RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16830
(712 letters)
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 38.1 bits (88), Expect = 0.014
Identities = 40/257 (15%), Positives = 72/257 (28%), Gaps = 25/257 (9%)
Query: 110 KILLNKHKLLHTEGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSCPIC-KKQFKRKHEV 168
+ L ++ L Q + + S++ S +
Sbjct: 212 PSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLSSSDSSSSASESPRSSLPTASSQ 271
Query: 169 SKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQ--YVHTGQ--KSHMC--NLCSA 222
S + K C +F+ + L H H+G+ K C +LC
Sbjct: 272 SSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGK 331
Query: 223 RFTCKGALLGHIKVLHEGYKRPQESCQSSHESKTCSVDEINKENEEGATIRKVKPHEDSK 282
F+ AL HI + + + S NE ++++ K ++ K
Sbjct: 332 LFSRNDALKRHILL---HTSISPAKEKLLNSSSK---FSPLLNNEPPQSLQQYKDLKNDK 385
Query: 283 EYMAL----NKPFKCDDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNH 338
+ L + FK D + L + C F+ L H
Sbjct: 386 KSETLSNSCIRNFKRDSNLSLHIITHLSFRPYN--------CKNPPCSKSFNRHYNLIPH 437
Query: 339 MISHSTQKPFSCSLCGK 355
H+ P CS+
Sbjct: 438 KKIHTNHAPLLCSILKS 454
Score = 37.0 bits (85), Expect = 0.032
Identities = 65/429 (15%), Positives = 116/429 (27%), Gaps = 30/429 (6%)
Query: 127 CNLCGQTFRQKFRLLNHMISHSTEKPFSC--PICKKQFKRKHEVSKHDRIVHQGKKYNVY 184
C C +F + L H+ SH+ EKP C C K F R E+S+H R H +
Sbjct: 36 CPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNP--SDL 93
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYKRP 244
S L + + + +L + L +
Sbjct: 94 NSKSLPLSNSKASSSSLSSSSSNSNDNNLLSSHSLPPSSRD---------PQLPDLLSIS 144
Query: 245 QESCQSSHESKTCSVDEINKENEEGATIRKVKPHEDSKEYMALNK-------PFKCDDCF 297
+ + SV+ + + S L P ++
Sbjct: 145 NLRNNPLPGNNSSSVNTPQSNSLHPPLPANSLSKDPSSNLSLLISSNVSTSIPSSSENSP 204
Query: 298 QCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRF 357
I + + + + + + + ++ S+ S S +
Sbjct: 205 LSSSYSIPSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLSSSDSSSSASESPRSS 264
Query: 358 KRENGVINHQRLH----QTKKVYKSYKCSLCPRVFTHLAALEDHQF--VHTGQKTRLCTM 411
+ K K C F+ + L H H+G+
Sbjct: 265 LPTASSQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRSVNHSGES-LKPFS 323
Query: 412 CPAIFASIGGLRSHMKIVHHGLKTQQSCQSSHESKTCSVDEINKENEEGATIRKVKPHED 471
CP R+ H L T S + S NE ++++ K ++
Sbjct: 324 CPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKN 383
Query: 472 SKEYMALNKPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVI 531
K+ L + + + + H C K+F Y L H I
Sbjct: 384 DKKSETL-SNSCIRNFKRDSNLSLHIITHLSFRPYNCKNP--PCSKSFNRHYNLIPHKKI 440
Query: 532 HSTARPFSC 540
H+ P C
Sbjct: 441 HTNHAPLLC 449
Score = 30.4 bits (68), Expect = 3.3
Identities = 66/448 (14%), Positives = 112/448 (25%), Gaps = 60/448 (13%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYKRP 244
+ C C +F+ L L H HTG+K C+ + L +
Sbjct: 32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNPS 91
Query: 245 QESCQSSHESK-TCSVDEINKENEEGATIRKVKPHEDSKEYMALNKPFKCDDCFQCFLSK 303
+ +S S S ++ + + H P D +S
Sbjct: 92 DLNSKSLPLSNSKASSSSLSSSSSNSNDNNLLSSHSLPPSS---RDPQLPDL---LSISN 145
Query: 304 ILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGV 363
+ N + + + H + S N
Sbjct: 146 LRNNPLPGNNSSS------------VNTPQSNSLHPPLPANSLSKDPSSNLSLLISSNVS 193
Query: 364 INHQR------LHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCTMCPAIFA 417
+ L + + S + L + Q +
Sbjct: 194 TSIPSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTNSQLSPKSLLS-----QSPSSL 248
Query: 418 SIGGLRSHMKIVHHGLKTQQSCQSSHESKTCSVDEI------------NKENEEGATIRK 465
S S S QSS +++ S E + R
Sbjct: 249 SSSDSSSSASESPRSSLPTASSQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRH 308
Query: 466 VKPHEDSKEYMALNKPFKCD--DCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKY 523
++ S E KPF C C + F L +H LLH +
Sbjct: 309 LRSVNHSGES---LKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSP 365
Query: 524 KL-------RRHIVIHSTARPFSCPV--CKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKC 574
L + + C + FKR +++ H + H + + K
Sbjct: 366 LLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLH-IITHLSFR---PYNCKN 421
Query: 575 SLCPKAFTYLGALEDHQFVHTGQKTHLC 602
C K+F L H+ +HT LC
Sbjct: 422 PPCSKSFNRHYNLIPHKKIHTNHAPLLC 449
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 32.7 bits (75), Expect = 0.023
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 334 YLRNHMISHSTQKPFSCSLCGKRFKR 359
LR HM +H+ +KP+ C +CGK F
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 32.4 bits (74), Expect = 0.037
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 140 LLNHMISHSTEKPFSCPICKKQFKR 164
L HM +H+ EKP+ CP+C K F
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 29.7 bits (67), Expect = 0.29
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 525 LRRHIVIHSTARPFSCPVCKKQFKR 549
LRRH+ H+ +P+ CPVC K F
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 28.5 bits (64), Expect = 0.73
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 201 ALEDHQYVHTGQKSHMCNLCSARFTC 226
L H HTG+K + C +C F+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 37.0 bits (85), Expect = 0.035
Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 13/86 (15%)
Query: 289 KPFKCD--DCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHSTQK 346
KP+KC C + + ++ L H H E I + K
Sbjct: 348 KPYKCPVEGCNKKYKNQNGLKYHMLHGH----------QNQKLHENPSPEKMNIFSAKDK 397
Query: 347 PFSCSLCGKRFKRENGVINHQRLHQT 372
P+ C +C KR+K NG+ H R H
Sbjct: 398 PYRCEVCDKRYKNLNGLKYH-RKHSH 422
Score = 35.8 bits (82), Expect = 0.073
Identities = 30/129 (23%), Positives = 48/129 (37%), Gaps = 20/129 (15%)
Query: 53 KKISGKLSHETEARTHKLNEKEESTTKKKVNTHG--------ASKENVALNKPFKCD--D 102
K+I G +S KL S+ K HG + V KP+KC
Sbjct: 299 KEIRGGISTGEMIDVRKLPCTNSSSNGKLA--HGGERNIDTPSRMLKVKDGKPYKCPVEG 356
Query: 103 CDQCFLTKILLNKHKLLHTEGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSCPICKKQF 162
C++ + + L H L GH Q + I + +KP+ C +C K++
Sbjct: 357 CNKKYKNQNGLKYHML---HGH-----QNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRY 408
Query: 163 KRKHEVSKH 171
K + + H
Sbjct: 409 KNLNGLKYH 417
Score = 34.7 bits (79), Expect = 0.16
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 17/91 (18%)
Query: 536 RPFSCPV--CKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQFV 593
+P+ CPV C K++K + + H HQ +KL + E
Sbjct: 348 KPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKL---------------HENPSPEKMNIF 392
Query: 594 HTGQKTHLCTMCPASYATIGGLRSHIKIVHH 624
K + C +C Y + GL+ H K H
Sbjct: 393 SAKDKPYRCEVCDKRYKNLNGLKYHRKHSHD 423
Score = 30.8 bits (69), Expect = 2.6
Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 14/89 (15%)
Query: 345 QKPFSCSL--CGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHT 402
KP+ C + C K++K +NG+ H LH + + E
Sbjct: 347 GKPYKCPVEGCNKKYKNQNGLKYH-MLH-----------GHQNQKLHENPSPEKMNIFSA 394
Query: 403 GQKTRLCTMCPAIFASIGGLRSHMKIVHH 431
K C +C + ++ GL+ H K H
Sbjct: 395 KDKPYRCEVCDKRYKNLNGLKYHRKHSHD 423
Score = 30.8 bits (69), Expect = 2.7
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 15/71 (21%)
Query: 150 EKPFSCPI--CKKQFKRKHEVSKHDRIVHQGKKYNVY-------------KSYKCSLCPK 194
KP+ CP+ C K++K ++ + H HQ +K + K Y+C +C K
Sbjct: 347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDK 406
Query: 195 AFTHLAALEDH 205
+ +L L+ H
Sbjct: 407 RYKNLNGLKYH 417
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 28.6 bits (64), Expect = 0.79
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIH 532
+ C CGK F K LR H+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 26.7 bits (59), Expect = 3.2
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 187 YKCSLCPKAFTHLAALEDHQYVH 209
Y+C C K F +AL +H H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 26.3 bits (58), Expect = 4.9
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 125 LTCNLCGQTFRQKFRLLNHMISH 147
C CG+ F+ K L HM +H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.9 bits (57), Expect = 5.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 348 FSCSLCGKRFKRENGVINHQRLH 370
+ C CGK FK ++ + H R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.9 bits (57), Expect = 6.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 379 YKCSLCPRVFTHLAALEDHQFVH 401
Y+C C +VF +AL +H H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys. The
C2H2 zinc finger is composed of two short beta strands
followed by an alpha helix. The amino terminal part of
the helix binds the major groove in DNA binding zinc
fingers. The accepted consensus binding sequence for Sp1
is usually defined by the asymmetric hexanucleotide core
GGGCGG but this sequence does not include, among others,
the GAG (=CTC) repeat that constitutes a high-affinity
site for Sp1 binding to the wt1 promoter.
Length = 22
Score = 28.1 bits (63), Expect = 0.92
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 511 SCNYCGKTFLHKYKLRRHIVIH 532
C CGK+F K L+RH+ H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 25.4 bits (56), Expect = 7.9
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 126 TCNLCGQTFRQKFRLLNHMISH 147
C CG++F +K L H+ +H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
>gnl|CDD|235514 PRK05580, PRK05580, primosome assembly protein PriA; Validated.
Length = 679
Score = 31.3 bits (72), Expect = 2.4
Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 25/63 (39%)
Query: 482 FKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFSCP 541
+C CD LT LH + C++CG + P +CP
Sbjct: 391 AECPHCDAS-LT---------LHRFQRRLRCHHCG---------------YQEPIPKACP 425
Query: 542 VCK 544
C
Sbjct: 426 ECG 428
>gnl|CDD|224119 COG1198, PriA, Primosomal protein N' (replication factor Y) -
superfamily II helicase [DNA replication, recombination,
and repair].
Length = 730
Score = 31.1 bits (71), Expect = 2.5
Identities = 16/61 (26%), Positives = 20/61 (32%), Gaps = 24/61 (39%)
Query: 98 FKCDDCDQCFLTKILLNKHKLLHTEGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSCPI 157
+C +CD L HK G L C+ CG + P SCP
Sbjct: 445 AECPNCD------SPLTLHK---ATGQLRCHYCG---------------YQEPIPQSCPE 480
Query: 158 C 158
C
Sbjct: 481 C 481
>gnl|CDD|226782 COG4332, COG4332, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 203
Score = 30.2 bits (68), Expect = 2.7
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 540 CPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLC 577
C C KR +G RV QGK L V+ YKC+ C
Sbjct: 20 CNSCGV--KRAFTCSGKFRVNAQGKVLDVWLIYKCTHC 55
Score = 29.4 bits (66), Expect = 4.8
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 155 CPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLC 192
C C KR S R+ QGK +V+ YKC+ C
Sbjct: 20 CNSCGV--KRAFTCSGKFRVNAQGKVLDVWLIYKCTHC 55
>gnl|CDD|234533 TIGR04285, nucleoid_noc, nucleoid occlusion protein. This model
describes nucleoid occlusion protein, a close homolog to
ParB chromosome partitioning proteins including Spo0J in
Bacillus subtilis. Its gene often is located near the
gene for the Spo0J ortholog. This protein bind a
specific DNA sequence and blocks cytokinesis from
happening until chromosome segregation is complete.
Length = 255
Score = 30.6 bits (70), Expect = 2.8
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 36 LLETTNEKLNERKILVWKKISGKLS-HETEARTHKLNEKEESTTKKKVNTHGASKE-NVA 93
LL+ +E+L + ++L + I L+ +TE KL EK E KKK G SK+ +A
Sbjct: 161 LLKLPDEEL-QLEVLN-EIIEKGLNVKQTEELIKKLLEKPEKPKKKKKRRKGFSKDVRIA 218
Query: 94 LN 95
+N
Sbjct: 219 VN 220
>gnl|CDD|226175 COG3649, COG3649, CRISPR system related protein [Defense
mechanisms].
Length = 283
Score = 29.9 bits (67), Expect = 3.8
Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 27/94 (28%)
Query: 14 FVLKHVLVEVVLQVFVGVVDAQLLETTN------EKLNERKI------------------ 49
KHV V+ + VF G ++ E T EK+ E
Sbjct: 161 MGEKHV-VDYGVYVFKGSINQNSAEKTGFTEEDAEKIKEGLWMLFENDISSARPHGSMLV 219
Query: 50 --LVWKKISGKLSHETEARTHKLNEKEESTTKKK 81
+VWK+ S KL + + A K E E +
Sbjct: 220 MRVVWKEHSSKLGYLSSAVVEKELESELKLDVTE 253
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 28.7 bits (64), Expect = 5.1
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 8/54 (14%)
Query: 152 PFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDH 205
P+ CP+C F + +H R K C +C K F + + DH
Sbjct: 73 PYVCPLCLMPFSSSVSLKQHIRYTEHSKV--------CPVCGKEFRNTDSTLDH 118
Score = 28.3 bits (63), Expect = 6.3
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 97 PFKCDDCDQCFLTKILLNKHKLLHTEGHLTCNLCGQTFRQKFRLLNHM 144
P+ C C F + + L +H + +TE C +CG+ FR L+H+
Sbjct: 73 PYVCPLCLMPFSSSVSLKQH-IRYTEHSKVCPVCGKEFRNTDSTLDHV 119
>gnl|CDD|235866 PRK06816, PRK06816, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 378
Score = 29.5 bits (67), Expect = 5.9
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 133 TFRQKFRLLNHMISHSTEKPF 153
+ +Q RLLN I T KP
Sbjct: 258 SLKQDVRLLNENIVVYTIKPL 278
>gnl|CDD|216094 pfam00747, Viral_DNA_bp, ssDNA binding protein. This protein is
found in herpesviruses and is needed for replication.
Length = 1111
Score = 29.3 bits (66), Expect = 8.5
Identities = 12/84 (14%), Positives = 24/84 (28%), Gaps = 18/84 (21%)
Query: 166 HEVSKHDRIVHQGKKYNVYK-SYKCSLCPKAFTHL---------------AALEDHQYVH 209
++ K V + ++++ + C P+ L + YV
Sbjct: 405 RKLPKFSGTVGKDEEFSPEHLALACGFSPQLLARLLWYLNRCSGYNTGGTGESDVFNYVV 464
Query: 210 TGQKSHMCNLCS--ARFTCKGALL 231
S +C LC +C
Sbjct: 465 GAASSVLCELCEGTCCHSCIHTTF 488
>gnl|CDD|116974 pfam08394, Arc_trans_TRASH, Archaeal TRASH domain. This region is
found in the C-terminus of a number of archaeal
transcriptional regulators. It is thought to function as
a metal-sensing regulatory module.
Length = 37
Score = 25.8 bits (57), Expect = 8.6
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 9/43 (20%)
Query: 512 CNYCGKTFL---HKYKLRRHIVIHSTARPFSCPVCKKQFKRKQ 551
C+YCGK YK++ + CP C K+K
Sbjct: 1 CDYCGKEIKGEPITYKVKNRVYY------VCCPTCLSDLKKKL 37
>gnl|CDD|206065 pfam13894, zf-C2H2_4, C2H2-type zinc finger. This family contains
a number of divergent C2H2 type zinc fingers.
Length = 24
Score = 25.3 bits (55), Expect = 9.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIH 532
F C CGK+F K L+RH+ H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.134 0.420
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 33,556,347
Number of extensions: 3083465
Number of successful extensions: 2972
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2942
Number of HSP's successfully gapped: 104
Length of query: 712
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 608
Effective length of database: 6,324,786
Effective search space: 3845469888
Effective search space used: 3845469888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.1 bits)