RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16829
(243 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 62.8 bits (154), Expect = 2e-12
Identities = 50/181 (27%), Positives = 81/181 (44%), Gaps = 28/181 (15%)
Query: 61 TCVECNEDFINVNDFVSHLRGHDSTS---HVCDICLEAFPSSDDRDLHFLSHLTSDGLYQ 117
C EC + F + H R H T + C C ++F D H +H T + Y+
Sbjct: 23 ACPECGKSFSRSDHLAEHQRTH--TGEKPYKCPECGKSFSDKKDLTRHQRTH-TGEKPYK 79
Query: 118 CNECEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKI-----KEH 167
C EC GK + +L+ H++ H EK Y C CG+ F Q + H+ K
Sbjct: 80 CPEC---GKSFSQRANLRAHQRTHTGEKPYA--CPECGKSFSQLAHLRAHQRTHTGEK-- 132
Query: 168 NAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGV 227
P++C C K F+ + + +H++ H E P++C C K + + + H++ H G
Sbjct: 133 ---PYKCPECGKSFSREDNLHTHQRTHTGEK--PYKCPECGKSFSRRDALNVHQRTHTGK 187
Query: 228 K 228
K
Sbjct: 188 K 188
Score = 52.8 bits (128), Expect = 7e-09
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
Query: 129 THLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKI-----KEHNAFPFQCEICHKIF 181
+ + EK Y C CG+ F +++ + H+ K P++C C K F
Sbjct: 7 SSSVAQAALEPGEKPYA--CPECGKSFSRSDHLAEHQRTHTGEK-----PYKCPECGKSF 59
Query: 182 TNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HEC 231
++K + H++ H E P++C C K + + + + H++ H G K + C
Sbjct: 60 SDKKDLTRHQRTHTGEK--PYKCPECGKSFSQRANLRAHQRTHTGEKPYAC 108
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 59.4 bits (145), Expect = 7e-12
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 17/110 (15%)
Query: 130 HLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKI-----KEHNAFPFQCEICHKIFT 182
+ +K + C CGR F ++ + +H+ + P+ C+ICHK F
Sbjct: 4 GSSGGRLPSKTKKEFI--CKFCGRHFTKSYNLLIHERTHTDER-----PYTCDICHKAFR 56
Query: 183 NKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HEC 231
+ + H+ H E P++C+ C K + R+ HK +H+
Sbjct: 57 RQDHLRDHRYIHSKEK--PFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 41.3 bits (98), Expect = 2e-05
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 10/53 (18%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
Y C+ C K R HL+ H+ IH EK + C CG+GF Q+ + +HK
Sbjct: 46 YTCDIC---HKAFRRQDHLRDHRYIHSKEKPFK--CQECGKGFCQSRTLAVHK 93
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 58.7 bits (143), Expect = 9e-12
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAF 170
+QC C + R HL TH + H EK + CD+CGR F +++E H+ +
Sbjct: 4 FQCRIC---MRNFSRSDHLTTHIRTHTGEKPFA--CDICGRKFARSDERKRHR-DIQHIL 57
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHK 195
P + ++ + + + K
Sbjct: 58 PILEDKVEELLSKNYHLENEVARLK 82
Score = 38.2 bits (90), Expect = 2e-04
Identities = 16/107 (14%), Positives = 27/107 (25%), Gaps = 37/107 (34%)
Query: 61 TCVECNEDFINVNDFVSHLRGHDSTSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNE 120
C C +F + +H+R H T + + C+
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTH----------------------------TGEKPFACDI 36
Query: 121 CEFVGK---RLTHLKTHKKIH-EKVYGVYCDVCGRGFHQNNEVTLHK 163
C G+ R K H+ I D +N +
Sbjct: 37 C---GRKFARSDERKRHRDIQHILPI--LEDKVEELLSKNYHLENEV 78
Score = 38.2 bits (90), Expect = 2e-04
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVKHE 230
PFQC IC + F+ + +H + H E P+ C+ C + + KRH+ + +
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEK--PFACDICGRKFARSDERKRHRDIQHILPIL 60
Query: 231 CE 232
+
Sbjct: 61 ED 62
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 54.7 bits (133), Expect = 2e-10
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 20/89 (22%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKI-----K 165
+ C C GK R + L TH IH + Y C CG+ FHQ +++ H K
Sbjct: 2 FDCKIC---GKSFKRSSTLSTHLLIHSDTRPYP--CQYCGKRFHQKSDMKKHTFIHTGEK 56
Query: 166 EHNAFPFQCEICHKIFTNKSTMWSHKKAH 194
P +C++C K F+ S + +H + H
Sbjct: 57 -----PHKCQVCGKAFSQSSNLITHSRKH 80
Score = 38.2 bits (90), Expect = 2e-04
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 172 FQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HE 230
F C+IC K F ST+ +H H P+ C++C K + K K+H +H G K H+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTR--PYPCQYCGKRFHQKSDMKKHTFIHTGEKPHK 59
Query: 231 CE 232
C+
Sbjct: 60 CQ 61
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 55.1 bits (134), Expect = 2e-10
Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 22/99 (22%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKI-----K 165
++C C GK R LKTH + H K Y C C ++ + H +
Sbjct: 9 HKCEVC---GKCFSRKDKLKTHMRCHTGVKPYK--CKTCDYAAADSSSLNKHLRIHSDER 63
Query: 166 EHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC 204
PF+C+IC N S + H ++H +
Sbjct: 64 -----PFKCQICPYASRNSSQLTVHLRSHTGDS--GPSS 95
Score = 41.6 bits (99), Expect = 2e-05
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-H 229
P +CE+C K F+ K + +H + H P++C+ C + S +H ++H +
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVK--PYKCKTCDYAAADSSSLNKHLRIHSDERPF 65
Query: 230 ECE 232
+C+
Sbjct: 66 KCQ 68
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 53.2 bits (128), Expect = 8e-10
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPED-QIPWECEHCHKVYPNKRSYKRHKQV-HLGVK 228
QCEIC K+++ H++ H + + CE C K + S H+ H +
Sbjct: 7 GLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66
Query: 229 HECEGGPIPA 238
+ P+
Sbjct: 67 LAPQESSGPS 76
Score = 47.0 bits (112), Expect = 1e-07
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIHEKVYGVY---CDVCGRGFHQNNEVTLHKIKEHNAFPF 172
QC C F ++ L H++ H + C+ CG+ F + + V H+ K H A
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 173 QCE 175
+
Sbjct: 68 APQ 70
Score = 24.7 bits (54), Expect = 9.5
Identities = 15/73 (20%), Positives = 17/73 (23%), Gaps = 8/73 (10%)
Query: 53 GEDKPLLLTCVECNEDFINVNDFVSHLRGHDSTS----HVCDICLEAFPSSDDRDLHFLS 108
G L C C H R H T C+ C + F D H
Sbjct: 4 GS-SGL--QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
Query: 109 HLTSDGLYQCNEC 121
L E
Sbjct: 61 S-HPALLLAPQES 72
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 54.0 bits (131), Expect = 9e-10
Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 16/122 (13%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKE--HN 168
+C C K +LK H + H EK + C CG+ + + + H+ + +
Sbjct: 8 VECPTC---HKKFLSKYYLKVHNRKHTGEKPFE--CPKCGKCYFRKENLLEHEARNCMNR 62
Query: 169 A-FPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQ-VHLG 226
+ F C +C + F + + H +H E P++C C + + K+ + H +H G
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEM--PYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Query: 227 VK 228
Sbjct: 121 PS 122
Score = 40.6 bits (96), Expect = 5e-05
Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 19/118 (16%)
Query: 61 TCVECNEDFINVNDFVSHLRGHDSTS---HVCDICLEAFPSSDDRDLH---FLSHLTSDG 114
C C++ F++ H R H T C C + + ++ H + S+
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKH--TGEKPFECPKCGKCYFRKENLLEHEARNCMN-RSEQ 65
Query: 115 LYQCNECEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEH 167
++ C+ C + R L+ H H E Y C C + F Q ++ H IK H
Sbjct: 66 VFTCSVC---QETFRRRMELRLHMVSHTGEMPYK--CSSCSQQFMQKKDLQSHMIKLH 118
Score = 37.9 bits (89), Expect = 6e-04
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRH---KQVHLGV 227
+C CHK F +K + H + H E P+EC C K Y K + H ++
Sbjct: 7 GVECPTCHKKFLSKYYLKVHNRKHTGEK--PFECPKCGKCYFRKENLLEHEARNCMNRSE 64
Query: 228 K-HEC 231
+ C
Sbjct: 65 QVFTC 69
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 55.3 bits (134), Expect = 1e-09
Identities = 32/133 (24%), Positives = 49/133 (36%), Gaps = 25/133 (18%)
Query: 116 YQCN--ECEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKI---- 164
Y C+ +C G + L+ H H EK + + C +GF + +T H +
Sbjct: 13 YICSFADC---GAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTG 69
Query: 165 -KEHNAFPFQCE--ICHKIFTNKSTMWSHKKAHKPEDQIPWEC--EHCHKVYPNKRSYKR 219
K F C+ C FT K+ M H + C E+C K + K
Sbjct: 70 EK-----NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKV 124
Query: 220 HKQVHLGVK-HEC 231
H+ H +EC
Sbjct: 125 HQFSHTQQLPYEC 137
Score = 52.2 bits (126), Expect = 1e-08
Identities = 35/126 (27%), Positives = 50/126 (39%), Gaps = 14/126 (11%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHN-- 168
+ C E E K L HL H H EK + D C F + H + HN
Sbjct: 43 FPCKE-EGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIK 101
Query: 169 AFPFQCEI--CHKIFTNKSTMWSHKKAHKPEDQIPWECEH--CHKVYPNKRSYKRHKQVH 224
+ C C K F + + H+ +H + P+EC H C K + KRH++VH
Sbjct: 102 ICVYVCHFENCGKAFKKHNQLKVHQFSHTQQL--PYECPHEGCDKRFSLPSRLKRHEKVH 159
Query: 225 LGVKHE 230
G +
Sbjct: 160 AGYPCK 165
Score = 48.4 bits (116), Expect = 3e-07
Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 15/120 (12%)
Query: 116 YQCNE--CEFVGKRLTHLKTHKKIH--EKV--YGVYCDVCGRGFHQNNEVTLHKIKEHNA 169
+ C+ C+ ++K H K+ Y + + CG+ F ++N++ +H+
Sbjct: 73 FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQ 132
Query: 170 FPFQC--EICHKIFTNKSTMWSHKKAH---KPEDQIPWECEHCHKVYPNKRSYKRHKQVH 224
P++C E C K F+ S + H+K H + C K + K + H
Sbjct: 133 LPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKK--DDSCSFVGKTWTLYL--KHVAECH 188
Score = 27.2 bits (61), Expect = 4.1
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 111 TSDGLYQCNECEFVGKRLT-HLKTHKKIHE 139
+ + C FVGK T +LK + H+
Sbjct: 160 AGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 52.5 bits (127), Expect = 2e-09
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 14/85 (16%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEH--- 167
C C GK + HL HK H EK Y C VCG F + + ++ H + H
Sbjct: 8 VACEIC---GKIFRDVYHLNRHKLSHSGEKPYS--CPVCGLRFKRKDRMSYHV-RSHDGS 61
Query: 168 NAFPFQCEICHKIFTNKSTMWSHKK 192
P+ C+ C K F+ + H K
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIK 86
Score = 32.1 bits (74), Expect = 0.033
Identities = 22/114 (19%), Positives = 33/114 (28%), Gaps = 40/114 (35%)
Query: 61 TCVECNEDFINVNDFVSHLRGHDSTSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNE 120
C C + F +V H H + + Y C
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSH----------------------------SGEKPYSCPV 40
Query: 121 CEFVGK---RLTHLKTHKKIH----EKVYGVYCDVCGRGFHQNNEVTLHKIKEH 167
C G R + H + H K Y C CG+GF + + + H + H
Sbjct: 41 C---GLRFKRKDRMSYHVRSHDGSVGKPYI--CQSCGKGFSRPDHLNGHIKQVH 89
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 52.1 bits (126), Expect = 4e-09
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 24/123 (19%)
Query: 116 YQCNE--CEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK----- 163
+ C C K +L+HL+ H + H EK Y C R F +++++ H+
Sbjct: 7 FMCAYPGC---NKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG 63
Query: 164 IKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE--HCHKVYPNKRSYKRHK 221
+K PFQC+ C + F+ + +H + H E P+ C C K + RH
Sbjct: 64 VK-----PFQCKTCQRKFSRSDHLKTHTRTHTGEK--PFSCRWPSCQKKFARSDELVRHH 116
Query: 222 QVH 224
+H
Sbjct: 117 NMH 119
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 51.0 bits (123), Expect = 6e-09
Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 10/86 (11%)
Query: 130 HLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIK---EHNAF-PFQCEICHKIFTN 183
+ + H EK Y C C + F Q + +H + + F C C K FT
Sbjct: 2 SSGSSGRTHTGEKPYA--CSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTR 59
Query: 184 KSTMWSHKKAHKPEDQIPWECEHCHK 209
++TM H D E E+
Sbjct: 60 RNTMARHADNCAGPD--GVEGENSGP 83
Score = 41.7 bits (99), Expect = 9e-06
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQI--PWECEHCHKVYPNKRSYKRHKQVHLGVK 228
P+ C C K F K + H K + + + + C C K + + + RH G
Sbjct: 15 PYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPD 74
Query: 229 -HECE 232
E E
Sbjct: 75 GVEGE 79
Score = 32.5 bits (75), Expect = 0.022
Identities = 13/73 (17%), Positives = 21/73 (28%), Gaps = 13/73 (17%)
Query: 89 CDICLEAFPSSDDRDLHFLSH---LTSDGLYQCNECEFVGK---RLTHLKTHKKIH--EK 140
C C + F D+HF + + C++C GK R + H
Sbjct: 18 CSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKC---GKTFTRRNTMARHADNCAGPD 74
Query: 141 VYGVYCDVCGRGF 153
+ G
Sbjct: 75 GVE--GENSGPSS 85
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 51.4 bits (124), Expect = 2e-08
Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 25/154 (16%)
Query: 61 TCVECNEDFINVNDFVSHLRGHDSTSHV-------------CDICLEAFPSSDDRDLHFL 107
C+++F + L H ++ H+ C L F + +H
Sbjct: 5 RWDGCSQEFDSQ----EQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 108 SHLTSDGLYQCN--ECEFVGKRLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
H T + ++C C RL +LKTH + H EK Y + C + F ++ H+
Sbjct: 61 RH-TGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQ 119
Query: 164 IKEH-NAFPFQCEI--CHKIFTNKSTMWSHKKAH 194
+ H N P+ C++ C K +T+ S++ H K
Sbjct: 120 NRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 31.8 bits (73), Expect = 0.096
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 11/70 (15%)
Query: 171 PFQCEICHKIFTNKSTMWSH---KKAHKPEDQIPWECEHCHKVYPNK---RSY--KRHKQ 222
+ + C + F ++ + H + H + C + Y H +
Sbjct: 3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERK--EFVCHWGGCSRELRPFKAQYMLVVHMR 60
Query: 223 VHLGVK-HEC 231
H G K H+C
Sbjct: 61 RHTGEKPHKC 70
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 49.4 bits (119), Expect = 2e-08
Identities = 21/102 (20%), Positives = 29/102 (28%), Gaps = 33/102 (32%)
Query: 130 HLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTM 187
+ + H EK P++C ICH FT TM
Sbjct: 2 SSGSSGRTHSGEK------------------------------PYECYICHARFTQSGTM 31
Query: 188 WSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRH-KQVHLGVK 228
H E+ + C HC V K H ++ H
Sbjct: 32 KMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSG 73
Score = 38.7 bits (91), Expect = 1e-04
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 12/59 (20%)
Query: 116 YQCNECEFVGKRLT---HLKTHKKIH----EKVYGVYCDVCGRGFHQNNEVTLHKIKEH 167
Y+C C R T +K H + +C C + +++ +H K+H
Sbjct: 16 YECYIC---HARFTQSGTMKMHILQKHTENVAKF--HCPHCDTVIARKSDLGVHLRKQH 69
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 49.4 bits (119), Expect = 2e-08
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQ 173
C + +HLK H + H EK Y D CG F +++E+T H K PFQ
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 174 CEICHKIFTNKSTMWSHKKAH 194
C+ C + F+ + H K H
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 34.0 bits (79), Expect = 0.006
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 61 TCVECNEDFINVNDFVSHLRGHDSTS---HVCDI--CLEAFPSSDDRDLHFLSHLTSDGL 115
C + + + +HLR H T + CD C F SD+ H+ H T
Sbjct: 9 DYAGCGKTYTKSSHLKAHLRTH--TGEKPYHCDWDGCGWKFARSDELTRHYRKH-TGHRP 65
Query: 116 YQCNECEFVGKRLTHLKTHKKIH 138
+QC +C+ R HL H K H
Sbjct: 66 FQCQKCDRAFSRSDHLALHMKRH 88
Score = 31.7 bits (73), Expect = 0.036
Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 6/93 (6%)
Query: 135 KKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQC--EICHKIFTNKSTMWSHKK 192
K+ CG+ + +++ + H P+ C + C F + H +
Sbjct: 1 KRTATHTC--DYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR 58
Query: 193 AHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHL 225
H P++C+ C + + H + H
Sbjct: 59 KHTGH--RPFQCQKCDRAFSRSDHLALHMKRHF 89
Score = 29.4 bits (67), Expect = 0.24
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 170 FPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC--EHCHKVYPNKRSYKRHKQVHLGV 227
C K +T S + +H + H E P+ C + C + RH + H G
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEK--PYHCDWDGCGWKFARSDELTRHYRKHTGH 63
Query: 228 K-HECE 232
+ +C+
Sbjct: 64 RPFQCQ 69
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 49.0 bits (118), Expect = 3e-08
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 22/91 (24%)
Query: 116 YQC--NECEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKI---- 164
Y C C + + L H +IH +K + C +C R F +++ +T H
Sbjct: 5 YACPVESC---DRRFSQSGSLTRHIRIHTGQKPFQ--CRICMRNFSRSDHLTTHIRTHTG 59
Query: 165 -KEHNAFPFQCEICHKIFTNKSTMWSHKKAH 194
K PF C+IC + F H K H
Sbjct: 60 EK-----PFACDICGRKFARSDERKRHTKIH 85
Score = 45.9 bits (110), Expect = 4e-07
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 12/95 (12%)
Query: 139 EKVYGVYCDVCGRGFHQNNEVTLHKI-----KEHNAFPFQCEICHKIFTNKSTMWSHKKA 193
E+ Y + C R F Q+ +T H K PFQC IC + F+ + +H +
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQK-----PFQCRICMRNFSRSDHLTTHIRT 56
Query: 194 HKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK 228
H E P+ C+ C + + KRH ++HL K
Sbjct: 57 HTGEK--PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 26.3 bits (59), Expect = 3.2
Identities = 17/85 (20%), Positives = 26/85 (30%), Gaps = 36/85 (42%)
Query: 61 TCVECNEDFINVNDFVSHLRGHDSTSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNE 120
C C +F + +H+R H T + + C+
Sbjct: 36 QCRICMRNFSRSDHLTTHIRTH----------------------------TGEKPFACDI 67
Query: 121 CEFVGK---RLTHLKTHKKIH--EK 140
C G+ R K H KIH +K
Sbjct: 68 C---GRKFARSDERKRHTKIHLRQK 89
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 49.0 bits (116), Expect = 6e-08
Identities = 13/101 (12%), Positives = 27/101 (26%), Gaps = 7/101 (6%)
Query: 125 GKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLH-KIKEHNAF----PFQCEICHK 179
G + K + I C C + E+T+H H
Sbjct: 1 GSSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRW 60
Query: 180 IFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRH 220
K ++ + + +C +C + + + H
Sbjct: 61 SKPRKRSLLEMEGKEDAQK--VLKCMYCGHSFESLQDLSVH 99
Score = 33.6 bits (76), Expect = 0.016
Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 5/91 (5%)
Query: 116 YQCNECEFVGKRLTHLKTHKKI--HEKVYGVYCDVCGRGFH---QNNEVTLHKIKEHNAF 170
++C +C L L H H + D + + + KE
Sbjct: 20 FRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQK 79
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIP 201
+C C F + + H K ++
Sbjct: 80 VLKCMYCGHSFESLQDLSVHMIKTKHYQKVS 110
Score = 32.4 bits (73), Expect = 0.033
Identities = 13/108 (12%), Positives = 27/108 (25%), Gaps = 23/108 (21%)
Query: 60 LTCVECNEDFINVNDFVSHLRGHDSTSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCN 119
C +C+ + + + H+ N
Sbjct: 20 FRCKDCSAAYDTLVELTVHMNETGHYRDDNHET-----------------------DNNN 56
Query: 120 ECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEH 167
+ R L + + + C CG F ++++H IK
Sbjct: 57 PKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 47.1 bits (113), Expect = 9e-08
Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 17/77 (22%)
Query: 130 HLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKI-----KEHNAFPFQCEICHKIFT 182
H H + +K Y CD C F + HK K P++C IC F
Sbjct: 4 HHHHHSHMTHSDKPYK--CDRCQASFRYKGNLASHKTVHTGEK-----PYRCNICGAQFN 56
Query: 183 NKSTMWSHKKAH---KP 196
+ + +H + H KP
Sbjct: 57 RPANLKTHTRIHSGEKP 73
Score = 31.7 bits (73), Expect = 0.030
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 14/76 (18%)
Query: 77 SHLRGHDST-----SHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNECEFVGK---RL 128
H H + CD C +F + H H T + Y+CN C G R
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVH-TGEKPYRCNIC---GAQFNRP 58
Query: 129 THLKTHKKIH--EKVY 142
+LKTH +IH EK Y
Sbjct: 59 ANLKTHTRIHSGEKPY 74
Score = 28.2 bits (64), Expect = 0.57
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 185 STMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE 232
H + P++C+ C + K + HK VH G K + C
Sbjct: 3 HHHHHHSHMTHSDK--PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCN 49
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 48.8 bits (117), Expect = 1e-07
Identities = 32/133 (24%), Positives = 46/133 (34%), Gaps = 18/133 (13%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIH--EKVYGVY-------CDVCGRGFHQNNEVTLHKIKE 166
C+ + L TH + C G+ F ++ H I+
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH-IRV 84
Query: 167 H-NAFPFQCEI--CHKIFTNKSTMWSHKKAHKPEDQIPWECEH--CHKVYPNKRSYKRHK 221
H PF C C KIF + HK+ H E P++CE C + + N K+H
Sbjct: 85 HTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEK--PFKCEFEGCDRRFANSSDRKKHM 142
Query: 222 QVHLGVK-HECEG 233
VH K G
Sbjct: 143 HVHTSDKSGPSSG 155
Score = 46.9 bits (112), Expect = 7e-07
Identities = 32/125 (25%), Positives = 46/125 (36%), Gaps = 14/125 (11%)
Query: 120 ECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQ------ 173
G+ + + K I E C R F +E+ H EH P Q
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
Query: 174 ---CEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH--CHKVYPNKRSYKRHKQVHLGVK 228
C K F K + +H + H E P+ C C K++ + K HK+ H G K
Sbjct: 62 WEECPREGKSFKAKYKLVNHIRVHTGEK--PFPCPFPGCGKIFARSENLKIHKRTHTGEK 119
Query: 229 -HECE 232
+CE
Sbjct: 120 PFKCE 124
Score = 39.2 bits (92), Expect = 3e-04
Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 15/117 (12%)
Query: 61 TCVECNEDFINVNDFVSHLRGH----------DSTSHVCDICLEAFPSSDDRDLHFLSHL 110
C+ F +++ V+H+ C ++F + H H
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH- 85
Query: 111 TSDGLYQCN--ECEFVGKRLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
T + + C C + R +LK HK+ H EK + + C R F +++ H
Sbjct: 86 TGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM 142
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.0 bits (121), Expect = 1e-07
Identities = 35/218 (16%), Positives = 63/218 (28%), Gaps = 67/218 (30%)
Query: 11 VLDTV-------------KLMI--RFKGILGSSGLNLLNNESASSQVQYEEDKDYDDGED 55
VL V K+++ RFK + + L+ + + E
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVT-----DFLSAATTTHISLDHHSMTLTPDEV 303
Query: 56 KPLLLTCVECNE-----------------------DFINVNDFVSHLRGHDSTSHVCDIC 92
K LLL ++C D + D H+ D + + +
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV-NCDKLTTIIESS 362
Query: 93 LEAFPSSDDRDLH-----F----------LSHLTSDGLYQCNE---CEFVGKRLTHLKTH 134
L ++ R + F LS + D + + L K
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV-EKQP 421
Query: 135 KKIHEKVYGVYCDVCGRGFHQNNEVTLHK-IKEHNAFP 171
K+ + +Y ++ NE LH+ I +H P
Sbjct: 422 KESTISIPSIYLELKV---KLENEYALHRSIVDHYNIP 456
Score = 29.1 bits (64), Expect = 1.8
Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 39/123 (31%)
Query: 63 VECNEDF----INVNDFVSHLRGHDSTSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQC 118
V+C DF +N+ + ++ L+ D + S +S+ +
Sbjct: 176 VQCKMDFKIFWLNL--------KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 119 NECEFVGKRLTHLKTHKKIHEKVYGVYC-----DVCGRGFHQNNEVTLHKIKEHNAFPFQ 173
+ + +RL K ++ C +V N + NAF
Sbjct: 228 HSIQAELRRLLKSKPYEN---------CLLVLLNVQ------NAKAW-------NAFNLS 265
Query: 174 CEI 176
C+I
Sbjct: 266 CKI 268
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 46.5 bits (111), Expect = 2e-07
Identities = 17/69 (24%), Positives = 31/69 (44%)
Query: 126 KRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKS 185
+ +L + + Y + C R F +++E+T H PFQC IC + F+
Sbjct: 4 HPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSD 63
Query: 186 TMWSHKKAH 194
+ +H + H
Sbjct: 64 HLTTHIRTH 72
Score = 25.3 bits (56), Expect = 6.0
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWEC--EHCHKVYPNKRSYKRHKQVHLGVK-HECE 232
++ + P+ C E C + + RH ++H G K +C
Sbjct: 7 NNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCR 53
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 46.9 bits (112), Expect = 2e-07
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 127 RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNK 184
+ +HLK H + H EK Y + C F +++E+T H K A PFQC +C++ F+
Sbjct: 29 KSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRS 88
Query: 185 STMWSHKKAH 194
+ H K H
Sbjct: 89 DHLALHMKRH 98
Score = 36.8 bits (86), Expect = 8e-04
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 10/71 (14%)
Query: 77 SHLRGHDSTSH------VCDI--CLEAFPSSDDRDLHFLSHLTSDGLYQCNECEFVGKRL 128
SHL+ H T H C C F SD+ H+ H T +QC C R
Sbjct: 31 SHLKAHLRT-HTGEKPYKCTWEGCDWRFARSDELTRHYRKH-TGAKPFQCGVCNRSFSRS 88
Query: 129 THLKTHKKIHE 139
HL H K H+
Sbjct: 89 DHLALHMKRHQ 99
Score = 29.1 bits (66), Expect = 0.45
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 171 PFQCEI--CHKIFTNKSTMWSHKKAHKPEDQIPWEC--EHCHKVYPNKRSYKRHKQVHLG 226
C+ C K++T S + +H + H E P++C E C + RH + H G
Sbjct: 15 IHYCDYPGCTKVYTKSSHLKAHLRTHTGEK--PYKCTWEGCDWRFARSDELTRHYRKHTG 72
Query: 227 VK-HECE 232
K +C
Sbjct: 73 AKPFQCG 79
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 46.7 bits (112), Expect = 3e-07
Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 25/104 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK-----IK 165
Y C +C GK + H +H + YG C VCG+ F + + H IK
Sbjct: 11 YPC-QC---GKSFTHKSQRDRHMSMHLGLRPYG--CGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 166 EHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHK 209
P++C IC K F + + H+ +E +
Sbjct: 65 -----PYECNICAKRFMWRDSF--HRHVTSCTK--SYEAAKAEQ 99
Score = 42.0 bits (100), Expect = 1e-05
Identities = 20/83 (24%), Positives = 28/83 (33%), Gaps = 26/83 (31%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLH-------K 163
Y C C GK HL H KIH K Y C++C + F + + H K
Sbjct: 38 YGCGVC---GKKFKMKHHLVGHMKIHTGIKPYE--CNICAKRFMWRD--SFHRHVTSCTK 90
Query: 164 IKEHNAFPFQCEICHKIFTNKST 186
++ + T S
Sbjct: 91 -------SYEAAKAEQNTTEASG 106
Score = 39.7 bits (94), Expect = 8e-05
Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 20/104 (19%)
Query: 136 KIH--EKVYGVYCDVCGRGFHQNNEVTLHKI-----KEHNAFPFQCEICHKIFTNKSTMW 188
+K+Y C CG+ F ++ H + P+ C +C K F K +
Sbjct: 3 SGSSGDKLYP--CQ-CGKSFTHKSQRDRHMSMHLGLR-----PYGCGVCGKKFKMKHHLV 54
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HEC 231
H K H P+EC C K + + S+ H+ V K +E
Sbjct: 55 GHMKIHTGIK--PYECNICAKRFMWRDSF--HRHVTSCTKSYEA 94
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 46.4 bits (111), Expect = 5e-07
Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 11/117 (9%)
Query: 54 EDKPLLLTCVECNEDFINVNDFVSHLRGHDSTSHVCDICLEAFPSSDDRDLHFLSHLTSD 113
E + + C + F + + HL H HVC C +AF S H L H T +
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVH-TGE 60
Query: 114 GLYQCN--ECEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+QC C GK +L+TH +IH ++ Y D C + F Q+ + H
Sbjct: 61 KPFQCTFEGC---GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 45.6 bits (109), Expect = 9e-07
Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 27/128 (21%)
Query: 116 YQC--NECEFVGK---RLTHLKTHKKIH-EKVYGVYCDVCGRGFHQNNEVTLHKI----- 164
C C K + ++ H H +V+ C CG+ F +++++ H++
Sbjct: 6 IACPHKGC---TKMFRDNSAMRKHLHTHGPRVHV--CAECGKAFVESSKLKRHQLVHTGE 60
Query: 165 KEHNAFPFQCEI--CHKIFTNKSTMWSHKKAHKPEDQIPWECEH--CHKVYPNKRSYKRH 220
K PFQC C K F+ + +H + H + P+ C C+K + + K H
Sbjct: 61 K-----PFQCTFEGCGKRFSLDFNLRTHVRIHTGDR--PYVCPFDGCNKKFAQSTNLKSH 113
Query: 221 KQVHLGVK 228
H K
Sbjct: 114 ILTHAKAK 121
Score = 38.7 bits (91), Expect = 3e-04
Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 6/98 (6%)
Query: 137 IHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKP 196
+ + C + F N+ + H H C C K F S + H+ H
Sbjct: 1 MEPRTIACPHKGCTKMFRDNSAMRKHL-HTHGPRVHVCAECGKAFVESSKLKRHQLVHTG 59
Query: 197 EDQIPWEC--EHCHKVYPNKRSYKRHKQVHLGVK-HEC 231
E P++C E C K + + + H ++H G + + C
Sbjct: 60 EK--PFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 95
Score = 28.6 bits (65), Expect = 0.94
Identities = 24/94 (25%), Positives = 33/94 (35%), Gaps = 18/94 (19%)
Query: 61 TCVECNEDFINVNDFVSHLRGHDST---SHVCDI--CLEAFPSSDDRDLHFLSHLTSDGL 115
C EC + F+ + H H T C C + F + H H T D
Sbjct: 36 VCAECGKAFVESSKLKRHQLVH--TGEKPFQCTFEGCGKRFSLDFNLRTHVRIH-TGDRP 92
Query: 116 YQC--NECEFVGK---RLTHLKTHKKIH--EKVY 142
Y C + C K + T+LK+H H K
Sbjct: 93 YVCPFDGC---NKKFAQSTNLKSHILTHAKAKNN 123
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 44.0 bits (105), Expect = 8e-07
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEH 167
+ C C + R HLK H + H EK Y C +C R F + + + H K H
Sbjct: 3 FVCEVC---TRAFARQEHLKRHYRSHTNEKPYP--CGLCNRAFTRRDLLIRHAQKIH 54
Score = 34.0 bits (79), Expect = 0.003
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQ-VHLG 226
F CE+C + F + + H ++H E P+ C C++ + + RH Q +H G
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK--PYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 42.5 bits (101), Expect = 4e-06
Identities = 10/57 (17%), Positives = 25/57 (43%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGV 227
++C++C +++T+ S H + + C C K + K + H ++ +
Sbjct: 10 TYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 42.2 bits (100), Expect = 5e-06
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 139 EKVYGVYCDVCGRGFHQNNEVTLHKIKEH--NAFPFQCEICHKIFTNKSTMWSHKKAH 194
E Y C VC R + + H + H N + C C K FT K M +H K
Sbjct: 8 EHTYR--CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 33.3 bits (77), Expect = 0.008
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 87 HVCDICLEAFPSSDDRDLHFLSHL-TSDGLYQCNECEFVGKRLTHLKTHKKIHEKV 141
+ C +C + + H+++ + +Y C C R ++ H KI K+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 43.7 bits (102), Expect = 4e-06
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 3/86 (3%)
Query: 108 SHLTSDGLYQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEH 167
S + + +YQC C L +H+++ C C F H+ K
Sbjct: 9 SPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAA--VCPYCSLRFFSPELKQEHESK-C 65
Query: 168 NAFPFQCEICHKIFTNKSTMWSHKKA 193
C C + F + ++W H+
Sbjct: 66 EYKKLTCLECMRTFKSSFSIWRHQVE 91
Score = 38.3 bits (88), Expect = 3e-04
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 5/76 (6%)
Query: 146 CDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE 205
C +C E H+ NA C C F + H+ + + C
Sbjct: 19 CRLCNAKLSSLLEQGSHERLCRNAAV--CPYCSLRFFSPELKQEHESKCEYK---KLTCL 73
Query: 206 HCHKVYPNKRSYKRHK 221
C + + + S RH+
Sbjct: 74 ECMRTFKSSFSIWRHQ 89
Score = 33.3 bits (75), Expect = 0.019
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 162 HKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHK 221
N +QC +C+ ++ SH++ + C +C + + + H+
Sbjct: 7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAV----CPYCSLRFFSPELKQEHE 62
Query: 222 QVHLGVKHEC 231
K C
Sbjct: 63 SKCEYKKLTC 72
Score = 31.4 bits (70), Expect = 0.075
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 3/76 (3%)
Query: 61 TCVECNEDFINVNDFVSHLRGHDSTSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNE 120
C CN ++ + SH R + + VC C F S + + H C E
Sbjct: 18 QCRLCNAKLSSLLEQGSHERLCRNAA-VCPYCSLRFFSPELKQEHESKC--EYKKLTCLE 74
Query: 121 CEFVGKRLTHLKTHKK 136
C K + H+
Sbjct: 75 CMRTFKSSFSIWRHQV 90
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 42.3 bits (99), Expect = 5e-06
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 11/71 (15%)
Query: 129 THLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKST 186
+KIH ++ C CG F + + ++ K CE C K ++
Sbjct: 4 GSSGKRQKIHLGDRSQK--CSKCGIIFIRRSTLSRRK-------TPMCEKCRKDSCQEAA 54
Query: 187 MWSHKKAHKPE 197
+ + +
Sbjct: 55 LNKDEGNESGK 65
Score = 34.3 bits (78), Expect = 0.004
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 9/58 (15%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK 228
+C C IF +ST+ K CE C K + + + + G K
Sbjct: 18 SQKCSKCGIIFIRRSTLSRRK---------TPMCEKCRKDSCQEAALNKDEGNESGKK 66
Score = 26.5 bits (58), Expect = 2.4
Identities = 11/60 (18%), Positives = 16/60 (26%), Gaps = 10/60 (16%)
Query: 86 SHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNECEFVGKRLTHLKTHKKIH--EKVYG 143
S C C F S L+ C +C + L + +K G
Sbjct: 18 SQKCSKCGIIFIRR--------STLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTSG 69
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 40.1 bits (95), Expect = 4e-05
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 10/53 (18%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
Y+C+EC GK + L H++ H EK Y CD CG+ F Q + + H
Sbjct: 19 YKCDEC---GKSFSHSSDLSKHRRTHTGEKPYK--CDECGKAFIQRSHLIGHH 66
Score = 38.2 bits (90), Expect = 2e-04
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK 228
++C+ C K F++ S + H++ H E P++C+ C K + + H +VH G
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEK--PYKCDECGKAFIQRSHLIGHHRVHTGSG 73
Score = 28.9 bits (66), Expect = 0.28
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 8/32 (25%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVY 142
Y+C+EC GK + +HL H ++H
Sbjct: 47 YKCDEC---GKAFIQRSHLIGHHRVHTGSGPS 75
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 39.8 bits (94), Expect = 4e-05
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 10/53 (18%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
Y C EC GK R + L H+++H EK Y C CG+ F QN+ + H+
Sbjct: 15 YGCVEC---GKAFSRSSILVQHQRVHTGEKPYK--CLECGKAFSQNSGLINHQ 62
Score = 39.0 bits (92), Expect = 9e-05
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 131 LKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMW 188
IH EK YG C CG+ F +++ + H+ P++C C K F+ S +
Sbjct: 2 SSGSSGIHSGEKPYG--CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLI 59
Query: 189 SHKKAH---KP 196
+H++ H
Sbjct: 60 NHQRIHTSGPS 70
Score = 37.1 bits (87), Expect = 4e-04
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK 228
P+ C C K F+ S + H++ H E P++C C K + H+++H
Sbjct: 14 PYGCVECGKAFSRSSILVQHQRVHTGEK--PYKCLECGKAFSQNSGLINHQRIHTSGP 69
Score = 29.4 bits (67), Expect = 0.19
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y+C EC GK + + L H++IH G
Sbjct: 43 YKCLEC---GKAFSQNSGLINHQRIHTSGPSSG 72
Score = 24.7 bits (55), Expect = 8.8
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECE 232
H E P+ C C K + +H++VH G K ++C
Sbjct: 5 SSGIHSGEK--PYGCVECGKAFSRSSILVQHQRVHTGEKPYKCL 46
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 39.9 bits (94), Expect = 4e-05
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 4/82 (4%)
Query: 115 LYQCN--ECEFVGKRLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAF 170
+Y C+ C K+ LK H+ H + Y + C + F + + H+
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 171 PFQCEICHKIFTNKSTMWSHKK 192
+ + C + + H
Sbjct: 61 CKKDDSCSFVGKTWTLYLKHVA 82
Score = 35.3 bits (82), Expect = 0.002
Identities = 19/84 (22%), Positives = 25/84 (29%), Gaps = 9/84 (10%)
Query: 61 TCVECNEDFINVNDFVSHLRGHDSTS---HVCD--ICLEAFPSSDDRDLHFLSHLTSDGL 115
C + F N H H T + C C + F H H
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSH--TQQLPYECPHEGCDKRFSLPSRLKRHEKVH-AGYPC 61
Query: 116 YQCNECEFVGKRLTHLKTH-KKIH 138
+ + C FVGK T H + H
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVAECH 85
Score = 29.5 bits (67), Expect = 0.21
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 174 CEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH--CHKVYPNKRSYKRHKQVHLGVKHE 230
E C K F + + H+ +H + P+EC H C K + KRH++VH G +
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHTQQL--PYECPHEGCDKRFSLPSRLKRHEKVHAGYPCK 62
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 37.9 bits (89), Expect = 2e-04
Identities = 18/75 (24%), Positives = 22/75 (29%), Gaps = 5/75 (6%)
Query: 138 HEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNA-FPFQCE--ICHKIFTNKSTMWSHKKAH 194
CGR F + HK +H F C C K F K + H K H
Sbjct: 4 GSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLH 63
Query: 195 KPEDQIPWECEHCHK 209
+ CE
Sbjct: 64 SDTR--DYICEFSGP 76
Score = 34.4 bits (80), Expect = 0.004
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 171 PFQCEI--CHKIFTNKSTMWSHKK-AHKPEDQIPWECEH--CHKVYPNKRSYKRHKQVHL 225
C+ C +IF+N+ + HKK H + + C C K + K+ K H ++H
Sbjct: 7 GMPCDFPGCGRIFSNRQYLNHHKKYQHIHQK--SFSCPEPACGKSFNFKKHLKEHMKLHS 64
Query: 226 GVK-HECE 232
+ + CE
Sbjct: 65 DTRDYICE 72
Score = 31.4 bits (72), Expect = 0.053
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 116 YQCN--ECEFVGKRLTHLKTHKKI---HEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAF 170
C+ C + +L HKK H+K + CG+ F+ + H +
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 171 PFQCEICHKIF 181
+ CE
Sbjct: 68 DYICEFSGPSS 78
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 37.5 bits (88), Expect = 3e-04
Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+C+EC + L+ H++IH ++ + C+ C Q + ++ H
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFK--CNYCSFDTKQPSNLSKHM 57
Score = 35.9 bits (84), Expect = 8e-04
Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK 228
P +C C ++K+ + H++ H + P++C +C + +H + G
Sbjct: 9 PEKCSECSYSCSSKAALRIHERIHCTDR--PFKCNYCSFDTKQPSNLSKHMKKFHGDM 64
Score = 29.4 bits (67), Expect = 0.21
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 89 CDICLEAFPSSDDRDLHFLSHLTSDGLYQCNECEFVGKRLTHLKTHKKIH--EKVY 142
C C + S +H H +D ++CN C F K+ ++L H K +
Sbjct: 12 CSECSYSCSSKAALRIHERIH-CTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG 66
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 36.6 bits (84), Expect = 4e-04
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 172 FQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK 228
+ CE C S + H + H P+ C +C+ + K + +H + K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVR--PYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 35.8 bits (82), Expect = 7e-04
Identities = 15/48 (31%), Positives = 20/48 (41%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHK 163
Y C EC K+ + LK H + H V +C C F +T H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 35.1 bits (80), Expect = 0.002
Identities = 11/52 (21%), Positives = 20/52 (38%)
Query: 146 CDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPE 197
C+ CG + + + H + P+ C C+ F K + H K+
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 27.8 bits (61), Expect = 0.67
Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Query: 87 HVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNECEFVGKRLTHLKTHKKIH--EK 140
++C+ C H +H T Y C C F K +L H K K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTH-TDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 34.9 bits (81), Expect = 0.001
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNA-FPFQCEICHKIFTN 183
+ K Y C CG+GF + + + H + H + P +C++ ++
Sbjct: 2 SSGSSGSVGKPYI--CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 27.5 bits (62), Expect = 0.66
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 171 PFQCEICHKIFTNKSTMWSH-KKAHKPEDQIPWECEHCHK 209
P+ C+ C K F+ + H K+ H E P +C+
Sbjct: 12 PYICQSCGKGFSRPDHLNGHIKQVHTSER--PHKCQVWVS 49
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 32.5 bits (75), Expect = 0.010
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y CNEC GK R +HL H K H EK G
Sbjct: 13 YGCNEC---GKNFGRHSHLIEHLKRHFREKSSG 42
Score = 27.5 bits (62), Expect = 0.58
Identities = 10/47 (21%), Positives = 14/47 (29%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P+ C C K + H + H K G
Sbjct: 2 SSGSSGSGER--PYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG 46
Score = 24.4 bits (54), Expect = 7.9
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 134 HKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
E+ YG C+ CG+ F +++ + H
Sbjct: 3 SGSSGSGERPYG--CNECGKNFGRHSHLIEHL 32
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 34.1 bits (77), Expect = 0.011
Identities = 17/109 (15%), Positives = 28/109 (25%), Gaps = 3/109 (2%)
Query: 60 LTCVECNEDFINVNDFVSHLRGHDSTSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCN 119
+ E+ + + I L+ + + C
Sbjct: 20 IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLAS-KAISQFVCP 78
Query: 120 ECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHN 168
C LK H + E C VC + F + H K+HN
Sbjct: 79 LCLMPFSSSVSLKQHIRYTEHTK--VCPVCKKEFTSTDSALDHVCKKHN 125
Score = 32.2 bits (72), Expect = 0.060
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 4/68 (5%)
Query: 153 FHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYP 212
+ + F C +C F++ ++ H + + C C K +
Sbjct: 56 LLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEH----TKVCPVCKKEFT 111
Query: 213 NKRSYKRH 220
+ S H
Sbjct: 112 STDSALDH 119
Score = 30.7 bits (68), Expect = 0.19
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 145 YCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSH 190
C +C F + + H + C +C K FT+ + H
Sbjct: 76 VCPLCLMPFSSSVSLKQHIRYTEH--TKVCPVCKKEFTSTDSALDH 119
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 33.0 bits (75), Expect = 0.015
Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 8/76 (10%)
Query: 166 EHNAFPFQCEICHKIFTNKSTMWSH-KKAH-----KPEDQIPWE-CEHCHKVYPNKRSYK 218
+ + C + F+ + +H H + WE C K + K
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 219 RHKQVHLGVK-HECEG 233
H +VH G K G
Sbjct: 80 NHIRVHTGEKSGPSSG 95
Score = 30.3 bits (68), Expect = 0.16
Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 9/70 (12%)
Query: 137 IHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQ---------CEICHKIFTNKSTM 187
I E C R F +E+ H EH P Q C K F K +
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 188 WSHKKAHKPE 197
+H + H E
Sbjct: 79 VNHIRVHTGE 88
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.016
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P++C+ C K + + RH VH K G
Sbjct: 2 SSGSSGTGEK--PFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG 46
Score = 29.0 bits (66), Expect = 0.15
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
++C+ C GK + L H +H EK G
Sbjct: 13 FKCDIC---GKSFCGRSRLNRHSMVHTAEKPSG 42
Score = 28.6 bits (65), Expect = 0.19
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ EK + CD+CG+ F + + H
Sbjct: 2 SSGSSGTGEKPFK--CDICGKSFCGRSRLNRHS 32
Score = 28.6 bits (65), Expect = 0.22
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE 205
PF+C+IC K F +S + H H E P
Sbjct: 12 PFKCDICGKSFCGRSRLNRHSMVHTAEK--PSGPS 44
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 31.7 bits (73), Expect = 0.016
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 8/32 (25%)
Query: 116 YQCNECEFVGKRLT---HLKTHKKIH--EKVY 142
Y+C C G R HL+ H IH
Sbjct: 12 YKCETC---GARFVQVAHLRAHVLIHTGSGPS 40
Score = 27.1 bits (61), Expect = 0.62
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAH---KP 196
P++CE C F + + +H H P
Sbjct: 11 PYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 25.2 bits (56), Expect = 3.4
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 201 PWECEHCHKVYPNKRSYKRHKQVHLGVK 228
P++CE C + + H +H G
Sbjct: 11 PYKCETCGARFVQVAHLRAHVLIHTGSG 38
Score = 24.4 bits (54), Expect = 7.2
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 4/32 (12%)
Query: 134 HKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
EK Y C+ CG F Q + H
Sbjct: 2 SSGSSGGEKPYK--CETCGARFVQVAHLRAHV 31
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 31.4 bits (72), Expect = 0.019
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P++CE C K + +R H VH G K G
Sbjct: 2 SSGSSGTGEK--PYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG 46
Score = 28.3 bits (64), Expect = 0.26
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ EK Y C+ CG+GF ++ H
Sbjct: 2 SSGSSGTGEKPYK--CEECGKGFICRRDLYTHH 32
Score = 27.9 bits (63), Expect = 0.34
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y+C EC GK L TH +H EK G
Sbjct: 13 YKCEEC---GKGFICRRDLYTHHMVHTGEKPSG 42
Score = 27.9 bits (63), Expect = 0.36
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE 205
P++CE C K F + +++H H E P
Sbjct: 12 PYKCEECGKGFICRRDLYTHHMVHTGEK--PSGPS 44
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 31.3 bits (72), Expect = 0.022
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 8/32 (25%)
Query: 116 YQCNECEFVGKR---LTHLKTHKKIH--EKVY 142
Y C C G R L LK+H +IH
Sbjct: 12 YPCEIC---GTRFRHLQTLKSHLRIHTGSGPS 40
Score = 30.2 bits (69), Expect = 0.047
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAH---KP 196
P+ CEIC F + T+ SH + H P
Sbjct: 11 PYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 25.5 bits (57), Expect = 2.7
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 201 PWECEHCHKVYPNKRSYKRHKQVHLGVK 228
P+ CE C + + ++ K H ++H G
Sbjct: 11 PYPCEICGTRFRHLQTLKSHLRIHTGSG 38
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 31.4 bits (72), Expect = 0.025
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
+QC+EC G+ +HL H++IH EK G
Sbjct: 13 HQCHEC---GRGFTLKSHLNQHQRIHTGEKPSG 42
Score = 26.7 bits (60), Expect = 0.90
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAH---KP 196
QC C + FT KS + H++ H KP
Sbjct: 12 SHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 26.0 bits (58), Expect = 1.9
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLH 162
+ K + C CGRGF + + H
Sbjct: 2 SSGSSGSSTKSHQ--CHECGRGFTLKSHLNQH 31
Score = 26.0 bits (58), Expect = 2.0
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK 228
S + +C C + + K +H+++H G K
Sbjct: 2 SSGSSGSSTK--SHQCHECGRGFTLKSHLNQHQRIHTGEK 39
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.025
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y+C+EC GK R THL H++IH + G
Sbjct: 13 YKCSEC---GKAFHRHTHLNEHRRIHTGYRPSG 42
Score = 26.7 bits (60), Expect = 1.1
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ EK Y C CG+ FH++ + H+
Sbjct: 2 SSGSSGSGEKPYK--CSECGKAFHRHTHLNEHR 32
Score = 26.3 bits (59), Expect = 1.2
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P++C C K + H+++H G + G
Sbjct: 2 SSGSSGSGEK--PYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG 46
Score = 25.5 bits (57), Expect = 2.6
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE 205
P++C C K F + + H++ H P
Sbjct: 12 PYKCSECGKAFHRHTHLNEHRRIHTGYR--PSGPS 44
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 34.4 bits (78), Expect = 0.031
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 1/90 (1%)
Query: 26 GSSGLNLLNNESASSQVQYEEDKDYDDGEDKPLLLTCVECNEDFINVNDFVSHLRGHDST 85
SG N + + + SS V + D D + ++ + + +
Sbjct: 56 SQSGPNAVGDSAPSSSVNNDGDIITRPTSDSIAAVANATKPAAVVSDPQSMKVTPIVNPS 115
Query: 86 SHVCDICLEAFPSSDDRDLHF-LSHLTSDG 114
S+VC++C F + H H
Sbjct: 116 SYVCNVCNARFSTMSALSEHLRSDHRDDAS 145
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.5 bits (70), Expect = 0.046
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y+C+EC GK R +HL H+ IH EK G
Sbjct: 13 YKCHEC---GKVFRRNSHLARHQLIHTGEKPSG 42
Score = 27.8 bits (63), Expect = 0.43
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P++C C KV+ RH+ +H G K G
Sbjct: 2 SSGSSGTGEK--PYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG 46
Score = 26.3 bits (59), Expect = 1.4
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ EK Y C CG+ F +N+ + H+
Sbjct: 2 SSGSSGTGEKPYK--CHECGKVFRRNSHLARHQ 32
Score = 26.3 bits (59), Expect = 1.5
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE 205
P++C C K+F S + H+ H E P
Sbjct: 12 PYKCHECGKVFRRNSHLARHQLIHTGEK--PSGPS 44
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.5 bits (70), Expect = 0.047
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIH--EKVYG 143
Y+CNEC V + +HL H +IH EK G
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKPSG 42
Score = 27.5 bits (62), Expect = 0.51
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ EK Y C+ CG+ F QN+ +T H
Sbjct: 2 SSGSSGSGEKPYK--CNECGKVFTQNSHLTNHW 32
Score = 25.9 bits (58), Expect = 1.8
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P++C C KV+ H ++H G K G
Sbjct: 2 SSGSSGSGEK--PYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG 46
Score = 25.5 bits (57), Expect = 2.7
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH 206
P++C C K+FT S + +H + H E P
Sbjct: 12 PYKCNECGKVFTQNSHLTNHWRIHTGEK--PSGPSS 45
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.051
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
++CNEC GK R +HL H ++H EK G
Sbjct: 13 FKCNEC---GKGFGRRSHLAGHLRLHSREKSSG 42
Score = 27.1 bits (61), Expect = 0.83
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC 204
PF+C C K F +S + H + H E
Sbjct: 12 PFKCNECGKGFGRRSHLAGHLRLHSREK--SSGP 43
Score = 26.7 bits (60), Expect = 0.95
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P++C C K + + H ++H K G
Sbjct: 2 SSGSSGSGER--PFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSSG 46
Score = 24.8 bits (55), Expect = 5.0
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLH 162
+ E+ + C+ CG+GF + + + H
Sbjct: 2 SSGSSGSGERPFK--CNECGKGFGRRSHLAGH 31
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.055
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIH--EKVYG 143
Y+CNEC + ++L TH+ IH EK G
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKPSG 42
Score = 29.0 bits (66), Expect = 0.16
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P++C C K + + H+ +H G K G
Sbjct: 2 SSGSSGTGEK--PYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSSG 46
Score = 27.9 bits (63), Expect = 0.43
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ EK Y C+ CG+ F ++ +T H+
Sbjct: 2 SSGSSGTGEKPYK--CNECGKAFRAHSNLTTHQ 32
Score = 26.3 bits (59), Expect = 1.2
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE 205
P++C C K F S + +H+ H E P
Sbjct: 12 PYKCNECGKAFRAHSNLTTHQVIHTGEK--PSGPS 44
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.056
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIH--EKVYG 143
Y+CNEC V + +HL H+ IH EK G
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSG 42
Score = 29.0 bits (66), Expect = 0.17
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + + P++C C KV+ RH+ +H G K G
Sbjct: 2 SSGSSGTGKK--PYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG 46
Score = 27.9 bits (63), Expect = 0.34
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH 206
P++C C K+FT S + H+ H E P
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEK--PSGPSS 45
Score = 27.5 bits (62), Expect = 0.61
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ +K Y C+ CG+ F QN+ + H+
Sbjct: 2 SSGSSGTGKKPYK--CNECGKVFTQNSHLARHR 32
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.067
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIH--EKVYG 143
Y+C+ C + +HL+TH+++H EK G
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPSG 42
Score = 29.0 bits (66), Expect = 0.15
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ EK Y CDVCG+ F Q++ + H+
Sbjct: 2 SSGSSGMGEKCYK--CDVCGKEFSQSSHLQTHQ 32
Score = 26.7 bits (60), Expect = 0.90
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E ++C+ C K + + H++VH G K G
Sbjct: 2 SSGSSGMGEK--CYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSSG 46
Score = 26.0 bits (58), Expect = 2.0
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC 204
++C++C K F+ S + +H++ H E P
Sbjct: 12 CYKCDVCGKEFSQSSHLQTHQRVHTGEK--PSGP 43
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.067
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y CNEC GK + +HL H++IH EK G
Sbjct: 13 YICNEC---GKSFIQKSHLNRHRRIHTGEKPSG 42
Score = 28.2 bits (64), Expect = 0.33
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P+ C C K + K RH+++H G K G
Sbjct: 2 SSGSSGTGEK--PYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSSG 46
Score = 27.5 bits (62), Expect = 0.54
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ EK Y C+ CG+ F Q + + H+
Sbjct: 2 SSGSSGTGEKPYI--CNECGKSFIQKSHLNRHR 32
Score = 26.3 bits (59), Expect = 1.6
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE 205
P+ C C K F KS + H++ H E P
Sbjct: 12 PYICNECGKSFIQKSHLNRHRRIHTGEK--PSGPS 44
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.072
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y+C EC K ++ HL HK++H E+ G
Sbjct: 13 YECKEC---RKTFIQIGHLNQHKRVHTGERSSG 42
Score = 28.3 bits (64), Expect = 0.29
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + + P+EC+ C K + +HK+VH G + G
Sbjct: 2 SSGSSGSGKK--PYECKECRKTFIQIGHLNQHKRVHTGERSSGPSSG 46
Score = 25.2 bits (56), Expect = 3.1
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE 205
P++C+ C K F + HK+ H E
Sbjct: 12 PYECKECRKTFIQIGHLNQHKRVHTGER--SSGPS 44
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 33.3 bits (75), Expect = 0.073
Identities = 17/85 (20%), Positives = 24/85 (28%), Gaps = 5/85 (5%)
Query: 26 GSSGLNLLNNESASSQVQYEEDKDYDDGEDKPLLLTCVECNEDFINVNDFVSHLRGHDST 85
+G+N N S S V D + + + V S
Sbjct: 123 SDTGINNANELSRSGNV----DNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSG 178
Query: 86 -SHVCDICLEAFPSSDDRDLHFLSH 109
+ C +C S D D H SH
Sbjct: 179 HGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 32.1 bits (72), Expect = 0.16
Identities = 5/49 (10%), Positives = 16/49 (32%)
Query: 146 CDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAH 194
+ ++ + +QC +C + + + +H +H
Sbjct: 155 AEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 29.1 bits (64), Expect = 1.8
Identities = 7/54 (12%), Positives = 11/54 (20%), Gaps = 2/54 (3%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVH 224
E I + ++C C V + H H
Sbjct: 152 TRIAEATSAIVSKHPARVGLPPTASSGHG--YQCHVCSAVLFSPLDLDAHVASH 203
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.078
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P+ CE C K + + + H+++H G K G
Sbjct: 2 SSGSSGTGEK--PYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSSG 46
Score = 28.6 bits (65), Expect = 0.20
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y C EC GK + L+ H++IH EK G
Sbjct: 13 YNCEEC---GKAFIHDSQLQEHQRIHTGEKPSG 42
Score = 27.1 bits (61), Expect = 0.71
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE 205
P+ CE C K F + S + H++ H E P
Sbjct: 12 PYNCEECGKAFIHDSQLQEHQRIHTGEK--PSGPS 44
Score = 26.3 bits (59), Expect = 1.2
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ EK Y C+ CG+ F ++++ H+
Sbjct: 2 SSGSSGTGEKPYN--CEECGKAFIHDSQLQEHQ 32
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 29.8 bits (68), Expect = 0.080
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIH--EKVYG 143
Y+CNEC V R + L H+KIH EK G
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKPSG 42
Score = 26.7 bits (60), Expect = 0.94
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH 206
++C C K+F+ S + H+K H E P
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTGEK--PSGPSS 45
Score = 26.7 bits (60), Expect = 1.1
Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ EK Y C+ CG+ F +N++++ H+
Sbjct: 2 SSGSSGTGEKRYK--CNECGKVFSRNSQLSQHQ 32
Score = 26.3 bits (59), Expect = 1.3
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E ++C C KV+ +H+++H G K G
Sbjct: 2 SSGSSGTGEK--RYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG 46
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.084
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIH--EKVYG 143
Y+CNEC V + +HL H+ IH EK G
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSG 42
Score = 27.9 bits (63), Expect = 0.40
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P++C C KV+ RH+ +H G K G
Sbjct: 2 SSGSSGTGEK--PYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG 46
Score = 27.5 bits (62), Expect = 0.61
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH 206
P++C C K+FT S + H+ H E P
Sbjct: 12 PYKCNECGKVFTQNSHLARHRGIHTGEK--PSGPSS 45
Score = 27.1 bits (61), Expect = 0.83
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ EK Y C+ CG+ F QN+ + H+
Sbjct: 2 SSGSSGTGEKPYK--CNECGKVFTQNSHLARHR 32
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.084
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIH--EKVYG 143
Y+CNEC V + +HL H++IH K G
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKPSG 42
Score = 26.7 bits (60), Expect = 0.99
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P++C C KV+ H+++H GVK G
Sbjct: 2 SSGSSGTGEK--PYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG 46
Score = 26.3 bits (59), Expect = 1.4
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ EK Y C+ CG+ F QN+ + H+
Sbjct: 2 SSGSSGTGEKPYK--CNECGKVFTQNSHLANHQ 32
Score = 25.2 bits (56), Expect = 4.2
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE 205
P++C C K+FT S + +H++ H P
Sbjct: 12 PYKCNECGKVFTQNSHLANHQRIHTGVK--PSGPS 44
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.084
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
YQC+EC GK L H H EK G
Sbjct: 13 YQCSEC---GKSFSGSYRLTQHWITHTREKPSG 42
Score = 28.3 bits (64), Expect = 0.27
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + + E P++C C K + +H H K G
Sbjct: 2 SSGSSGEGEK--PYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG 46
Score = 26.0 bits (58), Expect = 1.7
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC 204
P+QC C K F+ + H H E P
Sbjct: 12 PYQCSECGKSFSGSYRLTQHWITHTREK--PSGP 43
Score = 24.8 bits (55), Expect = 5.4
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ EK Y C CG+ F + +T H
Sbjct: 2 SSGSSGEGEKPYQ--CSECGKSFSGSYRLTQHW 32
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 29.8 bits (67), Expect = 0.085
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPE 197
PF+C C ++FT ++ + H++ H +
Sbjct: 12 PFKCSKCDRVFTQRNYLVQHERTHARK 38
Score = 27.9 bits (62), Expect = 0.36
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIH 138
++C++C+ V + +L H++ H
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTH 35
Score = 26.4 bits (58), Expect = 1.6
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVKHECEG 233
S + E+ P++C C +V+ + +H++ H G
Sbjct: 2 SSGSSGAGEN--PFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG 44
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 29.5 bits (67), Expect = 0.087
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 6/26 (23%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH 138
Y CNEC GK R+ HL H+KIH
Sbjct: 13 YNCNEC---GKAFTRIFHLTRHQKIH 35
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.089
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y+CNEC GK + +HL H+ IH EK G
Sbjct: 13 YKCNEC---GKVFTQNSHLVRHRGIHTGEKPSG 42
Score = 27.4 bits (62), Expect = 0.48
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P++C C KV+ RH+ +H G K G
Sbjct: 2 SSGSSGTGEK--PYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSSG 46
Score = 27.1 bits (61), Expect = 0.70
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH 206
P++C C K+FT S + H+ H E P
Sbjct: 12 PYKCNECGKVFTQNSHLVRHRGIHTGEK--PSGPSS 45
Score = 27.1 bits (61), Expect = 0.80
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ EK Y C+ CG+ F QN+ + H+
Sbjct: 2 SSGSSGTGEKPYK--CNECGKVFTQNSHLVRHR 32
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.089
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y CN C GK HL H ++H E + G
Sbjct: 13 YSCNVC---GKAFVLSAHLNQHLRVHTQETLSG 42
Score = 27.9 bits (63), Expect = 0.43
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH 206
P+ C +C K F + + H + H E
Sbjct: 12 PYSCNVCGKAFVLSAHLNQHLRVHTQET--LSGPSS 45
Score = 27.5 bits (62), Expect = 0.57
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P+ C C K + +H +VH G
Sbjct: 2 SSGSSGTGEK--PYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSSG 46
Score = 27.1 bits (61), Expect = 0.77
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 134 HKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
EK Y C+VCG+ F + + H
Sbjct: 3 SGSSGTGEKPYS--CNVCGKAFVLSAHLNQHL 32
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.090
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
++C EC GK + HL +H +IH EK G
Sbjct: 13 FKCKEC---GKAFRQNIHLASHLRIHTGEKPSG 42
Score = 27.1 bits (61), Expect = 0.84
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P++C+ C K + H ++H G K G
Sbjct: 2 SSGSSGSGEK--PFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG 46
Score = 26.3 bits (59), Expect = 1.7
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ EK + C CG+ F QN + H
Sbjct: 2 SSGSSGSGEKPFK--CKECGKAFRQNIHLASHL 32
Score = 25.2 bits (56), Expect = 3.3
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE 205
PF+C+ C K F + SH + H E P
Sbjct: 12 PFKCKECGKAFRQNIHLASHLRIHTGEK--PSGPS 44
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.091
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIH--EKVYG 143
Y+CNEC V + +HL H+++H K G
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKPSG 42
Score = 28.3 bits (64), Expect = 0.31
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P++C C KV+ RH++VH G K G
Sbjct: 2 SSGSSGTGEK--PYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG 46
Score = 27.5 bits (62), Expect = 0.48
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH 206
P++C C K+FT S + H++ H P
Sbjct: 12 PYKCNECGKVFTQNSHLARHRRVHTGGK--PSGPSS 45
Score = 27.1 bits (61), Expect = 0.84
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ EK Y C+ CG+ F QN+ + H+
Sbjct: 2 SSGSSGTGEKPYK--CNECGKVFTQNSHLARHR 32
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.094
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + P+ C C K + S H+ +H G K G
Sbjct: 2 SSGSSGTGVK--PYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG 46
Score = 29.0 bits (66), Expect = 0.15
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y CNEC GK + L TH+ IH EK G
Sbjct: 13 YMCNEC---GKAFSVYSSLTTHQVIHTGEKPSG 42
Score = 28.6 bits (65), Expect = 0.23
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH 206
P+ C C K F+ S++ +H+ H E P
Sbjct: 12 PYMCNECGKAFSVYSSLTTHQVIHTGEK--PSGPSS 45
Score = 27.5 bits (62), Expect = 0.57
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ K Y C+ CG+ F + +T H+
Sbjct: 2 SSGSSGTGVKPYM--CNECGKAFSVYSSLTTHQ 32
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.11
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIH--EKVYG 143
Y+CNEC V + ++L H++IH EK G
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSG 42
Score = 27.1 bits (61), Expect = 0.66
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P++C C KV+ + RH+++H G K G
Sbjct: 2 SSGSSGTGEK--PYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG 46
Score = 27.1 bits (61), Expect = 0.84
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH 206
P++C C K+F + S + H++ H E P
Sbjct: 12 PYKCNECGKVFRHNSYLSRHQRIHTGEK--PSGPSS 45
Score = 25.6 bits (57), Expect = 2.4
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ EK Y C+ CG+ F N+ ++ H+
Sbjct: 2 SSGSSGTGEKPYK--CNECGKVFRHNSYLSRHQ 32
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.11
Identities = 33/213 (15%), Positives = 57/213 (26%), Gaps = 99/213 (46%)
Query: 27 SSGLNL---LNNES--------ASSQVQYEEDKDYDDGEDKPLL-LT-----CVECNEDF 69
+ GLN+ L N S S + PL+ + V
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSIPISC------------PLIGVIQLAHYVVTAKLLG 257
Query: 70 INVNDFVSHLRGHDSTSHVCDICLEAFPS-SDDRD---------LHFLSHLTSDGLYQCN 119
+ S+L+G +T H + + +D + + L + G+ +C
Sbjct: 258 FTPGELRSYLKG--ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI---GV-RCY 311
Query: 120 EC-------------------------------------EFVGKRLTHLKTHKKIHEKVY 142
E ++V K +HL K++ +
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV 371
Query: 143 -G----VYCDVCG-----RGFHQNNEVTLHKIK 165
G V V G G + L K K
Sbjct: 372 NGAKNLV---VSGPPQSLYGLNLT----LRKAK 397
Score = 31.9 bits (72), Expect = 0.21
Identities = 38/265 (14%), Positives = 67/265 (25%), Gaps = 111/265 (41%)
Query: 13 DTVKLMIRFKGILGSSGLNLLNNESASSQVQY-EEDKD-YDDGEDKPLLLTCVECNEDFI 70
+L+ F G G N + Y EE +D Y L+ D I
Sbjct: 152 GNAQLVAIF----GGQG----NTDD------YFEELRDLYQTY--HVLV-------GDLI 188
Query: 71 NV--NDFVSHLRGHDST----SHVCDIC--LE---AFPSSDDRDLHFLSHLT-S---DGL 115
+R + +I LE P D +L + S G+
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD-----YLLSIPISCPLIGV 243
Query: 116 YQ----CNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRG---------------FHQN 156
Q + +G T ++ + G +G F +
Sbjct: 244 IQLAHYVVTAKLLGF------TPGELRSYLKGAT--GHSQGLVTAVAIAETDSWESFFVS 295
Query: 157 NEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRS 216
+ F + I C ++ YP +
Sbjct: 296 VRKAIT-----VLF-----------------F-----------IGVRC---YEAYP--NT 317
Query: 217 YKRHKQVHLGVKHECEGGPIPALAL 241
+ +++ EG P P L++
Sbjct: 318 SLPPSILEDSLENN-EGVPSPMLSI 341
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 29.4 bits (67), Expect = 0.11
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E W+C C + S + H+ VH+G K G
Sbjct: 2 SSGSSGMGEK--TWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG 46
Score = 28.7 bits (65), Expect = 0.19
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIH--EKVYG 143
++C EC+ + + L+ H+ +H EK G
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKPSG 42
Score = 27.9 bits (63), Expect = 0.44
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC 204
++C C F+ S++ H+ H E P
Sbjct: 12 TWKCRECDMCFSQASSLRLHQNVHVGEK--PSGP 43
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.5 bits (67), Expect = 0.11
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P++C C K + + S +H+++H G + G
Sbjct: 2 SSGSSGTGEK--PYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG 46
Score = 27.9 bits (63), Expect = 0.34
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y+C EC GK + H+++H ++ G
Sbjct: 13 YKCMEC---GKAFGDNSSCTQHQRLHTGQRPSG 42
Score = 27.5 bits (62), Expect = 0.56
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH 206
P++C C K F + S+ H++ H + P
Sbjct: 12 PYKCMECGKAFGDNSSCTQHQRLHTGQR--PSGPSS 45
Score = 26.4 bits (59), Expect = 1.3
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ EK Y C CG+ F N+ T H+
Sbjct: 2 SSGSSGTGEKPYK--CMECGKAFGDNSSCTQHQ 32
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.12
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y C EC GK R L H+++H EK G
Sbjct: 13 YNCKEC---GKSFSRAPCLLKHERLHSGEKPSG 42
Score = 26.7 bits (60), Expect = 1.2
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E + C+ C K + +H+++H G K G
Sbjct: 2 SSGSSGTGEK--LYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG 46
Score = 26.3 bits (59), Expect = 1.3
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ EK+Y C CG+ F + + H+
Sbjct: 2 SSGSSGTGEKLYN--CKECGKSFSRAPCLLKHE 32
Score = 25.2 bits (56), Expect = 4.2
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC 204
+ C+ C K F+ + H++ H E P
Sbjct: 12 LYNCKECGKSFSRAPCLLKHERLHSGEK--PSGP 43
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.12
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y+C +C GK R +L H+++H EK G
Sbjct: 13 YKCEDC---GKGYNRRLNLDMHQRVHMGEKTSG 42
Score = 28.2 bits (64), Expect = 0.26
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ EK Y C+ CG+G+++ + +H+
Sbjct: 2 SSGSSGSVEKPYK--CEDCGKGYNRRLNLDMHQ 32
Score = 27.5 bits (62), Expect = 0.48
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P++CE C K Y + + H++VH+G K G
Sbjct: 2 SSGSSGSVEK--PYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG 46
Score = 26.7 bits (60), Expect = 1.1
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC 204
P++CE C K + + + H++ H E
Sbjct: 12 PYKCEDCGKGYNRRLNLDMHQRVHMGEK--TSGP 43
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.12
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y+C EC GK + +L H++IH EK G
Sbjct: 13 YRCGEC---GKAFAQKANLTQHQRIHTGEKPSG 42
Score = 25.9 bits (58), Expect = 1.8
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH 206
P++C C K F K+ + H++ H E P
Sbjct: 12 PYRCGECGKAFAQKANLTQHQRIHTGEK--PSGPSS 45
Score = 25.5 bits (57), Expect = 2.7
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ EK Y C CG+ F Q +T H+
Sbjct: 2 SSGSSGTGEKPYR--CGECGKAFAQKANLTQHQ 32
Score = 25.2 bits (56), Expect = 4.0
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P+ C C K + K + +H+++H G K G
Sbjct: 2 SSGSSGTGEK--PYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSSG 46
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.1 bits (66), Expect = 0.13
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
+QC EC GK + +HL +H+++H EK G
Sbjct: 13 FQCEEC---GKRFTQNSHLHSHQRVHTGEKPSG 42
Score = 27.1 bits (61), Expect = 0.81
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC 204
PFQCE C K FT S + SH++ H E P
Sbjct: 12 PFQCEECGKRFTQNSHLHSHQRVHTGEK--PSGP 43
Score = 26.4 bits (59), Expect = 1.2
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P++CE C K + H++VH G K G
Sbjct: 2 SSGSSGSGEK--PFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSSG 46
Score = 26.4 bits (59), Expect = 1.5
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLH 162
+ EK + C+ CG+ F QN+ + H
Sbjct: 2 SSGSSGSGEKPFQ--CEECGKRFTQNSHLHSH 31
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 29.5 bits (66), Expect = 0.13
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHC 207
CEIC KIF + + HK +H E P+
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEK--PYSSGPS 46
Score = 27.2 bits (60), Expect = 0.85
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 86 SHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNEC 121
C+IC + F + H LSH + + Y
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSH-SGEKPYSSGPS 46
Score = 26.8 bits (59), Expect = 1.0
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 201 PWECEHCHKVYPNKRSYKRHKQVHLGVK 228
CE C K++ + RHK H G K
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEK 39
Score = 26.4 bits (58), Expect = 1.6
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIH--EKVY 142
C C + + + HL HK H EK Y
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKPY 41
Score = 25.3 bits (55), Expect = 3.5
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 146 CDVCGRGFHQNNEVTLHKIKEHNAFPFQCEIC 177
C++CG+ F + HK+ P+
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.13
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH 206
P++C IC K FT KS + H++ H E P
Sbjct: 12 PYECSICGKSFTKKSQLHVHQQIHTGEK--PSGPSS 45
Score = 27.1 bits (61), Expect = 0.77
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y+C+ C GK + + L H++IH EK G
Sbjct: 13 YECSIC---GKSFTKKSQLHVHQQIHTGEKPSG 42
Score = 25.2 bits (56), Expect = 3.2
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLH 162
+ EK Y C +CG+ F + +++ +H
Sbjct: 2 SSGSSGTGEKPYE--CSICGKSFTKKSQLHVH 31
Score = 24.8 bits (55), Expect = 4.4
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P+EC C K + K H+Q+H G K G
Sbjct: 2 SSGSSGTGEK--PYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG 46
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 29.1 bits (66), Expect = 0.14
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 8/32 (25%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVY 142
Y+C EC GK + L H++IH
Sbjct: 11 YECQEC---GKSFRQKGSLTLHERIHTGSGPS 39
Score = 24.8 bits (55), Expect = 4.4
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAH---KP 196
++C+ C K F K ++ H++ H P
Sbjct: 10 VYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 23.7 bits (52), Expect = 9.7
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 201 PWECEHCHKVYPNKRSYKRHKQVHLGVK 228
+EC+ C K + K S H+++H G
Sbjct: 10 VYECQECGKSFRQKGSLTLHERIHTGSG 37
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.14
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y+C EC GK R L H+++H EK+ G
Sbjct: 13 YKCVEC---GKGYKRRLDLDFHQRVHTGEKLSG 42
Score = 27.1 bits (61), Expect = 0.85
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P++C C K Y + H++VH G K G
Sbjct: 2 SSGSSGSGEK--PYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG 46
Score = 26.3 bits (59), Expect = 1.5
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLH 162
+ EK Y C CG+G+ + ++ H
Sbjct: 2 SSGSSGSGEKPYK--CVECGKGYKRRLDLDFH 31
Score = 24.8 bits (55), Expect = 4.7
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC 204
P++C C K + + + H++ H E
Sbjct: 12 PYKCVECGKGYKRRLDLDFHQRVHTGEK--LSGP 43
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 29.0 bits (66), Expect = 0.16
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIH--EKVYG 143
Y+C++CE L H+++H EK G
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPSG 42
Score = 26.7 bits (60), Expect = 0.89
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + + P++C C K + K H+++H K G
Sbjct: 2 SSGSSGAGVN--PYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG 46
Score = 26.7 bits (60), Expect = 1.1
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC 204
P++C C K F+ K + H++ H E P
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREK--PSGP 43
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.16
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGKRLT---HLKTHKKIH--EKVYG 143
++C EC GKR T L +H+++H EK G
Sbjct: 13 FKCEEC---GKRFTQNSQLHSHQRVHTGEKPSG 42
Score = 27.9 bits (63), Expect = 0.43
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC 204
PF+CE C K FT S + SH++ H E P
Sbjct: 12 PFKCEECGKRFTQNSQLHSHQRVHTGEK--PSGP 43
Score = 27.1 bits (61), Expect = 0.86
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ EK + C+ CG+ F QN+++ H+
Sbjct: 2 SSGSSGSGEKPFK--CEECGKRFTQNSQLHSHQ 32
Score = 26.7 bits (60), Expect = 1.0
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P++CE C K + H++VH G K G
Sbjct: 2 SSGSSGSGEK--PFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG 46
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 29.0 bits (66), Expect = 0.16
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
++C++C GK + ++ H++IH EK G
Sbjct: 13 HRCSDC---GKFFLQASNFIQHRRIHTGEKPSG 42
Score = 27.5 bits (62), Expect = 0.61
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLH 162
+ E+ + C CG+ F Q + H
Sbjct: 2 SSGSSGHGERGHR--CSDCGKFFLQASNFIQH 31
Score = 26.7 bits (60), Expect = 1.2
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK 228
S + E C C K + ++ +H+++H G K
Sbjct: 2 SSGSSGHGER--GHRCSDCGKFFLQASNFIQHRRIHTGEK 39
Score = 25.6 bits (57), Expect = 2.3
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAH---KP 196
+C C K F S H++ H KP
Sbjct: 12 GHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.16
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
+ C +C GK L H++IH EK G
Sbjct: 13 FDCIDC---GKAFSDHIGLNQHRRIHTGEKPSG 42
Score = 27.9 bits (63), Expect = 0.34
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH 206
PF C C K F++ + H++ H E P
Sbjct: 12 PFDCIDCGKAFSDHIGLNQHRRIHTGEK--PSGPSS 45
Score = 27.9 bits (63), Expect = 0.35
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P++C C K + + +H+++H G K G
Sbjct: 2 SSGSSGTGEK--PFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG 46
Score = 26.3 bits (59), Expect = 1.4
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ EK + C CG+ F + + H+
Sbjct: 2 SSGSSGTGEKPFD--CIDCGKAFSDHIGLNQHR 32
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.16
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIH--EKVYG 143
++C EC + HL H+++H EK G
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPSG 42
Score = 25.9 bits (58), Expect = 2.0
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH 206
PF+C C K + + + H++ H E P
Sbjct: 12 PFKCGECGKSYNQRVHLTQHQRVHTGEK--PSGPSS 45
Score = 25.6 bits (57), Expect = 3.0
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLH 162
+ EK + C CG+ ++Q +T H
Sbjct: 2 SSGSSGTGEKPFK--CGECGKSYNQRVHLTQH 31
Score = 25.2 bits (56), Expect = 3.8
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P++C C K Y + +H++VH G K G
Sbjct: 2 SSGSSGTGEK--PFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG 46
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.18
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y C+ C GK L H++IH EK G
Sbjct: 13 YVCDYC---GKAFGLSAELVRHQRIHTGEKPSG 42
Score = 27.9 bits (63), Expect = 0.43
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P+ C++C K + RH+++H G K G
Sbjct: 2 SSGSSGSGEK--PYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG 46
Score = 26.3 bits (59), Expect = 1.3
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH 206
P+ C+ C K F + + H++ H E P
Sbjct: 12 PYVCDYCGKAFGLSAELVRHQRIHTGEK--PSGPSS 45
Score = 26.3 bits (59), Expect = 1.5
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ EK Y CD CG+ F + E+ H+
Sbjct: 2 SSGSSGSGEKPYV--CDYCGKAFGLSAELVRHQ 32
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.19
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH 206
F+C C K FT KST+ H+K H E P
Sbjct: 12 HFECTECGKAFTRKSTLSMHQKIHTGEK--PSGPSS 45
Score = 28.3 bits (64), Expect = 0.27
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
++C EC GK R + L H+KIH EK G
Sbjct: 13 FECTEC---GKAFTRKSTLSMHQKIHTGEKPSG 42
Score = 25.9 bits (58), Expect = 2.1
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + +EC C K + K + H+++H G K G
Sbjct: 2 SSGSSGTGGK--HFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG 46
Score = 25.2 bits (56), Expect = 3.4
Identities = 6/32 (18%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLH 162
+ K + C CG+ F + + +++H
Sbjct: 2 SSGSSGTGGKHFE--CTECGKAFTRKSTLSMH 31
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.19
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y+CNEC GK + + L H++IH EK G
Sbjct: 13 YKCNEC---GKAFSQTSKLARHQRIHTGEKPSG 42
Score = 27.5 bits (62), Expect = 0.61
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P++C C K + RH+++H G K G
Sbjct: 2 SSGSSGTGEK--PYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG 46
Score = 27.1 bits (61), Expect = 0.64
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH 206
P++C C K F+ S + H++ H E P
Sbjct: 12 PYKCNECGKAFSQTSKLARHQRIHTGEK--PSGPSS 45
Score = 25.9 bits (58), Expect = 1.9
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ EK Y C+ CG+ F Q +++ H+
Sbjct: 2 SSGSSGTGEKPYK--CNECGKAFSQTSKLARHQ 32
>3ov0_A Cytochrome C family protein; multiheme cytochrome C, electron
transfer, Fe reduction, GEO sulfurreducens; HET: HEM;
3.20A {Geobacter sulfurreducens}
Length = 318
Score = 31.6 bits (69), Expect = 0.20
Identities = 28/176 (15%), Positives = 49/176 (27%), Gaps = 21/176 (11%)
Query: 61 TCVECNEDFINVNDFVSHLRGHDSTSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNE 120
+C C+ D + + + H + + + +D SH G+Y+CNE
Sbjct: 137 SCGACHNDKMAFTVAGNCGKCHKGMTPPKTVNFKMKGVAD----AAFSHEFHLGMYKCNE 192
Query: 121 CEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKI 180
C + + G C C H K+ + C CH
Sbjct: 193 CHTKLFAYKAGAKRFTMADMDKGKSCGAC------------HNGKDAFSSASDCGKCHPG 240
Query: 181 FTNKSTMWSHKKAHKPEDQIPW----ECEHCH-KVYPNKRSYKRHKQVHLGVKHEC 231
+ D +C CH KV+ ++ + C
Sbjct: 241 LKPAKLTYKTSVGEAYFDHDIHLSMFKCADCHTKVFKYRKGSAPATMADMEKGKSC 296
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.20
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIH--EKVYG 143
++CNEC+ + + L H++IH EK G
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKPSG 42
Score = 27.9 bits (63), Expect = 0.45
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + + ++C C K + S H+++H G K G
Sbjct: 2 SSGSSGAGKK--LFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSSG 46
Score = 27.5 bits (62), Expect = 0.57
Identities = 7/32 (21%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLH 162
+ +K++ C+ C + F Q++ +T+H
Sbjct: 2 SSGSSGAGKKLFK--CNECKKTFTQSSSLTVH 31
Score = 27.1 bits (61), Expect = 0.77
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC 204
F+C C K FT S++ H++ H E P
Sbjct: 12 LFKCNECKKTFTQSSSLTVHQRIHTGEK--PSGP 43
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.20
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y+C C GK +HL H +H E+ G
Sbjct: 13 YKCQVC---GKAFRVSSHLVQHHSVHSGERPSG 42
Score = 26.3 bits (59), Expect = 1.5
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P++C+ C K + +H VH G + G
Sbjct: 2 SSGSSGTGEK--PYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSSG 46
Score = 26.3 bits (59), Expect = 1.5
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 134 HKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
EK Y C VCG+ F ++ + H
Sbjct: 3 SGSSGTGEKPYK--CQVCGKAFRVSSHLVQHH 32
Score = 25.2 bits (56), Expect = 3.4
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC 204
P++C++C K F S + H H E P
Sbjct: 12 PYKCQVCGKAFRVSSHLVQHHSVHSGER--PSGP 43
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 28.6 bits (65), Expect = 0.21
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y+C EC GK + THL H+++H EK G
Sbjct: 13 YECKEC---GKAFSQTTHLIQHQRVHTGEKPSG 42
Score = 26.3 bits (59), Expect = 1.7
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P+EC+ C K + +H++VH G K G
Sbjct: 2 SSGSSGTGEK--PYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG 46
Score = 25.9 bits (58), Expect = 2.2
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH 206
P++C+ C K F+ + + H++ H E P
Sbjct: 12 PYECKECGKAFSQTTHLIQHQRVHTGEK--PSGPSS 45
Score = 24.4 bits (54), Expect = 6.5
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLH 162
+ EK Y C CG+ F Q + H
Sbjct: 2 SSGSSGTGEKPYE--CKECGKAFSQTTHLIQH 31
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.21
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
++CNEC GK + HL H++IH EK G
Sbjct: 13 HKCNEC---GKSFIQSAHLIQHQRIHTGEKPSG 42
Score = 25.9 bits (58), Expect = 1.9
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P +C C K + +H+++H G K G
Sbjct: 2 SSGSSGTGER--PHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG 46
Score = 25.5 bits (57), Expect = 2.5
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLH 162
+ E+ + C+ CG+ F Q+ + H
Sbjct: 2 SSGSSGTGERPHK--CNECGKSFIQSAHLIQH 31
Score = 25.5 bits (57), Expect = 2.5
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH 206
P +C C K F + + H++ H E P
Sbjct: 12 PHKCNECGKSFIQSAHLIQHQRIHTGEK--PSGPSS 45
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 28.2 bits (62), Expect = 0.22
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 201 PWECEHCHKVYPNKRSYKRHKQVHLGVK 228
P+ C HC + + + + +RH ++H G K
Sbjct: 3 PYVCIHCQRQFADPGALQRHVRIHTGEK 30
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 28.6 bits (65), Expect = 0.23
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
++C EC GK R + L H K+H EK G
Sbjct: 13 FKCVEC---GKGFSRRSALNVHHKLHTGEKPSG 42
Score = 27.9 bits (63), Expect = 0.34
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH 206
PF+C C K F+ +S + H K H E P
Sbjct: 12 PFKCVECGKGFSRRSALNVHHKLHTGEK--PSGPSS 45
Score = 25.2 bits (56), Expect = 3.1
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLH 162
+ EK + C CG+GF + + + +H
Sbjct: 2 SSGSSGTGEKPFK--CVECGKGFSRRSALNVH 31
Score = 25.2 bits (56), Expect = 3.4
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P++C C K + + + H ++H G K G
Sbjct: 2 SSGSSGTGEK--PFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG 46
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.23
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGKRLT---HLKTHKKIH--EKVYG 143
Y+C EC GK T +L TH+KIH EK G
Sbjct: 13 YRCAEC---GKAFTDRSNLFTHQKIHTGEKPSG 42
Score = 28.2 bits (64), Expect = 0.31
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH 206
P++C C K FT++S +++H+K H E P
Sbjct: 12 PYRCAECGKAFTDRSNLFTHQKIHTGEK--PSGPSS 45
Score = 27.1 bits (61), Expect = 0.84
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P+ C C K + ++ + H+++H G K G
Sbjct: 2 SSGSSGTGEK--PYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG 46
Score = 25.2 bits (56), Expect = 3.8
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLH 162
+ EK Y C CG+ F + + H
Sbjct: 2 SSGSSGTGEKPYR--CAECGKAFTDRSNLFTH 31
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.7 bits (65), Expect = 0.24
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P++C C K + K + H++ H G + G
Sbjct: 2 SSGSSGTGEK--PYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG 46
Score = 27.1 bits (61), Expect = 0.65
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGKRLT---HLKTHKKIH--EKVYG 143
Y+C++C GK T L+ H+K H E+ G
Sbjct: 13 YKCSDC---GKSFTWKSRLRIHQKCHTGERHSG 42
Score = 26.7 bits (60), Expect = 0.99
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC 204
P++C C K FT KS + H+K H E
Sbjct: 12 PYKCSDCGKSFTWKSRLRIHQKCHTGER--HSGP 43
Score = 25.6 bits (57), Expect = 2.7
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLH 162
+ EK Y C CG+ F + + +H
Sbjct: 2 SSGSSGTGEKPYK--CSDCGKSFTWKSRLRIH 31
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.8 bits (69), Expect = 0.25
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 10/56 (17%)
Query: 38 ASSQVQYEEDKDYDDGEDKPLLLTCVECNEDFIN-VNDFVSHLRGHDSTSHVCDIC 92
+ + + G + ++LTC EC V VC +C
Sbjct: 2 MTRESIDKRAGRR--GPNLNIVLTCPECKVYPPKIVER-------FSEGDVVCALC 48
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 28.3 bits (64), Expect = 0.25
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK 228
S + E C+ C K + + + H++VH+G K
Sbjct: 2 SSGSSGSGEK--SHTCDECGKNFCYISALRIHQRVHMGEK 39
Score = 28.3 bits (64), Expect = 0.32
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGKRLTH---LKTHKKIH--EKVYG 143
+ C+EC GK + L+ H+++H EK G
Sbjct: 13 HTCDEC---GKNFCYISALRIHQRVHMGEKCSG 42
Score = 26.4 bits (59), Expect = 1.2
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 134 HKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
EK + CD CG+ F + + +H+
Sbjct: 3 SGSSGSGEKSHT--CDECGKNFCYISALRIHQ 32
Score = 24.9 bits (55), Expect = 5.4
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAH 194
C+ C K F S + H++ H
Sbjct: 12 SHTCDECGKNFCYISALRIHQRVH 35
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.27
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
+C EC GK + L H++ H +K G
Sbjct: 13 CKCTEC---GKAFCWKSQLIMHQRTHVDDKHSG 42
Score = 27.9 bits (63), Expect = 0.36
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P +C C K + K H++ H+ K G
Sbjct: 2 SSGSSGTGEK--PCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG 46
Score = 26.4 bits (59), Expect = 1.3
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC 204
P +C C K F KS + H++ H +
Sbjct: 12 PCKCTECGKAFCWKSQLIMHQRTHVDDK--HSGP 43
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.27
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH 206
++C C K F KST+ H++ H+ E P
Sbjct: 12 HYECSECGKAFIQKSTLSMHQRIHRGEK--PSGPSS 45
Score = 27.5 bits (62), Expect = 0.57
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y+C+EC GK + + L H++IH EK G
Sbjct: 13 YECSEC---GKAFIQKSTLSMHQRIHRGEKPSG 42
Score = 25.9 bits (58), Expect = 1.7
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E +EC C K + K + H+++H G K G
Sbjct: 2 SSGSSGTGER--HYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSSG 46
Score = 25.9 bits (58), Expect = 2.2
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLH 162
+ E+ Y C CG+ F Q + +++H
Sbjct: 2 SSGSSGTGERHYE--CSECGKAFIQKSTLSMH 31
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.27
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
YQCNEC GK + + L H+++H EK G
Sbjct: 13 YQCNEC---GKAFSQTSKLARHQRVHTGEKPSG 42
Score = 27.9 bits (63), Expect = 0.41
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + P++C C K + RH++VH G K G
Sbjct: 2 SSGSSGTGGK--PYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSSG 46
Score = 26.7 bits (60), Expect = 0.90
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH 206
P+QC C K F+ S + H++ H E P
Sbjct: 12 PYQCNECGKAFSQTSKLARHQRVHTGEK--PSGPSS 45
Score = 26.0 bits (58), Expect = 1.7
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ K Y C+ CG+ F Q +++ H+
Sbjct: 2 SSGSSGTGGKPYQ--CNECGKAFSQTSKLARHQ 32
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.28
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ EK Y CDVC + F + +T+H+
Sbjct: 2 SSGSSGTGEKPYK--CDVCHKSFRYGSSLTVHQ 32
Score = 27.9 bits (63), Expect = 0.34
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIH--EKVYG 143
Y+C+ C + + L H++IH EK G
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKPSG 42
Score = 27.5 bits (62), Expect = 0.55
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P++C+ CHK + S H+++H G K G
Sbjct: 2 SSGSSGTGEK--PYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG 46
Score = 26.7 bits (60), Expect = 1.2
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC 204
P++C++CHK F S++ H++ H E P
Sbjct: 12 PYKCDVCHKSFRYGSSLTVHQRIHTGEK--PSGP 43
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.29
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y+C C K + HL H+K H EK G
Sbjct: 13 YECKVC---SKAFTQKAHLAQHQKTHTGEKPSG 42
Score = 26.7 bits (60), Expect = 0.90
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P+EC+ C K + K +H++ H G K G
Sbjct: 2 SSGSSGTGEK--PYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSSG 46
Score = 26.0 bits (58), Expect = 1.8
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE 205
P++C++C K FT K+ + H+K H E P
Sbjct: 12 PYECKVCSKAFTQKAHLAQHQKTHTGEK--PSGPS 44
Score = 25.2 bits (56), Expect = 3.6
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLH 162
+ EK Y C VC + F Q + H
Sbjct: 2 SSGSSGTGEKPYE--CKVCSKAFTQKAHLAQH 31
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.31
Identities = 8/36 (22%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH 206
P++C +C K F+++ ++ H++ H + P
Sbjct: 12 PYECSVCGKAFSHRQSLSVHQRIHSGKK--PSGPSS 45
Score = 26.7 bits (60), Expect = 1.2
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y+C+ C GK L H++IH +K G
Sbjct: 13 YECSVC---GKAFSHRQSLSVHQRIHSGKKPSG 42
Score = 26.3 bits (59), Expect = 1.4
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P+EC C K + +++S H+++H G K G
Sbjct: 2 SSGSSGTGEK--PYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG 46
Score = 24.8 bits (55), Expect = 5.1
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 134 HKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
EK Y C VCG+ F +++H+
Sbjct: 3 SGSSGTGEKPYE--CSVCGKAFSHRQSLSVHQ 32
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.33
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y+C++C GK R + L H++ H E+ G
Sbjct: 13 YKCSDC---GKAFTRKSGLHIHQQSHTGERHSG 42
Score = 27.9 bits (63), Expect = 0.40
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P++C C K + K H+Q H G + G
Sbjct: 2 SSGSSGTGEK--PYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSSG 46
Score = 27.5 bits (62), Expect = 0.62
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC 204
P++C C K FT KS + H+++H E
Sbjct: 12 PYKCSDCGKAFTRKSGLHIHQQSHTGER--HSGP 43
Score = 24.8 bits (55), Expect = 4.8
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLH 162
+ EK Y C CG+ F + + + +H
Sbjct: 2 SSGSSGTGEKPYK--CSDCGKAFTRKSGLHIH 31
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.33
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y+C+EC GK R L +H++ H EK G
Sbjct: 13 YECHEC---GKAFSRKYQLISHQRTHAGEKPSG 42
Score = 27.1 bits (61), Expect = 0.73
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH 206
P++C C K F+ K + SH++ H E P
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAGEK--PSGPSS 45
Score = 24.8 bits (55), Expect = 5.0
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLH 162
+ E Y C CG+ F + ++ H
Sbjct: 2 SSGSSGTGENPYE--CHECGKAFSRKYQLISH 31
Score = 24.4 bits (54), Expect = 6.9
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E+ P+EC C K + K H++ H G K G
Sbjct: 2 SSGSSGTGEN--PYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG 46
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.34
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P+EC+ C K + + S +H++VH G K G
Sbjct: 2 SSGSSGTGEK--PYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSSG 46
Score = 27.5 bits (62), Expect = 0.59
Identities = 9/36 (25%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH 206
P++C++C K F++ +++ H++ H E P
Sbjct: 12 PYECDVCRKAFSHHASLTQHQRVHSGEK--PSGPSS 45
Score = 27.5 bits (62), Expect = 0.62
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y+C+ C K L H+++H EK G
Sbjct: 13 YECDVC---RKAFSHHASLTQHQRVHSGEKPSG 42
Score = 25.9 bits (58), Expect = 1.8
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ EK Y CDVC + F + +T H+
Sbjct: 2 SSGSSGTGEKPYE--CDVCRKAFSHHASLTQHQ 32
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 28.3 bits (62), Expect = 0.34
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAH 194
P+ C +C F K M H ++H
Sbjct: 10 PYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 24.5 bits (52), Expect = 6.7
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 198 DQIPWECEHCHKVYPNKRSYKRHKQVHLGVKHE 230
+ P+ C C + K H + H G +
Sbjct: 7 GEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 39
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 27.9 bits (63), Expect = 0.34
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE 205
PF+CE C K F S +SH+++H E P
Sbjct: 12 PFKCEECGKGFYTNSQCYSHQRSHSGEK--PSGPS 44
Score = 27.9 bits (63), Expect = 0.44
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 8/36 (22%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYGVYC 146
++C EC GK + +H++ H EK G
Sbjct: 13 FKCEEC---GKGFYTNSQCYSHQRSHSGEKPSGPSS 45
Score = 26.7 bits (60), Expect = 0.95
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLH 162
+ EK + C+ CG+GF+ N++ H
Sbjct: 2 SSGSSGSGEKPFK--CEECGKGFYTNSQCYSH 31
Score = 26.4 bits (59), Expect = 1.5
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P++CE C K + H++ H G K G
Sbjct: 2 SSGSSGSGEK--PFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG 46
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.35
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y+CN+C GK + L TH+ IH +K G
Sbjct: 13 YECNQC---GKAFSVRSSLTTHQAIHTGKKPSG 42
Score = 27.9 bits (63), Expect = 0.42
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P+EC C K + + S H+ +H G K G
Sbjct: 2 SSGSSGTGEK--PYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSSG 46
Score = 27.9 bits (63), Expect = 0.44
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH 206
P++C C K F+ +S++ +H+ H + P
Sbjct: 12 PYECNQCGKAFSVRSSLTTHQAIHTGKK--PSGPSS 45
Score = 24.8 bits (55), Expect = 5.4
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ EK Y C+ CG+ F + +T H+
Sbjct: 2 SSGSSGTGEKPYE--CNQCGKAFSVRSSLTTHQ 32
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 27.9 bits (63), Expect = 0.37
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
++C EC GK + L TH++IH EK G
Sbjct: 13 FECAEC---GKSFSISSQLATHQRIHTGEKPSG 42
Score = 27.9 bits (63), Expect = 0.43
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH 206
PF+C C K F+ S + +H++ H E P
Sbjct: 12 PFECAECGKSFSISSQLATHQRIHTGEK--PSGPSS 45
Score = 26.7 bits (60), Expect = 1.0
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P+EC C K + H+++H G K G
Sbjct: 2 SSGSSGTGEK--PFECAECGKSFSISSQLATHQRIHTGEKPSGPSSG 46
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.8 bits (63), Expect = 0.37
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH 206
++C C K F KST+ H++ H E P
Sbjct: 12 HYECSECGKAFARKSTLIMHQRIHTGEK--PSGPSS 45
Score = 27.5 bits (62), Expect = 0.50
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y+C+EC GK R + L H++IH EK G
Sbjct: 13 YECSEC---GKAFARKSTLIMHQRIHTGEKPSG 42
Score = 25.2 bits (56), Expect = 3.8
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E +EC C K + K + H+++H G K G
Sbjct: 2 SSGSSGTGER--HYECSECGKAFARKSTLIMHQRIHTGEKPSGPSSG 46
Score = 24.4 bits (54), Expect = 6.7
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLH 162
+ E+ Y C CG+ F + + + +H
Sbjct: 2 SSGSSGTGERHYE--CSECGKAFARKSTLIMH 31
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.38
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y CNEC GK + + L H++ H EK G
Sbjct: 13 YGCNEC---GKTFSQKSILSAHQRTHTGEKPSG 42
Score = 27.1 bits (61), Expect = 0.75
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ EK YG C+ CG+ F Q + ++ H+
Sbjct: 2 SSGSSGSGEKPYG--CNECGKTFSQKSILSAHQ 32
Score = 26.3 bits (59), Expect = 1.4
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE 205
P+ C C K F+ KS + +H++ H E P
Sbjct: 12 PYGCNECGKTFSQKSILSAHQRTHTGEK--PSGPS 44
Score = 26.0 bits (58), Expect = 2.2
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P+ C C K + K H++ H G K G
Sbjct: 2 SSGSSGSGEK--PYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG 46
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.39
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH 206
P++C C K F KS + H++ H E+ P
Sbjct: 12 PYECSDCGKSFIKKSQLHVHQRIHTGEN--PSGPSS 45
Score = 27.1 bits (61), Expect = 0.80
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y+C++C GK + + L H++IH E G
Sbjct: 13 YECSDC---GKSFIKKSQLHVHQRIHTGENPSG 42
Score = 26.3 bits (59), Expect = 1.2
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P+EC C K + K H+++H G G
Sbjct: 2 SSGSSGTGEK--PYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSSG 46
Score = 24.4 bits (54), Expect = 6.8
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLH 162
+ EK Y C CG+ F + +++ +H
Sbjct: 2 SSGSSGTGEKPYE--CSDCGKSFIKKSQLHVH 31
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 27.5 bits (62), Expect = 0.43
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 8/32 (25%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVY 142
Y+C+EC GK R L +H++ H E
Sbjct: 11 YECSEC---GKAFNRKDQLISHQRTHAGESGP 39
Score = 26.3 bits (59), Expect = 1.2
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC 204
P++C C K F K + SH++ H E
Sbjct: 10 PYECSECGKAFNRKDQLISHQRTHAGES--GPSS 41
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 27.8 bits (63), Expect = 0.43
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 8/32 (25%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVY 142
Y CNEC GK ++L H + H E
Sbjct: 13 YVCNEC---GKAFRSKSYLIIHTRTHTGESGP 41
Score = 25.5 bits (57), Expect = 2.5
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ K Y C+ CG+ F + + +H
Sbjct: 2 SSGSSGTGMKPYV--CNECGKAFRSKSYLIIHT 32
Score = 25.5 bits (57), Expect = 2.6
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC 204
P+ C C K F +KS + H + H E
Sbjct: 12 PYVCNECGKAFRSKSYLIIHTRTHTGES--GPSS 43
Score = 24.0 bits (53), Expect = 9.3
Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 3/44 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HEC 231
S + P+ C C K + +K H + H G
Sbjct: 2 SSGSSGTGMK--PYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.44
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P++C C K + + S H+ H G K G
Sbjct: 2 SSGSSGTGEK--PYKCNECGKAFRARSSLAIHQATHSGEKPSGPSSG 46
Score = 27.9 bits (63), Expect = 0.45
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y+CNEC GK + L H+ H EK G
Sbjct: 13 YKCNEC---GKAFRARSSLAIHQATHSGEKPSG 42
Score = 26.3 bits (59), Expect = 1.5
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC 204
P++C C K F +S++ H+ H E P
Sbjct: 12 PYKCNECGKAFRARSSLAIHQATHSGEK--PSGP 43
Score = 25.2 bits (56), Expect = 3.6
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ EK Y C+ CG+ F + + +H+
Sbjct: 2 SSGSSGTGEKPYK--CNECGKAFRARSSLAIHQ 32
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 30.2 bits (67), Expect = 0.44
Identities = 7/50 (14%), Positives = 16/50 (32%)
Query: 145 YCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAH 194
Y + + H ++ T+H+ Q E ++ N +
Sbjct: 182 YSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
>3bxu_A Cytochrome C3; multiheme cytochromes, electron transport; HET: HEM;
1.35A {Geobacter sulfurreducens} PDB: 1os6_A* 2ldo_A*
Length = 71
Score = 28.5 bits (63), Expect = 0.44
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Query: 165 KEHNAFPFQCEICHKIFTNKSTMWSHKKA--------HKPEDQIPWECEHCHK 209
K+H C +CH K + + A H+ + P +C CHK
Sbjct: 18 KKHQTIVPDCAVCHGKTPGKIEGFGKEMAHGKSCKGCHEEMKKGPTKCGECHK 70
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.44
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y C+EC GK ++L H + H EK G
Sbjct: 13 YGCSEC---GKAFSSKSYLIIHMRTHSGEKPSG 42
Score = 26.7 bits (60), Expect = 0.97
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE 205
P+ C C K F++KS + H + H E P
Sbjct: 12 PYGCSECGKAFSSKSYLIIHMRTHSGEK--PSGPS 44
Score = 26.4 bits (59), Expect = 1.3
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ EK YG C CG+ F + + +H
Sbjct: 2 SSGSSGAGEKPYG--CSECGKAFSSKSYLIIHM 32
Score = 26.4 bits (59), Expect = 1.4
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P+ C C K + +K H + H G K G
Sbjct: 2 SSGSSGAGEK--PYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG 46
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.45
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y+C +C GK +L H+K+H E+ G
Sbjct: 13 YKCEKC---GKGYNSKFNLDMHQKVHTGERPSG 42
Score = 26.7 bits (60), Expect = 0.92
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ EK Y C+ CG+G++ + +H+
Sbjct: 2 SSGSSGTGEKPYK--CEKCGKGYNSKFNLDMHQ 32
Score = 26.7 bits (60), Expect = 1.2
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC 204
P++CE C K + +K + H+K H E P
Sbjct: 12 PYKCEKCGKGYNSKFNLDMHQKVHTGER--PSGP 43
Score = 26.3 bits (59), Expect = 1.3
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P++CE C K Y +K + H++VH G + G
Sbjct: 2 SSGSSGTGEK--PYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG 46
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.45
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y C EC GK ++L H+KIH +K G
Sbjct: 13 YICAEC---GKAFTIRSNLIKHQKIHTKQKPSG 42
Score = 27.5 bits (62), Expect = 0.47
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P+ C C K + + + +H+++H K G
Sbjct: 2 SSGSSGTGEK--PYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG 46
Score = 27.5 bits (62), Expect = 0.53
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH 206
P+ C C K FT +S + H+K H + P
Sbjct: 12 PYICAECGKAFTIRSNLIKHQKIHTKQK--PSGPSS 45
Score = 25.6 bits (57), Expect = 2.7
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLH 162
+ EK Y C CG+ F + + H
Sbjct: 2 SSGSSGTGEKPYI--CAECGKAFTIRSNLIKH 31
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 27.5 bits (62), Expect = 0.49
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HEC 231
S + E P+EC C K + K H++ H GV
Sbjct: 2 SSGSSGSGEK--PYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 26.3 bits (59), Expect = 1.2
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ EK Y C+ CG+ F + + +H+
Sbjct: 2 SSGSSGSGEKPYE--CNECGKAFIWKSLLIVHE 32
Score = 25.6 bits (57), Expect = 2.6
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y+CNEC GK + L H++ H
Sbjct: 13 YECNEC---GKAFIWKSLLIVHERTHAGVSGPS 42
Score = 25.2 bits (56), Expect = 3.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAH 194
P++C C K F KS + H++ H
Sbjct: 12 PYECNECGKAFIWKSLLIVHERTH 35
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.55
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
+ C+EC GK T+L H+KIH E+ G
Sbjct: 13 FICSEC---GKVFTHKTNLIIHQKIHTGERPSG 42
Score = 26.7 bits (60), Expect = 1.0
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC 204
PF C C K+FT+K+ + H+K H E P
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTGER--PSGP 43
Score = 25.9 bits (58), Expect = 1.7
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E+ P+ C C KV+ +K + H+++H G + G
Sbjct: 2 SSGSSGTGEN--PFICSECGKVFTHKTNLIIHQKIHTGERPSGPSSG 46
Score = 25.1 bits (56), Expect = 3.3
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 4/32 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLH 162
+ E + C CG+ F + +H
Sbjct: 2 SSGSSGTGENPFI--CSECGKVFTHKTNLIIH 31
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 27.5 bits (62), Expect = 0.56
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P+ C+ C K + +H++VH G K G
Sbjct: 2 SSGSSGTGEK--PYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG 46
Score = 26.4 bits (59), Expect = 1.3
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y C EC GK + L H+++H EK G
Sbjct: 13 YNCKEC---GKSFRWASCLLKHQRVHSGEKPSG 42
Score = 26.0 bits (58), Expect = 2.1
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE 205
P+ C+ C K F S + H++ H E P
Sbjct: 12 PYNCKECGKSFRWASCLLKHQRVHSGEK--PSGPS 44
Score = 26.0 bits (58), Expect = 2.1
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ EK Y C CG+ F + + H+
Sbjct: 2 SSGSSGTGEKPYN--CKECGKSFRWASCLLKHQ 32
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 27.5 bits (62), Expect = 0.56
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEG 233
S + + P+EC HC K + K + H+++H G K G
Sbjct: 2 SSGSSGTGQK--PFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG 45
Score = 26.7 bits (60), Expect = 0.91
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 8/32 (25%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVY 142
++C C GK +L TH++IH EK
Sbjct: 13 FECTHC---GKSFRAKGNLVTHQRIHTGEKSG 41
Score = 26.7 bits (60), Expect = 1.1
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC 204
PF+C C K F K + +H++ H E
Sbjct: 12 PFECTHCGKSFRAKGNLVTHQRIHTGEK--SGPS 43
Score = 25.6 bits (57), Expect = 2.8
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 4/32 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLH 162
+ +K + C CG+ F + H
Sbjct: 2 SSGSSGTGQKPFE--CTHCGKSFRAKGNLVTH 31
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.57
Identities = 9/36 (25%), Positives = 11/36 (30%), Gaps = 8/36 (22%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYGVYC 146
+QC EC G L H + H G
Sbjct: 13 FQCKEC---GMNFSWSCSLFKHLRSHERTDPSGPSS 45
Score = 26.8 bits (60), Expect = 0.86
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH 206
PFQC+ C F+ +++ H ++H+ D P
Sbjct: 12 PFQCKECGMNFSWSCSLFKHLRSHERTD--PSGPSS 45
Score = 26.8 bits (60), Expect = 0.93
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P++C+ C + S +H + H G
Sbjct: 2 SSGSSGTGEK--PFQCKECGMNFSWSCSLFKHLRSHERTDPSGPSSG 46
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 27.5 bits (62), Expect = 0.59
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
+ C+ C K ++L H++ H EK G
Sbjct: 11 FGCSCC---EKAFSSKSYLLVHQQTHAEEKPSG 40
Score = 27.1 bits (61), Expect = 0.60
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC 204
PF C C K F++KS + H++ H E P
Sbjct: 10 PFGCSCCEKAFSSKSYLLVHQQTHAEEK--PSGP 41
Score = 24.0 bits (53), Expect = 8.6
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 201 PWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
P+ C C K + +K H+Q H K G
Sbjct: 10 PFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG 44
>3h33_A Cytochrome C7, cytochrome C3; multiheme cytochrome, geobacter
sulfurreducen electron transport; HET: HEM; 2.25A
{Geobacter sulfurreducens}
Length = 75
Score = 28.1 bits (62), Expect = 0.64
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 8/53 (15%)
Query: 165 KEHNAFPFQCEICHKIFTNKSTMWSHKKA--------HKPEDQIPWECEHCHK 209
K+H +C CH+ + + A H+ P C CHK
Sbjct: 18 KKHQDALGECRGCHEKGPGRIDGFDKVMAHGKGCKGCHEEMKIGPVRCGDCHK 70
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 27.1 bits (61), Expect = 0.65
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 8/32 (25%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVY 142
Y+CNEC K ++L H++ H E
Sbjct: 13 YECNEC---QKAFNTKSNLMVHQRTHTGESGP 41
Score = 26.7 bits (60), Expect = 0.99
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC 204
P++C C K F KS + H++ H E
Sbjct: 12 PYECNECQKAFNTKSNLMVHQRTHTGES--GPSS 43
Score = 25.5 bits (57), Expect = 2.6
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ EK Y C+ C + F+ + + +H+
Sbjct: 2 SSGSSGTGEKPYE--CNECQKAFNTKSNLMVHQ 32
Score = 24.7 bits (55), Expect = 4.4
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HEC 231
S + E P+EC C K + K + H++ H G
Sbjct: 2 SSGSSGTGEK--PYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.65
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH 206
P+ C +C K FT++S + H+K H E P
Sbjct: 12 PYICTVCGKAFTDRSNLIKHQKIHTGEK--PSGPSS 45
Score = 27.1 bits (61), Expect = 0.80
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y C C GK ++L H+KIH EK G
Sbjct: 13 YICTVC---GKAFTDRSNLIKHQKIHTGEKPSG 42
Score = 25.5 bits (57), Expect = 2.5
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLH 162
+ E+ Y C VCG+ F + + H
Sbjct: 2 SSGSSGTGERPYI--CTVCGKAFTDRSNLIKH 31
Score = 25.5 bits (57), Expect = 3.2
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P+ C C K + ++ + +H+++H G K G
Sbjct: 2 SSGSSGTGER--PYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG 46
>1fgj_A Hydroxylamine oxidoreductase; nitrification; HET: HEM HEC; 2.80A
{Nitrosomonas europaea} SCOP: a.138.1.3
Length = 546
Score = 30.2 bits (66), Expect = 0.70
Identities = 14/87 (16%), Positives = 19/87 (21%), Gaps = 3/87 (3%)
Query: 145 YCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC 204
Y N ++ C CH K K P C
Sbjct: 116 YKKGKLEEVENNLRSMGKLGEKETLKEVGCIDCHVDVNKKDKADHTKDIRMP---TADTC 172
Query: 205 EHCHKVYPNKRSYKRHKQVHLGVKHEC 231
CH +R +R V +
Sbjct: 173 GTCHLREFAERESERDTMVWPNGQWPA 199
Score = 27.1 bits (58), Expect = 6.3
Identities = 14/108 (12%), Positives = 23/108 (21%), Gaps = 1/108 (0%)
Query: 118 CNECEFVGKRLTHLKTHKKIHEKVYGVYCD-VCGRGFHQNNEVTLHKIKEHNAFPFQCEI 176
C C + + + N E T+ C +
Sbjct: 172 CGTCHLREFAERESERDTMVWPNGQWPAGRPSHALDYTANIETTVWATMPQREVAEGCTM 231
Query: 177 CHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVH 224
CH + + E + P C CH + H
Sbjct: 232 CHTNQNKCDNCHTRHEFSAAESRKPEACATCHSGVDHNNWEAYTMSKH 279
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 27.3 bits (61), Expect = 0.80
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 5/49 (10%)
Query: 189 SHKKAHKPEDQIPWECEH--CHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P+ C C + RH++ H GVK G
Sbjct: 2 SSGSSGTGEK--PFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG 48
Score = 25.3 bits (56), Expect = 3.8
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCE 175
+ EK + CG F +++E++ H+ P
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.7 bits (58), Expect = 0.81
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 172 FQCEICHKIFTNKSTMWSHKKAHKPE 197
F CE C+K+F K ++ +H + H E
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNE 35
Score = 25.6 bits (55), Expect = 2.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 202 WECEHCHKVYPNKRSYKRHKQVHLGVK 228
+ CE+C+KV+ K S + H ++H K
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 27.1 bits (61), Expect = 0.84
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y+C EC GK + L H++ H EK G
Sbjct: 13 YECIEC---GKAFKTKSSLICHRRSHTGEKPSG 42
Score = 26.7 bits (60), Expect = 1.1
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + + P+EC C K + K S H++ H G K G
Sbjct: 2 SSGSSGTGQR--PYECIECGKAFKTKSSLICHRRSHTGEKPSGPSSG 46
Score = 26.3 bits (59), Expect = 1.3
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC 204
P++C C K F KS++ H+++H E P
Sbjct: 12 PYECIECGKAFKTKSSLICHRRSHTGEK--PSGP 43
Score = 25.2 bits (56), Expect = 3.7
Identities = 6/33 (18%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ ++ Y C CG+ F + + H+
Sbjct: 2 SSGSSGTGQRPYE--CIECGKAFKTKSSLICHR 32
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 26.7 bits (60), Expect = 0.85
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 8/32 (25%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVY 142
Y+C EC GK R L +H+K H +
Sbjct: 13 YECCEC---GKVFSRKDQLVSHQKTHSGQSGP 41
Score = 25.2 bits (56), Expect = 3.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAH 194
P++C C K+F+ K + SH+K H
Sbjct: 12 PYECCECGKVFSRKDQLVSHQKTH 35
Score = 24.8 bits (55), Expect = 5.3
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HEC 231
S + E+ P+EC C KV+ K H++ H G
Sbjct: 2 SSGSSGTGEN--PYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 26.9 bits (60), Expect = 0.86
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPE 197
P+ C C K FT + ++ H+++
Sbjct: 11 PYLCGQCGKSFTQRGSLAVHQRSCSQS 37
Score = 26.1 bits (58), Expect = 1.6
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 8/30 (26%)
Query: 116 YQCNECEFVGKRLT---HLKTHKKIH--EK 140
Y C +C GK T L H++
Sbjct: 12 YLCGQC---GKSFTQRGSLAVHQRSCSQSG 38
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 26.8 bits (60), Expect = 0.92
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEH 167
+ +K Y C CG+ F QN + H H
Sbjct: 2 SSGSSGTGKKPYE--CIECGKAFIQNTSLIRHWRYYH 36
Score = 24.1 bits (53), Expect = 9.1
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRH-KQVHLGVK-HECEGG 234
S + + P+EC C K + S RH + H G K G
Sbjct: 2 SSGSSGTGKK--PYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG 47
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 26.8 bits (60), Expect = 1.00
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 8/32 (25%)
Query: 116 YQCNECEFVGKRLT---HLKTHKKIH--EKVY 142
Y+C++C GK + L H ++H
Sbjct: 12 YRCDQC---GKAFSQKGSLIVHIRVHTGSGPS 40
Score = 26.4 bits (59), Expect = 1.1
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 134 HKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
EK Y CD CG+ F Q + +H
Sbjct: 2 SSGSSGGEKPYR--CDQCGKAFSQKGSLIVHI 31
Score = 25.6 bits (57), Expect = 2.2
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAH 194
P++C+ C K F+ K ++ H + H
Sbjct: 11 PYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 25.6 bits (57), Expect = 2.2
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK 228
+ E P+ C+ C K + K S H +VH G
Sbjct: 2 SSGSSGGEK--PYRCDQCGKAFSQKGSLIVHIRVHTGSG 38
>3oue_A Cytochrome C family protein; multiheme cytochrome-C, electron
transfer, Fe reduction, GEO sulfurreducens, cytochrome
C7 (C3) fold; HET: HEM; 2.15A {Geobacter sulfurreducens}
Length = 158
Score = 28.8 bits (63), Expect = 1.0
Identities = 23/129 (17%), Positives = 36/129 (27%), Gaps = 17/129 (13%)
Query: 108 SHLTSDGLYQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEH 167
SH G+Y+CNEC + + G C C H K+
Sbjct: 20 SHEFHLGMYKCNECHTKLFAYKAGAKRFTMADMDKGKSCGAC------------HNGKDA 67
Query: 168 NAFPFQCEICHKIFTNKSTMWSHKKAHKPED----QIPWECEHCH-KVYPNKRSYKRHKQ 222
+ C CH + D ++C CH KV+ ++
Sbjct: 68 FSSASDCGKCHPGLKPAKLTYKTSVGEAYFDHDIHLSMFKCADCHTKVFKYRKGSAPATM 127
Query: 223 VHLGVKHEC 231
+ C
Sbjct: 128 ADMEKGKSC 136
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 26.7 bits (60), Expect = 1.0
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
Y C++C K + L H++ H K G
Sbjct: 13 YGCSQC---AKTFSLKSQLIVHQRSHTGVKPSG 42
Score = 26.3 bits (59), Expect = 1.3
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLH 162
+ K YG C C + F +++ +H
Sbjct: 2 SSGSSGTGVKPYG--CSQCAKTFSLKSQLIVH 31
Score = 26.0 bits (58), Expect = 2.2
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWEC 204
P+ C C K F+ KS + H+++H P
Sbjct: 12 PYGCSQCAKTFSLKSQLIVHQRSHTGVK--PSGP 43
Score = 25.6 bits (57), Expect = 2.9
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + P+ C C K + K H++ H GVK G
Sbjct: 2 SSGSSGTGVK--PYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG 46
>3h34_A Cytochrome C7, cytochrome C3; multiheme cytochrome, geobacter
sulfurreducen electron transport; HET: HEM; 1.60A
{Geobacter sulfurreducens}
Length = 70
Score = 27.3 bits (60), Expect = 1.0
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 7/52 (13%)
Query: 165 KEHNAFPFQCEICHKIFTNKSTMWSHKKA-------HKPEDQIPWECEHCHK 209
K H+ F +C CH+ K + A H+ P +C+ CH
Sbjct: 18 KRHSEFVRECRSCHEKTPGKIRNFGKDYAHKTCKGCHEVRGAGPTKCKLCHT 69
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 26.7 bits (59), Expect = 1.1
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 195 KPEDQIPWECEH--CHKVYPNKRSYKRHKQVHLG 226
K +EC C K + + + + H Q HL
Sbjct: 12 KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLE 45
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 26.5 bits (59), Expect = 1.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIHEKV 141
+QC +C+ R HL H+K H V
Sbjct: 12 FQCPDCDRSFSRSDHLALHRKRHMLV 37
Score = 25.8 bits (57), Expect = 2.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAH 194
PFQC C + F+ + H+K H
Sbjct: 11 PFQCPDCDRSFSRSDHLALHRKRH 34
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 26.3 bits (57), Expect = 1.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPE 197
P QC +C K FT S++ +H + H E
Sbjct: 2 PCQCVMCGKAFTQASSLIAHVRQHTGE 28
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 26.5 bits (59), Expect = 1.1
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPE 197
P+ C C + F++ + + H+K H +
Sbjct: 10 PYSCAECKETFSDNNRLVQHQKMHTVK 36
Score = 26.1 bits (58), Expect = 1.6
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIH 138
Y C EC+ L H+K+H
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMH 33
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 1.2
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
++C+EC K ++L H++ H EK G
Sbjct: 13 FECSEC---QKAFNTKSNLIVHQRTHTGEKPSG 42
Score = 26.3 bits (59), Expect = 1.6
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE 205
PF+C C K F KS + H++ H E P
Sbjct: 12 PFECSECQKAFNTKSNLIVHQRTHTGEK--PSGPS 44
Score = 25.9 bits (58), Expect = 2.0
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLH 162
+ EK + C C + F+ + + +H
Sbjct: 2 SSGSSGTGEKPFE--CSECQKAFNTKSNLIVH 31
Score = 24.8 bits (55), Expect = 4.4
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P+EC C K + K + H++ H G K G
Sbjct: 2 SSGSSGTGEK--PFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSSG 46
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 1.3
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 8/33 (24%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH--EKVYG 143
++C EC GK + L H++IH E G
Sbjct: 13 HECREC---GKSFSFNSQLIVHQRIHTGENPSG 42
Score = 26.0 bits (58), Expect = 1.7
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEH 206
P +C C K F+ S + H++ H E+ P
Sbjct: 12 PHECRECGKSFSFNSQLIVHQRIHTGEN--PSGPSS 45
Score = 25.6 bits (57), Expect = 2.4
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 189 SHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLGVK-HECEGG 234
S + E P EC C K + H+++H G G
Sbjct: 2 SSGSSGTGEK--PHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG 46
Score = 24.8 bits (55), Expect = 5.3
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 133 THKKIH--EKVYGVYCDVCGRGFHQNNEVTLH 162
+ EK + C CG+ F N+++ +H
Sbjct: 2 SSGSSGTGEKPHE--CRECGKSFSFNSQLIVH 31
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 26.3 bits (58), Expect = 1.5
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 172 FQCEICHKIFTNKSTMWSHKKAHKPE 197
+ C C + F + + H H+ +
Sbjct: 7 YTCSFCKREFRSAQALGGHMNVHRRD 32
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 26.6 bits (59), Expect = 1.8
Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 129 THLKTHKKIHEKVYGVYCDV--CGRGFHQNNEVTLHKIKEHNAFPFQC--EICHKIFTNK 184
+ + ++ C CG+ + +++ + H PF C + C + F
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARS 62
Query: 185 STMWSHKKAH 194
+ H++ H
Sbjct: 63 DELSRHRRTH 72
Score = 25.8 bits (57), Expect = 3.6
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 116 YQCN--ECEFVGKRLTHLKTHKKIH--EKVYGVYCDVCGRGFHQNNEVTLHK 163
+ C+ C + +HLK H + H EK + C R F +++E++ H+
Sbjct: 18 HICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHR 69
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 27.4 bits (60), Expect = 2.0
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 114 GLYQCNECEFVGKRLTHLKTH-KKIHEKVY---GVYCDVCGRGFHQNNEVTLHKIKEH 167
G Y+C C F L H H V C C + + ++ H +K H
Sbjct: 17 GGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYH 74
Score = 26.7 bits (58), Expect = 3.2
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 12/70 (17%)
Query: 73 NDFVSHLRGH-DSTSHVCDICLEAFPSSDDRDLHFLSHLTS-------DGLYQCNECEFV 124
+ + + + C C F + D F H+ S + Y C EC F+
Sbjct: 4 HHHHHNQQNKKVEGGYECKYC--TFQTPDLNM--FTFHVDSEHPNVVLNSSYVCVECNFL 59
Query: 125 GKRLTHLKTH 134
KR L H
Sbjct: 60 TKRYDALSEH 69
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 27.1 bits (59), Expect = 2.0
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 114 GLYQCNECEFVG-KRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPF 172
G C C+ VG K + LK H + ++ C CG+ + H + HN+ P
Sbjct: 33 GSVSCPTCQAVGRKTIEGLKKHMENCKQ-EMFTCHHCGKQLRSLAGMKYHVMANHNSLPS 91
Query: 173 QCE 175
Sbjct: 92 GPS 94
Score = 25.6 bits (55), Expect = 7.4
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 3/64 (4%)
Query: 172 FQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRH-KQVHLGVKHE 230
C C + + T+ KK + Q + C HC K + K H H +
Sbjct: 35 VSCPTCQAVG--RKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSG 92
Query: 231 CEGG 234
G
Sbjct: 93 PSSG 96
>1z1n_X Sixteen heme cytochrome; electron transport; HET: NAG NAA HEC;
2.10A {Desulfovibrio gigas}
Length = 560
Score = 28.6 bits (61), Expect = 2.1
Identities = 17/137 (12%), Positives = 30/137 (21%)
Query: 80 RGHDSTSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNECEFVGKRLTHLKTHKKIHE 139
+S +C C A + + L + +
Sbjct: 242 AQTESGPVLCVGCHTAEAQAAWKKTAETPRLFRGQPDATLLVAGAATANGTVDVNWAAAG 301
Query: 140 KVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQ 199
+ GF N H + + CH +K + +
Sbjct: 302 PGPVAFDHKAHEGFVGNCVTCHHPTQTGGSLAACGVACHTTTGSKDGNFVTTAQSAHQLG 361
Query: 200 IPWECEHCHKVYPNKRS 216
+ C CH N R
Sbjct: 362 VTTSCVGCHTTQANARK 378
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 25.5 bits (55), Expect = 2.2
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAH 194
PF C IC FT K+ H K H
Sbjct: 7 PFVCRICLSAFTTKANCARHLKVH 30
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 25.4 bits (56), Expect = 2.2
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIH 138
+ C C R HLK H + H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSH 25
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin C,
SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 28.5 bits (64), Expect = 2.3
Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 25/90 (27%)
Query: 86 SHVCD---------ICLEAFPSSDDRDLHFLSHLTSDGLYQCNECEFVGKRLTHLKTHKK 136
SH+ I D + ++ EF L ++ K
Sbjct: 43 SHIARRLKHEGHYVIAS------DWKKNEHMTEDMFC-------DEFHLVDLRVMENCLK 89
Query: 137 IHEKVYGVY---CDVCGRGFHQNNEVTLHK 163
+ E V V+ D+ G GF Q+N +
Sbjct: 90 VTEGVDHVFNLAADMGGMGFIQSNHSVIMY 119
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 26.8 bits (58), Expect = 3.6
Identities = 11/111 (9%), Positives = 24/111 (21%), Gaps = 24/111 (21%)
Query: 85 TSHVCDICLEAFPSSDDRDLHFLSHLTSDGLYQCNECEFVGKRLTHLKTHKKIHEKVYGV 144
+ C +C S + H+ S + H + +
Sbjct: 31 SDTQCKVCSAVLISESQKLAHYQS-----------------------RKHANKVRRYMAI 67
Query: 145 YCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHK 195
+ + C +C+ F++ SH
Sbjct: 68 NQGEDSVPAKKFKAAPAEISDGEDRSKC-CPVCNMTFSSPVVAESHYIGKT 117
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 25.2 bits (54), Expect = 3.7
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 199 QIPWECEHCHKVYPNKRSYKRHKQVHLGVKHECEGGP 235
+ EC+ C K++ + H+ +H G E GP
Sbjct: 10 KTTSECQECGKIFRHSSLLIEHQALHAG-----ESGP 41
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi
DSS-3, thioredoxin-like, oxidoreductase, structural
genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Length = 175
Score = 27.3 bits (61), Expect = 3.9
Identities = 4/28 (14%), Positives = 8/28 (28%), Gaps = 1/28 (3%)
Query: 203 ECEHCHKVYPN-KRSYKRHKQVHLGVKH 229
C +C + + V L +
Sbjct: 33 NCPYCRRAMAEVQGLVDADPNVRLVYRE 60
>2yt5_A Metal-response element-binding transcription factor 2;
zinc-regulated factor 1, ZIRF1, metal-response element
DNA-binding protein M96; NMR {Mus musculus}
Length = 66
Score = 25.2 bits (55), Expect = 5.3
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 144 VYCDVCGRGFHQ 155
V CD CG+G+HQ
Sbjct: 24 VICDKCGQGYHQ 35
>3h4n_A Cytochrome C7, cytochrome C3; multiheme cytochrome, geobacter
sulfurreducen electron transport; HET: HEM; 1.35A
{Geobacter sulfurreducens}
Length = 72
Score = 25.4 bits (55), Expect = 5.5
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
Query: 165 KEHNAFPFQCEICHKI-----FTNKSTMWSHK---KAHKPEDQIPWECEHCHK 209
K+H +C+ CH+ W+HK HK + P +C CHK
Sbjct: 19 KKHAGVKGECKACHETEAGGKIAGMGKDWAHKTCTGCHKEMGKGPTKCGECHK 71
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 24.8 bits (53), Expect = 5.6
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 201 PWECEHCHKVYPNKRSYKRHKQVHLGVKHE 230
+C C +++ S H+ +H+G K+
Sbjct: 12 SHQCRECGEIFFQYVSLIEHQVLHMGQKNS 41
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.5 bits (52), Expect = 5.9
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIHEK 140
++C+ CE+ + ++LK H H
Sbjct: 10 FKCSLCEYATRSKSNLKAHMNRHST 34
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 24.3 bits (52), Expect = 5.9
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 172 FQCEICHKIFTNKSTMWSHKKAHK 195
++C +C + F KS + H++ HK
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHK 25
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger,
histone-binding, NUC protein; HET: M3L; 1.78A {Homo
sapiens}
Length = 75
Score = 25.3 bits (55), Expect = 6.3
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 144 VYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHK 195
+ CD C FH + V + + + + + C C K KST+ + HK
Sbjct: 26 IECDACKDWFH-GSCVGVEEEEAPDIDIYHCPNCEKT-HGKSTLKKKRTWHK 75
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 25.7 bits (55), Expect = 6.3
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 172 FQCEICHKIFTNKST--MWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRH 220
C C + T K+ + H + + + Q +C+HC K + +K H
Sbjct: 25 AVCPTC-NVVTRKTLVGLKKHMEVCQ-KLQDALKCQHCRKQFKSKAGLNYH 73
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: g.50.1.2
Length = 88
Score = 25.4 bits (55), Expect = 6.9
Identities = 5/12 (41%), Positives = 6/12 (50%)
Query: 144 VYCDVCGRGFHQ 155
V C C +HQ
Sbjct: 34 VECQECHNLYHQ 45
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.0 bits (51), Expect = 8.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 174 CEICHKIFTNKSTMWSHKKAHKPE 197
C++C K F +K T+ SHK H +
Sbjct: 12 CDMCGKKFKSKGTLKSHKLLHTAD 35
>1ofw_A 9HCC, nine-heme cytochrome C; electron transport, multiheme
cytochrome C, electron transfer, electron transpor; HET:
HEC GOL; 1.5A {Desulfovibrio desulfuricans} SCOP:
a.138.1.1 PDB: 1ofy_A* 19hc_A* 1duw_A*
Length = 296
Score = 26.4 bits (56), Expect = 10.0
Identities = 15/83 (18%), Positives = 21/83 (25%), Gaps = 19/83 (22%)
Query: 134 HKKIHEKVYGVYCDVCGRGFHQNNEVTLH--KIKEHNAFPFQCEICHKIFTNKSTMWSHK 191
H + + C C H + + A+ QC CH
Sbjct: 229 HHRSPLSLTPPKCGSC----HTKEIDKANPGRPNLMAAYHLQCMGCH------------- 271
Query: 192 KAHKPEDQIPWECEHCHKVYPNK 214
K +C CHK P
Sbjct: 272 KGMDVARPRDTDCTTCHKAAPKS 294
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.438
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,657,955
Number of extensions: 207296
Number of successful extensions: 1770
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1352
Number of HSP's successfully gapped: 672
Length of query: 243
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 152
Effective length of database: 4,160,982
Effective search space: 632469264
Effective search space used: 632469264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.0 bits)