RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16829
(243 letters)
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 36.6 bits (84), Expect = 2e-04
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVH 224
+ C+ C K FT+KS H H P+ C C K + K H ++H
Sbjct: 3 LYPCQ-CGKSFTHKSQRDRHMSMHLG--LRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 36.2 bits (83), Expect = 2e-04
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 149 CGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAH 194
CG+ F ++ H P+ C +C K F K + H K H
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 31.2 bits (70), Expect = 0.012
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHK 163
Y C +C + H +H + C VCG+ F + + H
Sbjct: 4 YPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 50
Score = 26.6 bits (58), Expect = 0.58
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 92 CLEAFPSSDDRDLHFLSHLTSDGLYQCNECEFVGKRLTHLKTHKKIH 138
C ++F RD H +S Y C C K HL H KIH
Sbjct: 8 CGKSFTHKSQRDRH-MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 30.0 bits (68), Expect = 0.018
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIH 138
+ C EC R HL H K H
Sbjct: 3 FACPECPKRFMRSDHLSKHIKTH 25
Score = 28.8 bits (65), Expect = 0.050
Identities = 8/24 (33%), Positives = 9/24 (37%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAH 194
F C C K F + H K H
Sbjct: 2 KFACPECPKRFMRSDHLSKHIKTH 25
Score = 27.7 bits (62), Expect = 0.13
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 201 PWECEHCHKVYPNKRSYKRHKQVHLGVK 228
+ C C K + +H + H K
Sbjct: 2 KFACPECPKRFMRSDHLSKHIKTHQNKK 29
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 29.5 bits (67), Expect = 0.030
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAH 194
PFQC IC + F+ + +H + H
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTH 26
Score = 29.1 bits (66), Expect = 0.032
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIH 138
+QC C R HL TH + H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTH 26
Score = 26.4 bits (59), Expect = 0.29
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 201 PWECEHCHKVYPNKRSYKRHKQVHLG 226
P++C C + + H + H G
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTG 28
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 29.1 bits (66), Expect = 0.034
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAH 194
P+ C C K F+ S + H++ H
Sbjct: 7 PYGCVECGKAFSRSSILVQHQRVH 30
Score = 29.1 bits (66), Expect = 0.044
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIH 138
Y C EC R + L H+++H
Sbjct: 8 YGCVECGKAFSRSSILVQHQRVH 30
Score = 26.4 bits (59), Expect = 0.31
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 201 PWECEHCHKVYPNKRSYKRHKQVHLG 226
P+ C C K + +H++VH G
Sbjct: 7 PYGCVECGKAFSRSSILVQHQRVHTG 32
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 29.2 bits (66), Expect = 0.036
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPED 198
P++C ICH FT TM H E+
Sbjct: 8 PYECYICHARFTQSGTMKMHILQKHTEN 35
Score = 24.9 bits (55), Expect = 1.2
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 201 PWECEHCHKVYPNKRSYKRHKQVH 224
P+EC CH + + K H
Sbjct: 8 PYECYICHARFTQSGTMKMHILQK 31
Score = 24.2 bits (53), Expect = 2.2
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 136 KIH--EKVYGVYCDVCGRGFHQNNEVTLHKIKEH 167
+ H EK Y C +C F Q+ + +H +++H
Sbjct: 1 RTHSGEKPYE--CYICHARFTQSGTMKMHILQKH 32
Score = 24.2 bits (53), Expect = 2.4
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIH 138
Y+C C + +K H
Sbjct: 9 YECYICHARFTQSGTMKMHILQK 31
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 29.1 bits (66), Expect = 0.038
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAH 194
F CE+C + F + + H ++H
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSH 25
Score = 28.7 bits (65), Expect = 0.045
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIH 138
+ C C R HLK H + H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSH 25
Score = 27.2 bits (61), Expect = 0.16
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 201 PWECEHCHKVYPNKRSYKRHKQVHLGVK 228
+ CE C + + + KRH + H K
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 29.3 bits (66), Expect = 0.040
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPED 198
P+ C C K F K + H K + +
Sbjct: 8 PYACSHCDKTFRQKQLLDMHFKRYHDPN 35
Score = 28.9 bits (65), Expect = 0.051
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIH 138
Y C+ C+ ++ L H K +
Sbjct: 9 YACSHCDKTFRQKQLLDMHFKRY 31
Score = 25.8 bits (57), Expect = 0.65
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 201 PWECEHCHKVYPNKRSYKRHKQVH 224
P+ C HC K + K+ H + +
Sbjct: 8 PYACSHCDKTFRQKQLLDMHFKRY 31
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 28.4 bits (64), Expect = 0.071
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 201 PWECEHCHKVYPNKRSYKRHKQ-VHLGVK-HECE 232
P+ C+ C K + H + VH + H+C+
Sbjct: 5 PYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38
Score = 27.7 bits (62), Expect = 0.15
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 171 PFQCEICHKIFTNKSTMWSH-KKAHKPEDQIPWECE 205
P+ C+ C K F+ + H K+ H E P +C+
Sbjct: 5 PYICQSCGKGFSRPDHLNGHIKQVHTSER--PHKCQ 38
Score = 26.5 bits (59), Expect = 0.40
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
Query: 116 YQCNECEFVGKRLTHLKTH-KKIH--EKVYGVYCDV 148
Y C C R HL H K++H E+ + C V
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHK--CQV 39
Score = 25.7 bits (57), Expect = 0.76
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 146 CDVCGRGFHQNNEVTLHKIKEHNAF-PFQCEI 176
C CG+GF + + + H + H + P +C++
Sbjct: 8 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 28.9 bits (65), Expect = 0.088
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 45 EEDKDYDDGEDKPLL--LTCVECNEDFINVNDFVSHLRG 81
+ + ++D D P C+ C FI+ + +H R
Sbjct: 1 DPNAEFD--PDLPGGGLHRCLACARYFIDSTNLKTHFRS 37
Score = 24.3 bits (53), Expect = 4.2
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 172 FQCEICHKIFTNKSTMWSHK--KAHK 195
+C C + F + + + +H K HK
Sbjct: 16 HRCLACARYFIDSTNLKTHFRSKDHK 41
Score = 23.9 bits (52), Expect = 5.9
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 202 WECEHCHKVYPNKRSYKRHKQ 222
C C + + + + K H +
Sbjct: 16 HRCLACARYFIDSTNLKTHFR 36
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 27.4 bits (61), Expect = 0.16
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 201 PWECEHCHKVYPNKRSYKRHKQVHLGV 227
P++C C + + H++ H+ V
Sbjct: 11 PFQCPDCDRSFSRSDHLALHRKRHMLV 37
Score = 27.0 bits (60), Expect = 0.22
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAH 194
PFQC C + F+ + H+K H
Sbjct: 11 PFQCPDCDRSFSRSDHLALHRKRH 34
Score = 27.0 bits (60), Expect = 0.24
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIHEKV 141
+QC +C+ R HL H+K H V
Sbjct: 12 FQCPDCDRSFSRSDHLALHRKRHMLV 37
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 27.2 bits (61), Expect = 0.16
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAH 194
P++C C K F+ S + +H++ H
Sbjct: 2 PYKCLECGKAFSQNSGLINHQRIH 25
Score = 27.2 bits (61), Expect = 0.19
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIH 138
Y+C EC + + L H++IH
Sbjct: 3 YKCLECGKAFSQNSGLINHQRIH 25
Score = 23.7 bits (52), Expect = 2.6
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 201 PWECEHCHKVYPNKRSYKRHKQVH 224
P++C C K + H+++H
Sbjct: 2 PYKCLECGKAFSQNSGLINHQRIH 25
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 27.4 bits (61), Expect = 0.18
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 172 FQCEICHKIFTNKSTMWSHKKAHKPE 197
+ C C + F + + H H+ +
Sbjct: 6 YTCSFCKREFRSAQALGGHMNVHRRD 31
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 27.4 bits (61), Expect = 0.18
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIH 138
Y+C+EC + L H++ H
Sbjct: 13 YKCDECGKSFSHSSDLSKHRRTH 35
Score = 25.5 bits (56), Expect = 0.88
Identities = 6/37 (16%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 190 HKKAHKPEDQIPWECEHCHKVYPNKRSYKRHKQVHLG 226
+ + ++C+ C K + + +H++ H G
Sbjct: 3 SEWQQRERR--RYKCDECGKSFSHSSDLSKHRRTHTG 37
Score = 24.7 bits (54), Expect = 1.5
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAHKPE 197
++C+ C K F++ S + H++ H E
Sbjct: 12 RYKCDECGKSFSHSSDLSKHRRTHTGE 38
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 26.2 bits (57), Expect = 0.44
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAH 194
P+ C +C F K M H ++H
Sbjct: 3 PYSCPVCGLRFKRKDRMSYHVRSH 26
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 25.5 bits (56), Expect = 0.80
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 169 AFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECE 205
+F C K F K + H K H + CE
Sbjct: 1 SFSCPEPACGKSFNFKKHLKEHMKLHSDTR--DYICE 35
Score = 24.3 bits (53), Expect = 2.5
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 116 YQCNE--CEFVGKRLTHLKTHKKIH--EKVY 142
+ C E C HLK H K+H + Y
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDY 32
Score = 23.5 bits (51), Expect = 4.8
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 203 ECEHCHKVYPNKRSYKRHKQVHLGVK-HECE 232
C K + K+ K H ++H + + CE
Sbjct: 5 PEPACGKSFNFKKHLKEHMKLHSDTRDYICE 35
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 25.4 bits (56), Expect = 0.89
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 116 YQCNE--CEFVGKRLTHLKTHKKIHEK 140
Y C+ C+ R L HKK H++
Sbjct: 4 YSCDHPGCDKAFVRNHDLIRHKKSHQE 30
Score = 23.4 bits (51), Expect = 4.6
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 171 PFQC--EICHKIFTNKSTMWSHKKAHKPE 197
P+ C C K F + HKK+H+ +
Sbjct: 3 PYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 24.6 bits (54), Expect = 1.3
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 116 YQCNE--CEFVGKRLTHLKTHKKIH 138
Y C C+ R L H +IH
Sbjct: 3 YACPVESCDRRFSRSADLTRHIRIH 27
Score = 23.0 bits (50), Expect = 5.8
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 171 PFQC--EICHKIFTNKSTMWSHKKAH 194
P+ C E C + F+ + + H + H
Sbjct: 2 PYACPVESCDRRFSRSADLTRHIRIH 27
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 25.1 bits (55), Expect = 1.3
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 116 YQCNECEFVGKRLTHLKTHKKIH 138
+ C C + H K+H
Sbjct: 8 FVCRICLSAFTTKANCARHLKVH 30
Score = 24.7 bits (54), Expect = 1.4
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 201 PWECEHCHKVYPNKRSYKRHKQVH 224
P+ C C + K + RH +VH
Sbjct: 7 PFVCRICLSAFTTKANCARHLKVH 30
Score = 24.7 bits (54), Expect = 1.7
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAH 194
PF C IC FT K+ H K H
Sbjct: 7 PFVCRICLSAFTTKANCARHLKVH 30
>d1os6a_ a.138.1.1 (A:) Cytochrome c7 (cytochrome c551.5, PpcA)
{Geobacter sulfurreducens, PpcA [TaxId: 35554]}
Length = 71
Score = 25.7 bits (56), Expect = 1.7
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Query: 165 KEHNAFPFQCEICHKIFTNKSTMWSHKKA--------HKPEDQIPWECEHCHK 209
K H C+ CH+ K + + A H+ + P +C CHK
Sbjct: 18 KAHQKAVPDCKKCHEKGPGKIEGFGKEMAHGKGCKGCHEEMKKGPTKCGECHK 70
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId:
8355]}
Length = 26
Score = 24.3 bits (52), Expect = 1.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 172 FQCEICHKIFTNKSTMWSHKKAHK 195
++C +C + F KS + H++ HK
Sbjct: 1 YKCGLCERSFVEKSALSRHQRVHK 24
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 53
Score = 24.6 bits (53), Expect = 2.3
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 164 IKEHNAFPFQCEICHKIFTNKSTMWSHKKAH 194
++E P C +C K+FT+ + + H+ H
Sbjct: 1 LREAGILP--CGLCGKVFTDANRLRQHEAQH 29
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 24.0 bits (52), Expect = 2.3
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 89 CDICLEAFPSSDDRDLHFLSHL 110
CDIC F SD+R H HL
Sbjct: 6 CDICGRKFARSDERKRHTKIHL 27
Score = 24.0 bits (52), Expect = 2.5
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 201 PWECEHCHKVYPNKRSYKRHKQVHL 225
P+ C+ C + + KRH ++HL
Sbjct: 3 PFACDICGRKFARSDERKRHTKIHL 27
Score = 24.0 bits (52), Expect = 2.5
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAH 194
PF C+IC + F H K H
Sbjct: 3 PFACDICGRKFARSDERKRHTKIH 26
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 29
Score = 23.9 bits (51), Expect = 2.5
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 199 QIPWECEH--CHKVYPNKRSYKRHKQVH 224
Q+P+EC H C K + KRH++VH
Sbjct: 1 QLPYECPHEGCDKRFSLPSRLKRHEKVH 28
>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz
{Human (Homo sapiens) [TaxId: 9606]}
Length = 33
Score = 23.9 bits (52), Expect = 2.7
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 202 WECEHCHKVYPNKRSYKRHK 221
+ CE C K ++ ++H
Sbjct: 8 YLCEFCLKYMKSRTILQQHM 27
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 30
Score = 23.8 bits (52), Expect = 2.9
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 116 YQCNECEFVGK---RLTHLKTHKKIH 138
++C E K RL +LKTH + H
Sbjct: 3 HKCTF-EGCRKSYSRLENLKTHLRSH 27
Score = 22.7 bits (49), Expect = 6.6
Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 171 PFQC--EICHKIFTNKSTMWSHKKAH 194
P +C E C K ++ + +H ++H
Sbjct: 2 PHKCTFEGCRKSYSRLENLKTHLRSH 27
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 23.8 bits (52), Expect = 3.1
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 171 PFQC--EICHKIFTNKSTMWSHKKAH 194
PF C C K FT + HK+ H
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 23.4 bits (51), Expect = 3.8
Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 116 YQCN--ECEFVGKRLTHLKTHKKIH 138
+ C C R L+ HK+ H
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 23.0 bits (50), Expect = 5.9
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 201 PWECEH--CHKVYPNKRSYKRHKQVHLGVK 228
P+ C C K + +RHK+ H G K
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 25.2 bits (54), Expect = 3.5
Identities = 10/79 (12%), Positives = 23/79 (29%), Gaps = 11/79 (13%)
Query: 143 GVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPW 202
G+ C VC + + + +C+ CH ++ + ++ W
Sbjct: 16 GLACVVCRQMTVASGNQLV-----------ECQECHNLYHQDCHKPQVTDKEVNDPRLVW 64
Query: 203 ECEHCHKVYPNKRSYKRHK 221
C C + +
Sbjct: 65 YCARCTRQMKRMAQKNQKS 83
Score = 25.2 bits (54), Expect = 3.7
Identities = 10/55 (18%), Positives = 15/55 (27%), Gaps = 5/55 (9%)
Query: 144 VYCDVCGRGFHQN--NEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKAHKP 196
V C C +HQ+ K + C C + M + P
Sbjct: 34 VECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR---QMKRMAQKNQKSGP 85
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 23.5 bits (50), Expect = 3.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 171 PFQCEICHKIFTNKSTMWSHKKAH 194
P +CE+C K F+ K + +H + H
Sbjct: 1 PHKCEVCGKCFSRKDKLKTHMRCH 24
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 25.1 bits (54), Expect = 5.0
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 4/39 (10%)
Query: 173 QCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKVY 211
CE C K K + + P W C+ C +
Sbjct: 67 VCEDCKKNVCTKCGVETSNNRPHPV----WLCKICLEQR 101
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 27
Score = 23.1 bits (49), Expect = 5.1
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 173 QCEICHKIFTNKSTMWSHKKAHKPE 197
+C CHK F +K + H + H E
Sbjct: 2 ECPTCHKKFLSKYYLKVHNRKHTGE 26
>d1rbli_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Synechococcus sp., strain pcc
6301 [TaxId: 1131]}
Length = 109
Score = 24.8 bits (54), Expect = 5.1
Identities = 7/33 (21%), Positives = 9/33 (27%), Gaps = 1/33 (3%)
Query: 182 TNKSTMWSHKKAHKPE-DQIPWECEHCHKVYPN 213
TMW Q+ E C Y +
Sbjct: 51 EFYWTMWKLPLFACAAPQQVLDEVRECRSEYGD 83
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 23.1 bits (49), Expect = 5.4
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 172 FQCEICHKIFTNKSTMWSH 190
F C C K FT ++TM H
Sbjct: 5 FVCSKCGKTFTRRNTMARH 23
>d1bxni_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Alcaligenes eutrophus [TaxId:
106590]}
Length = 129
Score = 25.2 bits (55), Expect = 5.6
Identities = 5/37 (13%), Positives = 9/37 (24%), Gaps = 1/37 (2%)
Query: 178 HKIFTNKSTMWSHKKAHKPE-DQIPWECEHCHKVYPN 213
M+ + I E + +PN
Sbjct: 41 PHPRNTYWEMFGLPMFDLRDAAGILMEINNARNTFPN 77
>d1fy7a_ d.108.1.1 (A:) Histone acetyltransferase ESA1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 273
Score = 25.5 bits (56), Expect = 5.7
Identities = 6/38 (15%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 174 CEICHKIFTNKSTMWSHKKA----HKPEDQIPWECEHC 207
+ + F +K ++K H P ++I +
Sbjct: 37 DDFTLQYFGSKKQYERYRKKCTLRHPPGNEIYRDDYVS 74
Score = 24.8 bits (54), Expect = 9.7
Identities = 3/20 (15%), Positives = 12/20 (60%)
Query: 204 CEHCHKVYPNKRSYKRHKQV 223
+ + + +K+ Y+R+++
Sbjct: 37 DDFTLQYFGSKKQYERYRKK 56
>d1rkua_ c.108.1.11 (A:) Homoserine kinase ThrH {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 206
Score = 25.2 bits (54), Expect = 6.1
Identities = 8/104 (7%), Positives = 23/104 (22%)
Query: 107 LSHLTSDGLYQCNECEFVGKRLTHLKTHKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKE 166
L L GL + E + + + + F++ ++ + ++
Sbjct: 48 LRILDEHGLKLGDIQEVIATLKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGF 107
Query: 167 HNAFPFQCEICHKIFTNKSTMWSHKKAHKPEDQIPWECEHCHKV 210
+ EI + +
Sbjct: 108 PTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSLYYRVIAA 151
>d1gk8i_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Chlamydomonas reinhardtii [TaxId:
3055]}
Length = 126
Score = 24.8 bits (54), Expect = 6.3
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 186 TMWSHKKAHKPE-DQIPWECEHCHKVYPN 213
TMW + Q+ E C K +P+
Sbjct: 74 TMWKLPMFGCRDPMQVLREIVACTKAFPD 102
>d1l1oc_ b.40.4.3 (C:) Replication protein A 70 KDa subunit (RPA70)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 25.2 bits (55), Expect = 6.7
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 16/72 (22%)
Query: 156 NNEVTLHKIKEHNAFP------FQCEICHKIFTNKSTMWS--------HKKAHKPEDQIP 201
N TL+++K N F + ++ K +KK ++ +
Sbjct: 2 TNWKTLYEVKSENLGQGDKPDYFSS-VATVVYLRKENCMYQACPTQDCNKKVIDQQNGL- 59
Query: 202 WECEHCHKVYPN 213
+ CE C +PN
Sbjct: 60 YRCEKCDTEFPN 71
>d1gyoa_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio gigas,
di-tetraheme cytochrome c3 [TaxId: 879]}
Length = 106
Score = 24.3 bits (52), Expect = 8.5
Identities = 12/76 (15%), Positives = 19/76 (25%), Gaps = 10/76 (13%)
Query: 134 HKKIHEKVYGVYCDVCGRGFHQNNEVTLHKIKEHNAFPFQCEICHKIFTNKSTMWSHKKA 193
H C C + H+ C CHK + K
Sbjct: 40 HHMFDGCGDFQKCADCHIDRDDRSYERGFYKAWHSESEISCRGCHK---------AMKAK 90
Query: 194 HKPEDQIPWECEHCHK 209
++ I + CH+
Sbjct: 91 NEQTGPI-GCLQGCHE 105
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 22.7 bits (48), Expect = 8.8
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 87 HVCDICLEAFPSSDDRDLHFLSH 109
HVC C +AF S H L H
Sbjct: 3 HVCAECGKAFVESSKLKRHQLVH 25
>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 121
Score = 24.4 bits (53), Expect = 9.4
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 166 EHNAFPFQCEICHKIFTNKSTMWSH-KKAHK 195
H C C ++F + +SH K H+
Sbjct: 10 AHGRQHTPCLFCDRLFASAEETFSHCKLEHQ 40
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.438
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 934,461
Number of extensions: 44292
Number of successful extensions: 390
Number of sequences better than 10.0: 1
Number of HSP's gapped: 381
Number of HSP's successfully gapped: 174
Length of query: 243
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 160
Effective length of database: 1,268,006
Effective search space: 202880960
Effective search space used: 202880960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.4 bits)