
Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 17/99 (17%)
Query: 82 PVECSY--CGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTHMQKDT 138
P C C + S+ LTRHI +H+G K + C C R F+ L H+ TH +
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE-- 60
Query: 139 SISIDVISEIKKFKCDQCDYATKDKYNLGTHIKRRHTKE 177
K F CD C H + H ++
Sbjct: 61 ----------KPFACDICGRKFARSDERKRH-TKIHLRQ 88
Score = 45.1 bits (108), Expect = 1e-06
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 176 KEYSVLCTQCGFGCYTNRELEEHQILTH-GAEPYHCKYCDKTFTKRMNVKTHERMKHENH 234
+ Y+ C + L H H G +P+ C+ C + F++ ++ TH R H
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGE 60
Query: 235 KPYECYICNKILVSRGRLNEH 255
KP+ C IC + H
Sbjct: 61 KPFACDICGRKFARSDERKRH 81
Score = 40.5 bits (96), Expect = 5e-05
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 9/85 (10%)
Query: 149 KKFKC--DQCDYATKDKYNLGTHIKRRHTKEYSVLCTQCG--FGCYTNRELEEHQILTH- 203
+ + C + CD +L H R HT + C C F + L H TH
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRH-IRIHTGQKPFQCRICMRNFSRSDH--LTTHIR-THT 58
Query: 204 GAEPYHCKYCDKTFTKRMNVKTHER 228
G +P+ C C + F + K H +
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTK 83
Score = 28.6 bits (65), Expect = 0.84
Identities = 6/24 (25%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
C +CG+ +R + H + H
Sbjct: 64 ACDICGRKFARSDERKRHTKI-HL 86
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 54.4 bits (132), Expect = 1e-09
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 265 FECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ C+ C K+ + +HM++H +P+ C +CGK FK+K+++ HM+ HT I+P +EC
Sbjct: 11 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP-YEC 68
Query: 325 DVCHQIFPTDFRTKHMLVHDVEKSHLCFVCGAGFVNDAGL 364
++C + F + H V KS+ +G
Sbjct: 69 NICAKRF-MWRDSFHRHVTSCTKSYEAAKAEQNTTEASGP 107
Score = 50.5 bits (122), Expect = 3e-08
Identities = 26/131 (19%), Positives = 42/131 (32%), Gaps = 32/131 (24%)
Query: 172 RRHTKEYSVLCTQCGFGCYTNRELEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKH 231
+ + C QCG + + H + G PY C C K F + ++ H ++ H
Sbjct: 3 SGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI-H 60
Query: 232 ENHKPYECYICNKILVSRGRLNEHLNQVHLAQRFECKLCHKTIVSEKTFKKHMALHSDAK 291
KPYEC IC K + R + H + S K
Sbjct: 61 TGIKPYECNICAKRFMWRDSFHRH------------------------------VTSCTK 90
Query: 292 PFVCNICGKDF 302
+ ++
Sbjct: 91 SYEAAKAEQNT 101
Score = 47.4 bits (114), Expect = 3e-07
Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 18/106 (16%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSI 140
C CGK + K + RH++ +H G + Y C C +KF + L HM H
Sbjct: 10 LYPCQ-CGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIH------- 60
Query: 141 SIDVISEIKKFKCDQCDYATKDKYNLGTHIKRRHTKEYSVLCTQCG 186
+ IK ++C+ C + + H+ + S +
Sbjct: 61 -----TGIKPYECNICAKRFMWRDSFHRHV---TSCTKSYEAAKAE 98
Score = 44.4 bits (106), Expect = 3e-06
Identities = 25/100 (25%), Positives = 32/100 (32%), Gaps = 37/100 (37%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
C VCGK K LV HM+ HT G P
Sbjct: 39 GCGVCGKKFKMKHHLVGHMKI-HT-------GIK-------------------------P 65
Query: 83 VECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFT 121
EC+ C K +D RH+ S K Y + ++ T
Sbjct: 66 YECNICAKRFMWRDSFHRHV---TSCTKSYEAAKAEQNTT 102
Score = 41.3 bits (98), Expect = 5e-05
Identities = 27/141 (19%), Positives = 42/141 (29%), Gaps = 49/141 (34%)
Query: 27 CGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAPVECS 86
CGK + KS+ HM H G P C
Sbjct: 15 CGKSFTHKSQRDRHMS-MHL-------GLR-------------------------PYGCG 41
Query: 87 YCGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSISIDVI 145
CGK K L H+ +H+G K Y C C ++F +H+ +
Sbjct: 42 VCGKKFKMKHHLVGHM-KIHTGIKPYECNICAKRFMWRDSFHRHVTSCT----------- 89
Query: 146 SEIKKFKCDQCDYATKDKYNL 166
K ++ + + T +
Sbjct: 90 ---KSYEAAKAEQNTTEASGP 107
Score = 31.6 bits (73), Expect = 0.12
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 312 MRTHTRIRPTFECDVCHQIFP-TDFRTKHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRK 370
+ + + C C + F R +HM +H + + C VCG F L HM+
Sbjct: 2 SSGSSGDKL-YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI 59
Query: 371 H 371
H
Sbjct: 60 H 60
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 52.0 bits (125), Expect = 4e-09
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Query: 265 FECKLCHKTIVSEKTFKKHMALHSDA---KPFVCNICGKDFKLKYYVNLHMRTHTRIRPT 321
+C++C T + + H H++ F C CGK F+ V H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 322 FECDVC 327
+
Sbjct: 68 APQESS 73
Score = 51.3 bits (123), Expect = 6e-09
Identities = 16/85 (18%), Positives = 20/85 (23%), Gaps = 25/85 (29%)
Query: 287 HSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFPTDFRTKHMLVHDVE 346
S + C ICG + K +N H R H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVA-------------------------A 36
Query: 347 KSHLCFVCGAGFVNDAGLKVHMRKH 371
C CG F + H K
Sbjct: 37 LRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 50.9 bits (122), Expect = 1e-08
Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 26/94 (27%)
Query: 149 KKFKCDQCDYATKDKYNLGTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQILTHGAEPY 208
+C+ C + + K +L H +R+H + A +
Sbjct: 6 SGLQCEICGFTCRQKASLNWH-QRKHAETV-------------------------AALRF 39
Query: 209 HCKYCDKTFTKRMNVKTHERMKHENHKPYECYIC 242
C++C K F K +V H H
Sbjct: 40 PCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESS 73
Score = 49.7 bits (119), Expect = 2e-08
Identities = 14/82 (17%), Positives = 22/82 (26%), Gaps = 10/82 (12%)
Query: 106 HSG-KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSISIDVISEIKKFKCDQCDYATKDKY 164
SG CE C L H H + + +F C+ C +
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAA---------LRFPCEFCGKRFEKPD 52
Query: 165 NLGTHIKRRHTKEYSVLCTQCG 186
++ H + H G
Sbjct: 53 SVAAHRSKSHPALLLAPQESSG 74
Score = 47.8 bits (114), Expect = 1e-07
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 204 GAEPYHCKYCDKTFTKRMNVKTHERM--KHENHKPYECYICNKILVSRGRLNEHLNQVHL 261
G+ C+ C T ++ ++ H+R + + C C K + H ++ H
Sbjct: 4 GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHP 63
Query: 262 AQRFECK 268
A +
Sbjct: 64 ALLLAPQ 70
Score = 45.1 bits (107), Expect = 1e-06
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHI---AAVHSGKEYPCEQCDRKFTNGYKLKQHMLTH 133
++C CG +K L H A + +PCE C ++F + H
Sbjct: 7 GLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Score = 43.2 bits (102), Expect = 5e-06
Identities = 15/97 (15%), Positives = 25/97 (25%), Gaps = 30/97 (30%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
+C +CG +K+ L H R H
Sbjct: 9 QCEICGFTCRQKASLNWHQRK-HAETVAAL-----------------------------R 38
Query: 83 VECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRK 119
C +CGK + D + H + H ++
Sbjct: 39 FPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSGP 75
Score = 37.0 bits (86), Expect = 8e-04
Identities = 13/71 (18%), Positives = 18/71 (25%), Gaps = 5/71 (7%)
Query: 234 HKPYECYICNKILVSRGRLNEHLNQVHLAQR----FECKLCHKTIVSEKTFKKHMALHSD 289
+C IC + LN H H F C+ C K + H +
Sbjct: 5 SSGLQCEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHP 63
Query: 290 AKPFVCNICGK 300
A
Sbjct: 64 ALLLAPQESSG 74
Score = 31.2 bits (71), Expect = 0.088
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSG 61
C CGK + + +H H ++ + +SG
Sbjct: 40 PCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSGPSSG 78
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 52.0 bits (126), Expect = 4e-09
Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 29/109 (26%)
Query: 208 YHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHLNQVHLAQRFEC 267
+ CK C K+F + + TH + H + +PY C C K + + +H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLI-HSDTRPYPCQYCGKRFHQKSDMKKH-------TF--- 50
Query: 268 KLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
+H+ KP C +CGK F + H R HT
Sbjct: 51 ------------------IHTGEKPHKCQVCGKAFSQSSNLITHSRKHT 81
Score = 49.7 bits (120), Expect = 3e-08
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 265 FECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
F+CK+C K+ T H+ +HSD +P+ C CGK F K + H HT +P +C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP-HKC 60
Query: 325 DVC 327
VC
Sbjct: 61 QVC 63
Score = 48.2 bits (116), Expect = 8e-08
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 182 CTQCG--FGCYTNRELEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
C CG F + L H ++ PY C+YC K F ++ ++K H + H KP++C
Sbjct: 4 CKICGKSFKRSST--LSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFI-HTGEKPHKC 60
Query: 240 YICNKILVSRGRLNEH 255
+C K L H
Sbjct: 61 QVCGKAFSQSSNLITH 76
Score = 47.4 bits (114), Expect = 1e-07
Identities = 31/80 (38%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 293 FVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIF-PTDFRTKHMLVHDVEKSHLC 351
F C ICGK FK ++ H+ H+ RP + C C + F KH +H EK H C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 352 FVCGAGFVNDAGLKVHMRKH 371
VCG F + L H RKH
Sbjct: 61 QVCGKAFSQSSNLITHSRKH 80
Score = 45.9 bits (110), Expect = 6e-07
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 151 FKCDQCDYATKDKYNLGTHIKRRHTKEYSVLCTQCG--FGCYTNRELEEHQILTHGAEPY 208
F C C + K L TH H+ C CG F ++ +++H + G +P+
Sbjct: 2 FDCKICGKSFKRSSTLSTH-LLIHSDTRPYPCQYCGKRFHQKSD--MKKHTFIHTGEKPH 58
Query: 209 HCKYCDKTFTKRMNVKTHERM 229
C+ C K F++ N+ TH R
Sbjct: 59 KCQVCGKAFSQSSNLITHSRK 79
Score = 45.9 bits (110), Expect = 6e-07
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 15/93 (16%)
Query: 84 ECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSISI 142
+C CGK R L+ H+ +HS + YPC+ C ++F +K+H H
Sbjct: 3 DCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIH--------- 52
Query: 143 DVISEIKKFKCDQCDYATKDKYNLGTHIKRRHT 175
+ K KC C A NL TH R+HT
Sbjct: 53 ---TGEKPHKCQVCGKAFSQSSNLITH-SRKHT 81
Score = 45.5 bits (109), Expect = 7e-07
Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 35/112 (31%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
+C +CGK R S L +H+ H+ P
Sbjct: 3 DCKICGKSFKRSSTLSTHLL-IHS-------DTR-------------------------P 29
Query: 83 VECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
C YCGK +K + +H +H+G K + C+ C + F+ L H H
Sbjct: 30 YPCQYCGKRFHQKSDMKKH-TFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
Score = 29.3 bits (67), Expect = 0.44
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C VCGK S+ S L++H R HT
Sbjct: 59 KCQVCGKAFSQSSNLITHSR-KHT 81
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 51.8 bits (125), Expect = 5e-09
Identities = 25/109 (22%), Positives = 36/109 (33%), Gaps = 27/109 (24%)
Query: 207 PYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHLNQVHLAQRFE 266
C KT+TK ++K H R H KPY C +
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHC--------------------------D 39
Query: 267 CKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTH 315
C +H H+ +PF C C + F ++ LHM+ H
Sbjct: 40 WDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 50.2 bits (121), Expect = 2e-08
Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 37/115 (32%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
+ CGK ++ S L +H+R+ HT G+ P
Sbjct: 9 DYAGCGKTYTKSSHLKAHLRT-HT-------GEK-------------------------P 35
Query: 83 VECSY--CGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTHM 134
C + CG +R D+LTRH H+G + + C++CDR F+ L HM H
Sbjct: 36 YHCDWDGCGWKFARSDELTRHYR-KHTGHRPFQCQKCDRAFSRSDHLALHMKRHF 89
Score = 47.9 bits (115), Expect = 1e-07
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Query: 287 HSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDV--CHQIFP-TDFRTKHMLVH 343
+ CGK + ++ H+RTHT +P + CD C F +D T+H H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKP-YHCDWDGCGWKFARSDELTRHYRKH 60
Query: 344 DVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
+ C C F L +HM++H
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 44.4 bits (106), Expect = 2e-06
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 173 RHTKEYSVLCTQCGFGCYTNRELEEHQILTHGAEPYHCKY--CDKTFTKRMNVKTHERMK 230
+ T ++ CG + L+ H G +PYHC + C F + + H R K
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-K 59
Query: 231 HENHKPYECYICNK 244
H H+P++C C++
Sbjct: 60 HTGHRPFQCQKCDR 73
Score = 41.4 bits (98), Expect = 3e-05
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 19/102 (18%)
Query: 74 HKKPKSRAPVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC--EQCDRKFTNGYKLKQHM 130
+ + CGK ++ L H+ H+G K Y C + C KF +L +H
Sbjct: 2 RTATH---TCDYAGCGKTYTKSSHLKAHL-RTHTGEKPYHCDWDGCGWKFARSDELTRHY 57
Query: 131 LTHMQKDTSISIDVISEIKKFKCDQCDYATKDKYNLGTHIKR 172
H + + F+C +CD A +L H+KR
Sbjct: 58 RKH------------TGHRPFQCQKCDRAFSRSDHLALHMKR 87
Score = 34.0 bits (79), Expect = 0.011
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 148 IKKFKCDQCDYATKDKYNLGTHIKRRHTKE--YSVLCTQCGFGCYTNRELEEHQILTH-G 204
C +L H R HT E Y CG+ + EL H H G
Sbjct: 5 THTCDYAGCGKTYTKSSHLKAH-LRTHTGEKPYHCDWDGCGWKFARSDELTRHYR-KHTG 62
Query: 205 AEPYHCKYCDKTFTKRMNVKTHER 228
P+ C+ CD+ F++ ++ H +
Sbjct: 63 HRPFQCQKCDRAFSRSDHLALHMK 86
Score = 31.7 bits (73), Expect = 0.075
Identities = 18/80 (22%), Positives = 26/80 (32%), Gaps = 15/80 (18%)
Query: 109 KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSISIDVISEIKKFKCD--QCDYATKDKYNL 166
C + +T LK H+ TH + K + CD C + L
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTH------------TGEKPYHCDWDGCGWKFARSDEL 53
Query: 167 GTHIKRRHTKEYSVLCTQCG 186
H R+HT C +C
Sbjct: 54 TRH-YRKHTGHRPFQCQKCD 72
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 51.4 bits (124), Expect = 6e-09
Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 28/101 (27%)
Query: 204 GAEPYHCKY--CDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHLNQVHL 261
G+ C + C + F+ R + H++ +H + K + C
Sbjct: 4 GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSC---------------------- 41
Query: 262 AQRFECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDF 302
C K+ +K K+HM LHSD + ++C G
Sbjct: 42 ----PEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 46.8 bits (112), Expect = 3e-07
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 287 HSDAKPFVCNI--CGKDFKLKYYVNLHMR-THTRIRPTFECD--VCHQIFPTDF-RTKHM 340
S + C+ CG+ F + Y+N H + H + F C C + F +HM
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKS-FSCPEPACGKSFNFKKHLKEHM 60
Query: 341 LVHDVEKSHLCFVCGAGF 358
+H + ++C G
Sbjct: 61 KLHSDTRDYICEFSGPSS 78
Score = 44.5 bits (106), Expect = 2e-06
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 17/80 (21%)
Query: 82 PVECSY--CGKVLSRKDKLTRHIAAVHSG-KEYPCEQ--CDRKFTNGYKLKQHMLTHMQK 136
+ C + CG++ S + L H H K + C + C + F LK+HM H
Sbjct: 7 GMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDT 66
Query: 137 DTSISIDVISEIKKFKCDQC 156
+ + C+
Sbjct: 67 ------------RDYICEFS 74
Score = 43.3 bits (103), Expect = 4e-06
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Query: 265 FECKL--CHKTIVSEKTFKKHM-ALHSDAKPFVCN--ICGKDFKLKYYVNLHMRTHTRIR 319
C C + + + H H K F C CGK F K ++ HM+ H+ R
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 320 PTFECDVC 327
+ C+
Sbjct: 68 D-YICEFS 74
Score = 37.5 bits (88), Expect = 5e-04
Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 8/75 (10%)
Query: 149 KKFKCD--QCDYATKDKYNLGTHIKRRHTKEYSVLCTQ--CG--FGCYTNRELEEHQILT 202
CD C ++ L H K +H + S C + CG F + L+EH L
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKH--LKEHMKLH 63
Query: 203 HGAEPYHCKYCDKTF 217
Y C++ +
Sbjct: 64 SDTRDYICEFSGPSS 78
Score = 36.8 bits (86), Expect = 9e-04
Identities = 21/101 (20%), Positives = 32/101 (31%), Gaps = 36/101 (35%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
+ P CG++ S + L H + H H+K
Sbjct: 11 DFPGCGRIFSNRQYLNHHKKYQHI---------------------------HQKS----- 38
Query: 83 VECSY--CGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKF 120
C CGK + K L H+ +HS ++Y CE
Sbjct: 39 FSCPEPACGKSFNFKKHLKEHMK-LHSDTRDYICEFSGPSS 78
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 51.3 bits (122), Expect = 2e-08
Identities = 15/119 (12%), Positives = 33/119 (27%), Gaps = 24/119 (20%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHLN 257
+ + GA + CK C + + + H M H + + +
Sbjct: 10 YGSIFTGASKFRCKDCSAAYDTLVELTVH--MNETGHYRDDNHETDN------------- 54
Query: 258 QVHLAQRFECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
+ +++ + K C CG F+ +++HM
Sbjct: 55 ---------NNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 50.1 bits (119), Expect = 4e-08
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 5/102 (4%)
Query: 276 SEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMR-THTRIRPTFECDVCHQIFPTD 334
S + K + ++ + A F C C + + +HM T E D + +
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62
Query: 335 FRTKHMLVH----DVEKSHLCFVCGAGFVNDAGLKVHMRKHQ 372
R + +L D +K C CG F + L VHM K +
Sbjct: 63 PRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 45.1 bits (106), Expect = 2e-06
Identities = 18/90 (20%), Positives = 27/90 (30%), Gaps = 6/90 (6%)
Query: 149 KKFKCDQCDYATKDKYNLGTHIK----RRHTKEYSVLCTQCGFGCYTNRELEEHQILTHG 204
KF+C C A L H+ R + + R L E +
Sbjct: 18 SKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDA 77
Query: 205 AEPYHCKYCDKTFTKRMNVKTHERMKHENH 234
+ C YC +F ++ H M H
Sbjct: 78 QKVLKCMYCGHSFESLQDLSVH--MIKTKH 105
Score = 41.7 bits (97), Expect = 4e-05
Identities = 16/93 (17%), Positives = 28/93 (30%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
C C +L HM DNN+ + L+ K ++
Sbjct: 21 RCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKV 80
Query: 83 VECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQ 115
++C YCG L+ H+ ++
Sbjct: 81 LKCMYCGHSFESLQDLSVHMIKTKHYQKVSGPS 113
Score = 37.8 bits (87), Expect = 9e-04
Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 8/97 (8%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSIS 141
C C +LT H+ + D + + +
Sbjct: 19 KFRCKDCSAAYDTLVELTVHMNETGH-YRDDNHETDNNNPKRWSKPRKRSLLEMEGKE-- 75
Query: 142 IDVISEIKKFKCDQCDYATKDKYNLGTH-IKRRHTKE 177
K KC C ++ + +L H IK +H ++
Sbjct: 76 ----DAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQK 108
Score = 34.7 bits (79), Expect = 0.010
Identities = 15/111 (13%), Positives = 34/111 (30%), Gaps = 8/111 (7%)
Query: 93 SRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSISIDVISEIKKFK 152
S + + ++ C+ C + +L HM +
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNH-------ETDN 54
Query: 153 CDQCDYATKDKYNLGTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQILTH 203
+ ++ K +L + + + + C CG + ++L H I T
Sbjct: 55 NNPKRWSKPRKRSLLEM-EGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 50.2 bits (121), Expect = 2e-08
Identities = 18/112 (16%), Positives = 28/112 (25%), Gaps = 33/112 (29%)
Query: 195 LEEHQILTH-GAEPYHCKYCDKTFTKRMNVKTHERM---KHENHKPYECYICNKILVSRG 250
TH G +PY C +CDKTF ++ + H + + + C C K R
Sbjct: 3 SGSSGR-THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 251 RLNEHLNQVHLAQRFECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDF 302
+ H + G
Sbjct: 62 TMARH-------AD---------------------NCAGPDGVEGENSGPSS 85
Score = 48.3 bits (116), Expect = 1e-07
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 4/84 (4%)
Query: 279 TFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPT---FECDVCHQIFP-TD 334
+ H+ KP+ C+ C K F+ K +++H + + F C C + F +
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 335 FRTKHMLVHDVEKSHLCFVCGAGF 358
+H G
Sbjct: 62 TMARHADNCAGPDGVEGENSGPSS 85
Score = 44.4 bits (106), Expect = 2e-06
Identities = 18/99 (18%), Positives = 27/99 (27%), Gaps = 31/99 (31%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
C C K +K L H + + + P
Sbjct: 17 ACSHCDKTFRQKQLLDMHFKR-YHD-------------------------PNFVPA---A 47
Query: 83 VECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKF 120
CS CGK +R++ + RH A +G E
Sbjct: 48 FVCSKCGKTFTRRNTMARH-ADNCAGPDGVEGENSGPSS 85
Score = 41.7 bits (99), Expect = 2e-05
Identities = 18/87 (20%), Positives = 24/87 (27%), Gaps = 12/87 (13%)
Query: 105 VHSG-KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSISIDVISEIKKFKCDQCDYATKDK 163
H+G K Y C CD+ F L H + D F C +C +
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYH--------DPNFVPAAFVCSKCGKTFTRR 60
Query: 164 YNLGTHIKRRHTKEYSVLCTQCG--FG 188
+ H V G G
Sbjct: 61 NTMARH-ADNCAGPDGVEGENSGPSSG 86
Score = 41.0 bits (97), Expect = 4e-05
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-----KEYPCEQCDRKFTNGYKLKQHMLTH 133
P CS+C K +K L H + + C +C + FT + +H
Sbjct: 15 PYACSHCDKTFRQKQLLDMH-FKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNC 70
Score = 30.6 bits (70), Expect = 0.16
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 6/37 (16%)
Query: 10 EAIEPKPSKYIKVECPVCGKVLSRKSKLVSHMRSFHT 46
P + C CGK +R++ + H +
Sbjct: 41 PNFVPAA--F---VCSKCGKTFTRRNTMARHADN-CA 71
Score = 27.1 bits (61), Expect = 3.2
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 337 TKHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
H EK + C C F L +H +++
Sbjct: 4 GSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRY 38
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 49.5 bits (119), Expect = 2e-08
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 202 THGAE-PYHCKYCDKTFTKRMNVKTHER-MKHENHKPYECYICNKILVSRGRLNEHLNQV 259
T E Y CK C + +T N H N K Y C C K + + H+ +
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Query: 260 H 260
H
Sbjct: 64 H 64
Score = 47.5 bits (114), Expect = 1e-07
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 265 FECKLCHKTIVSEKTFKKHM--ALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRI 318
+ CK+C + F +H + + K + C C K+F K + H++ +I
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 45.6 bits (109), Expect = 4e-07
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 82 PVECSYCGKVLSRKDKLTRHI-AAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
C C +V + RH + K YPC C ++FT + H+
Sbjct: 10 TYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 42.2 bits (100), Expect = 7e-06
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 170 IKRRHTKEYSVLCTQCG--FGCYTNRELEEHQ-ILTHGAE-PYHCKYCDKTFTKRMNVKT 225
++ E++ C C + +N H Y C +C K FT++ N+
Sbjct: 1 MEFTKEGEHTYRCKVCSRVYTHISN--FCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTA 58
Query: 226 HERMKHE 232
H ++ H+
Sbjct: 59 HVKIIHK 65
Score = 37.9 bits (89), Expect = 3e-04
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 287 HSDAKPFVCNICGKDFKLKYYVNLHMRT--HTRIRPTFECDVCHQIFP-TDFRTKHMLVH 343
+ C +C + + H T ++ + C C + F D T H+ +
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKV-YPCPFCFKEFTRKDNMTAHVKII 63
Score = 36.8 bits (86), Expect = 6e-04
Identities = 16/80 (20%), Positives = 24/80 (30%), Gaps = 31/80 (38%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
C VC +V + S H + H + K
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSH----------------------------KRNVK---V 40
Query: 83 VECSYCGKVLSRKDKLTRHI 102
C +C K +RKD +T H+
Sbjct: 41 YPCPFCFKEFTRKDNMTAHV 60
Score = 35.6 bits (83), Expect = 0.002
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 12/72 (16%)
Query: 106 HSG-KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSISIDVISEIKKFKCDQCDYATKDKY 164
G Y C+ C R +T+ +H +T + +K + C C K
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHK----------RNVKVYPCPFCFKEFTRKD 54
Query: 165 NLGTHIKRRHTK 176
N+ H+ + K
Sbjct: 55 NMTAHV-KIIHK 65
Score = 31.0 bits (71), Expect = 0.079
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFH 45
CP C K +RK + +H++ H
Sbjct: 42 PCPFCFKEFTRKDNMTAHVKIIH 64
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 49.4 bits (119), Expect = 3e-08
Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 14/75 (18%)
Query: 104 AVHSG-KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSISIDVISEIKKFKCDQCDYATKD 162
+ S C +C ++ L+ H H + FKC+ C + TK
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIH------------CTDRPFKCNYCSFDTKQ 49
Query: 163 KYNLGTHIKRRHTKE 177
NL H ++ +
Sbjct: 50 PSNLSKH-MKKFHGD 63
Score = 45.6 bits (109), Expect = 6e-07
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 287 HSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFPTDFR-TKHMLVHDV 345
S P C+ C K + +H R H RP F+C+ C +KHM
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMKKFHG 62
Query: 346 EKS 348
+ S
Sbjct: 63 DMS 65
Score = 45.2 bits (108), Expect = 7e-07
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 265 FECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
+C C + S+ + H +H +PF CN C D K ++ HM+
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Score = 44.0 bits (105), Expect = 2e-06
Identities = 16/92 (17%), Positives = 23/92 (25%), Gaps = 30/92 (32%)
Query: 149 KKFKCDQCDYATKDKYNLGTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQILTHGAEPY 208
KC +C Y+ K L H +R H P+
Sbjct: 8 HPEKCSECSYSCSSKAALRIH-ERIHC----------------------------TDRPF 38
Query: 209 HCKYCDKTFTKRMNVKTHERMKHENHKPYECY 240
C YC + N+ H + K
Sbjct: 39 KCNYCSFDTKQPSNLSKHMK-KFHGDMSGPSS 69
Score = 44.0 bits (105), Expect = 2e-06
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
P +CS C S K L H +H + + C C L +HM
Sbjct: 9 PEKCSECSYSCSSKAALRIHE-RIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 40.6 bits (96), Expect = 4e-05
Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 202 THGAE-PYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHL 256
+ + P C C + + + ++ HER H +P++C C+ L++H+
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHER-IHCTDRPFKCNYCSFDTKQPSNLSKHM 57
Score = 32.1 bits (74), Expect = 0.039
Identities = 17/92 (18%), Positives = 25/92 (27%), Gaps = 35/92 (38%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
+C C S K+ L H R H D P
Sbjct: 11 KCSECSYSCSSKAALRIHERI-HC-------TDR-------------------------P 37
Query: 83 VECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
+C+YC + L++H+ G P
Sbjct: 38 FKCNYCSFDTKQPSNLSKHM-KKFHGDMSGPS 68
Score = 27.1 bits (61), Expect = 2.0
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 342 VHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
C C + A L++H R H
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIH 32
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 49.0 bits (118), Expect = 4e-08
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 195 LEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNE 254
H +TH +PY C C +F + N+ +H+ + H KPY C IC L
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTV-HTGEKPYRCNICGAQFNRPANLKT 63
Query: 255 H 255
H
Sbjct: 64 H 64
Score = 43.2 bits (103), Expect = 4e-06
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 165 NLGTHIKRRHTKEYSVLCTQCG--FGCYTNRELEEHQILTHGAEPYHCKYCDKTFTKRMN 222
+ H + C +C F N L H+ + G +PY C C F + N
Sbjct: 4 HHHHH-SHMTHSDKPYKCDRCQASFRYKGN--LASHKTVHTGEKPYRCNICGAQFNRPAN 60
Query: 223 VKTHERMKHENHKPY 237
+KTH R+ H KPY
Sbjct: 61 LKTHTRI-HSGEKPY 74
Score = 42.4 bits (101), Expect = 7e-06
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 265 FECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
++C C + + H +H+ KP+ CNICG F + H R H+
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHS 69
Score = 41.7 bits (99), Expect = 2e-05
Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
P +C C K L H VH+G K Y C C +F LK H H
Sbjct: 17 PYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 41.3 bits (98), Expect = 2e-05
Identities = 23/90 (25%), Positives = 30/90 (33%), Gaps = 28/90 (31%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFPTDFRTKHML 341
H + KP+ C+ C F+ K + H HT
Sbjct: 7 HHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTG------------------------ 42
Query: 342 VHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
EK + C +CGA F A LK H R H
Sbjct: 43 ----EKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 34.4 bits (80), Expect = 0.006
Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 15/81 (18%)
Query: 98 LTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSISIDVISEIKKFKCDQC 156
H + + K Y C++C F L H H + K ++C+ C
Sbjct: 5 HHHH-SHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGE------------KPYRCNIC 51
Query: 157 DYATKDKYNLGTHIKRRHTKE 177
NL TH R H+ E
Sbjct: 52 GAQFNRPANLKTH-TRIHSGE 71
Score = 28.6 bits (65), Expect = 0.68
Identities = 16/79 (20%), Positives = 20/79 (25%), Gaps = 33/79 (41%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
+C C K L SH HT G+ P
Sbjct: 19 KCDRCQASFRYKGNLASHKTV-HT-------GEK-------------------------P 45
Query: 83 VECSYCGKVLSRKDKLTRH 101
C+ CG +R L H
Sbjct: 46 YRCNICGAQFNRPANLKTH 64
Score = 27.8 bits (63), Expect = 1.1
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
C +CG +R + L +H R H+
Sbjct: 47 RCNICGAQFNRPANLKTHTR-IHS 69
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 48.0 bits (115), Expect = 2e-07
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 37/114 (32%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
+ P C KV ++ S L +H+R+ HT G+ P
Sbjct: 19 DYPGCTKVYTKSSHLKAHLRT-HT-------GEK-------------------------P 45
Query: 83 VECSY--CGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
+C++ C +R D+LTRH H+G K + C C+R F+ L HM H
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYR-KHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 48.0 bits (115), Expect = 2e-07
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
Query: 279 TFKKHMALHSDAKPFVCNI--CGKDFKLKYYVNLHMRTHTRIRPTFEC--DVCHQIFP-T 333
+ + C+ C K + ++ H+RTHT +P ++C + C F +
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKP-YKCTWEGCDWRFARS 60
Query: 334 DFRTKHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKHQ 372
D T+H H K C VC F L +HM++HQ
Sbjct: 61 DELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 43.8 bits (104), Expect = 4e-06
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 17/95 (17%)
Query: 84 ECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC--EQCDRKFTNGYKLKQHMLTHMQKDTSI 140
+ C KV ++ L H+ H+G K Y C E CD +F +L +H H
Sbjct: 19 DYPGCTKVYTKSSHLKAHL-RTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH------- 70
Query: 141 SIDVISEIKKFKCDQCDYATKDKYNLGTHIKRRHT 175
+ K F+C C+ + +L H +RH
Sbjct: 71 -----TGAKPFQCGVCNRSFSRSDHLALH-MKRHQ 99
Score = 38.4 bits (90), Expect = 4e-04
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 209 HCKYCDKTFTKRMNVKTHERMKHENHKPYECYI--CNKILVSRGRLNEHLNQVHLAQR-F 265
C K +TK ++K H R H KPY+C C+ L H + H + F
Sbjct: 19 DYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHY-RKHTGAKPF 76
Query: 266 ECKLCHKTIVSEKTFKKHMALHSD 289
+C +C+++ HM H +
Sbjct: 77 QCGVCNRSFSRSDHLALHMKRHQN 100
Score = 37.6 bits (88), Expect = 7e-04
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 202 TH-GAEPYHCKY--CDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHL 256
TH G +PY C + CD F + + H R KH KP++C +CN+ L H+
Sbjct: 39 THTGEKPYKCTWEGCDWRFARSDELTRHYR-KHTGAKPFQCGVCNRSFSRSDHLALHM 95
Score = 30.3 bits (69), Expect = 0.28
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 165 NLGTHIKRRHTKEYSVLCT--QCGFGCYTNRELEEHQILTH-GAEPYHCKYCDKTFTKRM 221
+L H R HT E CT C + + EL H H GA+P+ C C+++F++
Sbjct: 32 HLKAH-LRTHTGEKPYKCTWEGCDWRFARSDELTRHYR-KHTGAKPFQCGVCNRSFSRSD 89
Query: 222 NVKTHERMKHEN 233
++ H + +H+N
Sbjct: 90 HLALHMK-RHQN 100
Score = 27.6 bits (62), Expect = 2.4
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTS 47
+C VC + SR L HM+ H +
Sbjct: 77 QCGVCNRSFSRSDHLALHMKR-HQN 100
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 45.6 bits (109), Expect = 3e-07
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNG 123
P C CGK SR D L HI VH+ + + C+ ++G
Sbjct: 12 PYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSSG 54
Score = 42.2 bits (100), Expect = 6e-06
Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 202 THGAE-PYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNK 244
+ PY C+ C K F++ ++ H + H + +P++C +
Sbjct: 6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVS 49
Score = 41.0 bits (97), Expect = 1e-05
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHM-RTHTRIRPTFECDVC 327
+ S KP++C CGK F ++N H+ + HT RP +C V
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERP-HKCQVW 47
Score = 32.6 bits (75), Expect = 0.017
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 231 HENHKPYECYICNKILVSRGRLNEHLNQVHLAQR-FECKLCHKT 273
KPY C C K LN H+ QVH ++R +C++
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSG 50
Score = 32.2 bits (74), Expect = 0.020
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
C CGK SR L H++ HT
Sbjct: 14 ICQSCGKGFSRPDHLNGHIKQVHT 37
Score = 31.4 bits (72), Expect = 0.047
Identities = 12/41 (29%), Positives = 15/41 (36%)
Query: 146 SEIKKFKCDQCDYATKDKYNLGTHIKRRHTKEYSVLCTQCG 186
S K + C C +L HIK+ HT E C
Sbjct: 8 SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWV 48
Score = 29.9 bits (68), Expect = 0.15
Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 2/53 (3%)
Query: 167 GTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQILTH-GAEPYHCKYCDKTFT 218
G+ + +C CG G L H H P+ C+ +
Sbjct: 1 GSS-GSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 44.4 bits (106), Expect = 1e-06
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 207 PYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHLNQVH 260
+ C+ C + F ++ ++K H R H N KPY C +CN+ R L H ++H
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 41.3 bits (98), Expect = 1e-05
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVC 327
+ FVC +C + F + ++ H R+HT +P + C +C
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLC 36
Score = 40.9 bits (97), Expect = 2e-05
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHM 130
C C + +R++ L RH H+ K YPC C+R FT L +H
Sbjct: 2 SFVCEVCTRAFARQEHLKRHY-RSHTNEKPYPCGLCNRAFTRRDLLIRHA 50
Score = 39.8 bits (94), Expect = 5e-05
Identities = 22/86 (25%), Positives = 29/86 (33%), Gaps = 33/86 (38%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
C VC + +R+ L H RS HT K P
Sbjct: 4 VCEVCTRAFARQEHLKRHYRS-HT-----------------------------NEK---P 30
Query: 83 VECSYCGKVLSRKDKLTRHIAAVHSG 108
C C + +R+D L RH +HSG
Sbjct: 31 YPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 37.5 bits (88), Expect = 4e-04
Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 265 FECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHM-RTHT 316
F C++C + ++ K+H H++ KP+ C +C + F + + H + H+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 34.4 bits (80), Expect = 0.004
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Query: 109 KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSISIDVISEIKKFKCDQCDYATKDKYNLGT 168
+ + CE C R F LK+H +H + K + C C+ A + L
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNE------------KPYPCGLCNRAFTRRDLLIR 48
Query: 169 HIKRRHTKEYS 179
H ++ H+
Sbjct: 49 HAQKIHSGNLG 59
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 44.6 bits (105), Expect = 2e-06
Identities = 18/94 (19%), Positives = 27/94 (28%), Gaps = 20/94 (21%)
Query: 231 HENHKPYECYICNKILVSRGRLNEHLNQVHLAQRFECKLCHKTIVSEKTFKKHMALHSDA 290
E C++ + L H+ H V H+ +
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEH--------------VGGPEQNNHVCYWEE- 64
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
C GK FK KY + H+R HT +
Sbjct: 65 ----CPREGKSFKAKYKLVNHIRVHTGEKS-GPS 93
Score = 42.6 bits (100), Expect = 1e-05
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 9/61 (14%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG----KEYPCE-----QCDRKFTNGYKLKQHMLT 132
C + S +L H+ H G + C + + F YKL H+
Sbjct: 25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV 84
Query: 133 H 133
H
Sbjct: 85 H 85
Score = 40.0 bits (93), Expect = 1e-04
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 20/93 (21%)
Query: 203 HGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHLNQVHLA 262
K CD+TF+ + TH M+H ++C
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC-------------------- 60
Query: 263 QRFECKLCHKTIVSEKTFKKHMALHSDAKPFVC 295
EC K+ ++ H+ +H+ K
Sbjct: 61 YWEECPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 34.6 bits (79), Expect = 0.007
Identities = 14/91 (15%), Positives = 21/91 (23%), Gaps = 21/91 (23%)
Query: 149 KKFKCDQCDYATKDKYNLGTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQILTHGAEPY 208
CD + L TH+ H C +
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWE-------------------- 63
Query: 209 HCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
C K+F + + H R+ H K
Sbjct: 64 ECPREGKSFKAKYKLVNHIRV-HTGEKSGPS 93
Score = 34.2 bits (78), Expect = 0.012
Identities = 20/92 (21%), Positives = 26/92 (28%), Gaps = 26/92 (28%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
C + S +LV+H+ H +
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPE------------------------QNNHVCYW 62
Query: 83 VECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
EC GK K KL HI VH+G K P
Sbjct: 63 EECPREGKSFKAKYKLVNHI-RVHTGEKSGPS 93
Score = 30.7 bits (69), Expect = 0.16
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 106 HSGKEYPCEQCDRKFTNGYKLKQHML-THMQKDTSISIDVISEIKKFKCDQCDYATKDKY 164
+ P + CDR F+ ++L H+ H+ + +C + + K KY
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNN----HVCYWEECPREGKSFKAKY 76
Query: 165 NLGTHIKRRHTKEYSVLCT 183
L HI R HT E S +
Sbjct: 77 KLVNHI-RVHTGEKSGPSS 94
Score = 30.7 bits (69), Expect = 0.20
Identities = 13/75 (17%), Positives = 22/75 (29%), Gaps = 9/75 (12%)
Query: 286 LHSDAKPFVCNICGKDFKLKYYVNLHM-RTHTRIRPT-------FECDVCHQIFPTDFR- 336
+ C + F + + H+ H EC + F ++
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 337 TKHMLVHDVEKSHLC 351
H+ VH EKS
Sbjct: 79 VNHIRVHTGEKSGPS 93
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 43.2 bits (101), Expect = 3e-06
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 264 RFECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
++ C+ C KKH+ H+D +P+ C C FK K + HM++
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53
Score = 39.3 bits (91), Expect = 7e-05
Identities = 13/50 (26%), Positives = 19/50 (38%)
Query: 84 ECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTH 133
C CG + L +HI + Y C C+ F L +HM +
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 36.2 bits (83), Expect = 8e-04
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 182 CTQCGFGCYTNRELEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHER 228
C +CG L++H PYHC YC+ +F + N+ H +
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 34.3 bits (78), Expect = 0.004
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 208 YHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHL 256
Y C+ C K +K H R H + +PY C CN ++G L +H+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRT-HTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 34.3 bits (78), Expect = 0.004
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 293 FVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFPTDFR-TKHMLVHDVEK 347
++C CG K + H+RTHT +RP + C C+ F T TKHM K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 33.9 bits (77), Expect = 0.007
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 13/67 (19%)
Query: 111 YPCEQCDRKFTNGYKLKQHMLTHMQKDTSISIDVISEIKKFKCDQCDYATKDKYNLGTHI 170
Y CE+C + LK+H+ TH + + C C+++ K K NL H+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDV------------RPYHCTYCNFSFKTKGNLTKHM 49
Query: 171 KRRHTKE 177
+
Sbjct: 50 -KSKAHS 55
Score = 32.0 bits (72), Expect = 0.025
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 150 KFKCDQCDYATKDKYNLGTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQ 199
K+ C++C K L HI R HT CT C F T L +H
Sbjct: 1 KYICEECGIRXKKPSMLKKHI-RTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 27.4 bits (60), Expect = 1.1
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 322 FECDVC-HQIFPTDFRTKHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
+ C+ C + KH+ H + + C C F L HM+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 43.2 bits (103), Expect = 5e-06
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 195 LEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNE 254
+ Y C C K+F+ ++ H R H KPY+C C K + R L
Sbjct: 6 SGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRT-HTGEKPYKCDECGKAFIQRSHLIG 64
Query: 255 H 255
H
Sbjct: 65 H 65
Score = 42.0 bits (100), Expect = 1e-05
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 165 NLGTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQILTHGAEPYHCKYCDKTFTKRMNVK 224
+ G + + + C +CG + +L +H+ G +PY C C K F +R ++
Sbjct: 5 SSGRS-EWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLI 63
Query: 225 THERMKHENHKPYE 238
H R+ H P
Sbjct: 64 GHHRV-HTGSGPSS 76
Score = 40.9 bits (97), Expect = 3e-05
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVC 327
+ + + + C+ CGK F ++ H RTHT +P ++CD C
Sbjct: 8 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDEC 52
Score = 38.2 bits (90), Expect = 3e-04
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
+C CGK S L++H H+G K Y C++C + F L H H
Sbjct: 18 RYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 37.8 bits (89), Expect = 4e-04
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 265 FECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
++C C K+ KH H+ KP+ C+ CGK F + ++ H R HT
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
Score = 32.0 bits (74), Expect = 0.044
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Query: 311 HMRTHTRIRPTFECDVCHQIFPTDFR-TKHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMR 369
R ++CD C + F +KH H EK + C CG F+ + L H R
Sbjct: 9 SEWQQRERRR-YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR 67
Query: 370 KH 371
H
Sbjct: 68 VH 69
Score = 29.3 bits (67), Expect = 0.33
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 15/81 (18%)
Query: 98 LTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSISIDVISEIKKFKCDQC 156
R + Y C++C + F++ L +H TH + K +KCD+C
Sbjct: 6 SGRS-EWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE------------KPYKCDEC 52
Query: 157 DYATKDKYNLGTHIKRRHTKE 177
A + +L H R HT
Sbjct: 53 GKAFIQRSHLIGH-HRVHTGS 72
Score = 28.9 bits (66), Expect = 0.44
Identities = 19/79 (24%), Positives = 24/79 (30%), Gaps = 33/79 (41%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
+C CGK S S L H R HT +K P
Sbjct: 20 KCDECGKSFSHSSDLSKHRR-THTG---------------------------EK-----P 46
Query: 83 VECSYCGKVLSRKDKLTRH 101
+C CGK ++ L H
Sbjct: 47 YKCDECGKAFIQRSHLIGH 65
Score = 27.4 bits (62), Expect = 1.9
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CGK ++S L+ H R HT
Sbjct: 48 KCDECGKAFIQRSHLIGHHR-VHT 70
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 43.1 bits (102), Expect = 5e-06
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 82 PVECSY--CGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
P C C + SR D+LTRHI +H+G K + C C R F+ L H+ TH
Sbjct: 19 PYACPVESCDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 40.8 bits (96), Expect = 3e-05
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 291 KPFVCNI--CGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFP-TDFRTKHMLVH 343
+P+ C + C + F + H+R HT +P F+C +C + F +D T H+ H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHIRTH 72
Score = 40.0 bits (94), Expect = 6e-05
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 281 KKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
+H+ +H+ KPF C IC ++F ++ H+RTHT
Sbjct: 38 TRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 33.8 bits (78), Expect = 0.008
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 207 PYHCKY--CDKTFTKRMNVKTHERMKHENHKPYECYICNK 244
PY C CD+ F++ + H R H KP++C IC +
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMR 57
Score = 32.7 bits (75), Expect = 0.021
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 15/69 (21%)
Query: 109 KEYPC--EQCDRKFTNGYKLKQHMLTHMQKDTSISIDVISEIKKFKCDQCDYATKDKYNL 166
+ Y C E CDR+F+ +L +H+ H + K F+C C +L
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIH------------TGQKPFQCRICMRNFSRSDHL 65
Query: 167 GTHIKRRHT 175
THI R HT
Sbjct: 66 TTHI-RTHT 73
Score = 31.9 bits (73), Expect = 0.046
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 309 NLHMRTHTRIRPTFECDV--CHQIFP-TDFRTKHMLVHDVEKSHLCFVCGAGFVNDAGLK 365
NL ++RP + C V C + F +D T+H+ +H +K C +C F L
Sbjct: 8 NLLNYVVPKMRP-YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLT 66
Query: 366 VHMRKH 371
H+R H
Sbjct: 67 THIRTH 72
Score = 30.7 bits (70), Expect = 0.11
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 165 NLGTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQILTHGAEPYHCKYCDKTFTKRMNVK 224
NL ++ + Y+ C + EL H + G +P+ C+ C + F++ ++
Sbjct: 8 NLLNYV-VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLT 66
Query: 225 THER 228
TH R
Sbjct: 67 THIR 70
Score = 25.7 bits (57), Expect = 7.1
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C +C + SR L +H+R+ HT
Sbjct: 51 QCRICMRNFSRSDHLTTHIRT-HT 73
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 6e-06
Identities = 53/367 (14%), Positives = 101/367 (27%), Gaps = 108/367 (29%)
Query: 7 SDTEAIEPKPSKYIKVECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQI 66
+ +A + C + + +R ++ + + T+ + S ++
Sbjct: 254 QNAKAW-----NAFNLSCKIL--LTTRFKQVTDFLSAATTTHISL-----DHHSMTLTPD 301
Query: 67 QTMLM----LDHKK---P---KSRAPVECSYCGKVLS------------RKDKLTRHIAA 104
+ + LD + P + P S + + DKLT I +
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 105 VHSGKEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSISIDVISEI---KKFKCDQCDYATK 161
+ E P E RK + L+ I ++S I
Sbjct: 362 SLNVLE-PAEY--RKM---FD----RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 162 DKYNLGTHIKRRHTKE--YSVLCTQCGFGCYTNRELEEHQILTHGAEPY--HCKYCDKTF 217
KY+L +++ KE S+ E H+ + + Y +
Sbjct: 412 HKYSL---VEK-QPKESTISIPSIYLELKVKLENEYALHRSIV---DHYNIPKTFDSDDL 464
Query: 218 TKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHLNQVHLAQRF------------ 265
+ Y + I G HL + +R
Sbjct: 465 IP---------------PYLDQYFYSHI----GH---HLKNIEHPERMTLFRMVFLDFRF 502
Query: 266 -ECKLCHK------------TIVSEKTFKKHMALHSDA-KPFVCNICGKDFKLKYYVNLH 311
E K+ H T+ K +K ++ + + V I DF K NL
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI--LDFLPKIEENLI 560
Query: 312 MRTHTRI 318
+T +
Sbjct: 561 CSKYTDL 567
Score = 37.5 bits (86), Expect = 0.007
Identities = 57/401 (14%), Positives = 116/401 (28%), Gaps = 126/401 (31%)
Query: 15 KPSKYIKVECPV-CGK-VLS----RKSKLVSHM--RSFHTSVTPEAGGDNNDTSGHMSQI 66
+P+K + ++ + GK ++ K+ M + F ++ + N + +
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL-----KNCNSPETVLEML 202
Query: 67 QTMLMLDHKKPKSRAPVECSYCGKVLSRKDKLTRHIAAVHSGKEYP-C-----EQCDRKF 120
Q +L SR+ + ++ S + +L R + + K Y C + K
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS----KPYENCLLVLLNVQNAKA 258
Query: 121 TNGYKLK-QHMLTHMQKDTSISIDVISEIKKFKCDQCDYATKDKYNLGTHIKRRHTKEYS 179
N + L + +LT + + D +S A + H T +
Sbjct: 259 WNAFNLSCKILLT--TRFKQV-TDFLS------------AATTTHISLDHHSMTLTPDEV 303
Query: 180 V-LCTQCGFGCYTNRELEE--HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHK- 235
L Y + ++ ++LT P ++ R + T + KH N
Sbjct: 304 KSL-----LLKYLDCRPQDLPREVLTTN--PRRLSIIAESI--RDGLATWDNWKHVNCDK 354
Query: 236 -------------PYE---CY-----------------------------------ICNK 244
P E + +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 245 ILVSRGRLNEHLNQVH-LAQRFECKL-----CHKTIVSEKTFKKHMALHSDAKPFVCNIC 298
LV + + E + + + KL H++IV K P++
Sbjct: 415 SLVEK-QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ-- 471
Query: 299 GKDFKLKY---YVNLHMRTHTRIRPTFECDVCHQIFPTDFR 336
Y ++ H++ I + +F DFR
Sbjct: 472 -------YFYSHIGHHLKN---IEHPERMTLFRMVF-LDFR 501
Score = 31.7 bits (71), Expect = 0.42
Identities = 26/190 (13%), Positives = 56/190 (29%), Gaps = 66/190 (34%)
Query: 205 AEPYHCKYCDKTFTKRMNVKTHERMKHENH--KPYECYICNKILVSRGR----LNEHLNQ 258
P + + RM ++ +R+ ++N Y VSR + L + L +
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN--------VSRLQPYLKLRQALLE 146
Query: 259 --------VH---------LA------QRFECKL-----------CHKTIVSEKTFKKHM 284
+ +A + +CK+ C+ E +
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP---ETVLEMLQ 203
Query: 285 ALHSDAKPFVCNICGKDFKLKYYVN---LHMRTHTRIRPTFEC-----DVCH----QIFP 332
L P + +K ++ +R + +P C +V + F
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF- 262
Query: 333 TDFRTKHMLV 342
+ K +L+
Sbjct: 263 -NLSCK-ILL 270
Score = 30.2 bits (67), Expect = 1.4
Identities = 37/212 (17%), Positives = 71/212 (33%), Gaps = 63/212 (29%)
Query: 114 EQCDRKFTNGYKL-KQHMLTHMQKDTSISI-DVISEIKKFKCDQCDYATKDKYNLGTHIK 171
+ N KL K ++ K+++ISI + E+K K + ++Y L H
Sbjct: 401 KSDVMVVVN--KLHKYSLVEKQPKESTISIPSIYLELKV-KLE-------NEYAL--H-- 446
Query: 172 RRHTKEYSVLCTQCGFGCYTNRELEEHQILTHGAEPYHCK--------------YCDKTF 217
R Y++ T + +H +H K + D F
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYL--DQYFYSHIG--HHLKNIEHPERMTLFRMVFLDFRF 502
Query: 218 TKRMNVKTHERMKHENH---------------KPYECYICNKILVSRGRLNEHLNQVHLA 262
++ +++H++ K Y+ YIC+ +N L+
Sbjct: 503 LEQ-------KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD----- 550
Query: 263 QRFECKLCHKTIVSEKTFKKHMALHSDAKPFV 294
F K+ I S+ T +AL ++ +
Sbjct: 551 --FLPKIEENLICSKYTDLLRIALMAEDEAIF 580
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 41.4 bits (98), Expect = 1e-05
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 287 HSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
S KPF C+ C K F K Y+ +H +TH +P
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP-SGP 41
Score = 35.2 bits (82), Expect = 0.001
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 204 GAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +P+ C C+K F+ + + H++ H KP
Sbjct: 7 GEKPFGCSCCEKAFSSKSYLLVHQQT-HAEEKPSGP 41
Score = 29.4 bits (67), Expect = 0.14
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
C C K S KS L+ H ++ H
Sbjct: 12 GCSCCEKAFSSKSYLLVHQQT-HA 34
Score = 29.0 bits (66), Expect = 0.26
Identities = 11/33 (33%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
P CS C K S K L H H+ K
Sbjct: 10 PFGCSCCEKAFSSKSYLLVH-QQTHAEEKPSGP 41
Score = 26.7 bits (60), Expect = 1.7
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 104 AVHSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
+ SG K + C C++ F++ L H TH
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 40.9 bits (97), Expect = 1e-05
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
KP+ C ICG F+ + H+R HT
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHT 35
Score = 35.6 bits (83), Expect = 9e-04
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 202 THGAE-PYHCKYCDKTFTKRMNVKTHERMKHENHKPY 237
+ G E PY C+ C F +K+H R+ H P
Sbjct: 5 SSGGEKPYPCEICGTRFRHLQTLKSHLRI-HTGSGPS 40
Score = 33.2 bits (77), Expect = 0.007
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 103 AAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
+ G K YPCE C +F + LK H+ H
Sbjct: 3 SGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 30.9 bits (71), Expect = 0.042
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 339 HMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
EK + C +CG F + LK H+R H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 27.8 bits (63), Expect = 0.52
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
C +CG L SH+R HT
Sbjct: 13 PCEICGTRFRHLQTLKSHLR-IHT 35
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 41.7 bits (99), Expect = 1e-05
Identities = 16/56 (28%), Positives = 22/56 (39%)
Query: 265 FECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRP 320
+ C C K +H +H+ KP+ C CGK F + H R HT
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPS 70
Score = 41.3 bits (98), Expect = 2e-05
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFPTDFR-TKHM 340
+HS KP+ C CGK F + H R HT +P ++C C + F + H
Sbjct: 4 GSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFSQNSGLINHQ 62
Query: 341 LVHDVEKSH 349
+H S
Sbjct: 63 RIHTSGPSS 71
Score = 40.5 bits (96), Expect = 3e-05
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 171 KRRHTKEYSVLCTQCG--FGCYTNRELEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHER 228
H+ E C +CG F + L +HQ + G +PY C C K F++ + H+R
Sbjct: 6 SGIHSGEKPYGCVECGKAFSRSSI--LVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Query: 229 MKHENHKPY 237
+ H +
Sbjct: 64 I-HTSGPSS 71
Score = 39.8 bits (94), Expect = 6e-05
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
P C CGK SR L +H VH+G K Y C +C + F+ L H H
Sbjct: 14 PYGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 30.9 bits (71), Expect = 0.091
Identities = 22/79 (27%), Positives = 25/79 (31%), Gaps = 33/79 (41%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
C CGK SR S LV H R HT G+ P
Sbjct: 16 GCVECGKAFSRSSILVQHQR-VHT-------GEK-------------------------P 42
Query: 83 VECSYCGKVLSRKDKLTRH 101
+C CGK S+ L H
Sbjct: 43 YKCLECGKAFSQNSGLINH 61
Score = 30.1 bits (69), Expect = 0.16
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 15/81 (18%)
Query: 98 LTRHIAAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSISIDVISEIKKFKCDQC 156
+ + +HSG K Y C +C + F+ L QH H + K +KC +C
Sbjct: 2 SSGS-SGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE------------KPYKCLEC 48
Query: 157 DYATKDKYNLGTHIKRRHTKE 177
A L H +R HT
Sbjct: 49 GKAFSQNSGLINH-QRIHTSG 68
Score = 27.8 bits (63), Expect = 1.3
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CGK S+ S L++H R HT
Sbjct: 44 KCLECGKAFSQNSGLINHQR-IHT 66
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 41.8 bits (99), Expect = 2e-05
Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 18/96 (18%)
Query: 84 ECSY--CGKVLSRKDKLTRHIAAVHSG-KEYPCEQ--CDRKFTNGYKLKQHMLTHMQKDT 138
C + CGK + ++L H H+ Y C CD++F+ +LK+H H
Sbjct: 3 VCHFENCGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH----- 56
Query: 139 SISIDVISEIKKFKCDQCDYATKDKYNLGTHIKRRH 174
+ K D C + K H+ H
Sbjct: 57 -------AGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 41.1 bits (97), Expect = 3e-05
Identities = 22/111 (19%), Positives = 31/111 (27%), Gaps = 30/111 (27%)
Query: 208 YHCKY--CDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHLNQVHLAQRF 265
Y C + C K F K +K H+ H PYEC
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQF-SHTQQLPYEC-------------------------- 34
Query: 266 ECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLK-YYVNLHMRTH 315
+ C K K+H +H+ + C K Y+ H
Sbjct: 35 PHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 36.4 bits (85), Expect = 0.001
Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 293 FVCNI--CGKDFKLKYYVNLHMRTHTRIRPTFECDV--CHQIFPT-DFRTKHMLVHDVEK 347
+VC+ CGK FK + +H +HT+ P +EC C + F +H VH
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLP-YECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 348 SHLCFVCGAGFVNDAGLKVHMRK 370
C H+ +
Sbjct: 61 CKKDDSCSFVGKTWTLYLKHVAE 83
Score = 33.4 bits (77), Expect = 0.018
Identities = 26/117 (22%), Positives = 35/117 (29%), Gaps = 42/117 (35%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
CGK + ++L H S HT P
Sbjct: 5 HFENCGKAFKKHNQLKVHQFS-HTQQL--------------------------------P 31
Query: 83 VECSY--CGKVLSRKDKLTRHIAAVHSG----KEYPCEQCDRKFTNGYKLKQHMLTH 133
EC + C K S +L RH VH+G K+ C + +T LK H
Sbjct: 32 YECPHEGCDKRFSLPSRLKRH-EKVHAGYPCKKDDSCSFVGKTWTL--YLKHVAECH 85
Score = 26.0 bits (58), Expect = 5.5
Identities = 16/85 (18%), Positives = 23/85 (27%), Gaps = 5/85 (5%)
Query: 151 FKCD--QCDYATKDKYNLGTHIKRRHTKEYSVLCTQ--CGFGCYTNRELEEHQILTHGAE 206
+ C C A K L H + HT++ C C L+ H+ + G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 207 PYHCKYCDKTFTKRMNVKTHERMKH 231
C H H
Sbjct: 61 CKKDDSCSFVGKTWTLYLKHVAECH 85
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 2e-05
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRP 320
+ + KPF C CG +F + H+R+H R P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDP 40
Score = 37.6 bits (88), Expect = 2e-04
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 202 THGAE-PYHCKYCDKTFTKRMNVKTHERMKHENHKPYECY 240
+ E P+ CK C F+ ++ H R HE P
Sbjct: 6 SGTGEKPFQCKECGMNFSWSCSLFKHLRS-HERTDPSGPS 44
Score = 29.1 bits (66), Expect = 0.25
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CG S L H+RS H
Sbjct: 14 QCKECGMNFSWSCSLFKHLRS-HE 36
Score = 27.2 bits (61), Expect = 1.1
Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 311 HMRTHTRIRPTFECDVCHQIF--PTDFRTKHMLVHDVEKSHLCF 352
+ T +P F+C C F KH+ H+
Sbjct: 3 SGSSGTGEKP-FQCKECGMNFSWSCSLF-KHLRSHERTDPSGPS 44
Score = 27.2 bits (61), Expect = 1.1
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 106 HSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
+G K + C++C F+ L +H+ +H
Sbjct: 7 GTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 25.2 bits (56), Expect = 5.5
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 265 FECKLCHKTIVSEKTFKKHMALHSDAKPFVC 295
F+CK C + KH+ H P
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 25.2 bits (56), Expect = 5.8
Identities = 10/33 (30%), Positives = 11/33 (33%)
Query: 339 HMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
EK C CG F L H+R H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 2e-05
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C K+FTK+ + H+++ H KP
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQI-HTGEKPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + KP+ C+ICGK F K +++H + HT +P
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKP-SGP 43
Score = 27.5 bits (62), Expect = 0.78
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
EC +CGK ++KS+L H + HT
Sbjct: 14 ECSICGKSFTKKSQLHVHQQI-HT 36
Score = 27.1 bits (61), Expect = 1.3
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
P ECS CGK ++K +L H +H+G K
Sbjct: 12 PYECSICGKSFTKKSQLHVH-QQIHTGEKPSGP 43
Score = 26.0 bits (58), Expect = 2.8
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 338 KHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
EK + C +CG F + L VH + H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 25.6 bits (57), Expect = 3.5
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 225 THERMKHENHKPYECYICNKILVSRGRLNEH 255
+ KPYEC IC K + +L+ H
Sbjct: 2 SSGSS-GTGEKPYECSICGKSFTKKSQLHVH 31
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 40.2 bits (95), Expect = 2e-05
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +P+ C +C K+F + N+ TH+R+ H K
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRI-HTGEKSGPS 43
Score = 36.8 bits (86), Expect = 4e-04
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + KPF C CGK F+ K + H R HT +
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKS-GPS 43
Score = 29.0 bits (66), Expect = 0.24
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
P EC++CGK K L H +H+G K P
Sbjct: 12 PFECTHCGKSFRAKGNLVTH-QRIHTGEKSGPS 43
Score = 27.9 bits (63), Expect = 0.56
Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
EC CGK K LV+H R HT
Sbjct: 14 ECTHCGKSFRAKGNLVTHQR-IHT 36
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 40.2 bits (95), Expect = 2e-05
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C K F + ++ H R H KP
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 32.9 bits (76), Expect = 0.009
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
EC CGK + + L+ H R +HT
Sbjct: 14 ECIECGKAFIQNTSLIRHWRYYHT 37
Score = 32.9 bits (76), Expect = 0.010
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
P EC CGK + L RH H+G K
Sbjct: 12 PYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 30.6 bits (70), Expect = 0.060
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMR-THTRIRPTFEC 324
+ + KP+ C CGK F + H R HT +P
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKP-SGP 44
Score = 26.4 bits (59), Expect = 2.3
Identities = 10/36 (27%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 225 THERMKHENHKPYECYICNKILVSRGRLNEHLNQVH 260
+ KPYEC C K + L H H
Sbjct: 2 SSGSS-GTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 3e-05
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ S +P+ CN CGK+F ++ H++ H R +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKS-SGP 43
Score = 32.9 bits (76), Expect = 0.011
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 202 THGAE-PYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
+ E PY C C K F + ++ H + H K
Sbjct: 6 SGSGERPYGCNECGKNFGRHSHLIEHLKR-HFREKSSGP 43
Score = 28.6 bits (65), Expect = 0.30
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
C CGK R S L+ H++ H
Sbjct: 14 GCNECGKNFGRHSHLIEHLKR-HF 36
Score = 27.9 bits (63), Expect = 0.53
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
P C+ CGK R L H+ H K
Sbjct: 12 PYGCNECGKNFGRHSHLIEHL-KRHFREKSSGP 43
Score = 26.7 bits (60), Expect = 1.8
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 105 VHSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
SG + Y C +C + F L +H+ H
Sbjct: 6 SGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 39.8 bits (94), Expect = 3e-05
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + KP+VCN CGK F+ K Y+ +H RTHT
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESG-PSS 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C K F + + H R H
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRT-HTGESGPSS 43
Score = 27.4 bits (62), Expect = 0.71
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
C CGK KS L+ H R+ HT
Sbjct: 14 VCNECGKAFRSKSYLIIHTRT-HT 36
Score = 25.5 bits (57), Expect = 3.7
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
P C+ CGK K L H H+G
Sbjct: 12 PYVCNECGKAFRSKSYLIIH-TRTHTGESGPSS 43
Score = 24.8 bits (55), Expect = 7.8
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 338 KHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
K ++C CG F + + L +H R H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 39.8 bits (94), Expect = 3e-05
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
+ S K C+ CG+ F LK ++N H R HT
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHT 36
Score = 32.9 bits (76), Expect = 0.010
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 202 THGAE-PYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
+ + + C C + FT + ++ H+R+ H KP
Sbjct: 6 SGSSTKSHQCHECGRGFTLKSHLNQHQRI-HTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.83
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CG+ + KS L H R HT
Sbjct: 14 QCHECGRGFTLKSHLNQHQR-IHT 36
Score = 26.7 bits (60), Expect = 1.4
Identities = 12/34 (35%), Positives = 13/34 (38%)
Query: 338 KHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
KSH C CG GF + L H R H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 26.0 bits (58), Expect = 3.2
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 82 PVECSYCGKVLSRKDKLTRH 101
+C CG+ + K L +H
Sbjct: 12 SHQCHECGRGFTLKSHLNQH 31
Score = 25.6 bits (57), Expect = 4.0
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 106 HSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
S K + C +C R FT L QH H
Sbjct: 7 GSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 25.6 bits (57), Expect = 4.7
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 231 HENHKPYECYICNKILVSRGRLNEH 255
+ K ++C+ C + + LN+H
Sbjct: 7 GSSTKSHQCHECGRGFTLKSHLNQH 31
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 3e-05
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECD 325
+ + KP+ CN+CGK F L ++N H+R HT+
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETL-SGPS 44
Score = 36.0 bits (84), Expect = 7e-04
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 197 EHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C K F ++ H R+ H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRV-HTQETLSGP 43
Score = 28.6 bits (65), Expect = 0.36
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
C VCGK + L H+R HT
Sbjct: 14 SCNVCGKAFVLSAHLNQHLR-VHT 36
Score = 27.1 bits (61), Expect = 1.1
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCE 114
P C+ CGK L +H VH+
Sbjct: 12 PYSCNVCGKAFVLSAHLNQH-LRVHTQETLSGPS 44
Score = 26.7 bits (60), Expect = 1.5
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 338 KHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
EK + C VCG FV A L H+R H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 24.8 bits (55), Expect = 7.2
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 226 HERMKHENHKPYECYICNKILVSRGRLNEH 255
KPY C +C K V LN+H
Sbjct: 3 SGSS-GTGEKPYSCNVCGKAFVLSAHLNQH 31
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 41.8 bits (97), Expect = 4e-05
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 4/88 (4%)
Query: 196 EEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEH 255
E Y C+ C+ + + +HER+ C C+ S EH
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNA---AVCPYCSLRFFSPELKQEH 61
Query: 256 LNQVHLAQRFECKLCHKTIVSEKTFKKH 283
++ ++ C C +T S + +H
Sbjct: 62 ESK-CEYKKLTCLECMRTFKSSFSIWRH 88
Score = 41.4 bits (96), Expect = 4e-05
Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 15/104 (14%)
Query: 74 HKKPKSRAPVECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTH 133
+++ +C C LS + H + C C +F + ++H
Sbjct: 8 ASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRN--AAVCPYCSLRFFSPELKQEHESKC 65
Query: 134 MQKDTSISIDVISEIKKFKCDQCDYATKDKYNLGTHIKRRHTKE 177
E KK C +C K +++ H H +
Sbjct: 66 -------------EYKKLTCLECMRTFKSSFSIWRHQVEVHNQN 96
Score = 40.7 bits (94), Expect = 8e-05
Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
Query: 232 ENHKPYECYICNKILVSRGRLNEHLNQVHLAQRFECKLCHKTIVSEKTFKKHMALHSDAK 291
EN + Y+C +CN L S H C C S + ++H + + K
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHERLCR--NAAVCPYCSLRFFSPELKQEHES-KCEYK 68
Query: 292 PFVCNICGKDFKLKYYVNLH 311
C C + FK + + H
Sbjct: 69 KLTCLECMRTFKSSFSIWRH 88
Score = 36.8 bits (84), Expect = 0.002
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 4/82 (4%)
Query: 254 EHLNQVHLAQRFECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMR 313
+ V + ++C+LC+ + S H L +A VC C F H
Sbjct: 6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEHES 63
Query: 314 THTRIRPTFECDVCHQIFPTDF 335
+ C C + F + F
Sbjct: 64 KCEYKK--LTCLECMRTFKSSF 83
Score = 33.0 bits (74), Expect = 0.033
Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 4/86 (4%)
Query: 149 KKFKCDQCDYATKDKYNLGTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQILTHGAEPY 208
+ ++C C+ G+H + +C C ++ +EH+ +
Sbjct: 15 EVYQCRLCNAKLSSLLEQGSHERLCRNA---AVCPYCSLRFFSPELKQEHES-KCEYKKL 70
Query: 209 HCKYCDKTFTKRMNVKTHERMKHENH 234
C C +TF ++ H+ H +
Sbjct: 71 TCLECMRTFKSSFSIWRHQVEVHNQN 96
Score = 32.2 bits (72), Expect = 0.062
Identities = 13/77 (16%), Positives = 20/77 (25%), Gaps = 3/77 (3%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFPTDFRTKHMLVHDVEKSHL 350
+ + C +C H R R C C F + + K
Sbjct: 15 EVYQCRLCNAKLSSLLEQGSHERLC---RNAAVCPYCSLRFFSPELKQEHESKCEYKKLT 71
Query: 351 CFVCGAGFVNDAGLKVH 367
C C F + + H
Sbjct: 72 CLECMRTFKSSFSIWRH 88
Score = 31.0 bits (69), Expect = 0.16
Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 16/104 (15%)
Query: 101 HIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSISIDVISEIKKFKCDQCDYAT 160
+ V + + Y C C+ K ++ + H C C
Sbjct: 7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRN--------------AAVCPYCSLRF 52
Query: 161 KDKYNLGTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQILTHG 204
H + + C +C ++ + HQ+ H
Sbjct: 53 FSPELKQEH--ESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHN 94
Score = 30.6 bits (68), Expect = 0.27
Identities = 12/75 (16%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Query: 64 SQIQTMLMLDHKKPKSRAPVECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNG 123
+++ ++L + R C YC + H + K+ C +C R F +
Sbjct: 24 AKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHESK-CEYKKLTCLECMRTFKSS 82
Query: 124 YKLKQHMLTHMQKDT 138
+ + +H + ++
Sbjct: 83 FSIWRHQVEVHNQNN 97
Score = 26.8 bits (58), Expect = 5.4
Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 8/85 (9%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAP 82
+C +C LS + SH R + + L +H+
Sbjct: 18 QCRLCNAKLSSLLEQGSHERLCRNAAVCPYCS--------LRFFSPELKQEHESKCEYKK 69
Query: 83 VECSYCGKVLSRKDKLTRHIAAVHS 107
+ C C + + RH VH+
Sbjct: 70 LTCLECMRTFKSSFSIWRHQVEVHN 94
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 4e-05
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G PY C C K FT R N+ H+++ H KP
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKI-HTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + +P++C +CGK F + + H + HT +P
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKP-SGP 43
Score = 28.6 bits (65), Expect = 0.30
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
C VCGK + +S L+ H + HT
Sbjct: 14 ICTVCGKAFTDRSNLIKHQK-IHT 36
Score = 27.1 bits (61), Expect = 1.1
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
P C+ CGK + + L +H +H+G K
Sbjct: 12 PYICTVCGKAFTDRSNLIKH-QKIHTGEKPSGP 43
Score = 24.8 bits (55), Expect = 7.4
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 339 HMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
E+ ++C VCG F + + L H + H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 5e-05
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C K F+ R ++ TH+ + H KP
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAI-HTGKKPSGP 43
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + KP+ CN CGK F ++ + H HT +P
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKP-SGP 43
Score = 28.3 bits (64), Expect = 0.43
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCE 114
P EC+ CGK S + LT H A+H+G K
Sbjct: 12 PYECNQCGKAFSVRSSLTTH-QAIHTGKKPSGPS 44
Score = 27.1 bits (61), Expect = 1.0
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
EC CGK S +S L +H HT
Sbjct: 14 ECNQCGKAFSVRSSLTTHQA-IHT 36
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 5e-05
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C+ C K + + N+ H+++ H +P
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKV-HTGERPSGP 43
Score = 36.4 bits (85), Expect = 5e-04
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + KP+ C CGK + K+ +++H + HT RP
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERP-SGP 43
Score = 26.7 bits (60), Expect = 1.5
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
P +C CGK + K L H VH+G +
Sbjct: 12 PYKCEKCGKGYNSKFNLDMH-QKVHTGERPSGP 43
Score = 26.3 bits (59), Expect = 2.2
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CGK + K L H + HT
Sbjct: 14 KCEKCGKGYNSKFNLDMHQK-VHT 36
Score = 25.6 bits (57), Expect = 4.1
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 338 KHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
EK + C CG G+ + L +H + H
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 25.2 bits (56), Expect = 6.5
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 105 VHSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
+G K Y CE+C + + + + L H H
Sbjct: 6 SGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 24.8 bits (55), Expect = 8.9
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 225 THERMKHENHKPYECYICNKILVSRGRLNEH 255
+ KPY+C C K S+ L+ H
Sbjct: 2 SSGSS-GTGEKPYKCEKCGKGYNSKFNLDMH 31
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 5e-05
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C K+F K+ + H+R+ H P
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRI-HTGENPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + KP+ C+ CGK F K +++H R HT P
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENP-SGP 43
Score = 27.9 bits (63), Expect = 0.66
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
P ECS CGK +K +L H +H+G
Sbjct: 12 PYECSDCGKSFIKKSQLHVH-QRIHTGENPSGP 43
Score = 27.1 bits (61), Expect = 1.3
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
EC CGK +KS+L H R HT
Sbjct: 14 ECSDCGKSFIKKSQLHVHQRI-HT 36
Score = 26.3 bits (59), Expect = 1.9
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 225 THERMKHENHKPYECYICNKILVSRGRLNEH 255
+ KPYEC C K + + +L+ H
Sbjct: 2 SSGSS-GTGEKPYECSDCGKSFIKKSQLHVH 31
Score = 26.0 bits (58), Expect = 2.6
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 338 KHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
EK + C CG F+ + L VH R H
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.5 bits (93), Expect = 5e-05
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 197 EHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +P+ C+ C K FT+ ++ +H+R+ H KP
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRV-HTGEKPSGP 43
Score = 36.4 bits (85), Expect = 5e-04
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ S KPF C CGK F +++ H R HT +P
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKP-SGP 43
Score = 26.7 bits (60), Expect = 1.4
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CGK ++ S L SH R HT
Sbjct: 14 QCEECGKRFTQNSHLHSHQR-VHT 36
Score = 26.7 bits (60), Expect = 1.6
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
P +C CGK ++ L H VH+G K
Sbjct: 12 PFQCEECGKRFTQNSHLHSH-QRVHTGEKPSGP 43
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 39.4 bits (93), Expect = 5e-05
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 202 THGAE-PYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
+ PY C C+K+F+ ++ + H+RM H KP
Sbjct: 6 SGAGVNPYKCSQCEKSFSGKLRLLVHQRM-HTREKPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + P+ C+ C K F K + +H R HTR +P
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKP-SGP 43
Score = 27.5 bits (62), Expect = 0.86
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQ 115
P +CS C K S K +L H +H+ K
Sbjct: 12 PYKCSQCEKSFSGKLRLLVH-QRMHTREKPSGPSS 45
Score = 27.1 bits (61), Expect = 1.0
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C C K S K +L+ H R HT
Sbjct: 14 KCSQCEKSFSGKLRLLVHQRM-HT 36
Score = 26.0 bits (58), Expect = 3.1
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 106 HSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
+G Y C QC++ F+ +L H H
Sbjct: 7 GAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 24.8 bits (55), Expect = 8.8
Identities = 8/33 (24%), Positives = 9/33 (27%)
Query: 339 HMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
+ C C F L VH R H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.1 bits (92), Expect = 5e-05
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + KP+ C+ CGK F K Y+ +HMRTH+ +P
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKP-SGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C K F+ + + H R H KP
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRT-HSGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.46
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
C CGK S KS L+ HMR+ H+
Sbjct: 14 GCSECGKAFSSKSYLIIHMRT-HS 36
Score = 28.3 bits (64), Expect = 0.46
Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCE 114
P CS CGK S K L H+ HSG K
Sbjct: 12 PYGCSECGKAFSSKSYLIIHM-RTHSGEKPSGPS 44
Score = 24.8 bits (55), Expect = 7.4
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 339 HMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
EK + C CG F + + L +HMR H
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 39.1 bits (92), Expect = 6e-05
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY+CK C K+F + H+R+ H KP
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRV-HSGEKPSGP 43
Score = 34.1 bits (79), Expect = 0.004
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + KP+ C CGK F+ + H R H+ +P
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKP-SGP 43
Score = 28.7 bits (65), Expect = 0.32
Identities = 12/35 (34%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQ 115
P C CGK L +H VHSG K
Sbjct: 12 PYNCKECGKSFRWASCLLKH-QRVHSGEKPSGPSS 45
Score = 26.4 bits (59), Expect = 2.1
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
C CGK S L+ H R H+
Sbjct: 14 NCKECGKSFRWASCLLKHQR-VHS 36
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.1 bits (92), Expect = 6e-05
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY CK C K FT++ ++ H++ H KP
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKT-HTGEKPSGP 43
Score = 36.7 bits (86), Expect = 5e-04
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + KP+ C +C K F K ++ H +THT +P
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKP-SGP 43
Score = 27.5 bits (62), Expect = 0.83
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCE 114
P EC C K ++K L +H H+G K
Sbjct: 12 PYECKVCSKAFTQKAHLAQH-QKTHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.95
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
EC VC K ++K+ L H ++ HT
Sbjct: 14 ECKVCSKAFTQKAHLAQHQKT-HT 36
Score = 25.6 bits (57), Expect = 4.4
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 225 THERMKHENHKPYECYICNKILVSRGRLNEH 255
+ KPYEC +C+K + L +H
Sbjct: 2 SSGSS-GTGEKPYECKVCSKAFTQKAHLAQH 31
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 7e-05
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C K FT R N+ TH+++ H KP
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKI-HTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.005
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
+ + KP+ C CGK F + + H + HT
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHT 36
Score = 27.5 bits (62), Expect = 0.88
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
C CGK + +S L +H + HT
Sbjct: 14 RCAECGKAFTDRSNLFTHQK-IHT 36
Score = 27.1 bits (61), Expect = 1.2
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCE 114
P C+ CGK + + L H +H+G K
Sbjct: 12 PYRCAECGKAFTDRSNLFTH-QKIHTGEKPSGPS 44
Score = 25.5 bits (57), Expect = 4.0
Identities = 9/31 (29%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 225 THERMKHENHKPYECYICNKILVSRGRLNEH 255
+ KPY C C K R L H
Sbjct: 2 SSGSS-GTGEKPYRCAECGKAFTDRSNLFTH 31
Score = 24.8 bits (55), Expect = 8.2
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 105 VHSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
+G K Y C +C + FT+ L H H
Sbjct: 6 SGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 7e-05
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 197 EHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G Y C C K F ++ + H+R+ H KP
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRI-HRGEKPSGP 43
Score = 36.0 bits (84), Expect = 7e-04
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + + + C+ CGK F K +++H R H +P
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKP-SGP 43
Score = 27.5 bits (62), Expect = 0.72
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
ECS CGK +K L+ H +H G K
Sbjct: 12 HYECSECGKAFIQKSTLSMH-QRIHRGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.7
Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
EC CGK +KS L H R H
Sbjct: 14 ECSECGKAFIQKSTLSMHQR-IHR 36
Score = 24.8 bits (55), Expect = 7.5
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 338 KHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
E+ + C CG F+ + L +H R H
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 24.8 bits (55), Expect = 8.6
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 225 THERMKHENHKPYECYICNKILVSRGRLNEH 255
+ + YEC C K + + L+ H
Sbjct: 2 SSGSS-GTGERHYECSECGKAFIQKSTLSMH 31
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 8e-05
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ S KP+ CN CGK F K ++ H RTHT +P
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKP-SGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C KTF+++ + H+R H KP
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRT-HTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.60
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
C CGK S+KS L +H R+ HT
Sbjct: 14 GCNECGKTFSQKSILSAHQRT-HT 36
Score = 27.5 bits (62), Expect = 0.90
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQ 115
P C+ CGK S+K L+ H H+G K
Sbjct: 12 PYGCNECGKTFSQKSILSAH-QRTHTGEKPSGPSS 45
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 8e-05
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C K F+ R ++ H+R+ H KP
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRI-HSGKKPSGP 43
Score = 35.9 bits (84), Expect = 8e-04
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + KP+ C++CGK F + +++H R H+ +P
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKP-SGP 43
Score = 28.2 bits (64), Expect = 0.42
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCE 114
P ECS CGK S + L+ H +HSG K
Sbjct: 12 PYECSVCGKAFSHRQSLSVH-QRIHSGKKPSGPS 44
Score = 27.9 bits (63), Expect = 0.63
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
EC VCGK S + L H R H+
Sbjct: 14 ECSVCGKAFSHRQSLSVHQR-IHS 36
Score = 24.8 bits (55), Expect = 7.4
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 226 HERMKHENHKPYECYICNKILVSRGRLNEH 255
KPYEC +C K R L+ H
Sbjct: 3 SGSS-GTGEKPYECSVCGKAFSHRQSLSVH 31
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 9e-05
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C K FT R N+ H+++ H KP
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKI-HTKQKPSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + KP++C CGK F ++ + H + HT+ +P
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKP-SGP 43
Score = 27.5 bits (62), Expect = 0.73
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
C CGK + +S L+ H + HT
Sbjct: 14 ICAECGKAFTIRSNLIKHQK-IHT 36
Score = 27.5 bits (62), Expect = 0.86
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCE 114
P C+ CGK + + L +H +H+ K
Sbjct: 12 PYICAECGKAFTIRSNLIKH-QKIHTKQKPSGPS 44
Score = 24.4 bits (54), Expect = 9.4
Identities = 9/31 (29%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 225 THERMKHENHKPYECYICNKILVSRGRLNEH 255
+ KPY C C K R L +H
Sbjct: 2 SSGSS-GTGEKPYICAECGKAFTIRSNLIKH 31
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 9e-05
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C K FT++ + H++ H +
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQS-HTGERHSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + KP+ C+ CGK F K +++H ++HT R
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERH-SGP 43
Score = 27.9 bits (63), Expect = 0.65
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CGK +RKS L H +S HT
Sbjct: 14 KCSDCGKAFTRKSGLHIHQQS-HT 36
Score = 26.7 bits (60), Expect = 1.4
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
P +CS CGK +RK L H H+G +
Sbjct: 12 PYKCSDCGKAFTRKSGLHIH-QQSHTGERHSGP 43
Score = 24.8 bits (55), Expect = 7.0
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 338 KHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
EK + C CG F +GL +H + H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 9e-05
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ S +PF CN CGK F + ++ H+R H+R +
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKS-SGP 43
Score = 35.2 bits (82), Expect = 0.001
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 202 THGAE-PYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
+ E P+ C C K F +R ++ H R+ H K
Sbjct: 6 SGSGERPFKCNECGKGFGRRSHLAGHLRL-HSREKSSGP 43
Score = 28.3 bits (64), Expect = 0.44
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CGK R+S L H+R H+
Sbjct: 14 KCNECGKGFGRRSHLAGHLRL-HS 36
Score = 27.5 bits (62), Expect = 0.89
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
P +C+ CGK R+ L H +HS K
Sbjct: 12 PFKCNECGKGFGRRSHLAGH-LRLHSREKSSGP 43
Score = 24.8 bits (55), Expect = 7.0
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 338 KHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
E+ C CG GF + L H+R H
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 9e-05
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C K F ++ N+ H+R+ H KP
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRI-HTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
+ + KP+ C CGK F K + H R HT
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHT 36
Score = 28.2 bits (64), Expect = 0.50
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
P C CGK ++K LT+H +H+G K
Sbjct: 12 PYRCGECGKAFAQKANLTQH-QRIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.1
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
C CGK ++K+ L H R HT
Sbjct: 14 RCGECGKAFAQKANLTQHQR-IHT 36
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 38.7 bits (91), Expect = 1e-04
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
+ S K C+ CGK+F + +H R H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHM 36
Score = 30.6 bits (70), Expect = 0.056
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G + + C C K F ++ H+R+ H K
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRV-HMGEKCSGP 43
Score = 30.3 bits (69), Expect = 0.078
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 339 HMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
EKSH C CG F + L++H R H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 25.6 bits (57), Expect = 3.5
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 104 AVHSG-KEYPCEQCDRKFTNGYKLKQHMLTHM 134
+ SG K + C++C + F L+ H HM
Sbjct: 5 SSGSGEKSHTCDECGKNFCYISALRIHQRVHM 36
Score = 25.6 bits (57), Expect = 3.7
Identities = 9/24 (37%), Positives = 9/24 (37%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
C CGK S L H R H
Sbjct: 14 TCDECGKNFCYISALRIHQR-VHM 36
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 1e-04
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G + Y C C K F++ +++TH+R+ H KP
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRV-HTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.002
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ K + C++CGK+F ++ H R HT +P
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP-SGP 43
Score = 27.5 bits (62), Expect = 0.97
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C VCGK S+ S L +H R HT
Sbjct: 14 KCDVCGKEFSQSSHLQTHQR-VHT 36
Score = 25.6 bits (57), Expect = 3.6
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
+C CGK S+ L H VH+G K
Sbjct: 12 CYKCDVCGKEFSQSSHLQTH-QRVHTGEKPSGP 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 38.6 bits (91), Expect = 1e-04
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C K F + N+ H+R H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRT-HTGESGPSS 43
Score = 38.2 bits (90), Expect = 1e-04
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + KP+ CN C K F K + +H RTHT
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESG-PSS 43
Score = 28.6 bits (65), Expect = 0.31
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
EC C K + KS L+ H R+ HT
Sbjct: 14 ECNECQKAFNTKSNLMVHQRT-HT 36
Score = 26.7 bits (60), Expect = 1.4
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
P EC+ C K + K L H H+G
Sbjct: 12 PYECNECQKAFNTKSNLMVH-QRTHTGESGPSS 43
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 38.4 bits (90), Expect = 1e-04
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRP 320
P++C CGK F + + +H R+ ++ P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGP 39
Score = 36.5 bits (85), Expect = 5e-04
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 202 THGAE-PYHCKYCDKTFTKRMNVKTHERMKHENHKPY 237
+ G E PY C C K+FT+R ++ H+R P
Sbjct: 5 SSGGETPYLCGQCGKSFTQRGSLAVHQRS-CSQSGPS 40
Score = 29.2 bits (66), Expect = 0.17
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 343 HDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
E +LC CG F L VH R
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 29.2 bits (66), Expect = 0.18
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAG 53
C CGK +++ L H RS + P +G
Sbjct: 13 LCGQCGKSFTQRGSLAVHQRS-CSQSGPSSG 42
Score = 28.0 bits (63), Expect = 0.48
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 106 HSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
G Y C QC + FT L H +
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 1e-04
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C K FT+ ++ H+R+ H KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRI-HTGVKPSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + KP+ CN CGK F ++ H R HT ++P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKP-SGP 43
Score = 26.7 bits (60), Expect = 1.3
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCE 114
P +C+ CGKV ++ L H +H+G K
Sbjct: 12 PYKCNECGKVFTQNSHLANH-QRIHTGVKPSGPS 44
Score = 26.7 bits (60), Expect = 1.8
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CGKV ++ S L +H R HT
Sbjct: 14 KCNECGKVFTQNSHLANHQR-IHT 36
Score = 24.8 bits (55), Expect = 7.9
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 167 GTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQILTHGAEPYHC 210
G+ T E C +CG N L HQ + G +P
Sbjct: 1 GSS-GSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +P+ C+ C K FT+ + +H+R+ H KP
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRV-HTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.001
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
+ S KPF C CGK F ++ H R HT
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHT 36
Score = 27.5 bits (62), Expect = 0.96
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQ 115
P +C CGK ++ +L H VH+G K
Sbjct: 12 PFKCEECGKRFTQNSQLHSH-QRVHTGEKPSGPSS 45
Score = 27.5 bits (62), Expect = 0.96
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CGK ++ S+L SH R HT
Sbjct: 14 KCEECGKRFTQNSQLHSHQR-VHT 36
Score = 25.2 bits (56), Expect = 6.3
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 105 VHSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
SG K + CE+C ++FT +L H H
Sbjct: 6 SGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 24.4 bits (54), Expect = 9.6
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 339 HMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
EK C CG F ++ L H R H
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 24.4 bits (54), Expect = 9.8
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 225 THERMKHENHKPYECYICNKILVSRGRLNEH 255
+ KP++C C K +L+ H
Sbjct: 2 SSGSS-GSGEKPFKCEECGKRFTQNSQLHSH 31
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C K+FT + ++ H++ H +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKC-HTGERHSGP 43
Score = 36.7 bits (86), Expect = 4e-04
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
+ + KP+ C+ CGK F K + +H + HT
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHT 36
Score = 26.0 bits (58), Expect = 2.9
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 225 THERMKHENHKPYECYICNKILVSRGRLNEH 255
+ KPY+C C K + RL H
Sbjct: 2 SSGSS-GTGEKPYKCSDCGKSFTWKSRLRIH 31
Score = 26.0 bits (58), Expect = 3.0
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CGK + KS+L H + HT
Sbjct: 14 KCSDCGKSFTWKSRLRIHQKC-HT 36
Score = 25.6 bits (57), Expect = 3.7
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
P +CS CGK + K +L H H+G +
Sbjct: 12 PYKCSDCGKSFTWKSRLRIH-QKCHTGERHSGP 43
Score = 24.8 bits (55), Expect = 6.8
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 339 HMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
EK + C CG F + L++H + H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C KTF+ + + H+R H KP
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRS-HTGVKPSGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + KP+ C+ C K F LK + +H R+HT ++P
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP-SGP 43
Score = 28.7 bits (65), Expect = 0.30
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
C C K S KS+L+ H RS HT
Sbjct: 14 GCSQCAKTFSLKSQLIVHQRS-HT 36
Score = 27.1 bits (61), Expect = 0.98
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
P CS C K S K +L H H+G K
Sbjct: 12 PYGCSQCAKTFSLKSQLIVH-QRSHTGVKPSGP 43
Score = 26.0 bits (58), Expect = 3.4
Identities = 9/34 (26%), Positives = 11/34 (32%)
Query: 338 KHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
K + C C F + L VH R H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 38.3 bits (90), Expect = 1e-04
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
+ S KP+ CN CGK F K + +H RTH
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHA 36
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C K F + + HER H
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERT-HAGVSGPSS 43
Score = 28.3 bits (64), Expect = 0.46
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGG 54
EC CGK KS L+ H R+ H V+ + G
Sbjct: 14 ECNECGKAFIWKSLLIVHERT-HAGVSGPSSG 44
Score = 25.6 bits (57), Expect = 4.2
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 82 PVECSYCGKVLSRKDKLTRH 101
P EC+ CGK K L H
Sbjct: 12 PYECNECGKAFIWKSLLIVH 31
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G + + C C KTFT+ ++ H+R+ H KP
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRI-HTGEKPSGP 43
Score = 36.7 bits (86), Expect = 4e-04
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
+ + K F CN C K F + +H R HT
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHT 36
Score = 27.1 bits (61), Expect = 1.3
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C C K ++ S L H R HT
Sbjct: 14 KCNECKKTFTQSSSLTVHQR-IHT 36
Score = 26.7 bits (60), Expect = 1.5
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
+C+ C K ++ LT H +H+G K
Sbjct: 12 LFKCNECKKTFTQSSSLTVH-QRIHTGEKPSGP 43
Score = 25.5 bits (57), Expect = 3.7
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 105 VHSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
+G K + C +C + FT L H H
Sbjct: 6 SGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.2 bits (90), Expect = 1e-04
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +P+ CK C K F + +++ +H R+ H KP
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRI-HTGEKPSGP 43
Score = 36.3 bits (85), Expect = 6e-04
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ S KPF C CGK F+ ++ H+R HT +P
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKP-SGP 43
Score = 26.7 bits (60), Expect = 1.4
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CGK + L SH+R HT
Sbjct: 14 KCKECGKAFRQNIHLASHLR-IHT 36
Score = 26.7 bits (60), Expect = 1.6
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCE 114
P +C CGK + L H +H+G K
Sbjct: 12 PFKCKECGKAFRQNIHLASH-LRIHTGEKPSGPS 44
Score = 24.8 bits (55), Expect = 8.5
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 105 VHSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
SG K + C++C + F L H+ H
Sbjct: 6 SGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 1e-04
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C K F R ++ H+ H KP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQAT-HSGEKPSGP 43
Score = 36.7 bits (86), Expect = 4e-04
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + KP+ CN CGK F+ + + +H TH+ +P
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKP-SGP 43
Score = 27.1 bits (61), Expect = 1.1
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
P +C+ CGK + L H A HSG K
Sbjct: 12 PYKCNECGKAFRARSSLAIH-QATHSGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.3
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CGK +S L H + H+
Sbjct: 14 KCNECGKAFRARSSLAIHQAT-HS 36
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 1e-04
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C YC K F + H+R+ H KP
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRI-HTGEKPSGP 43
Score = 36.0 bits (84), Expect = 9e-04
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ S KP+VC+ CGK F L + H R HT +P
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKP-SGP 43
Score = 29.8 bits (68), Expect = 0.12
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQ 115
P C YCGK +L RH +H+G K
Sbjct: 12 PYVCDYCGKAFGLSAELVRH-QRIHTGEKPSGPSS 45
Score = 28.6 bits (65), Expect = 0.37
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
C CGK ++LV H R HT
Sbjct: 14 VCDYCGKAFGLSAELVRHQR-IHT 36
Score = 24.4 bits (54), Expect = 9.3
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 338 KHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
EK ++C CG F A L H R H
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 1e-04
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + + + C+ CGK F K + +H R HT +P
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKP-SGP 43
Score = 37.9 bits (89), Expect = 2e-04
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 197 EHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G Y C C K F ++ + H+R+ H KP
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRI-HTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.19
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
EC CGK +RKS L+ H R HT
Sbjct: 14 ECSECGKAFARKSTLIMHQR-IHT 36
Score = 29.0 bits (66), Expect = 0.27
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
ECS CGK +RK L H +H+G K
Sbjct: 12 HYECSECGKAFARKSTLIMH-QRIHTGEKPSGP 43
Score = 24.4 bits (54), Expect = 10.0
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 338 KHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
E+ + C CG F + L +H R H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 37.9 bits (89), Expect = 1e-04
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY CK C K F++ ++ H+R+ H KP
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRV-HTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + KP+ C CGK F ++ H R HT +P
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKP-SGP 43
Score = 27.9 bits (63), Expect = 0.68
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
P EC CGK S+ L +H VH+G K
Sbjct: 12 PYECKECGKAFSQTTHLIQH-QRVHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.97
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
EC CGK S+ + L+ H R HT
Sbjct: 14 ECKECGKAFSQTTHLIQHQR-VHT 36
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 37.9 bits (89), Expect = 2e-04
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTR 317
+ +D+K + CN CGK F +++ H + HTR
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTR 37
Score = 30.6 bits (70), Expect = 0.070
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 197 EHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
++ Y+C C K FT+ ++ H+++ H
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKI-HTRKSGPSS 43
Score = 29.5 bits (67), Expect = 0.14
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSGKEYPC 113
C+ CGK +R LTRH +H+ K P
Sbjct: 12 SYNCNECGKAFTRIFHLTRH-QKIHTRKSGPS 42
Score = 26.4 bits (59), Expect = 2.2
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGG 54
C CGK +R L H + HT + + G
Sbjct: 14 NCNECGKAFTRIFHLTRHQK-IHTRKSGPSSG 44
Score = 25.6 bits (57), Expect = 3.6
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 105 VHSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
+ K Y C +C + FT + L +H H
Sbjct: 6 SGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + KPF C CGK F + +N+H + HT +P
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKP-SGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +P+ C C K F++R + H ++ H KP
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKL-HTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.85
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
P +C CGK SR+ L H +H+G K
Sbjct: 12 PFKCVECGKGFSRRSALNVH-HKLHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.00
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CGK SR+S L H + HT
Sbjct: 14 KCVECGKGFSRRSALNVHHKL-HT 36
Score = 26.7 bits (60), Expect = 1.6
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 338 KHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
EK C CG GF + L VH + H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 25.2 bits (56), Expect = 5.6
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 225 THERMKHENHKPYECYICNKILVSRGRLNEH 255
+ KP++C C K R LN H
Sbjct: 2 SSGSS-GTGEKPFKCVECGKGFSRRSALNVH 31
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 202 THGAE-PYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
+ E + C+ CD F++ +++ H+ + H KP
Sbjct: 6 SGMGEKTWKCRECDMCFSQASSLRLHQNV-HVGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.002
Identities = 7/34 (20%), Positives = 10/34 (29%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
+ K + C C F + LH H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHV 36
Score = 27.5 bits (62), Expect = 0.85
Identities = 9/35 (25%), Positives = 11/35 (31%), Gaps = 2/35 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQ 115
+C C S+ L H VH G K
Sbjct: 12 TWKCRECDMCFSQASSLRLH-QNVHVGEKPSGPSS 45
Score = 26.7 bits (60), Expect = 1.5
Identities = 7/24 (29%), Positives = 9/24 (37%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C C S+ S L H H
Sbjct: 14 KCRECDMCFSQASSLRLHQNV-HV 36
Score = 26.4 bits (59), Expect = 2.5
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 105 VHSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
G K + C +CD F+ L+ H H
Sbjct: 6 SGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + KP C CGK F K + +H RTH +
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKH-SGP 43
Score = 36.0 bits (84), Expect = 8e-04
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 202 TH-GAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
+ G +P C C K F + + H+R H + K
Sbjct: 6 SGTGEKPCKCTECGKAFCWKSQLIMHQRT-HVDDKHSGP 43
Score = 29.4 bits (67), Expect = 0.19
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CGK KS+L+ H R+ H
Sbjct: 14 KCTECGKAFCWKSQLIMHQRT-HV 36
Score = 27.9 bits (63), Expect = 0.62
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
P +C+ CGK K +L H H K
Sbjct: 12 PCKCTECGKAFCWKSQLIMH-QRTHVDDKHSGP 43
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C K+F ++ H+R+ H KP
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRI-HTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.001
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
+ + KP+ C++C K F+ + +H R HT
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHT 36
Score = 27.1 bits (61), Expect = 1.1
Identities = 10/24 (41%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C VC K S L H R HT
Sbjct: 14 KCDVCHKSFRYGSSLTVHQR-IHT 36
Score = 27.1 bits (61), Expect = 1.3
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
P +C C K LT H +H+G K
Sbjct: 12 PYKCDVCHKSFRYGSSLTVH-QRIHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 4.0
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 105 VHSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
+G K Y C+ C + F G L H H
Sbjct: 6 SGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 24.8 bits (55), Expect = 8.7
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 339 HMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
EK + C VC F + L VH R H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C K F++ + H+R+ H KP
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRV-HTGEKPSGP 43
Score = 36.4 bits (85), Expect = 6e-04
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + KP+ CN CGK F + H R HT +P
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKP-SGP 43
Score = 27.9 bits (63), Expect = 0.60
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCE 114
P +C+ CGK S+ KL RH VH+G K
Sbjct: 12 PYQCNECGKAFSQTSKLARH-QRVHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.2
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CGK S+ SKL H R HT
Sbjct: 14 QCNECGKAFSQTSKLARHQR-VHT 36
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.8 bits (89), Expect = 2e-04
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + KPF C+ C K F K + +H RTHT +P
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKP-SGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +P+ C C K F + N+ H+R H KP
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRT-HTGEKPSGP 43
Score = 27.8 bits (63), Expect = 0.55
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
EC C K + KS L+ H R+ HT
Sbjct: 14 ECSECQKAFNTKSNLIVHQRT-HT 36
Score = 27.8 bits (63), Expect = 0.59
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCE 114
P ECS C K + K L H H+G K
Sbjct: 12 PFECSECQKAFNTKSNLIVH-QRTHTGEKPSGPS 44
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +P+ C C K++ +R+++ H+R+ H KP
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRV-HTGEKPSGP 43
Score = 36.3 bits (85), Expect = 6e-04
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + KPF C CGK + + ++ H R HT +P
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKP-SGP 43
Score = 27.5 bits (62), Expect = 0.94
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
P +C CGK +++ LT+H VH+G K
Sbjct: 12 PFKCGECGKSYNQRVHLTQH-QRVHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.8
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CGK +++ L H R HT
Sbjct: 14 KCGECGKSYNQRVHLTQHQR-VHT 36
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-04
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C K + +R+++ H+R+ H K
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRV-HTGEKLSGP 43
Score = 36.7 bits (86), Expect = 4e-04
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
+ S KP+ C CGK +K + ++ H R HT
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHT 36
Score = 27.9 bits (63), Expect = 0.66
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
P +C CGK R+ L H VH+G K
Sbjct: 12 PYKCVECGKGYKRRLDLDFH-QRVHTGEKLSGP 43
Score = 27.5 bits (62), Expect = 0.76
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CGK R+ L H R HT
Sbjct: 14 KCVECGKGYKRRLDLDFHQRV-HT 36
Score = 26.3 bits (59), Expect = 1.9
Identities = 10/34 (29%), Positives = 12/34 (35%)
Query: 338 KHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
EK + C CG G+ L H R H
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 25.6 bits (57), Expect = 3.7
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 225 THERMKHENHKPYECYICNKILVSRGRLNEH 255
+ KPY+C C K R L+ H
Sbjct: 2 SSGSS-GSGEKPYKCVECGKGYKRRLDLDFH 31
Score = 24.8 bits (55), Expect = 8.6
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 105 VHSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
SG K Y C +C + + L H H
Sbjct: 6 SGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY+C+ C K F ++ H+R+ H KP
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRI-HTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.002
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
+ + KP+ C CGK F + H R HT
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHT 36
Score = 27.9 bits (63), Expect = 0.66
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCE 114
P C CGK +L H +H+G K
Sbjct: 12 PYNCEECGKAFIHDSQLQEH-QRIHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.2
Identities = 10/24 (41%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
C CGK S+L H R HT
Sbjct: 14 NCEECGKAFIHDSQLQEHQR-IHT 36
Score = 25.2 bits (56), Expect = 6.4
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 105 VHSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
+G K Y CE+C + F + +L++H H
Sbjct: 6 SGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 24.8 bits (55), Expect = 6.7
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 338 KHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
EK + C CG F++D+ L+ H R H
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 24.8 bits (55), Expect = 8.2
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 225 THERMKHENHKPYECYICNKILVSRGRLNEH 255
+ KPY C C K + +L EH
Sbjct: 2 SSGSS-GTGEKPYNCEECGKAFIHDSQLQEH 31
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 37.5 bits (87), Expect = 2e-04
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTR 317
+ + PF C+ C + F + Y+ H RTH R
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHAR 37
Score = 32.1 bits (73), Expect = 0.018
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERM 229
G P+ C CD+ FT+R + HER
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERT 34
Score = 28.7 bits (64), Expect = 0.29
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSGKEYP 112
P +CS C +V ++++ L +H H+ K P
Sbjct: 12 PFKCSKCDRVFTQRNYLVQH-ERTHARKSGP 41
Score = 28.3 bits (63), Expect = 0.46
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 104 AVHSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
+ +G + C +CDR FT L QH TH
Sbjct: 5 SSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 25.6 bits (56), Expect = 4.4
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 149 KKFKCDQCDYATKDKYNLGTHIKRRHTKE 177
FKC +CD + L H +R H ++
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQH-ERTHARK 38
Score = 25.2 bits (55), Expect = 5.0
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAG 53
+C C +V ++++ LV H R+ P +G
Sbjct: 14 KCSKCDRVFTQRNYLVQHERTHARKSGPSSG 44
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +P+ C C K+F+ + TH+R+ H KP
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRI-HTGEKPSGP 43
Score = 35.9 bits (84), Expect = 7e-04
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + KPF C CGK F + + H R HT +P
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKP-SGP 43
Score = 28.6 bits (65), Expect = 0.34
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCE 114
P EC+ CGK S +L H +H+G K
Sbjct: 12 PFECAECGKSFSISSQLATH-QRIHTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 0.50
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
EC CGK S S+L +H R HT
Sbjct: 14 ECAECGKSFSISSQLATHQR-IHT 36
Score = 25.5 bits (57), Expect = 4.7
Identities = 10/34 (29%), Positives = 11/34 (32%)
Query: 338 KHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
EK C CG F + L H R H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-04
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + PF+C+ CGK F K + +H + HT RP
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERP-SGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G P+ C C K FT + N+ H+++ H +P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKI-HTGERPSGP 43
Score = 28.2 bits (64), Expect = 0.40
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
C CGKV + K+ L+ H + HT
Sbjct: 14 ICSECGKVFTHKTNLIIHQKI-HT 36
Score = 27.5 bits (62), Expect = 0.98
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
P CS CGKV + K L H +H+G +
Sbjct: 12 PFICSECGKVFTHKTNLIIH-QKIHTGERPSGP 43
Score = 24.8 bits (55), Expect = 8.6
Identities = 6/31 (19%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 225 THERMKHENHKPYECYICNKILVSRGRLNEH 255
+ P+ C C K+ + L H
Sbjct: 2 SSGSS-GTGENPFICSECGKVFTHKTNLIIH 31
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 37.7 bits (88), Expect = 2e-04
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 283 HMALHSDAKPFVCN--ICGKDFKLKYYVNLHMRTHTRIRPTFECD 325
+ + KPF C CG F ++ H R+H+ ++P
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP-SGPS 46
Score = 32.7 bits (75), Expect = 0.011
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 202 TH-GAEPYHCKY--CDKTFTKRMNVKTHERMKHENHKPYEC 239
+ G +P+ C + C F++ + H R H KP
Sbjct: 6 SGTGEKPFACTWPGCGWRFSRSDELSRHRR-SHSGVKPSGP 45
Score = 28.0 bits (63), Expect = 0.50
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 82 PVECSY--CGKVLSRKDKLTRHIAAVHSG-KEYPCE 114
P C++ CG SR D+L+RH HSG K
Sbjct: 12 PFACTWPGCGWRFSRSDELSRHR-RSHSGVKPSGPS 46
Score = 25.0 bits (55), Expect = 8.4
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 25 PVCGKVLSRKSKLVSHMRSFHTSVTP 50
P CG SR +L H RS H+ V P
Sbjct: 18 PGCGWRFSRSDELSRHRRS-HSGVKP 42
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C K FT+ ++ H + H KP
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGI-HTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.005
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + KP+ CN CGK F ++ H HT +P
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKP-SGP 43
Score = 27.5 bits (62), Expect = 0.95
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCE 114
P +C+ CGKV ++ L RH +H+G K
Sbjct: 12 PYKCNECGKVFTQNSHLARH-RGIHTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 3.3
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CGKV ++ S L H HT
Sbjct: 14 KCNECGKVFTQNSHLARHRG-IHT 36
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C K F + H+R+ H KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRI-HTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.001
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
+ + KP+ CN CGK F+ Y++ H R HT
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHT 36
Score = 27.5 bits (62), Expect = 0.83
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCE 114
P +C+ CGKV L+RH +H+G K
Sbjct: 12 PYKCNECGKVFRHNSYLSRH-QRIHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.3
Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CGKV S L H R HT
Sbjct: 14 KCNECGKVFRHNSYLSRHQR-IHT 36
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G PY C C K F+++ + +H+R H KP
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRT-HAGEKPSGP 43
Score = 35.9 bits (84), Expect = 8e-04
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + P+ C+ CGK F KY + H RTH +P
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKP-SGP 43
Score = 29.4 bits (67), Expect = 0.15
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
EC CGK SRK +L+SH R+ H
Sbjct: 14 ECHECGKAFSRKYQLISHQRT-HA 36
Score = 29.0 bits (66), Expect = 0.24
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
P EC CGK SRK +L H H+G K
Sbjct: 12 PYECHECGKAFSRKYQLISH-QRTHAGEKPSGP 43
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 37.5 bits (88), Expect = 2e-04
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + +P+ C CGK FK K + H R+HT +P
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKP-SGP 43
Score = 36.7 bits (86), Expect = 5e-04
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G PY C C K F + ++ H R H KP
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRS-HTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.20
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
EC CGK KS L+ H RS HT
Sbjct: 14 ECIECGKAFKTKSSLICHRRS-HT 36
Score = 27.9 bits (63), Expect = 0.58
Identities = 12/33 (36%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
P EC CGK K L H H+G K
Sbjct: 12 PYECIECGKAFKTKSSLICH-RRSHTGEKPSGP 43
Score = 24.8 bits (55), Expect = 8.5
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 338 KHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
++ + C CG F + L H R H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-04
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C K F + ++ H+ + H KP
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLI-HTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.004
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
+ + KP+ C+ CGK F+ ++ H HT
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHT 36
Score = 27.8 bits (63), Expect = 0.71
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQ 115
P +C CGKV R L RH +H+G K
Sbjct: 12 PYKCHECGKVFRRNSHLARH-QLIHTGEKPSGPSS 45
Score = 27.1 bits (61), Expect = 1.2
Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CGKV R S L H HT
Sbjct: 14 KCHECGKVFRRNSHLARHQL-IHT 36
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-04
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C K FT+ ++ H R+ H KP
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRI-HTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.006
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
+ S KP+ CN CGK F ++ H R HT
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHT 36
Score = 27.1 bits (61), Expect = 1.3
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
P +C+ CGKV ++ LT H +H+G K
Sbjct: 12 PYKCNECGKVFTQNSHLTNH-WRIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 1.7
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CGKV ++ S L +H R HT
Sbjct: 14 KCNECGKVFTQNSHLTNHWR-IHT 36
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-04
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + KP++CN CGK F K ++N H R HT +P
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKP-SGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C K+F ++ ++ H R+ H KP
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRI-HTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.74
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCE 114
P C+ CGK +K L RH +H+G K
Sbjct: 12 PYICNECGKSFIQKSHLNRH-RRIHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.3
Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
C CGK +KS L H R HT
Sbjct: 14 ICNECGKSFIQKSHLNRHRRI-HT 36
Score = 24.8 bits (55), Expect = 8.9
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 225 THERMKHENHKPYECYICNKILVSRGRLNEH 255
+ KPY C C K + + LN H
Sbjct: 2 SSGSS-GTGEKPYICNECGKSFIQKSHLNRH 31
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 37.1 bits (87), Expect = 2e-04
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
KP+ C CG F ++ H+ HT
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHT 35
Score = 35.2 bits (82), Expect = 0.002
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 202 THGAE-PYHCKYCDKTFTKRMNVKTHERMKHENHKPY 237
+ G E PY C+ C F + +++ H + H P
Sbjct: 5 SSGGEKPYKCETCGARFVQVAHLRAHVLI-HTGSGPS 40
Score = 31.0 bits (71), Expect = 0.041
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 339 HMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
EK + C CGA FV A L+ H+ H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 30.6 bits (70), Expect = 0.056
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 105 VHSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
G K Y CE C +F L+ H+L H
Sbjct: 5 SSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 27.9 bits (63), Expect = 0.63
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAG 53
+C CG + + L +H+ HT P +G
Sbjct: 13 KCETCGARFVQVAHLRAHVLI-HTGSGPSSG 42
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-04
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G + + C C K FT++ + H+++ H KP
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKI-HTGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + K F C CGK F K +++H + HT +P
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKP-SGP 43
Score = 30.2 bits (69), Expect = 0.084
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQ 115
EC+ CGK +RK L+ H +H+G K
Sbjct: 12 HFECTECGKAFTRKSTLSMH-QKIHTGEKPSGPSS 45
Score = 27.9 bits (63), Expect = 0.62
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
EC CGK +RKS L H + HT
Sbjct: 14 ECTECGKAFTRKSTLSMHQK-IHT 36
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-04
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C K F N+ TH+ + H KP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVI-HTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.006
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
+ + KP+ CN CGK F+ + H HT
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHT 36
Score = 27.1 bits (61), Expect = 1.0
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCE 114
P +C+ CGK LT H +H+G K
Sbjct: 12 PYKCNECGKAFRAHSNLTTH-QVIHTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 2.9
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CGK S L +H HT
Sbjct: 14 KCNECGKAFRAHSNLTTHQV-IHT 36
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-04
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C K FT+ ++ H + H KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGI-HTGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + KP+ CN CGK F ++ H HT +P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKP-SGP 43
Score = 27.1 bits (61), Expect = 1.2
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCE 114
P +C+ CGKV ++ L RH +H+G K
Sbjct: 12 PYKCNECGKVFTQNSHLARH-RGIHTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 2.8
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CGKV ++ S L H HT
Sbjct: 14 KCNECGKVFTQNSHLARHRG-IHT 36
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C K F++ + H+R+ H KP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRI-HTGEKPSGP 43
Score = 36.0 bits (84), Expect = 8e-04
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + KP+ CN CGK F + H R HT +P
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKP-SGP 43
Score = 27.5 bits (62), Expect = 0.75
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCE 114
P +C+ CGK S+ KL RH +H+G K
Sbjct: 12 PYKCNECGKAFSQTSKLARH-QRIHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.4
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CGK S+ SKL H R HT
Sbjct: 14 KCNECGKAFSQTSKLARHQR-IHT 36
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C+ C K F R ++ TH + H KP
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMV-HTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + KP+ C CGK F + + H HT +P
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKP-SGP 43
Score = 26.3 bits (59), Expect = 2.0
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CGK + L +H HT
Sbjct: 14 KCEECGKGFICRRDLYTHHM-VHT 36
Score = 26.3 bits (59), Expect = 2.0
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCE 114
P +C CGK + L H VH+G K
Sbjct: 12 PYKCEECGKGFICRRDLYTH-HMVHTGEKPSGPS 44
Score = 25.2 bits (56), Expect = 6.2
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 105 VHSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
+G K Y CE+C + F L H + H
Sbjct: 6 SGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
Score = 25.2 bits (56), Expect = 6.2
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 339 HMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
EK + C CG GF+ L H H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 202 TH-GAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
+ G +PY CK C KTF + ++ H+R+ H +
Sbjct: 6 SGSGKKPYECKECRKTFIQIGHLNQHKRV-HTGERSSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ S KP+ C C K F ++N H R HT R
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERS-SGP 43
Score = 29.0 bits (66), Expect = 0.23
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQ 115
P EC C K + L +H VH+G +
Sbjct: 12 PYECKECRKTFIQIGHLNQH-KRVHTGERSSGPSS 45
Score = 27.5 bits (62), Expect = 0.78
Identities = 9/24 (37%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
EC C K + L H R HT
Sbjct: 14 ECKECRKTFIQIGHLNQHKR-VHT 36
Score = 25.2 bits (56), Expect = 6.4
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 231 HENHKPYECYICNKILVSRGRLNEH 255
KPYEC C K + G LN+H
Sbjct: 7 GSGKKPYECKECRKTFIQIGHLNQH 31
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-04
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C K F + ++ H R+ H ++P
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRI-HTGYRPSGP 43
Score = 35.9 bits (84), Expect = 7e-04
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ S KP+ C+ CGK F ++N H R HT RP
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRP-SGP 43
Score = 28.2 bits (64), Expect = 0.39
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQ 115
P +CS CGK R L H +H+G +
Sbjct: 12 PYKCSECGKAFHRHTHLNEH-RRIHTGYRPSGPSS 45
Score = 25.9 bits (58), Expect = 2.7
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CGK R + L H R HT
Sbjct: 14 KCSECGKAFHRHTHLNEHRR-IHT 36
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 37.2 bits (86), Expect = 3e-04
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 287 HSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVC 327
K C ICGK F+ Y++N H +H+ +P +
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKP-YSSGPS 46
Score = 33.8 bits (77), Expect = 0.005
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 207 PYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICN 243
C+ C K F ++ H+ H KPY +
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLS-HSGEKPYSSGPSS 47
Score = 32.2 bits (73), Expect = 0.018
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 107 SGKEYPCEQCDRKFTNGYKLKQHMLTH 133
+ K+ CE C + F + Y L +H L+H
Sbjct: 9 TRKQVACEICGKIFRDVYHLNRHKLSH 35
Score = 29.9 bits (67), Expect = 0.13
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 75 KKPKSRAPVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCEQC 116
++R V C CGK+ L RH HSG K Y
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHK-LSHSGEKPYSSGPS 46
Score = 27.6 bits (61), Expect = 0.86
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 343 HDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
K C +CG F + L H H
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSH 35
Score = 27.6 bits (61), Expect = 0.86
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 149 KKFKCDQCDYATKDKYNLGTHIKRRHTKEYSVLCTQC 185
K+ C+ C +D Y+L H K H+ E
Sbjct: 11 KQVACEICGKIFRDVYHLNRH-KLSHSGEKPYSSGPS 46
Score = 27.6 bits (61), Expect = 0.99
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 264 RFECKLCHKTIVSEKTFKKHMALHSDAKPFVCNIC 298
+ C++C K +H HS KP+
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 197 EHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C+ C K F ++ H + H +P
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSV-HSGERPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + KP+ C +CGK F++ ++ H H+ RP
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERP-SGP 43
Score = 27.1 bits (61), Expect = 1.1
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C VCGK S LV H H+
Sbjct: 14 KCQVCGKAFRVSSHLVQHHSV-HS 36
Score = 26.3 bits (59), Expect = 2.1
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
P +C CGK L +H +VHSG +
Sbjct: 12 PYKCQVCGKAFRVSSHLVQH-HSVHSGERPSGP 43
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 39.5 bits (91), Expect = 3e-04
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHLN 257
+ + + C C F+ +++K H R C +C K S +H+
Sbjct: 65 RLLASKAISQFVCPLCLMPFSSSVSLKQHIR---YTEHTKVCPVCKKEFTSTDSALDHVC 121
Query: 258 QVH 260
+ H
Sbjct: 122 KKH 124
Score = 37.2 bits (85), Expect = 0.002
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 7/119 (5%)
Query: 233 NHKPYECYICNKILVSRGRLNEHLNQVHLAQRFECKLCHKTIVSEKTFKKHMALHSDAKP 292
NHK ++ + L +L + + + + + ++ E ++ +
Sbjct: 16 NHKGIFIHVTLEELKRYHQLTPEQKR-LIRAIVKTLIHNPQLLDESSYLYRLLASKAISQ 74
Query: 293 FVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFPTDFRTKHMLVHDVEKSHLC 351
FVC +C F + H+R T C VC + F T L H +K ++C
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRYTEH---TKVCPVCKKEFT---STDSALDHVCKKHNIC 127
Score = 36.8 bits (84), Expect = 0.003
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 67 QTMLMLDHKKPKSRAPVECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKL 126
++ + K+ + C C S L +HI C C ++FT+
Sbjct: 59 ESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE--HTKVCPVCKKEFTSTDSA 116
Query: 127 KQHM 130
H+
Sbjct: 117 LDHV 120
Score = 32.6 bits (73), Expect = 0.068
Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 14/102 (13%)
Query: 74 HKKPKSRAPVECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTH 133
+K RA V+ L + + A + ++ C C F++ LKQH+
Sbjct: 38 EQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT 97
Query: 134 MQKDTSISIDVISEIKKFKCDQCDYATKDKYNLGTHIKRRHT 175
C C + H+ ++H
Sbjct: 98 E--------------HTKVCPVCKKEFTSTDSALDHVCKKHN 125
Score = 31.1 bits (69), Expect = 0.25
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 174 HTKEYSVLCTQCGFGCYTNRELEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKH 231
+C C ++ L++H T C C K FT + H KH
Sbjct: 69 SKAISQFVCPLCLMPFSSSVSLKQHIRYTE--HTKVCPVCKKEFTSTDSALDHVCKKH 124
Score = 28.0 bits (61), Expect = 2.5
Identities = 14/85 (16%), Positives = 20/85 (23%), Gaps = 35/85 (41%)
Query: 24 CPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHKKPKSRAPV 83
CP+C S L H+R + K
Sbjct: 77 CPLCLMPFSSSVSLKQHIRY------------------------------TEHTK----- 101
Query: 84 ECSYCGKVLSRKDKLTRHIAAVHSG 108
C C K + D H+ H+
Sbjct: 102 VCPVCKKEFTSTDSALDHVCKKHNI 126
Score = 26.4 bits (57), Expect = 9.7
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
CPVC K + + H+ H
Sbjct: 102 VCPVCKKEFTSTDSALDHVCKKHN 125
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECD 325
+ + KPF C+ICGK F + +N H HT +P
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKP-SGPS 44
Score = 36.3 bits (85), Expect = 5e-04
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +P+ C C K+F R + H + H KP
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMV-HTAEKPSGP 43
Score = 28.2 bits (64), Expect = 0.43
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCE 114
P +C CGK + +L RH + VH+ K
Sbjct: 12 PFKCDICGKSFCGRSRLNRH-SMVHTAEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.80
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C +CGK +S+L H HT
Sbjct: 14 KCDICGKSFCGRSRLNRHSM-VHT 36
Score = 26.3 bits (59), Expect = 2.0
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 225 THERMKHENHKPYECYICNKILVSRGRLNEH 255
+ KP++C IC K R RLN H
Sbjct: 2 SSGSS-GTGEKPFKCDICGKSFCGRSRLNRH 31
Score = 24.8 bits (55), Expect = 7.1
Identities = 9/33 (27%), Positives = 11/33 (33%)
Query: 339 HMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
EK C +CG F + L H H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 36.8 bits (86), Expect = 3e-04
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
KP+ C+ CGK F K + +H+R HT
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHT 35
Score = 34.9 bits (81), Expect = 0.002
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPY 237
+ G +PY C C K F+++ ++ H R+ H P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRV-HTGSGPS 40
Score = 29.1 bits (66), Expect = 0.18
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAG 53
C CGK S+K L+ H+R HT P +G
Sbjct: 13 RCDQCGKAFSQKGSLIVHIRV-HTGSGPSSG 42
Score = 26.8 bits (60), Expect = 1.5
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 339 HMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
EK + C CG F L VH+R H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 26.0 bits (58), Expect = 2.4
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 105 VHSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
G K Y C+QC + F+ L H+ H
Sbjct: 5 SSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 26.0 bits (58), Expect = 2.9
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG 108
P C CGK S+K L HI VH+G
Sbjct: 11 PYRCDQCGKAFSQKGSLIVHI-RVHTG 36
Score = 25.2 bits (56), Expect = 5.4
Identities = 9/30 (30%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 226 HERMKHENHKPYECYICNKILVSRGRLNEH 255
KPY C C K +G L H
Sbjct: 2 SSGS-SGGEKPYRCDQCGKAFSQKGSLIVH 30
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 9/35 (25%), Positives = 12/35 (34%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
+ + C+ CGK F H R HT
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHT 36
Score = 35.6 bits (83), Expect = 0.001
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
HG + C C K F + N H R+ H KP
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRI-HTGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.47
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
C CGK + S + H R HT
Sbjct: 14 RCSDCGKFFLQASNFIQHRR-IHT 36
Score = 26.3 bits (59), Expect = 2.1
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 338 KHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
E+ H C CG F+ + H R H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 26.3 bits (59), Expect = 2.4
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
CS CGK + +H +H+G K
Sbjct: 12 GHRCSDCGKFFLQASNFIQH-RRIHTGEKPSGP 43
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G + Y C C K F++ + H+++ H KP
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKI-HTGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + K + CN CGK F ++ H + HT +P
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKP-SGP 43
Score = 27.9 bits (63), Expect = 0.62
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCE 114
+C+ CGKV SR +L++H +H+G K
Sbjct: 12 RYKCNECGKVFSRNSQLSQH-QKIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 0.86
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CGKV SR S+L H + HT
Sbjct: 14 KCNECGKVFSRNSQLSQHQK-IHT 36
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +P+ C+ C K+F+ + H+R+ H P
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRI-HTGENPSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + KP C CGK F + +H R HT P
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENP-SGP 43
Score = 27.9 bits (63), Expect = 0.61
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
EC CGK S S+L+ H R HT
Sbjct: 14 ECRECGKSFSFNSQLIVHQR-IHT 36
Score = 27.1 bits (61), Expect = 1.2
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
P EC CGK S +L H +H+G
Sbjct: 12 PHECRECGKSFSFNSQLIVH-QRIHTGENPSGP 43
Score = 26.3 bits (59), Expect = 2.2
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 338 KHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
EK H C CG F ++ L VH R H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRP 320
+ KP+ C+ CGK F Y + H THTR +P
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKP 40
Score = 35.6 bits (83), Expect = 0.001
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C K+F+ + H H KP
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWIT-HTREKPSGP 43
Score = 29.0 bits (66), Expect = 0.22
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
P +CS CGK S +LT+H H+ K
Sbjct: 12 PYQCSECGKSFSGSYRLTQH-WITHTREKPSGP 43
Score = 28.7 bits (65), Expect = 0.31
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CGK S +L H + HT
Sbjct: 14 QCSECGKSFSGSYRLTQHWIT-HT 36
Score = 27.1 bits (61), Expect = 1.3
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 105 VHSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
G K Y C +C + F+ Y+L QH +TH
Sbjct: 6 SGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 4e-04
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C K FT+ ++ H R+ H KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRV-HTGGKPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + KP+ CN CGK F ++ H R HT +P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKP-SGP 43
Score = 27.1 bits (61), Expect = 1.1
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCE 114
P +C+ CGKV ++ L RH VH+G K
Sbjct: 12 PYKCNECGKVFTQNSHLARH-RRVHTGGKPSGPS 44
Score = 25.9 bits (58), Expect = 2.6
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CGKV ++ S L H R HT
Sbjct: 14 KCNECGKVFTQNSHLARHRR-VHT 36
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 4e-04
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
+ S KP+ C CGK + + +++H R H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHM 36
Score = 36.7 bits (86), Expect = 4e-04
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
+PY C+ C K + +R+N+ H+R+ H K
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRV-HMGEKTSGP 43
Score = 27.8 bits (63), Expect = 0.58
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CGK +R+ L H R H
Sbjct: 14 KCEDCGKGYNRRLNLDMHQR-VHM 36
Score = 27.1 bits (61), Expect = 1.1
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
P +C CGK +R+ L H VH G K
Sbjct: 12 PYKCEDCGKGYNRRLNLDMH-QRVHMGEKTSGP 43
Score = 26.3 bits (59), Expect = 2.5
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 339 HMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
VEK + C CG G+ L +H R H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 25.5 bits (57), Expect = 4.7
Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 105 VHSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
S K Y CE C + + L H H
Sbjct: 6 SGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 25.5 bits (57), Expect = 4.7
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 225 THERMKHENHKPYECYICNKILVSRGRLNEH 255
+ KPY+C C K R L+ H
Sbjct: 2 SSGSS-GSVEKPYKCEDCGKGYNRRLNLDMH 31
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 5e-04
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C K FT+ ++ H + H KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGI-HTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.004
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + KP+ CN CGK F ++ H HT +P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKP-SGP 43
Score = 27.4 bits (62), Expect = 0.98
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCE 114
P +C+ CGKV ++ L RH +H+G K
Sbjct: 12 PYKCNECGKVFTQNSHLVRH-RGIHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.8
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CGKV ++ S LV H HT
Sbjct: 14 KCNECGKVFTQNSHLVRHRG-IHT 36
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 36.3 bits (85), Expect = 5e-04
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 202 TH-GAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G PY C C K F ++ + +H+R H
Sbjct: 4 GSSGENPYECSECGKAFNRKDQLISHQRT-HAGESGPSS 41
Score = 35.6 bits (83), Expect = 0.001
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 287 HSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
S P+ C+ CGK F K + H RTH
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTHAGESG-PSS 41
Score = 30.6 bits (70), Expect = 0.055
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
P ECS CGK +RKD+L H H+G
Sbjct: 10 PYECSECGKAFNRKDQLISH-QRTHAGESGPSS 41
Score = 29.4 bits (67), Expect = 0.16
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
EC CGK +RK +L+SH R+ H
Sbjct: 12 ECSECGKAFNRKDQLISHQRT-HA 34
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 5e-04
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C K F + H+R+ H +P
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRL-HTGQRPSGP 43
Score = 33.3 bits (77), Expect = 0.007
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + KP+ C CGK F H R HT RP
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRP-SGP 43
Score = 27.5 bits (62), Expect = 0.84
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCE 114
P +C CGK T+H +H+G +
Sbjct: 12 PYKCMECGKAFGDNSSCTQH-QRLHTGQRPSGPS 44
Score = 26.8 bits (60), Expect = 1.5
Identities = 9/24 (37%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CGK S H R HT
Sbjct: 14 KCMECGKAFGDNSSCTQHQR-LHT 36
Score = 24.8 bits (55), Expect = 8.0
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 225 THERMKHENHKPYECYICNKILVSRGRLNEH 255
+ KPY+C C K +H
Sbjct: 2 SSGSS-GTGEKPYKCMECGKAFGDNSSCTQH 31
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 5e-04
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C K F+ ++ H+R+ H KP
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRV-HSGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + KP+ C++C K F + H R H+ +P
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKP-SGP 43
Score = 27.9 bits (63), Expect = 0.61
Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCE 114
P EC C K S LT+H VHSG K
Sbjct: 12 PYECDVCRKAFSHHASLTQH-QRVHSGEKPSGPS 44
Score = 27.1 bits (61), Expect = 0.99
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
EC VC K S + L H R H+
Sbjct: 14 ECDVCRKAFSHHASLTQHQR-VHS 36
Score = 24.8 bits (55), Expect = 7.6
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 225 THERMKHENHKPYECYICNKILVSRGRLNEH 255
+ KPYEC +C K L +H
Sbjct: 2 SSGSS-GTGEKPYECDVCRKAFSHHASLTQH 31
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 5e-04
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +P+ C C K F+ + + H R+ H KP
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRI-HTGEKPSGP 43
Score = 36.3 bits (85), Expect = 6e-04
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + KPF C CGK F +N H R HT +P
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP-SGP 43
Score = 27.5 bits (62), Expect = 0.84
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCE 114
P +C CGK S L +H +H+G K
Sbjct: 12 PFDCIDCGKAFSDHIGLNQH-RRIHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.2
Identities = 10/24 (41%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CGK S L H R HT
Sbjct: 14 DCIDCGKAFSDHIGLNQHRR-IHT 36
Score = 24.8 bits (55), Expect = 6.7
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 225 THERMKHENHKPYECYICNKILVSRGRLNEH 255
+ KP++C C K LN+H
Sbjct: 2 SSGSS-GTGEKPFDCIDCGKAFSDHIGLNQH 31
Score = 24.8 bits (55), Expect = 8.5
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 105 VHSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
+G K + C C + F++ L QH H
Sbjct: 6 SGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 24.8 bits (55), Expect = 8.6
Identities = 11/34 (32%), Positives = 12/34 (35%)
Query: 338 KHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
EK C CG F + GL H R H
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 6e-04
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G P+ C C K+F + ++ H+R+ H KP
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRI-HTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + +P CN CGK F ++ H R HT +P
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKP-SGP 43
Score = 26.7 bits (60), Expect = 1.7
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCE 114
P +C+ CGK + L +H +H+G K
Sbjct: 12 PHKCNECGKSFIQSAHLIQH-QRIHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 1.8
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CGK + + L+ H R HT
Sbjct: 14 KCNECGKSFIQSAHLIQHQR-IHT 36
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 36.3 bits (85), Expect = 6e-04
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRP 320
+ + P+ C CGK F K + H +TH+
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSG 40
Score = 33.6 bits (78), Expect = 0.004
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 202 THGAE-PYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
+ E PY C C K F+++ + +H++ H
Sbjct: 6 SGTGENPYECCECGKVFSRKDQLVSHQKT-HSGQSGPSS 43
Score = 30.9 bits (71), Expect = 0.044
Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
EC CGKV SRK +LVSH ++ H+
Sbjct: 14 ECCECGKVFSRKDQLVSHQKT-HS 36
Score = 29.8 bits (68), Expect = 0.11
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 82 PVECSYCGKVLSRKDKLTRH 101
P EC CGKV SRKD+L H
Sbjct: 12 PYECCECGKVFSRKDQLVSH 31
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 6e-04
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G + Y+CK C K+F++ + HER+ H KP
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERL-HSGEKPSGP 43
Score = 36.0 bits (84), Expect = 8e-04
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFEC 324
+ + K + C CGK F + H R H+ +P
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKP-SGP 43
Score = 28.6 bits (65), Expect = 0.28
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPC 113
C CGK SR L +H +HSG K
Sbjct: 12 LYNCKECGKSFSRAPCLLKH-ERLHSGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.28
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
C CGK SR L+ H R H+
Sbjct: 14 NCKECGKSFSRAPCLLKHER-LHS 36
Score = 24.8 bits (55), Expect = 8.0
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 105 VHSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
+G K Y C++C + F+ L +H H
Sbjct: 6 SGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 7e-04
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C K F+ ++ TH+ + H KP
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVI-HTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.003
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 282 KHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
+ + KP++CN CGK F + + H HT
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHT 36
Score = 27.9 bits (63), Expect = 0.53
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCE 114
P C+ CGK S LT H +H+G K
Sbjct: 12 PYMCNECGKAFSVYSSLTTH-QVIHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 1.2
Identities = 10/24 (41%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
C CGK S S L +H HT
Sbjct: 14 MCNECGKAFSVYSSLTTHQV-IHT 36
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 36.6 bits (84), Expect = 0.001
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTHMQKDTS 139
+CS CG + R+ L+R K CE+C + L + K TS
Sbjct: 18 SQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
Score = 36.6 bits (84), Expect = 0.001
Identities = 12/62 (19%), Positives = 16/62 (25%), Gaps = 8/62 (12%)
Query: 194 ELEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLN 253
+ Q + G C C F +R K C C K LN
Sbjct: 5 SSGKRQKIHLGDRSQKCSKCGIIFIRRST--------LSRRKTPMCEKCRKDSCQEAALN 56
Query: 254 EH 255
+
Sbjct: 57 KD 58
Score = 32.7 bits (74), Expect = 0.021
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 9/70 (12%)
Query: 248 SRGRLNEHLNQVHLAQR-FECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKY 306
S G + ++HL R +C C + T + K +C C KD +
Sbjct: 2 SSGSSGKR-QKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEA 53
Query: 307 YVNLHMRTHT 316
+N +
Sbjct: 54 ALNKDEGNES 63
Score = 31.9 bits (72), Expect = 0.042
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 8/72 (11%)
Query: 222 NVKTHERMKHENHKPYECYICNKILVSRGRLNEHLNQVHLAQRFECKLCHKTIVSEKTFK 281
+ +++ H + +C C I + R L+ + C+ C K E
Sbjct: 5 SSGKRQKI-HLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALN 56
Query: 282 KHMALHSDAKPF 293
K S K
Sbjct: 57 KDEGNESGKKTS 68
Score = 29.6 bits (66), Expect = 0.28
Identities = 14/96 (14%), Positives = 22/96 (22%), Gaps = 35/96 (36%)
Query: 276 SEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCHQIFPTDF 335
S + K +H + C+ CG F T +R
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFI-------RRSTLSR------------------ 36
Query: 336 RTKHMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
K+ +C C +A L
Sbjct: 37 ----------RKTPMCEKCRKDSCQEAALNKDEGNE 62
Score = 28.5 bits (63), Expect = 0.67
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 8/67 (11%)
Query: 171 KRRHTKEYSVLCTQCGFGCYTNRELEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMK 230
++ H + S C++CG L + C+ C K + + E
Sbjct: 10 QKIHLGDRSQKCSKCGIIFIRRSTLSRRK-------TPMCEKCRKDSCQEAALNKDEGN- 61
Query: 231 HENHKPY 237
K
Sbjct: 62 ESGKKTS 68
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 35.6 bits (83), Expect = 0.001
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 198 HQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +P+ C+ C K F +H+R H KP
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRS-HSGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
+ S KPF C CGK F H R+H+
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHS 36
Score = 28.3 bits (64), Expect = 0.40
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHT 46
+C CGK S+ SH RS H+
Sbjct: 14 KCEECGKGFYTNSQCYSHQRS-HS 36
Score = 27.5 bits (62), Expect = 0.73
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG-KEYPCE 114
P +C CGK + H HSG K
Sbjct: 12 PFKCEECGKGFYTNSQCYSH-QRSHSGEKPSGPS 44
Score = 25.2 bits (56), Expect = 5.3
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 339 HMLVHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
EK C CG GF ++ H R H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 25.2 bits (56), Expect = 6.2
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 105 VHSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
SG K + CE+C + F + H +H
Sbjct: 6 SGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 24.8 bits (55), Expect = 8.6
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 167 GTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQILTHGAEPYHC 210
G+ + E C +CG G YTN + HQ G +P
Sbjct: 1 GSS-GSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 0.001
Identities = 59/465 (12%), Positives = 124/465 (26%), Gaps = 203/465 (43%)
Query: 30 VLS----RKSKLVSHMRSFHTSV------------TPEAGGDNNDTSGHMSQIQTMLMLD 73
LS LV F S T D+ T+
Sbjct: 10 TLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTT------------- 56
Query: 74 HKKPKSRAPVECSYCGKVLSRKDKLTRHIAA-VHSGKEYPCEQCDRK----FTNGYKLKQ 128
P E GK L ++++ V K +Q F N Y L+
Sbjct: 57 --------PAE--LVGKFLG-------YVSSLVEPSKVGQFDQVLNLCLTEFENCY-LEG 98
Query: 129 ---HMLT-HMQKDTSISIDVISEIKKFKCDQCDY-----ATKDKYN------LGTHIKRR 173
H L + ++ ++ E+ K Y K ++ L +
Sbjct: 99 NDIHALAAKLLQENDTTLVKTKEL--IKN----YITARIMAKRPFDKKSNSALFRAVGEG 152
Query: 174 HTKEYSVLCTQCGFG-------CYTNRELEE----------------HQILTHGAEPYHC 210
+ + ++ FG + EL + + L+
Sbjct: 153 NAQLVAI------FGGQGNTDDYF--EELRDLYQTYHVLVGDLIKFSAETLSELIR--TT 202
Query: 211 KYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHLNQVHLAQRFECKLC 270
+K FT+ +N+ E +++ ++ P + Y+ + I +S + + Q L
Sbjct: 203 LDAEKVFTQGLNI--LEWLENPSNTPDKDYLLS-IPIS-------CPLIGVIQ-----LA 247
Query: 271 HKTIVSEKT------FKKHM----------------ALHSDAKPFVCNICGKDFKLKYYV 308
H + ++ + ++ A + F ++ K + +++
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV-RKAITVLFFI 306
Query: 309 NLHMRTHTRIRPTFECDVCHQIFP-TDFRTK--------------HML-VHDVEKSHL-- 350
+ C++ +P T ML + ++ + +
Sbjct: 307 GVR---------------CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD 351
Query: 351 ------------------------CFVCGAGFVND-AGLKVHMRK 370
V +G GL + +RK
Sbjct: 352 YVNKTNSHLPAGKQVEISLVNGAKNLVV-SGPPQSLYGLNLTLRK 395
Score = 31.2 bits (70), Expect = 0.62
Identities = 18/140 (12%), Positives = 33/140 (23%), Gaps = 63/140 (45%)
Query: 2 VVISLSDTEAIEPKPSKYIKVECPVCG------------------------KVLSRKSKL 37
V ISL + + V G ++ + KL
Sbjct: 366 VEISLVNG------AKNLV-----VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 38 VSHMR----S--FHTSVTPEAGGDNNDTSGHMSQIQTMLMLDHK------KPKS-RAPVE 84
R + FH+ + ++ D K + PV
Sbjct: 415 KFSNRFLPVASPFHSH--------------LLVPASDLINKDLVKNNVSFNAKDIQIPVY 460
Query: 85 CSYCGKVL-SRKDKLTRHIA 103
++ G L ++ I
Sbjct: 461 DTFDGSDLRVLSGSISERIV 480
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 36.7 bits (84), Expect = 0.002
Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 8/88 (9%)
Query: 96 DKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSISIDVISEIKKFKCDQ 155
+ Y C+ C + + H+ S +V+ + C +
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHV-------DSEHPNVVLN-SSYVCVE 55
Query: 156 CDYATKDKYNLGTHIKRRHTKEYSVLCT 183
C++ TK L H + H E + T
Sbjct: 56 CNFLTKRYDALSEHNLKYHPGEENFKLT 83
Score = 32.1 bits (72), Expect = 0.063
Identities = 17/69 (24%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Query: 195 LEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHK---PYECYICNKILVSRGR 251
+Q Y CKYC H +H N Y C CN +
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDA 65
Query: 252 LNEHLNQVH 260
L+EH + H
Sbjct: 66 LSEHNLKYH 74
Score = 29.7 bits (66), Expect = 0.42
Identities = 11/91 (12%), Positives = 21/91 (23%), Gaps = 25/91 (27%)
Query: 149 KKFKCDQCDYATKDKYNLGTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQILTHGAEPY 208
++C C + T D H+ H Y
Sbjct: 17 GGYECKYCTFQTPDLNMFTFHVDSEHPN-------------------------VVLNSSY 51
Query: 209 HCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
C C+ + + H H + ++
Sbjct: 52 VCVECNFLTKRYDALSEHNLKYHPGEENFKL 82
Score = 28.2 bits (62), Expect = 1.6
Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 5/86 (5%)
Query: 221 MNVKTHERMKHENHKPYECYICNKILVSRGRLNEHLNQVHLAQR----FECKLCHKTIVS 276
+ H + + YEC C H++ H + C C+
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR 62
Query: 277 EKTFKKHMA-LHSDAKPFVCNICGKD 301
+H H + F + ++
Sbjct: 63 YDALSEHNLKYHPGEENFKLTMVKRN 88
Score = 26.3 bits (57), Expect = 7.3
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 4/76 (5%)
Query: 255 HLNQVHLAQRFECKLCHKTIVSEKTFKKHMAL-HSDAK---PFVCNICGKDFKLKYYVNL 310
+ + +ECK C F H+ H + +VC C K ++
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSE 68
Query: 311 HMRTHTRIRPTFECDV 326
H + F+ +
Sbjct: 69 HNLKYHPGEENFKLTM 84
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 34.6 bits (80), Expect = 0.002
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 283 HMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRI 318
+ KPF C C + F ++ LH + H +
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37
Score = 30.0 bits (68), Expect = 0.098
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 106 HSG-KEYPCEQCDRKFTNGYKLKQHMLTHM 134
+G K + C CDR F+ L H HM
Sbjct: 6 STGIKPFQCPDCDRSFSRSDHLALHRKRHM 35
Score = 28.5 bits (64), Expect = 0.29
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 311 HMRTHTRIRPTFECDVCHQIFP-TDFRTKHMLVH 343
R T I+P F+C C + F +D H H
Sbjct: 2 STRGSTGIKP-FQCPDCDRSFSRSDHLALHRKRH 34
Score = 25.0 bits (55), Expect = 4.9
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 82 PVECSYCGKVLSRKDKLTRHI 102
P +C C + SR D L H
Sbjct: 11 PFQCPDCDRSFSRSDHLALHR 31
Score = 25.0 bits (55), Expect = 6.0
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 23 ECPVCGKVLSRKSKLVSHMR 42
+CP C + SR L H +
Sbjct: 13 QCPDCDRSFSRSDHLALHRK 32
Score = 24.6 bits (54), Expect = 8.2
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 204 GAEPYHCKYCDKTFTKRMNVKTHER 228
G +P+ C CD++F++ ++ H +
Sbjct: 8 GIKPFQCPDCDRSFSRSDHLALHRK 32
>3ov0_A Cytochrome C family protein; multiheme cytochrome C, electron
transfer, Fe reduction, GEO sulfurreducens; HET: HEM;
3.20A {Geobacter sulfurreducens}
Length = 318
Score = 38.5 bits (87), Expect = 0.002
Identities = 41/293 (13%), Positives = 75/293 (25%), Gaps = 23/293 (7%)
Query: 73 DHKKPKSRAPVECSYCGKVLSRKDKLTRHIAAV----------HSGKEYPCEQCDRKFTN 122
H + C C L K R+ H+G + D +
Sbjct: 19 SHDIHLKKYNNNCRICHIALFDLRKPKRYTMLDMEKGKSCGACHTGMKAFSVADDSQCVR 78
Query: 123 GYKLKQHMLTHMQKDTSISIDVISEIKKFKCDQCDYATKDKYNLGTHIKRRHTKEYSVLC 182
+ + + K ++ +C ++ G E C
Sbjct: 79 CHSGSARPVAYRMKGAGEAVFSHEVHVPMLEGKCRTCHSNREITGGRNVTMAQMEKGKSC 138
Query: 183 TQCGFGCYTNRELEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYIC 242
C N ++ G K V + Y+C C
Sbjct: 139 GAC-----HNDKMAFTVAGNCGKCHKGMTPPKTVNFKMKGVADAAFSHEFHLGMYKCNEC 193
Query: 243 NKILVSRGRLNEHLNQVHLAQRFECKLCHKTIVSEKTFKKHMALHSDAKPFVCNICGKDF 302
+ L + + + + C CH + + H KP
Sbjct: 194 HTKLFAYKAGAKRFTMADMDKGKSCGACHNGKDAFSSASDCGKCHPGLKPAKLTYKTSVG 253
Query: 303 KLKYYVNLHMRTHTRIRPTFECDVCHQ-IFPTDFRTKHMLVHDVEKSHLCFVC 354
+ + ++H+ F+C CH +F + + D+EK C VC
Sbjct: 254 EAYFDHDIHLS-------MFKCADCHTKVFKYRKGSAPATMADMEKGKSCGVC 299
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 34.1 bits (79), Expect = 0.003
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 204 GAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPY 237
G Y C+ C K+F ++ ++ HER+ H P
Sbjct: 7 GQRVYECQECGKSFRQKGSLTLHERI-HTGSGPS 39
Score = 33.7 bits (78), Expect = 0.005
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 287 HSDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
S + + C CGK F+ K + LH R HT
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIHT 34
Score = 28.3 bits (64), Expect = 0.44
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 82 PVECSYCGKVLSRKDKLTRH 101
EC CGK +K LT H
Sbjct: 10 VYECQECGKSFRQKGSLTLH 29
Score = 27.9 bits (63), Expect = 0.54
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAG 53
EC CGK +K L H R HT P +G
Sbjct: 12 ECQECGKSFRQKGSLTLHER-IHTGSGPSSG 41
Score = 24.8 bits (55), Expect = 6.3
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 235 KPYECYICNKILVSRGRLNEH 255
+ YEC C K +G L H
Sbjct: 9 RVYECQECGKSFRQKGSLTLH 29
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 34.7 bits (80), Expect = 0.004
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 74 HKKPKSRAPVECSY--CGKVLSRKDKLTRHIAAVHSG-KEYPC--EQCDRKFTNGYKLKQ 128
CS+ CGK + L H H+G K + C + C+R+F +L +
Sbjct: 9 QIDSSRIRSHICSHPGCGKTYFKSSHLKAHTR-THTGEKPFSCSWKGCERRFARSDELSR 67
Query: 129 HMLTH 133
H TH
Sbjct: 68 HRRTH 72
Score = 34.3 bits (79), Expect = 0.006
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 281 KKHMALHSDAKPFVCNI--CGKDFKLKYYVNLHMRTHTRIRPTFECDV--CHQIFP-TDF 335
S + +C+ CGK + ++ H RTHT +P F C C + F +D
Sbjct: 6 SGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKP-FSCSWKGCERRFARSDE 64
Query: 336 RTKHMLVH 343
++H H
Sbjct: 65 LSRHRRTH 72
Score = 33.1 bits (76), Expect = 0.017
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 193 RELEEHQILTHGAEPYHCKY--CDKTFTKRMNVKTHERMKHENHKPYEC 239
QI + + C + C KT+ K ++K H R H KP+ C
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTR-THTGEKPFSC 50
Score = 26.6 bits (59), Expect = 3.4
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 336 RTKHMLVHDVEKSHLCFV--CGAGFVNDAGLKVHMRKH 371
+ + +SH+C CG + + LK H R H
Sbjct: 5 SSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTH 42
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 37.9 bits (87), Expect = 0.005
Identities = 14/102 (13%), Positives = 33/102 (32%), Gaps = 5/102 (4%)
Query: 59 TSGHMSQIQTMLMLDHKKPKSRAPVE---CSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQ 115
+ +++ +D++ ++ P+ ++S+ SG Y C
Sbjct: 126 GINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHV 185
Query: 116 CDRKFTNGYKLKQHMLTHMQKDTS--ISIDVISEIKKFKCDQ 155
C + L H+ +H S ++ I +F
Sbjct: 186 CSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRHITEFISSW 227
Score = 35.2 bits (80), Expect = 0.041
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 287 HSDAKPFVCNICGKDFKLKYYVNLHMRTH 315
S + C++C ++ H+ +H
Sbjct: 175 ASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 32.9 bits (74), Expect = 0.20
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 342 VHDVEKSHLCFVCGAGFVNDAGLKVHMRKH 371
+ C VC A + L H+ H
Sbjct: 174 TASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 31.7 bits (71), Expect = 0.46
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 14 PKPSKYIKVECPVCGKVLSRKSKLVSHMRSFHT 46
P S +C VC VL L +H+ S
Sbjct: 173 PTASSGHGYQCHVCSAVLFSPLDLDAHVASHGL 205
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 33.3 bits (75), Expect = 0.006
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 149 KKFKCDQCDYATKDKYNLGTHIKRRHTKE 177
K +KC QC YA+ K NL H+ R+HT E
Sbjct: 8 KPYKCPQCSYASAIKANLNVHL-RKHTGE 35
Score = 25.6 bits (55), Expect = 3.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 288 SDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
S KP+ C C +K +N+H+R HT
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHT 33
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 33.1 bits (76), Expect = 0.009
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 287 HSDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
S KP+ C C + F + H + HT
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 29.6 bits (67), Expect = 0.12
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGG 54
C C + S ++LV H + HT + + G
Sbjct: 12 SCAECKETFSDNNRLVQHQK-MHTVKSGPSSG 42
Score = 28.4 bits (64), Expect = 0.39
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 202 TH-GAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYEC 239
G +PY C C +TF+ + H++M H
Sbjct: 4 GSSGEKPYSCAECKETFSDNNRLVQHQKM-HTVKSGPSS 41
Score = 27.3 bits (61), Expect = 0.99
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 103 AAVHSG-KEYPCEQCDRKFTNGYKLKQHMLTH 133
++ SG K Y C +C F++ +L QH H
Sbjct: 2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 26.1 bits (58), Expect = 2.7
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSGKEYP 112
P C+ C + S ++L +H +H+ K P
Sbjct: 10 PYSCAECKETFSDNNRLVQH-QKMHTVKSGP 39
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 32.6 bits (73), Expect = 0.012
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 149 KKFKCDQCDYATKDKYNLGTHIKRRHTKE 177
K FKC C+YAT+ K NL H+ R T++
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 32.6 bits (73), Expect = 0.014
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 287 HSDAKPFVCNICGKDFKLKYYVNLHMRTHTR 317
S KP+ C +CG FK K ++ H+R+H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 26.4 bits (57), Expect = 2.4
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG 108
P C CG RKD+++ H+ +
Sbjct: 10 PYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 26.0 bits (56), Expect = 2.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVT 49
CPVCG RK ++ H+RS SV
Sbjct: 12 SCPVCGLRFKRKDRMSYHVRSHDGSVG 38
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 35.0 bits (80), Expect = 0.021
Identities = 26/122 (21%), Positives = 34/122 (27%), Gaps = 54/122 (44%)
Query: 1 MVVISLSDTEAIEPKPSKYIKVECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGGDNNDTS 60
M+ D A P+ I + CP C K+V
Sbjct: 1 MMTRESIDKRAGRRGPNLNIVLTCPECK---VYPPKIV---------------------- 35
Query: 61 GHMSQIQTMLMLDHKKPKSRAPVECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKF 120
S V C+ CG VLS DKL V + E+ R F
Sbjct: 36 -----------ERF----SEGDVVCALCGLVLS--DKL------VDTRSEW------RTF 66
Query: 121 TN 122
+N
Sbjct: 67 SN 68
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 31.7 bits (71), Expect = 0.033
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 285 ALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTR 317
+ K F CN C K F Y+ H R HTR
Sbjct: 5 SSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTR 37
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 32.6 bits (73), Expect = 0.045
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 257 NQVHLAQRFECKLCHKTIVSEKT---FKKHMAL-HSDAKPFVCNICGKDFKLKYYVNLHM 312
+H C C +V+ KT KKHM + C C K FK K +N H
Sbjct: 17 RAIHERGEAVCPTC--NVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHT 74
Query: 313 RTHTRIRPT 321
+P+
Sbjct: 75 MAEHSAKPS 83
Score = 29.1 bits (64), Expect = 0.67
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 208 YHCKYCDKTFTKRM-NVKTHERMKHENHKPYECYICNKILVSRGRLNEHLNQVHLAQ 263
C C+ K + +K H + + +C C K S+ LN H H A+
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
Score = 29.1 bits (64), Expect = 0.79
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 3/73 (4%)
Query: 78 KSRAPVECSYCGKVLSRK-DKLTRHIAAVHSGKE-YPCEQCDRKFTNGYKLKQH-MLTHM 134
R C C V + L +H+ ++ C+ C ++F + L H M H
Sbjct: 20 HERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
Query: 135 QKDTSISIDVISE 147
K + E
Sbjct: 80 AKPSDAEASEGGE 92
Score = 28.4 bits (62), Expect = 1.3
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 171 KRRHTKEYSVLCTQCG-FGCYTNRELEEHQILTH-GAEPYHCKYCDKTFTKRMNVKTHER 228
+R + +C C T L++H + + C++C K F + + H
Sbjct: 16 QRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM 75
Query: 229 MKHENHKP 236
+H
Sbjct: 76 AEHSAKPS 83
Score = 26.4 bits (57), Expect = 6.0
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 145 ISEIKKFKCDQCDYAT-KDKYNLGTHIKRRHTKEYSVLCTQCGFGCYTNRELEEHQILTH 203
I E + C C+ T K L H++ + ++ C C + L H + H
Sbjct: 19 IHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEH 78
Query: 204 GAEP 207
A+P
Sbjct: 79 SAKP 82
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 30.5 bits (68), Expect = 0.046
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHT 316
+P+ C++CGK F LK+ + H R HT
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHT 27
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 30.4 bits (69), Expect = 0.061
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHTR 317
+ FVC +C + F + ++ H R+HT
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTN 27
Score = 26.1 bits (58), Expect = 2.1
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 207 PYHCKYCDKTFTKRMNVKTHER 228
+ C+ C + F ++ ++K H R
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYR 23
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 30.2 bits (68), Expect = 0.069
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSG 108
C C + +R+D L RH +HSG
Sbjct: 2 AYACGLCNRAFTRRDLLIRHAQKIHSG 28
Score = 25.6 bits (56), Expect = 2.7
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 235 KPYECYICNKILVSRGRLNEHLNQVH 260
K Y C +CN+ R L H ++H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIH 26
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA
binding motif, transcriptional regulator, bacter
antitoxin, Zn binding protein, transcription
regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB:
3gn5_A* 3gn5_B* 2kz8_A
Length = 133
Score = 32.4 bits (73), Expect = 0.092
Identities = 11/107 (10%), Positives = 26/107 (24%), Gaps = 14/107 (13%)
Query: 182 CTQCGFGCYTNRELEEH------QILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHK 235
C C G + + + + G +C +C+++ +
Sbjct: 5 CPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMNKEESDAFMAQVKAFRA 64
Query: 236 PYECYICNKILVSRGRLNEHLNQVHLAQRFECKLCHKTIVSEKTFKK 282
+ + R L Q ++ F F +
Sbjct: 65 SVNAETVAPEFIVKVRKKLSLTQKEASEIFG--------GGVNAFSR 103
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.4 bits (65), Expect = 0.14
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 288 SDAKPFVCNICGKDFKLKYYVNLHMRTHTR 317
S K F C C K FK K+ + H+R HT
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTN 34
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 29.4 bits (66), Expect = 0.15
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 291 KPFVCNI--CGKDFKLKYYVNLHMRTHTRIR 319
K F C C K FK +Y + H++TH R
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 27.5 bits (61), Expect = 0.85
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 109 KEYPC--EQCDRKFTNGYKLKQHMLTHMQ 135
K + C C + F Y ++ H+ TH++
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLE 45
Score = 26.7 bits (59), Expect = 1.7
Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 207 PYHCKY--CDKTFTKRMNVKTHER 228
+ C + C KTF +R N+++H +
Sbjct: 18 TFECLFPGCTKTFKRRYNIRSHIQ 41
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 29.0 bits (64), Expect = 0.18
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 149 KKFKCDQCDYATKDKYNLGTHIKRRHTKE 177
K ++C C++ + D NL THIK +H+KE
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKE 29
Score = 26.7 bits (58), Expect = 1.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 206 EPYHCKYCDKTFTKRMNVKTHERMKHENHK 235
+ Y C+YC+ N+KTH + KH K
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 28.2 bits (62), Expect = 0.44
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 111 YPCEQCDRKFTNGYKLKQHMLTHMQK 136
Y C C+RKF N +HML H K
Sbjct: 10 YDCHICERKFKNELDRDRHMLVHGDK 35
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 31.7 bits (71), Expect = 0.46
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 14 PKPSKYIKVECPVCGKVLSRKSKLVSHMRSFH 45
PS Y+ C VC S S L H+RS H
Sbjct: 112 VNPSSYV---CNVCNARFSTMSALSEHLRSDH 140
Score = 31.3 bits (70), Expect = 0.54
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 347 KSHLCFVCGAGFVNDAGLKVHMR 369
S++C VC A F + L H+R
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLR 137
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 27.6 bits (62), Expect = 0.49
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 291 KPFVCNI--CGKDFKLKYYVNLHMRTHTRIR 319
+PF+C CGK F + H RTHT +
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 26.4 bits (59), Expect = 1.4
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 82 PVECSY--CGKVLSRKDKLTRHIAAVHSG 108
P C++ CGK +R D+L RH H+G
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHK-RTHTG 29
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 27.8 bits (61), Expect = 0.53
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 287 HSDAKPFVCNICGKDFKLKYYVNLHMRTHT 316
S +PFVC IC F K H++ HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 24.7 bits (53), Expect = 6.2
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 204 GAEPYHCKYCDKTFTKRMNVKTHERM 229
G P+ C+ C FT + N H ++
Sbjct: 4 GKRPFVCRICLSAFTTKANCARHLKV 29
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 66
Score = 28.7 bits (63), Expect = 0.54
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 111 YPCEQCDRKFTNGYKLKQHMLTH 133
PC C + FT+ +L+QH H
Sbjct: 14 LPCGLCGKVFTDANRLRQHEAQH 36
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 28.5 bits (63), Expect = 0.56
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 114 EQCDRKFTNGYKLKQHMLTHMQKDTSISIDVISEIKKFKC--DQCDYATKDKYNLGTHIK 171
++C ++ + L++H+L +S D ++ C + CD+ D ++ HI
Sbjct: 7 KECPESASSLFDLQRHLL-----KDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHIN 61
Query: 172 RRH 174
+H
Sbjct: 62 AQH 64
>2yww_A Aspartate carbamoyltransferase regulatory chain; ATP complex,
structural genomics, NPPSFA; HET: ATP; 2.00A
{Methanocaldococcus jannaschii}
Length = 149
Score = 30.0 bits (68), Expect = 0.60
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 189 CYTNRELEEHQILTHGAEP--YHCKYCDKTFTKRM 221
C TN+E + P C YC+K + +
Sbjct: 113 CITNKEKVRGKFKIESKNPLKIRCYYCEKFLNEVI 147
>3oue_A Cytochrome C family protein; multiheme cytochrome-C, electron
transfer, Fe reduction, GEO sulfurreducens, cytochrome
C7 (C3) fold; HET: HEM; 2.15A {Geobacter sulfurreducens}
Length = 158
Score = 29.9 bits (66), Expect = 0.79
Identities = 25/126 (19%), Positives = 41/126 (32%), Gaps = 9/126 (7%)
Query: 231 HENH-KPYECYICNKILVSRGRLNEHLNQVHLAQRFECKLCHKTIVSEKTFKKHMALHSD 289
HE H Y+C C+ L + + + + C CH + + H
Sbjct: 21 HEFHLGMYKCNECHTKLFAYKAGAKRFTMADMDKGKSCGACHNGKDAFSSASDCGKCHPG 80
Query: 290 AKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCH-QIFPTDFRTKHMLVHDVEKS 348
KP + + H F+C CH ++F + + D+EK
Sbjct: 81 LKPAKLTYKTSVGEAYF-------DHDIHLSMFKCADCHTKVFKYRKGSAPATMADMEKG 133
Query: 349 HLCFVC 354
C VC
Sbjct: 134 KSCGVC 139
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 27.4 bits (61), Expect = 0.90
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 109 KEYPCEQCDRKFTNGYKLKQHMLTH 133
+ Y C C R+F + L HM H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 27.6 bits (60), Expect = 0.96
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 79 SRAPVECSYCGKVLSRKDKLTRHIAAVHSGKEYP 112
++ EC CGK+ L H A+H+G+ P
Sbjct: 9 AKTTSECQECGKIFRHSSLLIEH-QALHAGESGP 41
Score = 25.2 bits (54), Expect = 5.4
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 23 ECPVCGKVLSRKSKLVSHMRSFHTSVTPEAGG 54
EC CGK+ S L+ H ++ H + + G
Sbjct: 14 ECQECGKIFRHSSLLIEH-QALHAGESGPSSG 44
>1rwj_A Cytochrome C family protein; multiheme cytochrome C, geobacter
metallireducens, heme coordination in C-type
cytochromes; HET: HEM; 1.70A {Geobacter sulfurreducens}
SCOP: a.138.1.1
Length = 82
Score = 28.4 bits (63), Expect = 0.97
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 315 HTRIRPTFECDVCH-QIFPTDFRTKHMLVHDVEKSHLCFVC 354
H ++C+ CH ++F K + D++K C C
Sbjct: 23 HEFHLGMYKCNECHTKLFAYKAGAKRFTMADMDKGKSCGAC 63
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin
remodeling, DNA binding protein/DNA complex; HET: DNA;
NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB:
1yuj_A*
Length = 54
Score = 27.2 bits (59), Expect = 1.4
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 76 KPKSRAPVECSYCGKVLSRKDKLTRHIAAVHSGK 109
+ +S P C C V+ + L RH+ H K
Sbjct: 18 RSQSEQPATCPICYAVIRQSRNLRRHLELRHFAK 51
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 27.5 bits (60), Expect = 2.4
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Query: 257 NQVHLAQRFECKLCHKTIVSEKT---FKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMR 313
++ C C V KT KKHM + F C+ CGK + + H+
Sbjct: 27 LEIVDKGSVSCPTC--QAVGRKTIEGLKKHMENCK-QEMFTCHHCGKQLRSLAGMKYHVM 83
Query: 314 THTRIRPTF 322
+ P+
Sbjct: 84 ANHNSLPSG 92
Score = 27.5 bits (60), Expect = 2.6
Identities = 12/66 (18%), Positives = 19/66 (28%)
Query: 171 KRRHTKEYSVLCTQCGFGCYTNRELEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMK 230
+ SV C C E + + E + C +C K +K H
Sbjct: 26 YLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMAN 85
Query: 231 HENHKP 236
H +
Sbjct: 86 HNSLPS 91
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA
degradation, allosteric REGU; HET: ADP 1PE; 2.40A
{Saccharomyces cerevisiae}
Length = 802
Score = 29.1 bits (65), Expect = 2.5
Identities = 20/125 (16%), Positives = 38/125 (30%), Gaps = 26/125 (20%)
Query: 77 PKSRAPVECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQ--HMLTHM 134
S + C+YCG + + + C C + F N H++ H+
Sbjct: 6 SPSASDNSCAYCG--IDSAKCVIK------------CNSCKKWFCNTKNGTSSSHIVNHL 51
Query: 135 QKDTSISIDVISEIK----KFKCDQCDYATKDKYNLGTHIKRRHTKEYSVLCTQCGFGCY 190
+ + + +C C K+ + LG K +V+ C C
Sbjct: 52 VLSHHNVVSLHPDSDLGDTVLECYNC--GRKNVFLLGF----VSAKSEAVVVLLCRIPCA 105
Query: 191 TNREL 195
+
Sbjct: 106 QTKNA 110
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 38
Score = 25.9 bits (56), Expect = 2.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 154 DQCDYATKDKYNLGTHIK 171
D CDY+T DKY L H+K
Sbjct: 15 DGCDYSTPDKYKLQAHLK 32
>3mtk_A Diguanylate cyclase/phosphodiesterase; structural genomics, PSI-2,
protein structure initiative; 2.24A
{Caldicellulosiruptor saccharolyticus}
Length = 178
Score = 28.2 bits (64), Expect = 2.8
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 217 FTKRMNVKTHERMKHEN 233
F + ++T E H +
Sbjct: 162 FKPSIEIQTLEHHHHHH 178
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 28.6 bits (63), Expect = 2.9
Identities = 3/38 (7%), Positives = 13/38 (34%)
Query: 194 ELEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKH 231
+ H+ L G + + ++ +++ +
Sbjct: 195 QETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSV 232
Score = 27.5 bits (60), Expect = 6.2
Identities = 8/46 (17%), Positives = 14/46 (30%)
Query: 85 CSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHM 130
K L + T H K E+ ++ N L+ +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPI 228
Score = 27.1 bits (59), Expect = 8.3
Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 212 YCDKTFTKRMNVKTHERMKHENH---KPYECYICNKILVSRGRLNEHLNQVHLAQ 263
Y + + KR++ + E + K + ++L + L ++ L Q
Sbjct: 182 YSED-YMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 26.9 bits (59), Expect = 3.0
Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 4/70 (5%)
Query: 195 LEEHQILTHGAEPYHCKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNE 254
H+ C++CD + +K HE + + C C + V L
Sbjct: 5 SSGHEETECPLRLAVCQHCDLELSIL-KLKEHE--DYCGARTELCGNCGRN-VLVKDLKT 60
Query: 255 HLNQVHLAQR 264
H
Sbjct: 61 HPEVCGREGS 70
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 28.1 bits (62), Expect = 3.5
Identities = 20/119 (16%), Positives = 40/119 (33%), Gaps = 9/119 (7%)
Query: 210 CKYCDKTFTKRMNVKTHERMKHENHKPYECYICNKILVSRGRLNEHLNQVHLAQRFECKL 269
C C K V+ H++ + C +C K L S + H ++++ CK
Sbjct: 10 CGVCQKAVYFAEEVQCEGSSFHKSC--FLCMVCKKNLDSTT-VAVHGDEIY------CKS 60
Query: 270 CHKTIVSEKTFKKHMALHSDAKPFVCNICGKDFKLKYYVNLHMRTHTRIRPTFECDVCH 328
C+ K K M + + ++ K + + + + + D C
Sbjct: 61 CYGKKYGPKGKGKGMGAGTLSTDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCP 119
>2air_B Aspartate carbamoyltransferase regulatory chain; aspartate
transcarbamylase, alanosine, carbamyl phosphate, T
transferase; HET: AL0; 2.00A {Escherichia coli} SCOP:
d.58.2.1 g.41.7.1 PDB: 1ezz_B 1f1b_B* 1i5o_B* 1q95_G*
1r0b_G* 1r0c_B* 1raa_B* 1rab_B* 1rac_B* 1rad_B* 1rae_B*
1raf_B* 1rag_B* 1rah_B* 1rai_B* 1sku_B 1tth_B* 1tu0_B
1tug_B* 1xjw_B* ...
Length = 153
Score = 27.7 bits (62), Expect = 3.5
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
Query: 189 CYTNRELEEHQ---ILTHGAEPYHCKYCDKTFTK 219
C ++ E CKYC+K F+
Sbjct: 114 CISHAEPVSSSFAVRKRANDIALKCKYCEKEFSH 147
>2ct5_A Zinc finger BED domain containing protein 1; DREF homolog, putative
C-like transposable element, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.6
Length = 73
Score = 26.3 bits (57), Expect = 4.9
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 143 DVISEIKKFKCDQCDYATKDK---YNLGTHIKRRHTKEYSVLCTQ 184
I + KK C C NL H+++ H +E+
Sbjct: 22 GCILQWKKIYCRICMAQIAYSGNTSNLSYHLEKNHPEEFCEFVKS 66
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 25.2 bits (54), Expect = 5.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 237 YECYICNKILVSRGRLNEHLNQVHLA 262
Y C +C K VS RL H+ +VH A
Sbjct: 8 YVCALCLKKFVSSIRLRSHIREVHGA 33
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 27.0 bits (59), Expect = 5.5
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 204 GAEPYHCKYCDKTFTKRMNVKTHERMKHENHK 235
G + C C + F N+KTH R K +HK
Sbjct: 47 GGGLHRCLACARYFIDSTNLKTHFRSK--DHK 76
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase,
gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 1z1w_A 3q7j_A*
Length = 780
Score = 28.1 bits (63), Expect = 5.9
Identities = 9/89 (10%), Positives = 27/89 (30%), Gaps = 7/89 (7%)
Query: 228 RMKHENHKPYECYICNKILVSRGRLNEHLNQVHLAQRFECKLCHKTIVSE--KTFKKHMA 285
+ H + +++ G+ +E+L + ++ E K FK +
Sbjct: 557 MLTHAFDDDARAFCRSRMQFLTGKQDENLKIALGRVSRLYVMVDESYAEEMSKLFKDFDS 616
Query: 286 LHSDAKPFVCNICGK-----DFKLKYYVN 309
+ + + L+ + +
Sbjct: 617 AEPEMRSSIATAYALVTGDLKGLLEKFRS 645
>2be7_D Aspartate carbamoyltransferase regulatory chain; atcase,
psychrophilic, cold adaptation, alloste holoenzyme;
2.85A {Moritella profunda}
Length = 153
Score = 27.0 bits (60), Expect = 6.3
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 189 CYTNRELEEHQ---ILTHGAEPYHCKYCDKTFTK 219
C T+ E T G CKYC+KTF+K
Sbjct: 113 CITHGEPVTSSFSIKKTKGNIGLKCKYCEKTFSK 146
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide;
transcription, mRNA, multiprotein complex; HET: UTP;
2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB:
1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J
1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J*
1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Length = 70
Score = 25.8 bits (57), Expect = 6.6
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 10/70 (14%)
Query: 82 PVECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLTHMQKDTSIS 141
PV C CGKV+ DK ++ + + R Y ++ +LTH
Sbjct: 4 PVRCFSCGKVVG--DKWESYLNLLQEDELDEGTALSRLGLKRYCCRRMILTH-------- 53
Query: 142 IDVISEIKKF 151
+D+I + ++
Sbjct: 54 VDLIEKFLRY 63
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 24.6 bits (54), Expect = 6.9
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 291 KPFVCNI--CGKDFKLKYYVNLHMRTHT 316
K +C+I CGK + ++ H+R HT
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHT 34
Score = 24.2 bits (53), Expect = 9.5
Identities = 6/24 (25%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 207 PYHCKY--CDKTFTKRMNVKTHER 228
+ C C K + K +++ H R
Sbjct: 8 QHICHIQGCGKVYGKTSHLRAHLR 31
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 24.8 bits (53), Expect = 6.9
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 111 YPCEQCDRKFTNGYKLKQHML 131
+ C +CD +F+ LK+H L
Sbjct: 11 FFCNECDCRFSEEASLKRHTL 31
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 25.1 bits (54), Expect = 7.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 232 ENHKPYECYICNKILVSRGRLNEHLNQVHLAQ 263
+ KPY C IC K +R L+ H HLA+
Sbjct: 3 DRDKPYACDICGKRYKNRPGLSYHYAHSHLAE 34
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 24.3 bits (52), Expect = 8.1
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 347 KSHLCFVCGAGFVNDAGLKVHMRKH 371
K C +CG F + L H+R+H
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQH 25
Score = 24.3 bits (52), Expect = 9.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 291 KPFVCNICGKDFKLKYYVNLHMRTHT 316
KP C +CGK F + H+R HT
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHT 26
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 26.6 bits (58), Expect = 9.0
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 73 DHKKPKSRAPVECSYCGKVLSRKDKLTRHIAAVHSGKEYPCEQCDRKFTNGYKLKQHMLT 132
DH+ A ++C C + + + HI ++ C+ C + H
Sbjct: 101 DHQAHCEFALMDCPQCQRPFQKFH-INIHILKDCPRRQVSCDNCAASMA-FEDKEIHDQN 158
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF
zinc finger, homodimer, metal binding protein; NMR
{Escherichia coli} SCOP: g.39.1.11
Length = 67
Score = 25.2 bits (55), Expect = 9.2
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 67 QTMLMLDHKKPKSRAPVECSYCGK 90
D +K S + CS+CGK
Sbjct: 3 HHHHHTDKRKDGSGKLLYCSFCGK 26
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.135 0.428
Gapped
Lambda K H
0.267 0.0680 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,445,479
Number of extensions: 311106
Number of successful extensions: 3531
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2822
Number of HSP's successfully gapped: 1303
Length of query: 372
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 277
Effective length of database: 4,049,298
Effective search space: 1121655546
Effective search space used: 1121655546
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.2 bits)