BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16830
(712 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 94/222 (42%), Gaps = 52/222 (23%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYKRP 244
K Y C C K+F+ L +HQ HTG+K + C C F+ K L H + H G
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT-HTG---- 74
Query: 245 QESCQSSHESKTCSVDEINKENEEGATIRKVKPHEDSKEYMALNKPFKCDDCFQCFLSKI 304
KP+KC +C + F +
Sbjct: 75 -------------------------------------------EKPYKCPECGKSFSQRA 91
Query: 305 LLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVI 364
L H++ H + + C CG FS+ +LR H +H+ +KP+ C CGK F RE+ +
Sbjct: 92 NLRAHQR-THTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLH 150
Query: 365 NHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKT 406
HQR H +K YKC C + F+ AL HQ HTG+KT
Sbjct: 151 THQRTHTGEKP---YKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 91/226 (40%), Gaps = 55/226 (24%)
Query: 150 EKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVH 209
EKP++CP C K F R +++H R H G+ K YKC C K+F+ L HQ H
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQR-THTGE-----KPYKCPECGKSFSDKKDLTRHQRTH 72
Query: 210 TGQKSHMCNLCSARFTCKGALLGHIKVLHEGYKRPQESCQSSHESKTCSVDEINKENEEG 269
TG+K + C C F+ + L H + H G
Sbjct: 73 TGEKPYKCPECGKSFSQRANLRAHQRT-HTG----------------------------- 102
Query: 270 ATIRKVKPHEDSKEYMALNKPFKCDDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIF 329
KP+ C +C + F L H++ H + + C CG F
Sbjct: 103 ------------------EKPYACPECGKSFSQLAHLRAHQR-THTGEKPYKCPECGKSF 143
Query: 330 SEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKV 375
S + L H +H+ +KP+ C CGK F R + + HQR H KK
Sbjct: 144 SREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 89/223 (39%), Gaps = 53/223 (23%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCTMCPAIFASIGGLRSHMKIVHHGLKTQ 436
K Y C C + F+ L +HQ HTG+K C C F+ L H + H G
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQR-THTG---- 74
Query: 437 QSCQSSHESKTCSVDEINKENEEGATIRKVKPHEDSKEYMALNKPFKCDDCDQRFLTKIL 496
KP+KC +C + F +
Sbjct: 75 ------------------------------------------EKPYKCPECGKSFSQRAN 92
Query: 497 LNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGH 556
L H+ H + ++C CGK+F LR H H+ +P+ CP C K F R+ ++ H
Sbjct: 93 LRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH 152
Query: 557 DRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQFVHTGQKT 599
R H G+ K YKC C K+F+ AL HQ HTG+KT
Sbjct: 153 QR-THTGE-----KPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 75/149 (50%), Gaps = 7/149 (4%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFS 539
KP+KC +C + F K L +H+ H + + C CGK+F + LR H H+ +P++
Sbjct: 48 KPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYA 107
Query: 540 CPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQFVHTGQKT 599
CP C K F + + H R H G+ K YKC C K+F+ L HQ HTG+K
Sbjct: 108 CPECGKSFSQLAHLRAHQR-THTGE-----KPYKCPECGKSFSREDNLHTHQRTHTGEKP 161
Query: 600 HLCTMCPASYATIGGLRSHIKIVHHGLKT 628
+ C C S++ L H + H G KT
Sbjct: 162 YKCPECGKSFSRRDALNVHQR-THTGKKT 189
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 85/214 (39%), Gaps = 50/214 (23%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSY 379
+ C CG FS +L H +H+ +KP+ C CGK F + + HQR H +K YK
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYK-- 79
Query: 380 KCSLCPRVFTHLAALEDHQFVHTGQKTRLCTMCPAIFASIGGLRSHMKIVHHGLKTQQSC 439
C C + F+ A L HQ HTG+K C C F+ + LR+H + H G
Sbjct: 80 -CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR-THTG------- 130
Query: 440 QSSHESKTCSVDEINKENEEGATIRKVKPHEDSKEYMALNKPFKCDDCDQRFLTKILLNK 499
KP+KC +C + F + L+
Sbjct: 131 ---------------------------------------EKPYKCPECGKSFSREDNLHT 151
Query: 500 HKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHS 533
H+ H + + C CGK+F + L H H+
Sbjct: 152 HQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHT 185
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 77/148 (52%), Gaps = 8/148 (5%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFS 154
KP+KC +C + F K L +H+ HT E C CG++F Q+ L H +H+ EKP++
Sbjct: 48 KPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYA 107
Query: 155 CPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKS 214
CP C K F + + H R H G+ K YKC C K+F+ L HQ HTG+K
Sbjct: 108 CPECGKSFSQLAHLRAHQR-THTGE-----KPYKCPECGKSFSREDNLHTHQRTHTGEKP 161
Query: 215 HMCNLCSARFTCKGALLGHIKVLHEGYK 242
+ C C F+ + AL H + H G K
Sbjct: 162 YKCPECGKSFSRRDALNVHQRT-HTGKK 188
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 89/221 (40%), Gaps = 53/221 (23%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFS 539
KP+ C +C + F L +H+ H + + C CGK+F K L RH H+ +P+
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYK 79
Query: 540 CPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQFVHTGQKT 599
CP C K F ++ ++ H R H G+ K Y C C K+F+ L L HQ HTG+K
Sbjct: 80 CPECGKSFSQRANLRAHQR-THTGE-----KPYACPECGKSFSQLAHLRAHQRTHTGEKP 133
Query: 600 HLCTMCPASYATIGGLRSHIKIVHHGLKTQQSCQSSHESKTCSVDEINKENEEGATIRKV 659
+ C C S++ L +H + H G
Sbjct: 134 YKCPECGKSFSREDNLHTHQR-THTG---------------------------------- 158
Query: 660 KPHEDSKEYMALNKPFKCDDCDQRFLTKILLNKHKLLHFDK 700
KP+KC +C + F + LN H+ H K
Sbjct: 159 ------------EKPYKCPECGKSFSRRDALNVHQRTHTGK 187
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 74/148 (50%), Gaps = 8/148 (5%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFS 154
KP+ C +C + F L +H+ HT E C CG++F K L H +H+ EKP+
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYK 79
Query: 155 CPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKS 214
CP C K F ++ + H R H G+ K Y C C K+F+ LA L HQ HTG+K
Sbjct: 80 CPECGKSFSQRANLRAHQR-THTGE-----KPYACPECGKSFSQLAHLRAHQRTHTGEKP 133
Query: 215 HMCNLCSARFTCKGALLGHIKVLHEGYK 242
+ C C F+ + L H + H G K
Sbjct: 134 YKCPECGKSFSREDNLHTHQRT-HTGEK 160
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 96/240 (40%), Gaps = 55/240 (22%)
Query: 107 FLTKILLNKHKLLHTEGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKH 166
F + + + L E C CG++F + L H +H+ EKP+ CP C K F K
Sbjct: 4 FGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKK 63
Query: 167 EVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCNLCSARFTC 226
++++H R H G+ K YKC C K+F+ A L HQ HTG+K + C C F+
Sbjct: 64 DLTRHQR-THTGE-----KPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQ 117
Query: 227 KGALLGHIKVLHEGYKRPQESCQSSHESKTCSVDEINKENEEGATIRKVKPHEDSKEYMA 286
L H + H G
Sbjct: 118 LAHLRAHQRT-HTG---------------------------------------------- 130
Query: 287 LNKPFKCDDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHSTQK 346
KP+KC +C + F + L+ H++ H + + C CG FS + L H +H+ +K
Sbjct: 131 -EKPYKCPECGKSFSREDNLHTHQR-THTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 83/203 (40%), Gaps = 53/203 (26%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVY 569
++C CGK+F L H H+ +P+ CP C K F K+D+ H R H G+K
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT-HTGEK---- 76
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHGLKTQ 629
YKC C K+F+ L HQ HTG+K + C C S++ + LR+H + H G
Sbjct: 77 -PYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR-THTG---- 130
Query: 630 QSCQSSHESKTCSVDEINKENEEGATIRKVKPHEDSKEYMALNKPFKCDDCDQRFLTKIL 689
KP+KC +C + F +
Sbjct: 131 ------------------------------------------EKPYKCPECGKSFSREDN 148
Query: 690 LNKHKLLHFDKDYFSCNYCGKTF 712
L+ H+ H + + C CGK+F
Sbjct: 149 LHTHQRTHTGEKPYKCPECGKSF 171
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 64/120 (53%), Gaps = 7/120 (5%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFS 154
KP+KC +C + F + L H+ HT E C CG++F Q L H +H+ EKP+
Sbjct: 76 KPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYK 135
Query: 155 CPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKS 214
CP C K F R+ + H R H G+K YKC C K+F+ AL HQ HTG+K+
Sbjct: 136 CPECGKSFSREDNLHTHQR-THTGEK-----PYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 54/158 (34%), Gaps = 47/158 (29%)
Query: 555 GHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCTMCPASYATIGG 614
G V Q K Y C C K+F+ L +HQ HTG+K + C C S++
Sbjct: 5 GSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKD 64
Query: 615 LRSHIKIVHHGLKTQQSCQSSHESKTCSVDEINKENEEGATIRKVKPHEDSKEYMALNKP 674
L H + H G KP
Sbjct: 65 LTRHQR-THTG----------------------------------------------EKP 77
Query: 675 FKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
+KC +C + F + L H+ H + ++C CGK+F
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSF 115
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Query: 125 LTCNLCGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVY 184
+ C +CG+ FR + L H +SHS EKP+SCP+C +FKRK +S H R H G +V
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR-SHDG---SVG 63
Query: 185 KSYKCSLCPKAFTHLAALEDH-QYVHTGQKS 214
K Y C C K F+ L H + VH+G S
Sbjct: 64 KPYICQSCGKGFSRPDHLNGHIKQVHSGPSS 94
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 319 GFTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKS 378
G C CG IF + +L H +SHS +KP+SC +CG RFKR++ + H R H V K
Sbjct: 7 GVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG-SVGKP 65
Query: 379 YKCSLCPRVFTHLAALEDH-QFVHTGQKT 406
Y C C + F+ L H + VH+G +
Sbjct: 66 YICQSCGKGFSRPDHLNGHIKQVHSGPSS 94
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 511 SCNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYK 570
+C CGK F Y L RH + HS +P+SCPVC +FKRK ++ H R H G V K
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR-SHDGS---VGK 64
Query: 571 SYKCSLCPKAFTYLGALEDH-QFVHTGQKT 599
Y C C K F+ L H + VH+G +
Sbjct: 65 PYICQSCGKGFSRPDHLNGHIKQVHSGPSS 94
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 484 CDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIH--STARPFSCP 541
C+ C + F LN+HKL H + +SC CG F K ++ H+ H S +P+ C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 542 VCKKQFKRKQDVAGHDRVVHQG 563
C K F R + GH + VH G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 100 CDDCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISH--STEKPFSCP 156
C+ C + F LN+HKL H+ E +C +CG F++K R+ H+ SH S KP+ C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 157 ICKKQFKRKHEVSKHDRIVHQG 178
C K F R ++ H + VH G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 293 CDDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISH--STQKPFSC 350
C+ C + F LN+HK H + ++C CGL F K + H+ SH S KP+ C
Sbjct: 10 CEICGKIFRDVYHLNRHKLS-HSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYIC 68
Query: 351 SLCGKRFKRENGVINH 366
CGK F R + + H
Sbjct: 69 QSCGKGFSRPDHLNGH 84
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 189 CSLCPKAFTHLAALEDHQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYKRPQESC 248
C +C K F + L H+ H+G+K + C +C RF K + H++ H+G C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS-HDGSVGKPYIC 68
Query: 249 QS 250
QS
Sbjct: 69 QS 70
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 677 CDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
C+ C + F LN+HKL H + +SC CG F
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRF 45
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 381 CSLCPRVFTHLAALEDHQFVHTGQKTRLCTMCPAIF 416
C +C ++F + L H+ H+G+K C +C F
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRF 45
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 287 LNKPFKCDDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHSTQK 346
+ KP+KC +C + F L +H++ H + + C CG FS+ L+ H +H+ +K
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEK 59
Query: 347 PFSCSLCGKRFKRENGVINHQRLHQTKK 374
P+ C CGK F R + + HQR HQ KK
Sbjct: 60 PYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 94 LNKPFKCDDCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKP 152
+ KP+KC +C + F L KH+ HT E C CG++F Q L H +H+ EKP
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 153 FSCPICKKQFKRKHEVSKHDRIVHQGKK 180
+ CP C K F R +S+H R HQ KK
Sbjct: 61 YKCPECGKSFSRSDHLSRHQR-THQNKK 87
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 478 LNKPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARP 537
+ KP+KC +C + F L KH+ H + + C CGK+F L++H H+ +P
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 538 FSCPVCKKQFKRKQDVAGHDRVVHQGKK 565
+ CP C K F R ++ H R HQ KK
Sbjct: 61 YKCPECGKSFSRSDHLSRHQR-THQNKK 87
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSY 379
+ C CG FS+ L+ H +H+ +KP+ C CGK F + + + HQR H +K Y
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP---Y 61
Query: 380 KCSLCPRVFTHLAALEDHQFVHTGQK 405
KC C + F+ L HQ H +K
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 127 CNLCGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKS 186
C CG++F Q L H +H+ EKP+ CP C K F + ++ KH R H G+ K
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR-THTGE-----KP 60
Query: 187 YKCSLCPKAFTHLAALEDHQYVHTGQK 213
YKC C K+F+ L HQ H +K
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVY 569
+ C CGK+F L++H H+ +P+ CP C K F + D+ H R H G+K
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRT-HTGEK---- 59
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
YKC C K+F+ L HQ H +K
Sbjct: 60 -PYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQ 404
+KP+ C CGK F + + + HQR H +K YK C C + F+ + L+ HQ HTG+
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYK---CPECGKSFSQSSDLQKHQRTHTGE 58
Query: 405 KTRLCTMCPAIFASIGGLRSHMKI 428
K C C F+ L H +
Sbjct: 59 KPYKCPECGKSFSRSDHLSRHQRT 82
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 150 EKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVH 209
EKP+ CP C K F + + KH R H G+K YKC C K+F+ + L+ HQ H
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQR-THTGEK-----PYKCPECGKSFSQSSDLQKHQRTH 55
Query: 210 TGQKSHMCNLCSARFTCKGALLGHIKV 236
TG+K + C C F+ L H +
Sbjct: 56 TGEKPYKCPECGKSFSRSDHLSRHQRT 82
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 536 RPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQFVHT 595
+P+ CP C K F + ++ H R H G+K YKC C K+F+ L+ HQ HT
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRT-HTGEK-----PYKCPECGKSFSQSSDLQKHQRTHT 56
Query: 596 GQKTHLCTMCPASYATIGGLRSHIKI 621
G+K + C C S++ L H +
Sbjct: 57 GEKPYKCPECGKSFSRSDHLSRHQRT 82
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 568 VYKSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHGLK 627
+ K YKC C K+F+ L+ HQ HTG+K + C C S++ L+ H + H G K
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR-THTGEK 59
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 183 VYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYK 242
+ K YKC C K+F+ + L+ HQ HTG+K + C C F+ L H + H G K
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRT-HTGEK 59
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 375 VYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCTMCPAIFASIGGLRSHMKIVHHGLK 434
+ K YKC C + F+ + L+ HQ HTG+K C C F+ L+ H + H G K
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQR-THTGEK 59
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 671 LNKPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
+ KP+KC +C + F L KH+ H + + C CGK+F
Sbjct: 1 MEKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSF 42
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
KP+KC +C + F L KH+ H + + C CGK+F
Sbjct: 31 KPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSF 70
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%)
Query: 319 GFTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKS 378
G C +C F K YL+ H H+ +KPF C CGK + R+ ++ H+ + + +
Sbjct: 7 GVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV 66
Query: 379 YKCSLCPRVFTHLAALEDHQFVHTGQKTRLCTMCPAIFASIGGLRSHMKIVHHG 432
+ CS+C F L H HTG+ C+ C F L+SHM +H G
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 96 KPFKCDDCDQCFLTKILLNKHK----LLHTEGHLTCNLCGQTFRQKFRLLNHMISHSTEK 151
KPF+C C +C+ K L +H+ + +E TC++C +TFR++ L HM+SH+ E
Sbjct: 34 KPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEM 93
Query: 152 PFSCPICKKQFKRKHEVSKHDRIVHQG 178
P+ C C +QF +K ++ H +H G
Sbjct: 94 PYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 125 LTCNLCGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVY 184
+ C C + F K+ L H H+ EKPF CP C K + RK + +H+ + V+
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEG 240
CS+C + F L H HTG+ + C+ CS +F K L H+ LH G
Sbjct: 68 T---CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 3/114 (2%)
Query: 512 CNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKS 571
C C K FL KY L+ H H+ +PF CP C K + RK+++ H+ + V
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV--- 66
Query: 572 YKCSLCPKAFTYLGALEDHQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHG 625
+ CS+C + F L H HTG+ + C+ C + L+SH+ +H G
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKL---LHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTAR 536
KPF+C C + + K L +H+ ++ + F+C+ C +TF + +LR H+V H+
Sbjct: 34 KPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEM 93
Query: 537 PFSCPVCKKQFKRKQDVAGHDRVVHQG 563
P+ C C +QF +K+D+ H +H G
Sbjct: 94 PYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
Query: 483 KCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIV---IHSTARPFS 539
+C C ++FL+K L H H + F C CGK + K L H ++ + + F+
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 540 CPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQF-VHTG 596
C VC++ F+R+ ++ H V H G+ YKCS C + F L+ H +H+G
Sbjct: 69 CSVCQETFRRRMELRLH-MVSHTGE-----MPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
Query: 289 KPFKCDDCFQCFLSKILLNQHKKQ--MHFNKGGFTCNSCGLIFSEKKYLRNHMISHSTQK 346
KPF+C C +C+ K L +H+ + M+ ++ FTC+ C F + LR HM+SH+ +
Sbjct: 34 KPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEM 93
Query: 347 PFSCSLCGKRFKRENGVINH 366
P+ CS C ++F ++ + +H
Sbjct: 94 PYKCSSCSQQFMQKKDLQSH 113
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 11/121 (9%)
Query: 99 KCDDCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMIS---HSTEKPFS 154
+C C + FL+K L H HT E C CG+ + +K LL H + +E+ F+
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 155 CPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQY-VHTGQK 213
C +C++ F+R+ E+ H + H G+ YKCS C + F L+ H +H+G
Sbjct: 69 CSVCQETFRRRMELRLH-MVSHTGE-----MPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Query: 214 S 214
S
Sbjct: 123 S 123
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 292 KCDDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMIS---HSTQKPF 348
+C C + FLSK L H ++ H + F C CG + K+ L H + +++ F
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRK-HTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 349 SCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQF-VHTG 403
+CS+C + F+R + H H + YKCS C + F L+ H +H+G
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGE---MPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVY 569
F C CGK+F L H++IHS RP+ C C K+F +K D+ H +H G+K
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTGEK---- 56
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTG 596
+KC +C KAF+ L H HTG
Sbjct: 57 -PHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%)
Query: 482 FKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFSCP 541
F C C + F L+ H L+H D + C YCGK F K +++H IH+ +P C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 542 VCKKQFKRKQDVAGHDR 558
VC K F + ++ H R
Sbjct: 62 VCGKAFSQSSNLITHSR 78
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 6/85 (7%)
Query: 127 CNLCGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKS 186
C +CG++F++ L H++ HS +P+ C C K+F +K ++ KH +H G+ K
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTGE-----KP 57
Query: 187 YKCSLCPKAFTHLAALEDHQYVHTG 211
+KC +C KAF+ + L H HTG
Sbjct: 58 HKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSY 379
F C CG F L H++ HS +P+ C CGKRF +++ + H +H + K +
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGE---KPH 58
Query: 380 KCSLCPRVFTHLAALEDHQFVHTG 403
KC +C + F+ + L H HTG
Sbjct: 59 KCQVCGKAFSQSSNLITHSRKHTG 82
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 348 FSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTR 407
F C +CGK FKR + + H +H + Y C C + F + ++ H F+HTG+K
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTR---PYPCQYCGKRFHQKSDMKKHTFIHTGEKPH 58
Query: 408 LCTMCPAIFASIGGLRSHMK 427
C +C F+ L +H +
Sbjct: 59 KCQVCGKAFSQSSNLITHSR 78
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 153 FSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQ 212
F C IC K FKR +S H I ++ + Y C C K F + ++ H ++HTG+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLI------HSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGE 55
Query: 213 KSHMCNLCSARFTCKGALLGH 233
K H C +C F+ L+ H
Sbjct: 56 KPHKCQVCGKAFSQSSNLITH 76
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 291 FKCDDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHSTQKPFSC 350
F C C + F L+ H +H + + C CG F +K ++ H H+ +KP C
Sbjct: 2 FDCKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 351 SLCGKRFKRENGVINHQRLH 370
+CGK F + + +I H R H
Sbjct: 61 QVCGKAFSQSSNLITHSRKH 80
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 98 FKCDDCDQCFLTKILLNKHKLLHTEGH-LTCNLCGQTFRQKFRLLNHMISHSTEKPFSCP 156
F C C + F L+ H L+H++ C CG+ F QK + H H+ EKP C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 157 ICKKQFKRKHEVSKHDR 173
+C K F + + H R
Sbjct: 62 VCGKAFSQSSNLITHSR 78
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 95 NKPFKCDDCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHS 148
+P+ C C + F K + KH +HT E C +CG+ F Q L+ H H+
Sbjct: 27 TRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHT 81
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 675 FKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
F C C + F L+ H L+H D + C YCGK F
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRF 39
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 479 NKPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHS 533
+P+ C C +RF K + KH +H + C CGK F L H H+
Sbjct: 27 TRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHT 81
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 672 NKPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
+P+ C C +RF K + KH +H + C CGK F
Sbjct: 27 TRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAF 67
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 186 SYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYK 242
S+ C +C K+F + L H +H+ + + C C RF K + H +H G K
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTGEK 56
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 515 CGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKC 574
CGK+F HK + RH+ +H RP+ C VC K+FK K + GH + +H G K Y+C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTG-----IKPYEC 68
Query: 575 SLCPKAFTYLGALEDH 590
++C K F + + H
Sbjct: 69 NICAKRFMWRDSFHRH 84
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 325 CGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLC 384
CG F+ K HM H +P+ C +CGK+FK ++ ++ H ++H K Y+C++C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG---IKPYECNIC 71
Query: 385 PRVFTHLAALEDH 397
+ F + H
Sbjct: 72 AKRFMWRDSFHRH 84
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 479 NKPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPF 538
+K + C C + F K ++H +H + C CGK F K+ L H+ IH+ +P+
Sbjct: 8 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPY 66
Query: 539 SCPVCKKQF 547
C +C K+F
Sbjct: 67 ECNICAKRF 75
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 130 CGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKC 189
CG++F K + HM H +P+ C +C K+FK KH + H +I H G K Y+C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI-HTG-----IKPYEC 68
Query: 190 SLCPKAFTHLAALEDH 205
++C K F + H
Sbjct: 69 NICAKRFMWRDSFHRH 84
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 95 NKPFKCDDCDQCFLTKILLNKHKLLHTEGH-LTCNLCGQTFRQKFRLLNHMISHSTEKPF 153
+K + C C + F K ++H +H C +CG+ F+ K L+ HM H+ KP+
Sbjct: 8 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPY 66
Query: 154 SCPICKKQFKRKHEVSKH 171
C IC K+F + +H
Sbjct: 67 ECNICAKRFMWRDSFHRH 84
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 288 NKPFKCDDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHSTQKP 347
+K + C C + F K ++H MH + C CG F K +L HM H+ KP
Sbjct: 8 DKLYPCQ-CGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP 65
Query: 348 FSCSLCGKRF 357
+ C++C KRF
Sbjct: 66 YECNICAKRF 75
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 148 STEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQY 207
S +K + C C K F K + +H + H G + Y C +C K F L H
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSM-HLG-----LRPYGCGVCGKKFKMKHHLVGHMK 58
Query: 208 VHTGQKSHMCNLCSARFTCKGALLGHI 234
+HTG K + CN+C+ RF + + H+
Sbjct: 59 IHTGIKPYECNICAKRFMWRDSFHRHV 85
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYK 242
K Y C C K+FTH + + H +H G + + C +C +F K L+GH+K+ H G K
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI-HTGIK 64
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIV 530
+P+ C C ++F K L H +H + CN C K F+ + RH+
Sbjct: 36 RPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVT 86
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 343 STQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHT 402
S K + C CGK F ++ H +H + Y C +C + F L H +HT
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLG---LRPYGCGVCGKKFKMKHHLVGHMKIHT 61
Query: 403 GQKTRLCTMCPAIF 416
G K C +C F
Sbjct: 62 GIKPYECNICAKRF 75
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
+P+ C C ++F K L H +H + CN C K F
Sbjct: 36 RPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRF 75
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 94 LNKPFKC--DDCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTE 150
+ +P+ C + CD+ F K L+ H +HT + C +C + F Q+ L H+ +H+ E
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 151 KPFSCPICKKQFKRKHEVSKHDRI 174
KPF+C IC ++F H ++H +I
Sbjct: 61 KPFACDICGRKFATLHTRTRHTKI 84
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 150 EKPFSCPI--CKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQY 207
E+P++CP+ C ++F +K + H RI H G+K ++C +C + F+ A+L H
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRI-HTGQK-----PFQCRICMRNFSQQASLNAHIR 55
Query: 208 VHTGQKSHMCNLCSARFTCKGALLGHIKV 236
HTG+K C++C +F H K+
Sbjct: 56 THTGEKPFACDICGRKFATLHTRTRHTKI 84
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 536 RPFSCPV--CKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQFV 593
RP++CPV C ++F +K ++ H R+ H G+K ++C +C + F+ +L H
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRI-HTGQK-----PFQCRICMRNFSQQASLNAHIRT 56
Query: 594 HTGQKTHLCTMCPASYATIGGLRSHIKI 621
HTG+K C +C +AT+ H KI
Sbjct: 57 HTGEKPFACDICGRKFATLHTRTRHTKI 84
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 478 LNKPFKC--DDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTA 535
+ +P+ C + CD+RF K L+ H +H + F C C + F + L HI H+
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60
Query: 536 RPFSCPVCKKQF 547
+PF+C +C ++F
Sbjct: 61 KPFACDICGRKF 72
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 345 QKPFSCSL--CGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHT 402
++P++C + C +RF ++ + H R+H +K ++C +C R F+ A+L H HT
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQK---PFQCRICMRNFSQQASLNAHIRTHT 58
Query: 403 GQKTRLCTMCPAIFASIGGLRSHMKI 428
G+K C +C FA++ H KI
Sbjct: 59 GEKPFACDICGRKFATLHTRTRHTKI 84
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 287 LNKPFKC--DDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHST 344
+ +P+ C + C + F K L+ H + +H + F C C FS++ L H+ +H+
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTG 59
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KPF+C +CG++F + H ++H +K
Sbjct: 60 EKPFACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 324 SCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSL 383
SC FS+K L H+ H+ QKPF C +C + F ++ + H R H + K + C +
Sbjct: 11 SCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE---KPFACDI 67
Query: 384 CPRVFTHLAALEDHQFVHTGQK 405
C R F L H +H QK
Sbjct: 68 CGRKFATLHTRTRHTKIHLRQK 89
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 130 CGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKC 189
C + F QK L H+ H+ +KPF C IC + F ++ ++ H R H G+K + C
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIR-THTGEK-----PFAC 65
Query: 190 SLCPKAFTHLAALEDHQYVHTGQK 213
+C + F L H +H QK
Sbjct: 66 DICGRKFATLHTRTRHTKIHLRQK 89
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 515 CGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKC 574
C + F K L HI IH+ +PF C +C + F ++ + H R H G+K + C
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRT-HTGEK-----PFAC 65
Query: 575 SLCPKAFTYLGALEDHQFVHTGQK 598
+C + F L H +H QK
Sbjct: 66 DICGRKFATLHTRTRHTKIHLRQK 89
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIH 532
KPF+C C + F + LN H H + F+C+ CG+ F + RH IH
Sbjct: 33 KPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIH 85
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
KPF+C C + F + LN H H + F+C+ CG+ F
Sbjct: 33 KPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKF 72
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 671 LNKPFKC--DDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
+ +P+ C + CD+RF K L+ H +H + F C C + F
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNF 44
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 94 LNKPFKC--DDCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTE 150
+ +P+ C + CD+ F L +H +HT + C +C + F + L H+ +H+ E
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 151 KPFSCPICKKQFKRKHEVSKHDRI 174
KPF+C IC ++F R E +H +I
Sbjct: 61 KPFACDICGRKFARSDERKRHTKI 84
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 150 EKPFSCPI--CKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQY 207
E+P++CP+ C ++F R E+++H RI H G+K ++C +C + F+ L H
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRI-HTGQK-----PFQCRICMRNFSRSDHLTTHIR 55
Query: 208 VHTGQKSHMCNLCSARFTCKGALLGHIKV 236
HTG+K C++C +F H K+
Sbjct: 56 THTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 478 LNKPFKC--DDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTA 535
+ +P+ C + CD+RF L +H +H + F C C + F L HI H+
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 536 RPFSCPVCKKQFKRKQDVAGHDRV 559
+PF+C +C ++F R + H ++
Sbjct: 61 KPFACDICGRKFARSDERKRHTKI 84
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 287 LNKPFKC--DDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHST 344
+ +P+ C + C + F L +H + +H + F C C FS +L H+ +H+
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KPF+C +CG++F R + H ++H +K
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 536 RPFSCPV--CKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQFV 593
RP++CPV C ++F R ++ H R+ H G+K ++C +C + F+ L H
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRI-HTGQK-----PFQCRICMRNFSRSDHLTTHIRT 56
Query: 594 HTGQKTHLCTMCPASYATIGGLRSHIKI 621
HTG+K C +C +A + H KI
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 324 SCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSL 383
SC FS L H+ H+ QKPF C +C + F R + + H R H + K + C +
Sbjct: 11 SCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE---KPFACDI 67
Query: 384 CPRVFTHLAALEDHQFVHTGQK 405
C R F + H +H QK
Sbjct: 68 CGRKFARSDERKRHTKIHLRQK 89
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 345 QKPFSCSL--CGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHT 402
++P++C + C +RF R + H R+H +K ++C +C R F+ L H HT
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQK---PFQCRICMRNFSRSDHLTTHIRTHT 58
Query: 403 GQKTRLCTMCPAIFASIGGLRSHMKI 428
G+K C +C FA + H KI
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKI 84
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 515 CGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKC 574
C + F +L RHI IH+ +PF C +C + F R + H R H G+K + C
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEK-----PFAC 65
Query: 575 SLCPKAFTYLGALEDHQFVHTGQK 598
+C + F + H +H QK
Sbjct: 66 DICGRKFARSDERKRHTKIHLRQK 89
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 130 CGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKC 189
C + F + L H+ H+ +KPF C IC + F R ++ H R H G+K + C
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEK-----PFAC 65
Query: 190 SLCPKAFTHLAALEDHQYVHTGQK 213
+C + F + H +H QK
Sbjct: 66 DICGRKFARSDERKRHTKIHLRQK 89
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 479 NKPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIH 532
KPF+C C + F L H H + F+C+ CG+ F + +RH IH
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 671 LNKPFKC--DDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
+ +P+ C + CD+RF L +H +H + F C C + F
Sbjct: 1 MERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNF 44
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 672 NKPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
KPF+C C + F L H H + F+C+ CG+ F
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 72
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 150 EKPFSCPI--CKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQY 207
E+P++CP+ C ++F R E+++H RI H G+K ++C +C + F+ L H
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRI-HTGQK-----PFQCRICMRNFSRSDHLTTHIR 55
Query: 208 VHTGQKSHMCNLCSARFTCKGALLGHIKV 236
HTG+K C++C +F H K+
Sbjct: 56 THTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 94 LNKPFKC--DDCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTE 150
+ +P+ C + CD+ F L +H +HT + C +C + F + L H+ +H+ E
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 151 KPFSCPICKKQFKRKHEVSKHDRI 174
KPF+C IC ++F R E +H +I
Sbjct: 61 KPFACDICGRKFARSDERKRHTKI 84
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 478 LNKPFKC--DDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTA 535
+ +P+ C + CD+RF L +H +H + F C C + F L HI H+
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 536 RPFSCPVCKKQFKRKQDVAGHDRV 559
+PF+C +C ++F R + H ++
Sbjct: 61 KPFACDICGRKFARSDERKRHTKI 84
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 287 LNKPFKC--DDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHST 344
+ +P+ C + C + F L +H + +H + F C C FS +L H+ +H+
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KPF+C +CG++F R + H ++H +K
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 536 RPFSCPV--CKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQFV 593
RP++CPV C ++F R ++ H R+ H G+K ++C +C + F+ L H
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRI-HTGQK-----PFQCRICMRNFSRSDHLTTHIRT 56
Query: 594 HTGQKTHLCTMCPASYATIGGLRSHIKI 621
HTG+K C +C +A + H KI
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 345 QKPFSCSL--CGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHT 402
++P++C + C +RF R + + H R+H +K ++C +C R F+ L H HT
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQK---PFQCRICMRNFSRSDHLTTHIRTHT 58
Query: 403 GQKTRLCTMCPAIFASIGGLRSHMKI 428
G+K C +C FA + H KI
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKI 84
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 324 SCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSL 383
SC FS L H+ H+ QKPF C +C + F R + + H R H + K + C +
Sbjct: 11 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE---KPFACDI 67
Query: 384 CPRVFTHLAALEDHQFVHTGQK 405
C R F + H +H QK
Sbjct: 68 CGRKFARSDERKRHTKIHLRQK 89
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 515 CGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKC 574
C + F +L RHI IH+ +PF C +C + F R + H R H G+K + C
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEK-----PFAC 65
Query: 575 SLCPKAFTYLGALEDHQFVHTGQK 598
+C + F + H +H QK
Sbjct: 66 DICGRKFARSDERKRHTKIHLRQK 89
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 130 CGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKC 189
C + F + L H+ H+ +KPF C IC + F R ++ H R H G+K + C
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEK-----PFAC 65
Query: 190 SLCPKAFTHLAALEDHQYVHTGQK 213
+C + F + H +H QK
Sbjct: 66 DICGRKFARSDERKRHTKIHLRQK 89
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 479 NKPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIH 532
KPF+C C + F L H H + F+C+ CG+ F + +RH IH
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 671 LNKPFKC--DDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
+ +P+ C + CD+RF L +H +H + F C C + F
Sbjct: 1 MERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 44
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 672 NKPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
KPF+C C + F L H H + F+C+ CG+ F
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 72
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 94 LNKPFKC--DDCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTE 150
+ +P+ C + CD+ F L +H +HT + C +C + F + L H+ +H+ E
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 151 KPFSCPICKKQFKRKHEVSKHDRI 174
KPF+C IC ++F R E +H +I
Sbjct: 61 KPFACDICGRKFARSDERKRHTKI 84
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 150 EKPFSCPI--CKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQY 207
E+P++CP+ C ++F R ++++H RI H G+K ++C +C + F+ L H
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRI-HTGQK-----PFQCRICMRNFSRSDHLTTHIR 55
Query: 208 VHTGQKSHMCNLCSARFTCKGALLGHIKV 236
HTG+K C++C +F H K+
Sbjct: 56 THTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 478 LNKPFKC--DDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTA 535
+ +P+ C + CD+RF L +H +H + F C C + F L HI H+
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 536 RPFSCPVCKKQFKRKQDVAGHDRV 559
+PF+C +C ++F R + H ++
Sbjct: 61 KPFACDICGRKFARSDERKRHTKI 84
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 287 LNKPFKC--DDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHST 344
+ +P+ C + C + F L +H + +H + F C C FS +L H+ +H+
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KPF+C +CG++F R + H ++H +K
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 536 RPFSCPV--CKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQFV 593
RP++CPV C ++F R D+ H R+ H G+K ++C +C + F+ L H
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRI-HTGQK-----PFQCRICMRNFSRSDHLTTHIRT 56
Query: 594 HTGQKTHLCTMCPASYATIGGLRSHIKI 621
HTG+K C +C +A + H KI
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 345 QKPFSCSL--CGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHT 402
++P++C + C +RF R + H R+H +K ++C +C R F+ L H HT
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQK---PFQCRICMRNFSRSDHLTTHIRTHT 58
Query: 403 GQKTRLCTMCPAIFASIGGLRSHMKI 428
G+K C +C FA + H KI
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKI 84
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 324 SCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSL 383
SC FS L H+ H+ QKPF C +C + F R + + H R H + K + C +
Sbjct: 11 SCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE---KPFACDI 67
Query: 384 CPRVFTHLAALEDHQFVHTGQK 405
C R F + H +H QK
Sbjct: 68 CGRKFARSDERKRHTKIHLRQK 89
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 515 CGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKC 574
C + F L RHI IH+ +PF C +C + F R + H R H G+K + C
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEK-----PFAC 65
Query: 575 SLCPKAFTYLGALEDHQFVHTGQK 598
+C + F + H +H QK
Sbjct: 66 DICGRKFARSDERKRHTKIHLRQK 89
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 130 CGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKC 189
C + F + L H+ H+ +KPF C IC + F R ++ H R H G+K + C
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEK-----PFAC 65
Query: 190 SLCPKAFTHLAALEDHQYVHTGQK 213
+C + F + H +H QK
Sbjct: 66 DICGRKFARSDERKRHTKIHLRQK 89
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 479 NKPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIH 532
KPF+C C + F L H H + F+C+ CG+ F + +RH IH
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 671 LNKPFKC--DDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
+ +P+ C + CD+RF L +H +H + F C C + F
Sbjct: 1 MERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNF 44
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 672 NKPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
KPF+C C + F L H H + F+C+ CG+ F
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 72
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 66/139 (47%), Gaps = 22/139 (15%)
Query: 90 ENVALNKPFKCDDCDQCFLTKILLNKHKLLHTEG------HL----TCNLCGQTFRQKFR 139
+ L++P K CD+ F T L H + G H+ C G++F+ K++
Sbjct: 20 DEAQLSRPKK--SCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYK 77
Query: 140 LLNHMISHSTEKPFSCPI--CKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSL--CPKA 195
L+NH+ H+ EKPF CP C K F R + H R H G+ K +KC C +
Sbjct: 78 LVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKR-THTGE-----KPFKCEFEGCDRR 131
Query: 196 FTHLAALEDHQYVHTGQKS 214
F + + + H +VHT KS
Sbjct: 132 FANSSDRKKHMHVHTSDKS 150
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 509 YFSCNYCGKTFLHKYKLRRHIVIHSTARPFSCPV--CKKQFKRKQDVAGHDRVVHQGKKL 566
+ C GK+F KYKL HI +H+ +PF CP C K F R +++ H R H G+
Sbjct: 62 WEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKR-THTGE-- 118
Query: 567 IVYKSYKCSL--CPKAFTYLGALEDHQFVHTGQKT 599
K +KC C + F + H VHT K+
Sbjct: 119 ---KPFKCEFEGCDRRFANSSDRKKHMHVHTSDKS 150
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 322 CNSCGLIFSEKKYLRNHMISHSTQKPFSCSL--CGKRFKRENGVINHQRLHQTKKVYKSY 379
C G F K L NH+ H+ +KPF C CGK F R + H+R H + K +
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGE---KPF 121
Query: 380 KCSL--CPRVFTHLAALEDHQFVHTGQKT 406
KC C R F + + + H VHT K+
Sbjct: 122 KCEFEGCDRRFANSSDRKKHMHVHTSDKS 150
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 350 CSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSL--CPRVFTHLAALEDHQFVHTGQKTR 407
C GK FK + ++NH R+H +K + C C ++F L+ H+ HTG+K
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEK---PFPCPFPGCGKIFARSENLKIHKRTHTGEKPF 121
Query: 408 LCTM--CPAIFASIGGLRSHMKI 428
C C FA+ + HM +
Sbjct: 122 KCEFEGCDRRFANSSDRKKHMHV 144
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 300 FLSKILLNQHKKQMHFNKGGFTCN--SCGLIFSEKKYLRNHMISHSTQKPFSCSL--CGK 355
F +K L H + +H + F C CG IF+ + L+ H +H+ +KPF C C +
Sbjct: 72 FKAKYKLVNHIR-VHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDR 130
Query: 356 RFKRENGVINHQRLHQTKKVYKS 378
RF + H +H + K S
Sbjct: 131 RFANSSDRKKHMHVHTSDKSGPS 153
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 150 EKPFSCPI--CKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQY 207
E+P++CP+ C ++F R E+++H RI H G+K ++C +C + F+ L H
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRI-HTGQK-----PFQCRICMRNFSRSDHLTTHIR 54
Query: 208 VHTGQKSHMCNLCSARFTCKGALLGHIKV 236
HTG+K C++C +F H K+
Sbjct: 55 THTGEKPFACDICGRKFARSDERKRHTKI 83
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 96 KPFKC--DDCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKP 152
+P+ C + CD+ F L +H +HT + C +C + F + L H+ +H+ EKP
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 153 FSCPICKKQFKRKHEVSKHDRI 174
F+C IC ++F R E +H +I
Sbjct: 62 FACDICGRKFARSDERKRHTKI 83
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 480 KPFKC--DDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARP 537
+P+ C + CD+RF L +H +H + F C C + F L HI H+ +P
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 61
Query: 538 FSCPVCKKQFKRKQDVAGHDRV 559
F+C +C ++F R + H ++
Sbjct: 62 FACDICGRKFARSDERKRHTKI 83
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 536 RPFSCPV--CKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQFV 593
RP++CPV C ++F R ++ H R+ H G+K ++C +C + F+ L H
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRI-HTGQK-----PFQCRICMRNFSRSDHLTTHIRT 55
Query: 594 HTGQKTHLCTMCPASYATIGGLRSHIKI 621
HTG+K C +C +A + H KI
Sbjct: 56 HTGEKPFACDICGRKFARSDERKRHTKI 83
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 289 KPFKC--DDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHSTQK 346
+P+ C + C + F L +H + +H + F C C FS +L H+ +H+ +K
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 347 PFSCSLCGKRFKRENGVINHQRLH 370
PF+C +CG++F R + H ++H
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 345 QKPFSCSL--CGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHT 402
++P++C + C +RF R + + H R+H +K ++C +C R F+ L H HT
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQK---PFQCRICMRNFSRSDHLTTHIRTHT 57
Query: 403 GQKTRLCTMCPAIFASIGGLRSHMKI 428
G+K C +C FA + H KI
Sbjct: 58 GEKPFACDICGRKFARSDERKRHTKI 83
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 324 SCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSL 383
SC FS L H+ H+ QKPF C +C + F R + + H R H + K + C +
Sbjct: 10 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE---KPFACDI 66
Query: 384 CPRVFTHLAALEDHQFVHTGQ 404
C R F + H +H Q
Sbjct: 67 CGRKFARSDERKRHTKIHLRQ 87
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 130 CGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKC 189
C + F + L H+ H+ +KPF C IC + F R ++ H R H G+K + C
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEK-----PFAC 64
Query: 190 SLCPKAFTHLAALEDHQYVHTGQ 212
+C + F + H +H Q
Sbjct: 65 DICGRKFARSDERKRHTKIHLRQ 87
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 479 NKPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIH 532
KPF+C C + F L H H + F+C+ CG+ F + +RH IH
Sbjct: 31 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 672 NKPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
KPF+C C + F L H H + F+C+ CG+ F
Sbjct: 31 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 71
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 673 KPFKC--DDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
+P+ C + CD+RF L +H +H + F C C + F
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 43
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 94 LNKPFKC--DDCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTE 150
+ +P+ C + CD+ F L +H +HT + C +C + F + L H+ +H+ E
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 151 KPFSCPICKKQFKRKHEVSKHDRI 174
KPF+C IC ++F R E +H +I
Sbjct: 61 KPFACDICGRKFARSDERKRHTKI 84
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 478 LNKPFKC--DDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTA 535
+ +P+ C + CD+RF L +H +H + F C C + F L HI H+
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 536 RPFSCPVCKKQFKRKQDVAGHDRV 559
+PF+C +C ++F R + H ++
Sbjct: 61 KPFACDICGRKFARSDERKRHTKI 84
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 287 LNKPFKC--DDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHST 344
+ +P+ C + C + F L +H + +H + F C C FS +L H+ +H+
Sbjct: 1 MERPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KPF+C +CG++F R + H ++H +K
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 150 EKPFSCPI--CKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQY 207
E+P++CP+ C ++F + +++H RI H G+K ++C +C + F+ L H
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRI-HTGQK-----PFQCRICMRNFSRSDHLTTHIR 55
Query: 208 VHTGQKSHMCNLCSARFTCKGALLGHIKV 236
HTG+K C++C +F H K+
Sbjct: 56 THTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 324 SCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSL 383
SC FS+ L H+ H+ QKPF C +C + F R + + H R H + K + C +
Sbjct: 11 SCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE---KPFACDI 67
Query: 384 CPRVFTHLAALEDHQFVHTGQK 405
C R F + H +H QK
Sbjct: 68 CGRKFARSDERKRHTKIHLRQK 89
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 345 QKPFSCSL--CGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHT 402
++P++C + C +RF + + H R+H +K ++C +C R F+ L H HT
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQK---PFQCRICMRNFSRSDHLTTHIRTHT 58
Query: 403 GQKTRLCTMCPAIFASIGGLRSHMKI 428
G+K C +C FA + H KI
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKI 84
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 536 RPFSCPV--CKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQFV 593
RP++CPV C ++F + + H R+ H G+K ++C +C + F+ L H
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRI-HTGQK-----PFQCRICMRNFSRSDHLTTHIRT 56
Query: 594 HTGQKTHLCTMCPASYATIGGLRSHIKI 621
HTG+K C +C +A + H KI
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 515 CGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKC 574
C + F L RHI IH+ +PF C +C + F R + H R H G+K + C
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEK-----PFAC 65
Query: 575 SLCPKAFTYLGALEDHQFVHTGQK 598
+C + F + H +H QK
Sbjct: 66 DICGRKFARSDERKRHTKIHLRQK 89
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 130 CGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKC 189
C + F Q L H+ H+ +KPF C IC + F R ++ H R H G+K + C
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEK-----PFAC 65
Query: 190 SLCPKAFTHLAALEDHQYVHTGQK 213
+C + F + H +H QK
Sbjct: 66 DICGRKFARSDERKRHTKIHLRQK 89
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 447 TCSVDEINKE-NEEGATIRKVKPHEDSKEYMALNKPFKCDDCDQRFLTKILLNKHKLLHF 505
C V+ ++ ++ G+ R ++ H KPF+C C + F L H H
Sbjct: 6 ACPVESCDRRFSQSGSLTRHIRIHTG-------QKPFQCRICMRNFSRSDHLTTHIRTHT 58
Query: 506 DKDYFSCNYCGKTFLHKYKLRRHIVIH 532
+ F+C+ CG+ F + +RH IH
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKIH 85
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 570 KSYKCSL--CPKAFTYLGALEDHQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHGLK 627
+ Y C + C + F+ G+L H +HTGQK C +C +++ L +HI+ H G K
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEK 61
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 640 TCSVDEINKE-NEEGATIRKVKPHEDSKEYMALNKPFKCDDCDQRFLTKILLNKHKLLHF 698
C V+ ++ ++ G+ R ++ H KPF+C C + F L H H
Sbjct: 6 ACPVESCDRRFSQSGSLTRHIRIHTG-------QKPFQCRICMRNFSRSDHLTTHIRTHT 58
Query: 699 DKDYFSCNYCGKTF 712
+ F+C+ CG+ F
Sbjct: 59 GEKPFACDICGRKF 72
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 150 EKPFSCPI--CKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQY 207
E+P++CP+ C ++F R E+++H RI H G+K ++C +C + F+ L H
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRI-HTGQK-----PFQCRICMRNFSRSDHLTTHIR 55
Query: 208 VHTGQKSHMCNLCSARFTCKGALLGHIKV 236
HTG+K C++C +F H K+
Sbjct: 56 THTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 96 KPFKC--DDCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKP 152
+P+ C + CD+ F L +H +HT + C +C + F + L H+ +H+ EKP
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 153 FSCPICKKQFKRKHEVSKHDRI 174
F+C IC ++F R E +H +I
Sbjct: 63 FACDICGRKFARSDERKRHTKI 84
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 480 KPFKC--DDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARP 537
+P+ C + CD+RF L +H +H + F C C + F L HI H+ +P
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 538 FSCPVCKKQFKRKQDVAGHDRV 559
F+C +C ++F R + H ++
Sbjct: 63 FACDICGRKFARSDERKRHTKI 84
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 289 KPFKC--DDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHSTQK 346
+P+ C + C + F L +H + +H + F C C FS +L H+ +H+ +K
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 347 PFSCSLCGKRFKRENGVINHQRLH 370
PF+C +CG++F R + H ++H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 536 RPFSCPV--CKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQFV 593
RP++CPV C ++F R ++ H R+ H G+K ++C +C + F+ L H
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRI-HTGQK-----PFQCRICMRNFSRSDHLTTHIRT 56
Query: 594 HTGQKTHLCTMCPASYATIGGLRSHIKI 621
HTG+K C +C +A + H KI
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 345 QKPFSCSL--CGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHT 402
++P++C + C +RF R + + H R+H +K ++C +C R F+ L H HT
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQK---PFQCRICMRNFSRSDHLTTHIRTHT 58
Query: 403 GQKTRLCTMCPAIFASIGGLRSHMKI 428
G+K C +C FA + H KI
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKI 84
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 324 SCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSL 383
SC FS L H+ H+ QKPF C +C + F R + + H R H + K + C +
Sbjct: 11 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE---KPFACDI 67
Query: 384 CPRVFTHLAALEDHQFVH 401
C R F + H +H
Sbjct: 68 CGRKFARSDERKRHTKIH 85
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 130 CGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKC 189
C + F + L H+ H+ +KPF C IC + F R ++ H R H G+K + C
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEK-----PFAC 65
Query: 190 SLCPKAFTHLAALEDHQYVH 209
+C + F + H +H
Sbjct: 66 DICGRKFARSDERKRHTKIH 85
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 479 NKPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIH 532
KPF+C C + F L H H + F+C+ CG+ F + +RH IH
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 672 NKPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
KPF+C C + F L H H + F+C+ CG+ F
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 72
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 673 KPFKC--DDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
+P+ C + CD+RF L +H +H + F C C + F
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 44
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 94 LNKPFKC--DDCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTE 150
+ +P+ C + CD+ F L +H +HT + C +C + F + L H+ +H+ E
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 151 KPFSCPICKKQFKRKHEVSKHDRI 174
KPF+C IC ++F R E +H +I
Sbjct: 61 KPFACDICGRKFARSDERKRHTKI 84
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 478 LNKPFKC--DDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTA 535
+ +P+ C + CD+RF L +H +H + F C C + F L HI H+
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60
Query: 536 RPFSCPVCKKQFKRKQDVAGHDRV 559
+PF+C +C ++F R + H ++
Sbjct: 61 KPFACDICGRKFARSDERKRHTKI 84
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 287 LNKPFKC--DDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHST 344
+ +P+ C + C + F L +H + +H + F C C FS +L H+ +H+
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KPF+C +CG++F R + H ++H +K
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 150 EKPFSCPI--CKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQY 207
E+P++CP+ C ++F +++H RI H G+K ++C +C + F+ L H
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRI-HTGQK-----PFQCRICMRNFSRSDHLTTHIR 55
Query: 208 VHTGQKSHMCNLCSARFTCKGALLGHIKV 236
HTG+K C++C +F H K+
Sbjct: 56 THTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 324 SCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSL 383
SC FS+ L H+ H+ QKPF C +C + F R + + H R H + K + C +
Sbjct: 11 SCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE---KPFACDI 67
Query: 384 CPRVFTHLAALEDHQFVHTGQK 405
C R F + H +H QK
Sbjct: 68 CGRKFARSDERKRHTKIHLRQK 89
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 536 RPFSCPV--CKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQFV 593
RP++CPV C ++F ++ H R+ H G+K ++C +C + F+ L H
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRI-HTGQK-----PFQCRICMRNFSRSDHLTTHIRT 56
Query: 594 HTGQKTHLCTMCPASYATIGGLRSHIKI 621
HTG+K C +C +A + H KI
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 345 QKPFSCSL--CGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHT 402
++P++C + C +RF + + H R+H +K ++C +C R F+ L H HT
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQK---PFQCRICMRNFSRSDHLTTHIRTHT 58
Query: 403 GQKTRLCTMCPAIFASIGGLRSHMKI 428
G+K C +C FA + H KI
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKI 84
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 515 CGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKC 574
C + F L RHI IH+ +PF C +C + F R + H R H G+K + C
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTGEK-----PFAC 65
Query: 575 SLCPKAFTYLGALEDHQFVHTGQK 598
+C + F + H +H QK
Sbjct: 66 DICGRKFARSDERKRHTKIHLRQK 89
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 130 CGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKC 189
C + F L H+ H+ +KPF C IC + F R ++ H R H G+K + C
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEK-----PFAC 65
Query: 190 SLCPKAFTHLAALEDHQYVHTGQK 213
+C + F + H +H QK
Sbjct: 66 DICGRKFARSDERKRHTKIHLRQK 89
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIH 532
KPF+C C + F L H H + F+C+ CG+ F + +RH IH
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 671 LNKPFKC--DDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
+ +P+ C + CD+RF L +H +H + F C C + F
Sbjct: 1 MERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNF 44
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
KPF+C C + F L H H + F+C+ CG+ F
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 72
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 121 TEGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKK 180
T+ C CG+ F + + LL H +H+ E+P++C IC K F+R+ + H R +H +
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSKE- 71
Query: 181 YNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKS 214
K +KC C K F L H+ +H S
Sbjct: 72 ----KPFKCQECGKGFCQSRTLAVHKTLHMQTSS 101
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 507 KDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKL 566
K F C +CG+ F Y L H H+ RP++C +C K F+R+ + H R +H +
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSKE-- 71
Query: 567 IVYKSYKCSLCPKAFTYLGALEDHQFVH 594
K +KC C K F L H+ +H
Sbjct: 72 ---KPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 316 NKGGFTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKV 375
K F C CG F++ L H +H+ ++P++C +C K F+R++ + +H+ +H +
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKE-- 71
Query: 376 YKSYKCSLCPRVFTHLAALEDHQFVH 401
K +KC C + F L H+ +H
Sbjct: 72 -KPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 289 KPFKCDDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHSTQKPF 348
K F C C + F L H++ H ++ +TC+ C F + +LR+H HS +KPF
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 349 SCSLCGKRFKRENGVINHQRLH 370
C CGK F + + H+ LH
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLH 96
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 149 TEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYV 208
T+K F C C + F + + + H+R + + Y C +C KAF L DH+Y+
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIHERT------HTDERPYTCDICHKAFRRQDHLRDHRYI 67
Query: 209 HTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYKRP 244
H+ +K C C F C+ L K LH P
Sbjct: 68 HSKEKPFKCQECGKGF-CQSRTLAVHKTLHMQTSSP 102
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 344 TQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTG 403
T+K F C CG+ F + ++ H+R H + + Y C +C + F L DH+++H+
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIHERTHTDE---RPYTCDICHKAFRRQDHLRDHRYIHSK 70
Query: 404 QKTRLCTMCPAIFASIGGLRSH 425
+K C C F L H
Sbjct: 71 EKPFKCQECGKGFCQSRTLAVH 92
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFS 539
K F C C + F L H+ H D+ ++C+ C K F + LR H IHS +PF
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFK 75
Query: 540 CPVCKKQFKRKQDVAGH 556
C C K F + + +A H
Sbjct: 76 CQECGKGFCQSRTLAVH 92
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 11/98 (11%)
Query: 534 TARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQFV 593
T + F C C + F + ++ H+R H ++ Y C +C KAF L DH+++
Sbjct: 14 TKKEFICKFCGRHFTKSYNLLIHERT-HTDER-----PYTCDICHKAFRRQDHLRDHRYI 67
Query: 594 HTGQKTHLCTMCPASYATIGGLRSHIKIVHHGLKTQQS 631
H+ +K C C G +S VH L Q S
Sbjct: 68 HSKEKPFKCQECGK-----GFCQSRTLAVHKTLHMQTS 100
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 479 NKPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIH 532
+P+ CD C + F + L H+ +H + F C CGK F L H +H
Sbjct: 43 ERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 672 NKPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
+P+ CD C + F + L H+ +H + F C CGK F
Sbjct: 43 ERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGF 83
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 23/55 (41%)
Query: 374 KVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCTMCPAIFASIGGLRSHMKI 428
K K + C C R FT L H+ HT ++ C +C F LR H I
Sbjct: 13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYI 67
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 95 NKPFKCDDCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISH 147
+P+ CD C + F + L H+ +H+ E C CG+ F Q L H H
Sbjct: 43 ERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 484 CDDCDQRFLTKILLNKHKLLHFDKDYFSCNY--CGKTFLHKYKLRRHIVIHSTARPFSCP 541
C +C + F+ L +H+L+H + F C + CGK F + LR H+ IH+ RP+ CP
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCP 96
Query: 542 V--CKKQFKRKQDVAGH 556
C K+F + ++ H
Sbjct: 97 FDGCNKKFAQSTNLKSH 113
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 321 TCNSCGLIFSEKKYLRNHMISHSTQKPFSCSL--CGKRFKRENGVINHQRLHQTKKVYKS 378
C CG F E L+ H + H+ +KPF C+ CGKRF + + H R+H +
Sbjct: 36 VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD---RP 92
Query: 379 YKCSL--CPRVFTHLAALEDHQFVHTGQK 405
Y C C + F L+ H H K
Sbjct: 93 YVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 13/104 (12%)
Query: 73 KEESTTKKKVNTHGASKENVALNKPFKCDDCDQCFLTKILLNKHKLLHT-EGHLTCNL-- 129
++ S +K ++THG + C +C + F+ L +H+L+HT E C
Sbjct: 18 RDNSAMRKHLHTHGP--------RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEG 69
Query: 130 CGQTFRQKFRLLNHMISHSTEKPFSCPI--CKKQFKRKHEVSKH 171
CG+ F F L H+ H+ ++P+ CP C K+F + + H
Sbjct: 70 CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 11/116 (9%)
Query: 487 CDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFSCPV--CK 544
C + F + KH H + + C CGK F+ KL+RH ++H+ +PF C C
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRVHV-CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 545 KQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSL--CPKAFTYLGALEDHQFVHTGQK 598
K+F ++ H R +H G + Y C C K F L+ H H K
Sbjct: 72 KRFSLDFNLRTHVR-IHTGD-----RPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 49/118 (41%), Gaps = 14/118 (11%)
Query: 103 CDQCFLTKILLNKHKLLHTEGHLT--CNLCGQTFRQKFRLLNHMISHSTEKPFSCPI--C 158
C + F + KH LHT G C CG+ F + +L H + H+ EKPF C C
Sbjct: 13 CTKMFRDNSAMRKH--LHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGC 70
Query: 159 KKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSL--CPKAFTHLAALEDHQYVHTGQKS 214
K+F + H RI H G + Y C C K F L+ H H K+
Sbjct: 71 GKRFSLDFNLRTHVRI-HTGD-----RPYVCPFDGCNKKFAQSTNLKSHILTHAKAKN 122
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 15/105 (14%)
Query: 151 KPFSCP--ICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYV 208
+ +CP C K F+ + KH + G + +V C+ C KAF + L+ HQ V
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKH--LHTHGPRVHV-----CAECGKAFVESSKLKRHQLV 56
Query: 209 HTGQKSHMCNL--CSARFTCKGALLGHIKVLHEG---YKRPQESC 248
HTG+K C C RF+ L H+++ H G Y P + C
Sbjct: 57 HTGEKPFQCTFEGCGKRFSLDFNLRTHVRI-HTGDRPYVCPFDGC 100
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 536 RPFSCP--VCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQFV 593
R +CP C K F+ + H G ++ V C+ C KAF L+ HQ V
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHT--HGPRVHV-----CAECGKAFVESSKLKRHQLV 56
Query: 594 HTGQKTHLCTM--CPASYATIGGLRSHIKI 621
HTG+K CT C ++ LR+H++I
Sbjct: 57 HTGEKPFQCTFEGCGKRFSLDFNLRTHVRI 86
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 353 CGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCTM- 411
C K F+ + + H H + + C+ C + F + L+ HQ VHTG+K CT
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPR----VHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFE 68
Query: 412 -CPAIFASIGGLRSHMKI 428
C F+ LR+H++I
Sbjct: 69 GCGKRFSLDFNLRTHVRI 86
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 324 SCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSL 383
SC FS+K L H+ H+ QKPF C +C + F + G+ H R H + K + C +
Sbjct: 11 SCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE---KPFACDI 67
Query: 384 CPRVFTHLAALEDHQFVHTGQK 405
C R F L + H +H QK
Sbjct: 68 CGRKFATLHTRDRHTKIHLRQK 89
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 94 LNKPFKC--DDCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTE 150
+ +P+ C + CD+ F K L+ H +HT + C +C + F Q L H+ +H+ E
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 151 KPFSCPICKKQFKRKHEVSKHDRI 174
KPF+C IC ++F H +H +I
Sbjct: 61 KPFACDICGRKFATLHTRDRHTKI 84
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 536 RPFSCPV--CKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQFV 593
RP++CPV C ++F +K ++ H R+ H G+K ++C +C + F+ L H
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRI-HTGQK-----PFQCRICMRNFSQHTGLNQHIRT 56
Query: 594 HTGQKTHLCTMCPASYATIGGLRSHIKI 621
HTG+K C +C +AT+ H KI
Sbjct: 57 HTGEKPFACDICGRKFATLHTRDRHTKI 84
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 478 LNKPFKC--DDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTA 535
+ +P+ C + CD+RF K L+ H +H + F C C + F L +HI H+
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60
Query: 536 RPFSCPVCKKQF 547
+PF+C +C ++F
Sbjct: 61 KPFACDICGRKF 72
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 150 EKPFSCPI--CKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQY 207
E+P++CP+ C ++F +K + H RI H G+K ++C +C + F+ L H
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRI-HTGQK-----PFQCRICMRNFSQHTGLNQHIR 55
Query: 208 VHTGQKSHMCNLCSARFTCKGALLGHIKV 236
HTG+K C++C +F H K+
Sbjct: 56 THTGEKPFACDICGRKFATLHTRDRHTKI 84
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 345 QKPFSCSL--CGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHT 402
++P++C + C +RF ++ + H R+H +K ++C +C R F+ L H HT
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQK---PFQCRICMRNFSQHTGLNQHIRTHT 58
Query: 403 GQKTRLCTMCPAIFASIGGLRSHMKI 428
G+K C +C FA++ H KI
Sbjct: 59 GEKPFACDICGRKFATLHTRDRHTKI 84
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 287 LNKPFKC--DDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHST 344
+ +P+ C + C + F K L+ H + +H + F C C FS+ L H+ +H+
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTG 59
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KPF+C +CG++F + H ++H +K
Sbjct: 60 EKPFACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 130 CGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKC 189
C + F QK L H+ H+ +KPF C IC + F + +++H R H G+K + C
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIR-THTGEK-----PFAC 65
Query: 190 SLCPKAFTHLAALEDHQYVHTGQKS 214
+C + F L + H +H QK
Sbjct: 66 DICGRKFATLHTRDRHTKIHLRQKD 90
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 515 CGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKC 574
C + F K L HI IH+ +PF C +C + F + + H R H G+ K + C
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIR-THTGE-----KPFAC 65
Query: 575 SLCPKAFTYLGALEDHQFVHTGQK 598
+C + F L + H +H QK
Sbjct: 66 DICGRKFATLHTRDRHTKIHLRQK 89
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIH 532
KPF+C C + F LN+H H + F+C+ CG+ F + RH IH
Sbjct: 33 KPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIH 85
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
KPF+C C + F LN+H H + F+C+ CG+ F
Sbjct: 33 KPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKF 72
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 671 LNKPFKC--DDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
+ +P+ C + CD+RF K L+ H +H + F C C + F
Sbjct: 1 MERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNF 44
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQT 372
+ C CG FS L H H+ +KP+ C CGK F + +G+INHQR+H +
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHT 402
+KP+ C CGK F R + ++ HQR+H + K YKC C + F+ + L +HQ +HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGE---KPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 150 EKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVH 209
EKP+ C C K F R + +H R VH G+K YKC C KAF+ + L +HQ +H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQR-VHTGEK-----PYKCLECGKAFSQNSGLINHQRIH 65
Query: 210 TGQKS 214
T S
Sbjct: 66 TSGPS 70
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCNLCSARFTCKGALLGHIKV 236
K Y C C KAF+ + L HQ VHTG+K + C C F+ L+ H ++
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI 64
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query: 536 RPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQFVHT 595
+P+ C C K F R + H RV H G+K YKC C KAF+ L +HQ +HT
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRV-HTGEK-----PYKCLECGKAFSQNSGLINHQRIHT 66
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCTMCPASYATIGGLRSHIKI 621
K Y C C KAF+ L HQ VHTG+K + C C +++ GL +H +I
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI 64
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCTMCPAIFASIGGLRSHMKI 428
K Y C C + F+ + L HQ VHTG+K C C F+ GL +H +I
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI 64
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTA 535
KP+ C +C + F +L +H+ +H + + C CGK F L H IH++
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG 68
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHST 149
KP+ C +C + F +L +H+ +HT E C CG+ F Q L+NH H++
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 127 CNLCGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRI 174
C CG+ F + L+ H H+ EKP+ C C K F + + H RI
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI 64
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRV 559
+ C CGK F L +H +H+ +P+ C C K F + + H R+
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI 64
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 289 KPFKCDDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHST 344
KP+ C +C + F +L QH++ +H + + C CG FS+ L NH H++
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
KP+ C +C + F +L +H+ +H + + C CGK F
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAF 52
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 480 KPFKCD--DCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARP 537
KP++CD DC++RF L +H+ H F C C + F L+ H H+ +P
Sbjct: 35 KPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKP 94
Query: 538 FSC--PVCKKQFKRKQDVAGH 556
FSC P C+K+F R ++ H
Sbjct: 95 FSCRWPSCQKKFARSDELVRH 115
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 8/119 (6%)
Query: 480 KPFKC--DDCDQRFLTKILLNKHKLLHFDKDYFSCNY--CGKTFLHKYKLRRHIVIHSTA 535
+PF C C++R+ L H H + + C++ C + F +L+RH H+
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 536 RPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQFVH 594
+PF C C+++F R + H R H G+K S + C K F L H +H
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTR-THTGEKPF---SCRWPSCQKKFARSDELVRHHNMH 119
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 140 LLNHMISHSTEKPFSCPI--CKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFT 197
L H H+ EKP+ C C+++F R ++ +H R ++ K ++C C + F+
Sbjct: 24 LQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR------RHTGVKPFQCKTCQRKFS 77
Query: 198 HLAALEDHQYVHTGQKSHMCNL--CSARFTCKGALLGH 233
L+ H HTG+K C C +F L+ H
Sbjct: 78 RSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 343 STQKPFSCSL--CGKRFKRENGVINHQRLHQTKKVYKSYKCSL--CPRVFTHLAALEDHQ 398
S ++PF C+ C KR+ + + + H R H +K Y+C C R F+ L+ HQ
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEK---PYQCDFKDCERRFSRSDQLKRHQ 58
Query: 399 FVHTGQKTRLCTMCPAIFASIGGLRSHMKIVHHGLKTQQSCQSSHESKTCSVDEI 453
HTG K C C F+ L++H + H G K S + K DE+
Sbjct: 59 RRHTGVKPFQCKTCQRKFSRSDHLKTHTR-THTGEKPFSCRWPSCQKKFARSDEL 112
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 6/117 (5%)
Query: 289 KPFKC--DDCFQCFLSKILLNQHKKQMHFNKGGFTCN--SCGLIFSEKKYLRNHMISHST 344
+PF C C + + L H ++ H + + C+ C FS L+ H H+
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRK-HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG 63
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVH 401
KPF C C ++F R + + H R H +K + S + C + F L H +H
Sbjct: 64 VKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPF-SCRWPSCQKKFARSDELVRHHNMH 119
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 148 STEKPFSC--PICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSL--CPKAFTHLAALE 203
S ++PF C P C K++ + + H R K+ K Y+C C + F+ L+
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSR------KHTGEKPYQCDFKDCERRFSRSDQLK 55
Query: 204 DHQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYK 242
HQ HTG K C C +F+ L H + H G K
Sbjct: 56 RHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT-HTGEK 93
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 11/118 (9%)
Query: 533 STARPFSC--PVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSL--CPKAFTYLGALE 588
S RPF C P C K++ + + H R H G+K Y+C C + F+ L+
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRK-HTGEK-----PYQCDFKDCERRFSRSDQLK 55
Query: 589 DHQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHGLKTQQSCQSSHESKTCSVDEI 646
HQ HTG K C C ++ L++H + H G K S + K DE+
Sbjct: 56 RHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTR-THTGEKPFSCRWPSCQKKFARSDEL 112
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 13/125 (10%)
Query: 92 VALNKPFKC--DDCDQCFLTKILLNKHKLLHT-EGHLTCNL--CGQTFRQKFRLLNHMIS 146
+ +PF C C++ + L H HT E C+ C + F + +L H
Sbjct: 1 ASEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR 60
Query: 147 HSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSL--CPKAFTHLAALED 204
H+ KPF C C+++F R + H R H G+ K + C C K F L
Sbjct: 61 HTGVKPFQCKTCQRKFSRSDHLKTHTR-THTGE-----KPFSCRWPSCQKKFARSDELVR 114
Query: 205 HQYVH 209
H +H
Sbjct: 115 HHNMH 119
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 673 KPFKCD--DCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
KP++CD DC++RF L +H+ H F C C + F
Sbjct: 35 KPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKF 76
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 17/154 (11%)
Query: 483 KCDDCDQRFLTKILLNKH---KLLHFDKDYFSCNYCG-----KTFLHKYKLRRHIVIHST 534
+ D C Q F ++ L H + +H ++ F C++ G + F +Y L H+ H+
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 535 ARPFSCPV--CKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQ- 591
+P C C+K + R +++ H R H G+K + + CS KAF+ HQ
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRS-HTGEKPYMCEHEGCS---KAFSNASDRAKHQN 120
Query: 592 FVHTGQKTHLCTM--CPASYATIGGLRSHIKIVH 623
H+ +K ++C + C Y LR H+K VH
Sbjct: 121 RTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 22/156 (14%)
Query: 99 KCDDCDQCFLTKILLNKH---KLLHTE-GHLTCNLCG-----QTFRQKFRLLNHMISHST 149
+ D C Q F ++ L H + +H E C+ G + F+ ++ L+ HM H+
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 150 EKPFSCPI--CKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS--LCPKAFTHLAALEDH 205
EKP C C+K + R + H R H G+K Y C C KAF++ + H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLR-SHTGEK-----PYMCEHEGCSKAFSNASDRAKH 118
Query: 206 Q-YVHTGQKSHMCNL--CSARFTCKGALLGHIKVLH 238
Q H+ +K ++C L C+ R+T +L H+K +H
Sbjct: 119 QNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 15/120 (12%)
Query: 323 NSCGLIFSEKKYLRNHMIS---HSTQKPFSCSLCG-----KRFKRENGVINHQRLHQTKK 374
+ C F ++ L +H+ S H +K F C G + FK + ++ H R H +K
Sbjct: 7 DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEK 66
Query: 375 VYKSYKCSL--CPRVFTHLAALEDHQFVHTGQKTRLC--TMCPAIFASIGGLRSHMKIVH 430
+KC+ C + ++ L L+ H HTG+K +C C F++ H H
Sbjct: 67 ---PHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTH 123
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 321 TCNSCGLIFSEKKYLRNHMISHSTQKPFSC--SLCGKRFKRENGVINHQRLHQTKKVYKS 378
T C +S + L+ H+ SH+ +KP+ C C K F + HQ ++T K
Sbjct: 71 TFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQ--NRTHSNEKP 128
Query: 379 YKCSL--CPRVFTHLAALEDH 397
Y C L C + +T ++L H
Sbjct: 129 YVCKLPGCTKRYTDPSSLRKH 149
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHGLK 627
K YKC C +F Y G L H+ VHTG+K + C +C A + L++H +I H G K
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI-HSGEK 72
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%)
Query: 479 NKPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARP 537
+KP+KCD C F K L HK +H + + CN CG F L+ H IHS +P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 95 NKPFKCDDCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKP 152
+KP+KCD C F K L HK +HT E CN+CG F + L H HS EKP
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYK 242
K YKC C +F + L H+ VHTG+K + CN+C A+F L H ++ H G K
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI-HSGEK 72
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 127 CNLCGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKK 180
C+ C +FR K L +H H+ EKP+ C IC QF R + H RI H G+K
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI-HSGEK 72
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+ C+ C F K L +H H+ +KP+ C++CG +F R + H R+H +K
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCTMCPAIFASIGGLRSHMKIVHHGLK 434
K YKC C F + L H+ VHTG+K C +C A F L++H +I H G K
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRI-HSGEK 72
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 506 DKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKK 565
DK Y C+ C +F +K L H +H+ +P+ C +C QF R ++ H R +H G+K
Sbjct: 15 DKPY-KCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR-IHSGEK 72
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 150 EKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVH 209
+KP+ C C+ F+ K ++ H + VH G+ K Y+C++C F A L+ H +H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASH-KTVHTGE-----KPYRCNICGAQFNRPANLKTHTRIH 68
Query: 210 TGQK 213
+G+K
Sbjct: 69 SGEK 72
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 288 NKPFKCDDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHSTQKP 347
+KP+KCD C F K L HK +H + + CN CG F+ L+ H HS +KP
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHK-TVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 346 KPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
KP+ C C F+ + + +H+ +H + K Y+C++C F A L+ H +H+G+K
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGE---KPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 672 NKPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
+KP+KCD C F K L HK +H + + CN CG F
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQF 55
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 121 TEGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKK 180
+ G C +CG+ F +K +L HM H+ KP+ C C ++KH RI
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI------ 58
Query: 181 YNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQ 212
++ + +KC +CP A + + L H HTG
Sbjct: 59 HSDERPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 316 NKGGFTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKV 375
+ G C CG FS K L+ HM H+ KP+ C C + + H R+H +
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE-- 62
Query: 376 YKSYKCSLCPRVFTHLAALEDHQFVHTGQ 404
+ +KC +CP + + L H HTG
Sbjct: 63 -RPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 341 SHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFV 400
S + P C +CGK F R++ + H R H K YKC C ++L H +
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTG---VKPYKCKTCDYAAADSSSLNKHLRI 58
Query: 401 HTGQKTRLCTMCPAIFASIGGLRSHMK 427
H+ ++ C +CP + L H++
Sbjct: 59 HSDERPFKCQICPYASRNSSQLTVHLR 85
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 290 PFKCDDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHSTQKPFS 349
P KC+ C +CF K L H + H + C +C ++ L H+ HS ++PF
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK 66
Query: 350 CSLCGKRFKRENGVINHQRLH 370
C +C + + + H R H
Sbjct: 67 CQICPYASRNSSQLTVHLRSH 87
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 512 CNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKS 571
C CGK F K KL+ H+ H+ +P+ C C + H R+ H ++
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-HSDER-----P 64
Query: 572 YKCSLCPKAFTYLGALEDHQFVHTGQ 597
+KC +CP A L H HTG
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 31/78 (39%)
Query: 481 PFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
P KC+ C + F K L H H + C C L +H+ IHS RPF C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 541 PVCKKQFKRKQDVAGHDR 558
+C + + H R
Sbjct: 68 QICPYASRNSSQLTVHLR 85
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 97 PFKCDDCDQCFLTKILLNKHKLLHTE-GHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
P KC+ C +CF K L H HT C C L H+ HS E+PF C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 156 PICKKQFKRKHEVSKHDR 173
IC + +++ H R
Sbjct: 68 QICPYASRNSSQLTVHLR 85
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 534 TARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQFV 593
++ P C VC K F RK + H R H G K YKC C A +L H +
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHMRC-HTG-----VKPYKCKTCDYAAADSSSLNKHLRI 58
Query: 594 HTGQKTHLCTMCPASYATIGGLRSHIK 620
H+ ++ C +CP + L H++
Sbjct: 59 HSDERPFKCQICPYASRNSSQLTVHLR 85
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 146 SHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDH 205
S + P C +C K F RK ++ H R H G K YKC C A ++L H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMR-CHTG-----VKPYKCKTCDYAAADSSSLNKH 55
Query: 206 QYVHTGQKSHMCNLC 220
+H+ ++ C +C
Sbjct: 56 LRIHSDERPFKCQIC 70
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHS 533
KP+KC CD LNKH +H D+ F C C + +L H+ H+
Sbjct: 35 KPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHT 88
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 79 KKKVNTHGASKENVALNKPFKCDDCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQK 137
K K+ TH V KP+KC CD LNKH +H+ E C +C R
Sbjct: 21 KDKLKTHMRCHTGV---KPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNS 77
Query: 138 FRLLNHMISHSTE 150
+L H+ SH+ +
Sbjct: 78 SQLTVHLRSHTGD 90
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYC 708
KP+KC CD LNKH +H D+ F C C
Sbjct: 35 KPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC 70
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 572 YKCSLCPKAFTYLGALEDHQFVHTGQKTHLCTMCPASYATIGGLRSHIKI 621
+KC +C K F+ L+ H HTG K + C C + A L H++I
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI 58
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 379 YKCSLCPRVFTHLAALEDHQFVHTGQKTRLCTMCPAIFASIGGLRSHMKI 428
+KC +C + F+ L+ H HTG K C C A L H++I
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI 58
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 187 YKCSLCPKAFTHLAALEDHQYVHTGQKSHMCNLCSARFTCKGALLGHIKV 236
+KC +C K F+ L+ H HTG K + C C +L H+++
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI 58
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCNLCSARFTCKGALLGHIKV 236
+ YKC C K+F+H + L H+ HTG+K + C+ C F + L+GH +V
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV 68
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLH 370
+ C+ CG FS L H +H+ +KP+ C CGK F + + +I H R+H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 506 DKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRV 559
++ + C+ CGK+F H L +H H+ +P+ C C K F ++ + GH RV
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV 68
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 482 FKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFS 539
+KCD+C + F L+KH+ H + + C+ CGK F+ + L H +H+ + P S
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 98 FKCDDCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFS 154
+KCD+C + F L+KH+ HT E C+ CG+ F Q+ L+ H H+ P S
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCTMCPAIFASIGGLRSHMKIVHHGLKT 435
+ YKC C + F+H + L H+ HTG+K C C F RSH+ I HH + T
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQ----RSHL-IGHHRVHT 70
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 153 FSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTG 211
+ C C K F ++SKH R H G+ K YKC C KAF + L H VHTG
Sbjct: 19 YKCDECGKSFSHSSDLSKHRR-THTGE-----KPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTG 403
++ + C CGK F + + H+R H + K YKC C + F + L H VHTG
Sbjct: 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGE---KPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHGLKT 628
+ YKC C K+F++ L H+ HTG+K + C C ++ RSH+ I HH + T
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQ----RSHL-IGHHRVHT 70
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 536 RPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQFVHT 595
R + C C K F D++ H R H G+K YKC C KAF L H VHT
Sbjct: 17 RRYKCDECGKSFSHSSDLSKH-RRTHTGEK-----PYKCDECGKAFIQRSHLIGHHRVHT 70
Query: 596 G 596
G
Sbjct: 71 G 71
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 127 CNLCGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRI 174
C+ CG++F L H +H+ EKP+ C C K F ++ + H R+
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV 68
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 291 FKCDDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHSTQKPFS 349
+KCD+C + F L++H++ H + + C+ CG F ++ +L H H+ P S
Sbjct: 19 YKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 675 FKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
+KCD+C + F L+KH+ H + + C+ CGK F
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF 56
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
KP+KCD+C + F+ + L H +HT
Sbjct: 45 KPYKCDECGKAFIQRSHLIGHHRVHT 70
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 58/145 (40%), Gaps = 35/145 (24%)
Query: 130 CGQTFRQKFRLLNHMISHSTEKPFSC--PICKKQFKRKHEVSKHDRIVHQGKKYNVYKSY 187
CG + + ++L H+ H+ EKPF C C+K F H +++H + H G+K S
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHS-LTHTGEKNFTCDSD 78
Query: 188 KCSL-----------------------------CPKAFTHLAALEDHQYVHTGQKSHMC- 217
C L C KAF L+ HQ+ HT Q + C
Sbjct: 79 GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECP 138
Query: 218 -NLCSARFTCKGALLGHIKVLHEGY 241
C RF+ L H KV H GY
Sbjct: 139 HEGCDKRFSLPSRLKRHEKV-HAGY 162
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 26/142 (18%)
Query: 73 KEESTTKKKVNTHGASKENVA--LNKPFKCDD--CDQCFLTKILLNKH-----------K 117
KEE K + H ++ ++ K F CD CD F TK + KH
Sbjct: 46 KEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVY 105
Query: 118 LLHTEGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSCP--ICKKQFKRKHEVSKHDRIV 175
+ H E CG+ F++ +L H SH+ + P+ CP C K+F + +H++ V
Sbjct: 106 VCHFEN------CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-V 158
Query: 176 HQGKKYNVYKSYKCSLCPKAFT 197
H G Y K CS K +T
Sbjct: 159 HAG--YPCKKDDSCSFVGKTWT 178
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 480 KPFKCDD--CDQRFLTKILLNKH--KLLHFDKDYFSCNY--CGKTFLHKYKLRRHIVIHS 533
K F CD CD RF TK + KH + + + C++ CGK F +L+ H H+
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHT 130
Query: 534 TARPFSCP--VCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFT 582
P+ CP C K+F + H++ VH G K CS K +T
Sbjct: 131 QQLPYECPHEGCDKRFSLPSRLKRHEK-VHAG--YPCKKDDSCSFVGKTWT 178
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 76/202 (37%), Gaps = 51/202 (25%)
Query: 325 CGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLC 384
CG +++ L+ H+ H+ +KPF C +E G C
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPC--------KEEG---------------------C 50
Query: 385 PRVFTHLAALEDHQFVHTGQKTRLCTM--CPAIFASIGGLRSHMKIVHHGLKTQQSCQSS 442
+ FT L L H HTG+K C C F + ++ H H+ C
Sbjct: 51 EKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFE 110
Query: 443 HESKTCSVDEINKENEEGATIRKVKPHEDSKEYMALNKPFKC--DDCDQRFLTKILLNKH 500
+ K K N+ +K H+ S P++C + CD+RF L +H
Sbjct: 111 NCGKA-----FKKHNQ-------LKVHQFSHTQQL---PYECPHEGCDKRFSLPSRLKRH 155
Query: 501 KLLHFD---KDYFSCNYCGKTF 519
+ +H K SC++ GKT+
Sbjct: 156 EKVHAGYPCKKDDSCSFVGKTW 177
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
Query: 289 KPFKCDD--CFQCFLSKILLNQHKKQMHFNK-GGFTCN--SCGLIFSEKKYLRNHMISHS 343
K F CD C F +K + +H + H K + C+ +CG F + L+ H SH+
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHT 130
Query: 344 TQKPFSC--SLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFT 389
Q P+ C C KRF + + H+++H K CS + +T
Sbjct: 131 QQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWT 178
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 73/205 (35%), Gaps = 54/205 (26%)
Query: 515 CGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKC 574
CG + +KL+ H+ H+ +PF C K
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPC--------------------------------KE 47
Query: 575 SLCPKAFTYLGALEDHQFVHTGQKTHLCTM--CPASYATIGGLRSHIKIVHHGLKTQQSC 632
C K FT L L H HTG+K C C + T ++ H H+ C
Sbjct: 48 EGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVC 107
Query: 633 QSSHESKTCSVDEINKENEEGATIRKVKPHEDSKEYMALNKPFKC--DDCDQRFLTKILL 690
+ K K N+ +K H+ S P++C + CD+RF L
Sbjct: 108 HFENCGKA-----FKKHNQ-------LKVHQFSHTQQL---PYECPHEGCDKRFSLPSRL 152
Query: 691 NKHKLLHFD---KDYFSCNYCGKTF 712
+H+ +H K SC++ GKT+
Sbjct: 153 KRHEKVHAGYPCKKDDSCSFVGKTW 177
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINH-QRLH 370
F C C F+ +++L+ H SH+ +KP+ C LC + F R + +I H Q++H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 125 LTCNLCGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQG 178
C +C + F ++ L H SH+ EKP+ C +C + F R+ + +H + +H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 186 SYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEG 240
S+ C +C +AF L+ H HT +K + C LC+ FT + L+ H + +H G
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQG 563
F C C + F + L+RH H+ +P+ C +C + F R+ + H + +H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 348 FSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDH-QFVHTG 403
F C +C + F R+ + H R H + K Y C LC R FT L H Q +H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNE---KPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 153 FSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDH-QYVHTG 211
F C +C + F R+ + +H R + K Y C LC +AFT L H Q +H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYR------SHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 538 FSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDH-QFVHTG 596
F C VC + F R++ + H R H +K Y C LC +AFT L H Q +H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS-HTNEK-----PYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 571 SYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHG 625
S+ C +C +AF L+ H HT +K + C +C ++ L H + +H G
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 378 SYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCTMCPAIFASIGGLRSHMKIVHHG 432
S+ C +C R F L+ H HT +K C +C F L H + +H G
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 121 TEGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGK 179
+E CN CG+T+R L H +H +P SCP C K F+ + EV++H + VHQ K
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLK-VHQNK 58
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGK 564
F CN+CGKT+ L RH H RP SCP C K F+ + +V H + VHQ K
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLK-VHQNK 58
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKV 375
F CN CG + + L H +H +P SC CGK F+ ++ V H ++HQ K
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKPA 60
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 344 TQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVH 401
+++PF C+ CGK ++ +G+ H+R H Y+ C C + F + + H VH
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRRAHLG---YRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIH 532
+PF C+ C + + L++H+ H SC CGK F + ++ RH+ +H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 149 TEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYV 208
+E+PF C C K ++ +S+H R H G Y+ C C K F + + H V
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRR-AHLG-----YRPRSCPECGKCFRDQSEVNRHLKV 54
Query: 209 HTGQKS 214
H + +
Sbjct: 55 HQNKPA 60
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCTMCPAIFASIGGLRSHMKI 428
+ + C+ C + + + L H+ H G + R C C F + H+K+
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKV 54
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 10/79 (12%)
Query: 321 TCN--SCGLIFSEKKYLRNHMISHSTQKPFSCSL--CGKRFKRENGVINHQRLHQTKKVY 376
TC+ CG +++ +L+ H+ +H+ +KP+ C CG +F R + + H R H +
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG---H 63
Query: 377 KSYKCSLCPRVFT---HLA 392
+ ++C C R F+ HLA
Sbjct: 64 RPFQCQKCDRAFSRSDHLA 82
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 13/82 (15%)
Query: 126 TCNL--CGQTFRQKFRLLNHMISHSTEKPFSCPI--CKKQFKRKHEVSKHDRIVHQGKKY 181
TC+ CG+T+ + L H+ +H+ EKP+ C C +F R E+++H R K+
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR------KH 60
Query: 182 NVYKSYKCSLCPKAFT---HLA 200
++ ++C C +AF+ HLA
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLA 82
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 487 CDQRFLTKILLNKHKLLHFDKDYFSCNY--CGKTFLHKYKLRRHIVIHSTARPFSCPVCK 544
C + + L H H + + C++ CG F +L RH H+ RPF C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 545 KQFKRKQDVAGH 556
+ F R +A H
Sbjct: 73 RAFSRSDHLALH 84
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 511 SCNY--CGKTFLHKYKLRRHIVIHSTARPFSCPV--CKKQFKRKQDVAGHDRVVHQGKKL 566
+C+Y CGKT+ L+ H+ H+ +P+ C C +F R ++ H R K
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR------KH 60
Query: 567 IVYKSYKCSLCPKAFT 582
++ ++C C +AF+
Sbjct: 61 TGHRPFQCQKCDRAFS 76
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 323 NSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLH 370
+ CG F+ L H H+ +PF C C + F R + + H + H
Sbjct: 41 DGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 124 HLTCNLCGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKH 171
H + CG F + L H H+ +PF C C + F R ++ H
Sbjct: 37 HCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALH 84
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 10/79 (12%)
Query: 321 TCN--SCGLIFSEKKYLRNHMISHSTQKPFSCSL--CGKRFKRENGVINHQRLHQTKKVY 376
TC+ CG +++ +L+ H+ +H+ +KP+ C CG +F R + + H R H +
Sbjct: 8 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTG---H 64
Query: 377 KSYKCSLCPRVFT---HLA 392
+ ++C C R F+ HLA
Sbjct: 65 RPFQCQKCDRAFSRSDHLA 83
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 13/82 (15%)
Query: 126 TCNL--CGQTFRQKFRLLNHMISHSTEKPFSCPI--CKKQFKRKHEVSKHDRIVHQGKKY 181
TC+ CG+T+ + L H+ +H+ EKP+ C C +F R E+++H R K+
Sbjct: 8 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR------KH 61
Query: 182 NVYKSYKCSLCPKAFT---HLA 200
++ ++C C +AF+ HLA
Sbjct: 62 TGHRPFQCQKCDRAFSRSDHLA 83
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 487 CDQRFLTKILLNKHKLLHFDKDYFSCNY--CGKTFLHKYKLRRHIVIHSTARPFSCPVCK 544
C + + L H H + + C++ CG F +L RH H+ RPF C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 545 KQFKRKQDVAGH 556
+ F R +A H
Sbjct: 74 RAFSRSDHLALH 85
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 511 SCNY--CGKTFLHKYKLRRHIVIHSTARPFSCPV--CKKQFKRKQDVAGHDRVVHQGKKL 566
+C+Y CGKT+ L+ H+ H+ +P+ C C +F R ++ H R K
Sbjct: 8 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR------KH 61
Query: 567 IVYKSYKCSLCPKAFT 582
++ ++C C +AF+
Sbjct: 62 TGHRPFQCQKCDRAFS 77
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 323 NSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLH 370
+ CG F+ L H H+ +PF C C + F R + + H + H
Sbjct: 42 DGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 124 HLTCNLCGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKH 171
H + CG F + L H H+ +PF C C + F R ++ H
Sbjct: 38 HCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALH 85
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 127 CNLCGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVH 176
C +C + F + L H+ +H+ EKPF+C IC ++F R E +H I H
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQ 367
F C C FS +L H+ +H+ +KPF+C +CG++F R + H+
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR 51
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVH 561
F C C + F L HI H+ +PF+C +C ++F R + H + H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCNLCSARFT 225
K ++C +C + F+ L H HTG+K C++C +F
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 42
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCTMCPAIFASIGGLRSHMKIVH 430
K ++C +C R F+ L H HTG+K C +C FA + H I H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 346 KPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFT 389
KPF C +C + F R + + H R H + K + C +C R F
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGE---KPFACDICGRKFA 42
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVH 623
K ++C +C + F+ L H HTG+K C +C +A + H I H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRH 528
KPF+C C + F L H H + F+C+ CG+ F + +RH
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 151 KPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFT 197
KPF C IC + F R ++ H R H G+ K + C +C + F
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIR-THTGE-----KPFACDICGRKFA 42
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
KPF+C C + F L H H + F+C+ CG+ F
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 536 RPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFT 582
+PF C +C + F R + H R H G+ K + C +C + F
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIR-THTGE-----KPFACDICGRKFA 42
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 86 GASKENVALNKPFKCDDCDQCFLTKILLNKHKLLHT 121
G+S + KPF+CD CD+ F + LN H+++HT
Sbjct: 1 GSSGSSGTAEKPFRCDTCDKSFRQRSALNSHRMIHT 36
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLH 504
KPF+CD CD+ F + LN H+++H
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIH 35
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLH 697
KPF+CD CD+ F + LN H+++H
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIH 35
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 178 GKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
G K ++C C K+F +AL H+ +HTG+K
Sbjct: 4 GSSGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEK 39
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 146 SHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKK 180
S + EKPF C C K F+++ ++ H R++H G+K
Sbjct: 6 SGTAEKPFRCDTCDKSFRQRSALNSH-RMIHTGEK 39
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 563 GKKLIVYKSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
G K ++C C K+F AL H+ +HTG+K
Sbjct: 4 GSSGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEK 39
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K ++C C + F +AL H+ +HTG+K
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEK 39
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 40/111 (36%), Gaps = 34/111 (30%)
Query: 130 CGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKC 189
CG + + ++L H+ H+ EKPF C K
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPC--------------------------------KE 38
Query: 190 SLCPKAFTHLAALEDHQYVHTGQKSHMCNL--CSARFTCKGALLGHIKVLH 238
C K FT L L H HTG+K+ C+ C RFT K + H H
Sbjct: 39 EGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH 89
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 39/108 (36%), Gaps = 31/108 (28%)
Query: 325 CGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLC 384
CG +++ L+ H+ H+ +KPF C +E G C
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPC--------KEEG---------------------C 41
Query: 385 PRVFTHLAALEDHQFVHTGQKTRLCTM--CPAIFASIGGLRSHMKIVH 430
+ FT L L H HTG+K C C F + ++ H H
Sbjct: 42 EKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH 89
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 36/111 (32%), Gaps = 34/111 (30%)
Query: 515 CGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKC 574
CG + +KL+ H+ H+ +PF C K
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPC--------------------------------KE 38
Query: 575 SLCPKAFTYLGALEDHQFVHTGQKTHLCTM--CPASYATIGGLRSHIKIVH 623
C K FT L L H HTG+K C C + T ++ H H
Sbjct: 39 EGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH 89
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLHFDKDY----FSCNYCGKTFLHKYKLRRHI 529
KP+ C CD+ F K LL+ H + D ++ F C+ CGKTF + + RH
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 289 KPFKCDDCFQCFLSKILLNQHKKQMH---FNKGGFTCNSCGLIFSEKKYLRNH 338
KP+ C C + F K LL+ H K+ H F F C+ CG F+ + + H
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLHFDKDY----FSCNYCGKTF 712
KP+ C CD+ F K LL+ H + D ++ F C+ CGKTF
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTF 57
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 341 SHSTQKPFSCSLCGKRFKRENGVINH-QRLHQTKKVYKSYKCSLCPRVFTHLAALEDH 397
+H+ +KP++CS C K F+++ + H +R H V ++ CS C + FT + H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 146 SHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDH 205
+H+ EKP++C C K F++K + H + H V ++ CS C K FT + H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHD--PNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 83 NTHGASKENVALNKPFKCDDCDQCFLTKILLNKH-KLLH----TEGHLTCNLCGQTFRQK 137
+ G+S KP+ C CD+ F K LL+ H K H C+ CG+TF ++
Sbjct: 1 GSSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRR 60
Query: 138 FRLLNH 143
+ H
Sbjct: 61 NTMARH 66
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 531 IHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDH 590
H+ +P++C C K F++KQ + H + H V ++ CS C K FT + H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHD--PNFVPAAFVCSKCGKTFTRRNTMARH 66
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 140 LLNHMISHSTEKPFSCPI--CKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFT 197
LLN+++ +P++CP+ C ++F R E+++H RI H G+K ++C +C + F+
Sbjct: 9 LLNYVVP--KMRPYACPVESCDRRFSRSDELTRHIRI-HTGQK-----PFQCRICMRNFS 60
Query: 198 HLAALEDHQYVHT 210
L H HT
Sbjct: 61 RSDHLTTHIRTHT 73
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 324 SCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLH 370
SC FS L H+ H+ QKPF C +C + F R + + H R H
Sbjct: 26 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 515 CGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRV 559
C + F +L RHI IH+ +PF C +C + F R + H R
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 536 RPFSCPV--CKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQFV 593
RP++CPV C ++F R ++ H R+ H G+K ++C +C + F+ L H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRI-HTGQK-----PFQCRICMRNFSRSDHLTTHIRT 71
Query: 594 HT 595
HT
Sbjct: 72 HT 73
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 346 KPFSCSL--CGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHT 402
+P++C + C +RF R + + H R+H + K ++C +C R F+ L H HT
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQ---KPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 185 KSYKCSL--CPKAFTHLAALEDHQYVHTGQKSHMCNLCSARFTCKGALLGHIKV 236
+ Y C + C + F+ L H +HTGQK C +C F+ L HI+
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 130 CGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDR 173
C + F + L H+ H+ +KPF C IC + F R ++ H R
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 480 KPFKC--DDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHS 533
+P+ C + CD+RF L +H +H + F C C + F L HI H+
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 570 KSYKCSL--CPKAFTYLGALEDHQFVHTGQKTHLCTMCPASYATIGGLRSHIK 620
+ Y C + C + F+ L H +HTGQK C +C +++ L +HI+
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 377 KSYKCSL--CPRVFTHLAALEDHQFVHTGQKTRLCTMCPAIFASIGGLRSHMK 427
+ Y C + C R F+ L H +HTGQK C +C F+ L +H++
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 673 KPFKC--DDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
+P+ C + CD+RF L +H +H + F C C + F
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 325 CGLIFSEKKYLRNHMISHSTQKPFSCSL--CGKRFKRENGVINHQRLH 370
CG + + +L+ H +H+ +KPFSCS C +RF R + + H+R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 130 CGQTFRQKFRLLNHMISHSTEKPFSCPI--CKKQFKRKHEVSKHDRI 174
CG+T+ + L H +H+ EKPFSC C+++F R E+S+H R
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 515 CGKTFLHKYKLRRHIVIHSTARPFSCPV--CKKQFKRKQDVAGHDRV 559
CGKT+ L+ H H+ +PFSC C+++F R +++ H R
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 293 CD--DCFQCFLSKILLNQHKKQMHFNKGGFTCN--SCGLIFSEKKYLRNHMISHSTQKPF 348
CD C + F ++ LN HKK H ++ F+C +CG F+ KK+L+ HM HS + +
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDY 69
Query: 349 SCSLCG 354
C G
Sbjct: 70 ICEFSG 75
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 319 GFTCN--SCGLIFSEKKYLRNHM-ISHSTQKPFSCS--LCGKRFKRENGVINHQRLHQTK 373
G C+ CG IFS ++YL +H H QK FSC CGK F + + H +LH
Sbjct: 7 GMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDT 66
Query: 374 KVY 376
+ Y
Sbjct: 67 RDY 69
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 484 CD--DCDQRFLTKILLNKHK-LLHFDKDYFSCN--YCGKTFLHKYKLRRHIVIHSTARPF 538
CD C + F + LN HK H + FSC CGK+F K L+ H+ +HS R +
Sbjct: 10 CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDY 69
Query: 539 SC 540
C
Sbjct: 70 IC 71
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 538 FSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQFVHTGQ 597
+ C VCK+ + + H + KK Y C C K F H+ HTG+
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKK------YPCRYCEKVFPLAEYRTKHEIHHTGE 76
Query: 598 KTHLCTMCPASYATIGGLRSHIKIVH 623
+ + C C S+ + SHIK VH
Sbjct: 77 RRYQCLACGKSFINYQFMSSHIKSVH 102
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 465 KVKPHEDSKEYMALNKPFK-CDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF-LHK 522
KVK H+D E + + + C C + ++ L +H +H + + C YC K F L +
Sbjct: 6 KVK-HDDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAE 64
Query: 523 YKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVH 561
Y+ +H + H+ R + C C K F Q ++ H + VH
Sbjct: 65 YRT-KHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVH 102
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 348 FSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTR 407
+ C +C + + + H +H +K Y C C +VF H+ HTG++
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEK---KYPCRYCEKVFPLAEYRTKHEIHHTGERRY 79
Query: 408 LCTMCPAIFASIGGLRSHMKIVH 430
C C F + + SH+K VH
Sbjct: 80 QCLACGKSFINYQFMSSHIKSVH 102
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 153 FSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQ 212
+ C +CK+ + + +H I KKY C C K F H+ HTG+
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKY------PCRYCEKVFPLAEYRTKHEIHHTGE 76
Query: 213 KSHMCNLCSARFTCKGALLGHIKVLH 238
+ + C C F + HIK +H
Sbjct: 77 RRYQCLACGKSFINYQFMSSHIKSVH 102
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 15/98 (15%)
Query: 274 KVKPHEDSKEYMALNKPFKCDDCFQCFLSKILLNQHKKQMHFN----KGGFTCNSCGLIF 329
KVK H+D E + + + C C S + L ++ HFN + + C C +F
Sbjct: 6 KVK-HDDHYELIVDGRVYYI--CIVCKRSYVCLTSLRR--HFNIHSWEKKYPCRYCEKVF 60
Query: 330 SEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQ 367
+Y H I H+ ++ + C CGK F IN+Q
Sbjct: 61 PLAEYRTKHEIHHTGERRYQCLACGKSF------INYQ 92
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 8/118 (6%)
Query: 98 FKCDDCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSCP 156
+ C C + ++ L +H +H+ E C C + F H I H+ E+ + C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 157 ICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKS 214
C K F +S H + VH K Y+ C +L+ QY + +S
Sbjct: 83 ACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPC-------RSLQIRQYAYLSDRS 133
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K Y+C +C KAF+H A+L HQ VH+G+K
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEK 39
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K Y+C +C + F+H A+L HQ VH+G+K
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEK 39
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K Y+C +C KAF++ +L HQ VH+G+K
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEK 39
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 150 EKPFSCPICKKQFKRKHEVSKHDRIVHQGKK 180
EKP+ C +C+K F +++H R VH G+K
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQR-VHSGEK 39
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KP+ C +C K F + HQR+H +K
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEK 39
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 487 CDQRFLTKIL-----LNKHKLLHFDKDYFSCNY--CGKTFLHKYKLRRHIVIHSTARPFS 539
CD TK+ L H H + + C + C F +L RH H+ A+PF
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 540 CPVCKKQFKRKQDVAGH 556
C VC + F R +A H
Sbjct: 78 CGVCNRSFSRSDHLALH 94
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 321 TCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQ 371
T C F+ L H H+ KPF C +C + F R + + H + HQ
Sbjct: 49 TWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Query: 86 GASKENVALNKPFKCD--DCDQCFLTKILLNKHKLLHT-EGHLTCNL--CGQTFRQKFRL 140
G+S ++ + CD C + + L H HT E C C F + L
Sbjct: 4 GSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDEL 63
Query: 141 LNHMISHSTEKPFSCPICKKQFKRKHEVSKH 171
H H+ KPF C +C + F R ++ H
Sbjct: 64 TRHYRKHTGAKPFQCGVCNRSFSRSDHLALH 94
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 33/106 (31%)
Query: 324 SCGLIFSEKKYLRNHMISHSTQKPFSCSL--CGKRFKRENGVINHQRLHQTKKVYKSYKC 381
C ++++ +L+ H+ +H+ +KP+ C+ C RF R + + H R
Sbjct: 22 GCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR------------- 68
Query: 382 SLCPRVFTHLAALEDHQFVHTGQKTRLCTMCPAIFASIGGLRSHMK 427
HTG K C +C F+ L HMK
Sbjct: 69 ------------------KHTGAKPFQCGVCNRSFSRSDHLALHMK 96
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 480 KPFKC--DDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIH 532
KP+KC + CD RF L +H H F C C ++F L H+ H
Sbjct: 44 KPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 673 KPFKC--DDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
KP+KC + CD RF L +H H F C C ++F
Sbjct: 44 KPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSF 85
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 156 PICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSL--CPKAFTHLAALEDHQYVHTGQK 213
P C K + + + H R H G+K YKC+ C F L H HTG K
Sbjct: 21 PGCTKVYTKSSHLKAHLR-THTGEK-----PYKCTWEGCDWRFARSDELTRHYRKHTGAK 74
Query: 214 SHMCNLCSARFTCKGALLGHIK 235
C +C+ F+ L H+K
Sbjct: 75 PFQCGVCNRSFSRSDHLALHMK 96
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 541 PVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSL--CPKAFTYLGALEDHQFVHTGQK 598
P C K + + + H R H G+K YKC+ C F L H HTG K
Sbjct: 21 PGCTKVYTKSSHLKAHLRT-HTGEK-----PYKCTWEGCDWRFARSDELTRHYRKHTGAK 74
Query: 599 THLCTMCPASYATIGGLRSHIK 620
C +C S++ L H+K
Sbjct: 75 PFQCGVCNRSFSRSDHLALHMK 96
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKS 378
QKPF C+ CGK F+ + ++ HQR+H +K S
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKT 599
K ++C+ C K+F G L HQ +HTG+K+
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEKS 40
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKS 214
K ++C+ C K+F L HQ +HTG+KS
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEKS 40
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K Y+CS+C KAF+H +L HQ +H+G+K
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KP+ CS+CGK F + HQR+H KK
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K Y+CS+C + F+H +L HQ +H+G+K
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K Y+CS+C KAF++ +L HQ +H+G+K
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKK 39
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 150 EKPFSCPICKKQFKRKHEVSKHDRIVHQGKK 180
EKP+ C +C K F + +S H RI H GKK
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRI-HSGKK 39
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 536 RPFSCPVCKKQFKRKQDVAGHDRVVHQGKK 565
+P+ C VC K F +Q ++ H R +H GKK
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQR-IHSGKK 39
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARP 537
+ C+ CGK F H+ L H IHS +P
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 121 TEGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFS 154
T + C +CG+ FR + L H +SHS EKP+S
Sbjct: 9 TRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYS 42
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFS 349
C CG IF + +L H +SHS +KP+S
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKPYS 42
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFS 539
+C CGK F Y L RH + HS +P+S
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKPYS 42
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K Y C C KAF H + L++HQ +HTG+K
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEK 39
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K Y C C + F H + L++HQ +HTG+K
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEK 39
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K Y C C KAF + L++HQ +HTG+K
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEK 39
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARP 537
++C CGK F+H +L+ H IH+ +P
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KP++C CGK F ++ + HQR+H +K
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEK 39
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 324 SCGLIFSEKKYLRNHMISHSTQKPFSCS--LCGKRFKRENGVINHQRLHQTKKVYKSYKC 381
+CG F + L+ H SH+ Q P+ C C KRF + + H+++H K C
Sbjct: 8 NCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSC 67
Query: 382 SLCPRVFT 389
S + +T
Sbjct: 68 SFVGKTWT 75
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 130 CGQTFRQKFRLLNHMISHSTEKPFSCP--ICKKQFKRKHEVSKHDRIVHQGKKYNVYKSY 187
CG+ F++ +L H SH+ + P+ CP C K+F + +H++ VH G Y K
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAG--YPCKKDD 65
Query: 188 KCSLCPKAFT 197
CS K +T
Sbjct: 66 SCSFVGKTWT 75
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 127 CNLCGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKH 171
C+ CG+ FR + L H+ +H+ EKP+ C C+ +K + H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 512 CNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGH 556
C+YCGK F Y L H+ H+ +P+ C C+ +K + H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 322 CNSCGLIFSEKKYLRNHMISHSTQKPFSCSLC 353
C+ CG F YL H+ +H+ +KP+ C C
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFC 38
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 571 SYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVH 623
S +CS C K F L H HTG+K + C C + A LR H++ H
Sbjct: 4 SRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 23/53 (43%)
Query: 378 SYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCTMCPAIFASIGGLRSHMKIVH 430
S +CS C + F L H HTG+K C C A LR H++ H
Sbjct: 4 SRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 35.8 bits (81), Expect = 0.083, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 148 STEKPFSCPICKKQFKRKHEVSKHDR 173
S EKP+SCP+C +FKRK +S H R
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVR 31
Score = 33.9 bits (76), Expect = 0.35, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 343 STQKPFSCSLCGKRFKRENGVINHQRLH 370
S +KP+SC +CG RFKR++ + H R H
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 533 STARPFSCPVCKKQFKRKQDVAGHDR 558
S +P+SCPVC +FKRK ++ H R
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVR 31
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 343 STQKPFSCSLCGKRFKRENGVINHQRLH 370
S + P+ CS CGK F R++ +I+HQR H
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTH 33
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 324 SCGLIFSEKKYLRNHMISHSTQKPFSCS--LCGKRFKRENGVINHQRLHQTKKVYKSYKC 381
+CG F + L+ H SH+ Q P+ C C KRF + + H+++H K C
Sbjct: 8 NCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSC 67
Query: 382 SLCPRVFT 389
S + +T
Sbjct: 68 SFVGKTWT 75
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 130 CGQTFRQKFRLLNHMISHSTEKPFSCP--ICKKQFKRKHEVSKHDRIVHQGKKYNVYKSY 187
CG+ F++ +L H SH+ + P+ CP C K+F + +H++ VH G Y K
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK-VHAG--YPCKKDD 65
Query: 188 KCSLCPKAFT 197
CS K +T
Sbjct: 66 SCSFVGKTWT 75
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K YKC+ C KAF+ + L HQ +HTG+K
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K YKC+ C KAF+ L HQ +HTG+K
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K YKC+ C + F+ + L HQ +HTG+K
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARP 537
+ CN CGK F KL RH IH+ +P
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KP+ C+ CGK F + + + HQR+H +K
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 127 CNLCGQTFRQKFRLLNHMISHSTEKP 152
CN CG+ F Q +L H H+ EKP
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIH--STARPFSCPVCKKQFKRKQDVAGHDRVVHQ 562
+ C C + + H RH V + + CP C K+F RK ++ H +++H+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 186 SYKCSLCPKAFTHLAALEDHQYVHTGQ---KSHMCNLCSARFTCKGALLGHIKVLHE 239
+Y+C +C + +TH++ H YV + + K + C C FT K + H+K++H+
Sbjct: 10 TYRCKVCSRVYTHISNFCRH-YVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 372 TKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRL--CTMCPAIFASIGGLRSHMKIV 429
TK+ +Y+C +C RV+TH++ H + ++ C C F + +H+KI+
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Query: 430 H 430
H
Sbjct: 64 H 64
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 127 CNLCGQTFRQKFRLLNHMISH--STEKPFSCPICKKQFKRKHEVSKHDRIVHQ 177
C +C + + H ++ K + CP C K+F RK ++ H +I+H+
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K YKC+ C +VF H + L HQ +HTG+K
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEK 39
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K YKC+ C K F H + L HQ +HTG+K
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEK 39
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARP 537
+ CN CGK F H L RH IH+ +P
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K YKC+ C K F + L HQ +HTG+K
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEK 39
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KP+ C+ CGK F+ + + HQR+H +K
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEK 39
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
KP+KC++C + F L++H+ +HT
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHT 36
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKP 347
+ CN CG +F YL H H+ +KP
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K Y+CS+C K+FT + L HQ +HTG+K
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEK 39
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K Y+CS+C K+FT L HQ +HTG+K
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEK 39
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K Y+CS+C + FT + L HQ +HTG+K
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEK 39
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KP+ CS+CGK F +++ + HQ++H +K
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEK 39
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K Y+C C KAF A L HQ +HTG+K
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K Y+C C + F A L HQ +HTG+K
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K Y+C C KAF L HQ +HTG+K
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KP+ C CGK F ++ + HQR+H +K
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
KP++C +C + F K L +H+ +HT
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHT 36
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K Y+C +C KAFT A L HQ HTG+K
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K Y+C +C + FT A L HQ HTG+K
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEK 39
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K Y+C +C KAFT L HQ HTG+K
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEK 39
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 343 STQKPFSCSLCGKRFKRENGVINHQRLHQTKKV 375
S +KP+ C+ CGK F ++ +I HQR+H +K+
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEKL 38
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARP 537
F CN CGKTF H L +H +IH+ P
Sbjct: 13 FKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 86 GASKENVALNKPFKCDDCDQCFLTKILLNKHKLLHT 121
G+S + PFKC++C + F L+KH+L+H
Sbjct: 1 GSSGSSGTKEHPFKCNECGKTFSHSAHLSKHQLIHA 36
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 481 PFKCDDCDQRFLTKILLNKHKLLHFDKD 508
PFKC++C + F L+KH+L+H ++
Sbjct: 12 PFKCNECGKTFSHSAHLSKHQLIHAGEN 39
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 674 PFKCDDCDQRFLTKILLNKHKLLHFDKD 701
PFKC++C + F L+KH+L+H ++
Sbjct: 12 PFKCNECGKTFSHSAHLSKHQLIHAGEN 39
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 379 YKCSLCPRVFTHLAALEDHQFVHTGQ 404
+KC+ C + F+H A L HQ +H G+
Sbjct: 13 FKCNECGKTFSHSAHLSKHQLIHAGE 38
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 187 YKCSLCPKAFTHLAALEDHQYVHTGQ 212
+KC+ C K F+H A L HQ +H G+
Sbjct: 13 FKCNECGKTFSHSAHLSKHQLIHAGE 38
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K Y+C+ C KAF+ + L HQ VHTG+K
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEK 39
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K Y+C+ C KAF+ L HQ VHTG+K
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEK 39
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K Y+C+ C + F+ + L HQ VHTG+K
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEK 39
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARP 537
+ CN CGK F KL RH +H+ +P
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 346 KPFSCSLCGKRFKRENGVINHQRLHQTKK 374
KP+ C+ CGK F + + + HQR+H +K
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEK 39
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 127 CNLCGQTFRQKFRLLNHMISHSTEKP 152
CN CG+ F Q +L H H+ EKP
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K YKC +C K+F Y +L HQ +HTG+K
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEK 39
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K YKC +C K+F + ++L HQ +HTG+K
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEK 39
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K YKC +C + F + ++L HQ +HTG+K
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEK 39
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KP+ C +C K F+ + + HQR+H +K
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEK 39
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
KPFKCD C + F + LN+H ++HT
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHT 36
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARP 537
F C+ CGK+F + +L RH ++H+ +P
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLH 504
KPFKCD C + F + LN+H ++H
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLH 697
KPFKCD C + F + LN+H ++H
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 122 EGHLTCNLCGQTFRQKFRLLNHMISHSTEKP 152
E C++CG++F + RL H + H+ EKP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K YKCS C KAFT + L HQ HTG++
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K YKCS C KAFT L HQ HTG++
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KP+ CS CGK F R++G+ HQ+ H ++
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K YKCS C + FT + L HQ HTG++
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
KP+KC DC + F K L+ H+ HT
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHT 36
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 86 GASKENVALNKPFKCDDCDQCFLTKILLNKHKLLHT 121
G+S + KP+KC +C + F T+ L H+++HT
Sbjct: 1 GSSGSSGTKEKPYKCYECGKAFRTRSNLTTHQVIHT 36
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K YKC C KAF + L HQ +HTG+K
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K YKC C KAF L HQ +HTG+K
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K YKC C + F + L HQ +HTG+K
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLH 504
KP+KC +C + F T+ L H+++H
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIH 35
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLH 697
KP+KC +C + F T+ L H+++H
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIH 35
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 341 SHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
S + +KP+ C CGK F+ + + HQ +H +K
Sbjct: 6 SGTKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K YKC +C K F+ + L+ HQ VHTG+K
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEK 39
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K YKC +C + F+ + L+ HQ VHTG+K
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEK 39
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K YKC +C K F+ L+ HQ VHTG+K
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEK 39
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K Y+C+ C KAFT + L HQ +HTG+K
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEK 39
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K Y+C+ C KAFT L HQ +HTG+K
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEK 39
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K Y+C+ C + FT + L HQ +HTG+K
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEK 39
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KP+ C+ CGK F + + HQ++H +K
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEK 39
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K YKC+ C +VF+ + L HQ +HTG+K
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEK 39
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K YKC+ C K F+ + L HQ +HTG+K
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEK 39
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K YKC+ C K F+ L HQ +HTG+K
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEK 39
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K YKC+ C +VFT + L +HQ +HTG K
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K YKC+ C K FT + L +HQ +HTG K
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLH 370
+KP+ C+ CGK F + + + NHQR+H
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K YKC+ C K FT L +HQ +HTG K
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
+ CN CG +F++ +L NH H+ KP S
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 341 SHSTQKPFSCSLCGKRFKRENGVINHQRLH 370
S + +KP+ CS CGK F R + +I HQR H
Sbjct: 6 SGTREKPYECSECGKAFIRNSQLIVHQRTH 35
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 127 CNLCGQTFRQKFRLLNHMISHSTEKP 152
C+ CG++F +RL H I+H+ EKP
Sbjct: 15 CSECGKSFSGSYRLTQHWITHTREKP 40
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARP 537
+ C+ CGK+F Y+L +H + H+ +P
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K Y C+ C KAF+ +L HQ +HTG+K
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEK 39
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K Y C+ C KAF+ ++L HQ +HTG+K
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEK 39
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K Y C+ C + F+ ++L HQ +HTG+K
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEK 39
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 17/28 (60%)
Query: 125 LTCNLCGQTFRQKFRLLNHMISHSTEKP 152
L CN CG+TFRQ L H HS EKP
Sbjct: 11 LVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 343 STQKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
S +KP C+ CGK F++ + + HQR+H +K
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEK 37
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 506 DKDYFSCNYCGKTFLHKYKLRRHIVIHSTARP 537
K CN CGKTF L +H IHS +P
Sbjct: 7 GKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQR 368
+ C CG+ + L+ H+ +H+ +P+ C+ C FK + + H +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKK 565
+ C CG L++HI H+ RP+ C C FK K ++ H + KK
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 127 CNLCGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKH 171
C CG ++ L H+ +H+ +P+ C C FK K ++KH
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KPF C CGKRF + + + +HQR+H +K
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEK 39
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K ++C C K FT + L HQ VHTG+K
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEK 39
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K ++C C K FT L HQ VHTG+K
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEK 39
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K ++C C + FT + L HQ VHTG+K
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEK 39
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KPF C CGKRF + + + +HQR+H +K
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEK 39
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K +KC C K FT + L HQ VHTG+K
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEK 39
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K +KC C + FT + L HQ VHTG+K
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEK 39
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K +KC C K FT L HQ VHTG+K
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEK 39
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLH 504
KPFKC++C +RF L+ H+ +H
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLH 697
KPFKC++C +RF L+ H+ +H
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVH 35
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
+ Y C++C KAFT + L HQ +HTG+K
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEK 39
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
++P+ C++CGK F + +I HQ++H +K
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEK 39
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
+ Y C++C KAFT L HQ +HTG+K
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEK 39
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+ Y C++C + FT + L HQ +HTG+K
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEK 39
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K Y+C+ C KAF+ +L HQ +HTG+K
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKK 39
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K Y+C+ C KAF+ ++L HQ +HTG+K
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKK 39
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KP+ C+ CGK F + + HQ +H KK
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKK 39
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K Y+C+ C + F+ ++L HQ +HTG+K
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKK 39
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K YKC+ C +VFT + L +H +HTG+K
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEK 39
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K YKC+ C K FT + L +H +HTG+K
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEK 39
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
+ CN CG +F++ +L NH H+ +KP S
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KP+ C+ CGK F + + + NH R+H +K
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEK 39
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K YKC+ C K FT L +H +HTG+K
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEK 39
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 127 CNLCGQTFRQKFRLLNHMISHSTEKP 152
CN CG+ F Q L NH H+ EKP
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKP 40
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 343 STQKPFSCSLCGKRFKRENGVINHQRLH 370
S +KP+ C+ CGK F R++ I H+R+H
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIH 33
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KPF C+ CGK F + + HQR+H +K
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEK 39
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K ++C+ C K+F+ + L HQ +HTG+K
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEK 39
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K ++C+ C K+F+ L HQ +HTG+K
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEK 39
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKP 347
+ C+ CG FS K YL HM +HS +KP
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KP+ CS CGK F ++ +I H R H +K
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEK 39
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 127 CNLCGQTFRQKFRLLNHMISHSTEKP 152
C+ CG+ F K L+ HM +HS EKP
Sbjct: 15 CSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 19/46 (41%)
Query: 484 CDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHI 529
C C + F +K +H L F C YC TF L RHI
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 566 LIVYKSYKCSLCP---KAFTYLGALEDHQFVHTGQKTHLCTMCPASYATIGGLRSHIKIV 622
L + S +C LCP ++F GA E H + + C CPA++ + GL HI
Sbjct: 20 LGLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKC 79
Query: 623 H 623
H
Sbjct: 80 H 80
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Query: 155 CPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDH 205
CP+C + F K +H R++H + + C CP F L H
Sbjct: 31 CPVCGESFASKGAQERHLRLLH------AAQVFPCKYCPATFYSSPGLTRH 75
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 215 HMCNLCSARFTCKGALLGHIKVLHEGYKRPQESCQSSHESKTCSVDEINK 264
H+C +C F KGA H+++LH P + C ++ S INK
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINK 78
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K YKC+ C +VFT + L H+ +HTG+K
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K YKC+ C K FT + L H+ +HTG+K
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K YKC+ C K FT L H+ +HTG+K
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 507 KDYFSCNYCGKTFLHKYKLRRHIVIHSTARP 537
K + CN CGK F L RH IH+ +P
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
KP+KC++C + F L +H+ +HT
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHT 36
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K YKC+ C +VFT + L H+ +HTG+K
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K YKC+ C K FT + L H+ +HTG+K
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K YKC+ C K FT L H+ +HTG+K
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARP 537
+ CN CGK F L RH IH+ +P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
KP+KC++C + F L +H+ +HT
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHT 36
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K YKCS C K+FT+ L HQ HTG++
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K YKCS C K+FT + L HQ HTG++
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K YKCS C + FT + L HQ HTG++
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K YKC+ C KAF + L HQ +HTG+K
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEK 39
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K YKC+ C KAF L HQ +HTG+K
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEK 39
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K YKC+ C + F + L HQ +HTG+K
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEK 39
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 127 CNLCGQTFRQKFRLLNHMISHSTEKP 152
CN CG+ FR L H + H+ EKP
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KP+ C+ CGK F+ + + HQ +H +K
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEK 39
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
KP+KC++C + F L H+++HT
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHT 36
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KP+ C CGK F + +I HQR+H +K
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEK 39
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K Y+C C KAF+ L HQ VHTG+K
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEK 39
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K Y+C C KAF+ L HQ VHTG+K
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEK 39
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K Y+C C + F+ L HQ VHTG+K
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEK 39
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 127 CNLCGQTFRQKFRLLNHMISHSTEKP 152
C+ CG+ FR K L+ HM +H+ EKP
Sbjct: 13 CSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 343 STQKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
S KP+ CS CGK F+ ++ +I H R H +K
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEK 37
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKP 347
+ C+ CG F K YL HM +H+ +KP
Sbjct: 11 YGCSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K +KC+ C K FT ++L HQ +HTG+K
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEK 39
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K +KC+ C + FT ++L HQ +HTG+K
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEK 39
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K +KC+ C K FT +L HQ +HTG+K
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEK 39
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
KPF C DC + F I LN+H+ +HT
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHT 36
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KPF C CGK F G+ H+R+H +K
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEK 39
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLH 504
KPF C DC + F I LN+H+ +H
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLH 697
KPF C DC + F I LN+H+ +H
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 289 KPFKCDDCFQCFLSKILLNQHKK 311
KPF C DC + F I LNQH++
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRR 33
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 319 GFTCNSCGLIFSEKKYLRNHMISHSTQKP---FSCSLCGKRFKRENGVINHQ 367
G C CG +K L H H+ F C CGKRF++ + V H+
Sbjct: 7 GLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 125 LTCNLCGQTFRQKFRLLNHMISHSTEKP---FSCPICKKQFKRKHEVSKHDRIVH 176
L C +CG T RQK L H H+ F C C K+F++ V+ H H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 127 CNLCGQTFRQKFRLLNHMISHSTEKP 152
CN CG+ FR + L H +HS EKP
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKP 40
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K YKC+ C KAF ++L HQ H+G+K
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEK 39
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K YKC+ C KAF +L HQ H+G+K
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEK 39
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K YKC+ C + F ++L HQ H+G+K
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEK 39
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 506 DKDYFSCNYCGKTFLHKYKLRRHIVIHSTARP 537
+K Y CN CGK+F+ K L RH IH+ +P
Sbjct: 10 EKPYI-CNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
KP+ C++C + F+ K LN+H+ +HT
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHT 36
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLH 504
KP+ C++C + F+ K LN+H+ +H
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIH 35
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLH 697
KP+ C++C + F+ K LN+H+ +H
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIH 35
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K ++C+ C KAFT + L HQ +HTG+K
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEK 39
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K ++C+ C KAFT L HQ +HTG+K
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEK 39
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K ++C+ C + FT + L HQ +HTG+K
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEK 39
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
KS+ C C K F Y+ AL HQ VH G+K
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVHMGEK 39
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
KS+ C C K F +++AL HQ VH G+K
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVHMGEK 39
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
KS+ C C + F +++AL HQ VH G+K
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVHMGEK 39
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KP+ C CGK F ++ HQR+H +K
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEK 39
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K Y C C KAF A L HQ +HTG+K
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEK 39
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K Y C C KAF L HQ +HTG+K
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEK 39
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 346 KPFSCSLCGKRFKRENGVINHQRLH 370
+P+SCS+CGKRF ++ + H R+H
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVH 26
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 151 KPFSCPICKKQFKRKHEVSKHDRIVHQG 178
+P+SC +C K+F KH++ H R VH G
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYR-VHTG 28
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 348 FSCSLCGKRFKRENGVINHQRLHQTKK 374
+ CS CGK F R++ +I HQR+H +K
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEK 39
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 187 YKCSLCPKAFTHLAALEDHQYVHTGQK 213
Y+CS C KAF + L HQ +HTG+K
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEK 39
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 572 YKCSLCPKAFTYLGALEDHQFVHTGQK 598
Y+CS C KAF L HQ +HTG+K
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEK 39
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KP++C CGK F+ + ++ HQR+H +K
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEK 39
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKT 599
K Y C C K+F + L HQ VH+G+K
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K YKC+ C +VFT + L H+ +HTG+K
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEK 39
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K YKC+ C K FT + L H+ +HTG+K
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEK 39
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K YKC+ C K FT L H+ +HTG+K
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEK 39
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K YKC+ C +VFT + L H+ VHTG K
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGK 39
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K YKC+ C K FT + L H+ VHTG K
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGK 39
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHTEG 123
KP+KC++C + F L +H+ +HT G
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGG 38
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K YKC+ C K FT L H+ VHTG K
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGK 39
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARP 537
+ CN CGK F L RH +H+ +P
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+ P+ C CGK F R+ +I+HQR H +K
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEK 39
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 127 CNLCGQTFRQKFRLLNHMISHSTEKP 152
C+ CG+ F +K++L++H +H+ EKP
Sbjct: 15 CHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K YKC C +VF + L HQ +HTG+K
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEK 39
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K YKC C K F + L HQ +HTG+K
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEK 39
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K YKC C K F L HQ +HTG+K
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEK 39
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KP+ C CGK F+R + + HQ +H +K
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEK 39
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
KP+KC +C + F L +H+L+HT
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHT 36
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 343 STQKPFSCSLCGKRFKRENGVINHQRLHQTK 373
S +KP+SC+ C + F N ++ HQ++H K
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHTVK 36
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 343 STQKPFSCSLCGKRFKRENGVINHQRLH 370
S QKP+ C+ CGK F ++ +I H+R+H
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIH 33
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKT 599
K Y+C C K F +G L H+ VHTG+++
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGERS 40
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKS 214
K Y+C C K F + L H+ VHTG++S
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGERS 40
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQKT 406
K Y+C C + F + L H+ VHTG+++
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGERS 40
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
KP++C +C + F+ LN+HK +HT
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHT 36
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 127 CNLCGQTFRQKFRLLNHMISHSTEKP 152
CN CG+TF QK L H +H+ EKP
Sbjct: 15 CNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKP 347
+ CN CG FS+K L H +H+ +KP
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K Y C+ C K F+ + L HQ HTG+K
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEK 39
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KP+ C+ CGK F +++ + HQR H +K
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEK 39
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K Y C+ C + F+ + L HQ HTG+K
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEK 39
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
KP+ C++C + F K +L+ H+ HT
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHT 36
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
++PF C+ CGK F R + + H RLH +K
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 536 RPFSCPVCKKQFKRKQDVAGHDRV 559
RPF C C K F R+ +AGH R+
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRL 34
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KPF CS C K F ++ +I HQR H +K
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEK 39
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K ++CS C KAF + L HQ HTG+K
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEK 39
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KP+ C+ CGK F + +I HQ++H +K
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQK 39
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K Y C+ C KAFT + L HQ +HT QK
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQK 39
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K Y C+ C KAFT L HQ +HT QK
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQK 39
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 343 STQKPFSCSLCGKRFKRENGVINHQRLH 370
S +KP+ C+ CGK F ++ +I HQR H
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTH 33
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 183 VYKSYKCSLCPKAFTHLAALEDHQYVHTGQKS 214
V K YKC C K + L+ HQ VH G+K+
Sbjct: 9 VEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKT 40
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 568 VYKSYKCSLCPKAFTYLGALEDHQFVHTGQKT 599
V K YKC C K + L+ HQ VH G+KT
Sbjct: 9 VEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKT 40
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 375 VYKSYKCSLCPRVFTHLAALEDHQFVHTGQKT 406
V K YKC C + + L+ HQ VH G+KT
Sbjct: 9 VEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKT 40
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 344 TQKPFSCSLCGKRFKRENGVINHQRLHQTKKV 375
+KP+ C CGK + R + HQR+H +K
Sbjct: 9 VEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKT 40
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K YKC C KAF ++ HQ +HTGQ+
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQR 39
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KP+ C CGK F + HQRLH ++
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQR 39
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 343 STQKPFSCSLCGKRFKRENGVINHQRLH 370
S +KP+ C CGK F + + H+RLH
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLH 33
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTG 596
K Y CS C KAFT+ L HQ +HTG
Sbjct: 9 KPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 343 STQKPFSCSLCGKRFKRENGVINHQRLH 370
S +KP+ CS CGK F ++ +I HQ +H
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIH 33
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTG 211
K Y CS C KAFT + L HQ +HTG
Sbjct: 9 KPYVCSDCGKAFTFKSQLIVHQGIHTG 35
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
KP+KC +C + F LN+H+ +HT
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHT 36
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K YKCS C KAF L +H+ +HTG +
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYR 39
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLH 370
+KP+ CS CGK F R + H+R+H
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIH 35
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K YKCS C KAF L +H+ +HTG +
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYR 39
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 507 KDYFSCNYCGKTFLHKYKLRRHIVIHSTARP 537
++ F C+ CGK F HK L H IH+ RP
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+ PF CS CGK F + +I HQ++H ++
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGER 39
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 379 YKCSLCPRVFTHLAALEDHQFVHTGQK 405
+ CS C +VFTH L HQ +HTG++
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGER 39
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 187 YKCSLCPKAFTHLAALEDHQYVHTGQK 213
+ CS C K FTH L HQ +HTG++
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGER 39
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
Q+P+ C CGK FK ++ +I H+R H +K
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEK 39
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKKV 375
+KP+ C CGK +KR + HQR+H +K+
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEKL 40
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K YKC C K + L+ HQ VHTG+K
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 187 YKCSLCPKAFTHLAALEDHQYVHTGQK 213
Y+CS C KAF + L HQ +H G+K
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEK 39
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 127 CNLCGQTFRQKFRLLNHMISHSTEKP 152
C CG+ FRQ L +H+ H+ EKP
Sbjct: 15 CKECGKAFRQNIHLASHLRIHTGEKP 40
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQ 212
K Y C C KAFT + L H+ VHTG+
Sbjct: 9 KPYVCQECGKAFTQSSCLSIHRRVHTGE 36
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
KPFKC +C + + ++ L +H+ +HT
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHT 36
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K +KC C K++ L HQ VHTG+K
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEK 39
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KPF C CGK + + + HQR+H +K
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEK 39
>pdb|3IUF|A Chain A, Crystal Structure Of The C2h2-Type Zinc Finger Domain Of
Human Ubi-D4
Length = 48
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 345 QKPFSCSLCGKRFKRENGVINH 366
KP++C +CGKR+K G+ H
Sbjct: 5 DKPYACDICGKRYKNRPGLSYH 26
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARP 537
+SCN CGK F K +L H +H+ +P
Sbjct: 11 YSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K Y C+ C KAFT+ L H+ VHTG K
Sbjct: 9 KPYSCNECGKAFTFKSQLIVHKGVHTGVK 37
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K Y C+ C KAFT + L H+ VHTG K
Sbjct: 9 KPYSCNECGKAFTFKSQLIVHKGVHTGVK 37
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
KP++C DC + F+ K L+ H+ +HT
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHT 36
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLH 370
+KP+ CS CGK F +++ + HQR+H
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQ 212
K Y+CS C K+F + L HQ +HTG+
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGE 38
>pdb|1ZNF|A Chain A, Three-Dimensional Solution Structure Of A Single Zinc
Finger Dna-Binding Domain
Length = 27
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 187 YKCSLCPKAFTHLAALEDHQYVH 209
YKC LC ++F +AL HQ VH
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 379 YKCSLCPRVFTHLAALEDHQFVH 401
YKC LC R F +AL HQ VH
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KPF C CGK F R + + H +LH +K
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEK 39
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K +KC C K F+ +AL H +HTG+K
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEK 39
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
KPFKC +C + F + LN H LHT
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHT 36
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
+ +KC+ C K+F A L HQ +HTG+K
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEK 39
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
++P C+ CGK F + +I HQR+H +K
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEK 39
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 127 CNLCGQTFRQKFRLLNHMISHSTEKP 152
CN CG++F Q L+ H H+ EKP
Sbjct: 15 CNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
KS++C C + FT L HQ +HTG+K
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEK 39
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
KS++C C + FT + L HQ +HTG+K
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEK 39
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
KS++C C R FT + L HQ +HTG+K
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEK 39
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTG 211
K Y C +C F HL L+ H +HTG
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTG 36
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLH 370
+KP+ C +CG RF+ + +H R+H
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIH 34
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLH 504
KP+KC+ C RF+ L H L+H
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIH 34
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLH 697
KP+KC+ C RF+ L H L+H
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIH 34
>pdb|2YSO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
656- 688) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQKT 406
KS++C C +F +L +HQ +H GQK
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQKN 40
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLH 370
+KP+ C CGK F ++ +I H R+H
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTG 596
K Y+C C KAF+ G+L H VHTG
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTG 36
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLH 370
+ P+ C CGK F R++ +++HQ+ H
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTH 35
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 150 EKPFSC--PICKKQFKRKHEVSKHDRIVHQGKK 180
EKPF+C P C +F R E+S+H R H G K
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRR-SHSGVK 41
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 343 STQKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
S +KPF CS C K F ++ ++ HQ+ H +K
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEK 37
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K YKC +C KAF L H VH+G++
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGER 39
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K YKC +C KAF + L H VH+G++
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGER 39
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 346 KPFSC--SLCGKRFKRENGVINHQRLHQTKK 374
+PF C S CGKRF R + + H+R H +K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K YKC C K + L+ HQ VHTG++
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGER 39
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K++KC C F+ ++L HQ VH G+K
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVHVGEK 39
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+KPF C CGK F + +HQR H +K
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEK 39
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 346 KPFSCSLCGKRFKRENGVINHQRLH 370
KP+ C CGKRF + + + NH R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,687,527
Number of Sequences: 62578
Number of extensions: 839912
Number of successful extensions: 4650
Number of sequences better than 100.0: 180
Number of HSP's better than 100.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2079
Number of HSP's gapped (non-prelim): 2222
length of query: 712
length of database: 14,973,337
effective HSP length: 106
effective length of query: 606
effective length of database: 8,340,069
effective search space: 5054081814
effective search space used: 5054081814
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)