RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16830
(712 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 104 bits (261), Expect = 1e-25
Identities = 62/238 (26%), Positives = 91/238 (38%), Gaps = 55/238 (23%)
Query: 133 TFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLC 192
+ + EKP++CP C K F R +++H R H G+ K YKC C
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRT-HTGE-----KPYKCPEC 55
Query: 193 PKAFTHLAALEDHQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYKRPQESCQSSH 252
K+F+ L HQ HTG+K + C C F+ + L H + H G K
Sbjct: 56 GKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRT-HTGEK---------- 104
Query: 253 ESKTCSVDEINKENEEGATIRKVKPHEDSKEYMALNKPFKCDDCFQCFLSKILLNQHKKQ 312
P+ C +C + F L H++
Sbjct: 105 -------------------------------------PYACPECGKSFSQLAHLRAHQR- 126
Query: 313 MHFNKGGFTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLH 370
H + + C CG FS + L H +H+ +KP+ C CGK F R + + HQR H
Sbjct: 127 THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 103 bits (259), Expect = 1e-25
Identities = 68/244 (27%), Positives = 97/244 (39%), Gaps = 58/244 (23%)
Query: 162 FKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCNLCS 221
+ G+K Y C C K+F+ L +HQ HTG+K + C C
Sbjct: 3 EFGSSSSVAQAAL-EPGEK-----PYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECG 56
Query: 222 ARFTCKGALLGHIKVLHEGYKRPQESCQSSHESKTCSVDEINKENEEGATIRKVKPHEDS 281
F+ K L H + H G K
Sbjct: 57 KSFSDKKDLTRH-QRTHTGEK--------------------------------------- 76
Query: 282 KEYMALNKPFKCDDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMIS 341
P+KC +C + F + L H++ H + + C CG FS+ +LR H +
Sbjct: 77 --------PYKCPECGKSFSQRANLRAHQR-THTGEKPYACPECGKSFSQLAHLRAHQRT 127
Query: 342 HSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVH 401
H+ +KP+ C CGK F RE+ + HQR H T + K YKC C + F+ AL HQ H
Sbjct: 128 HTGEKPYKCPECGKSFSREDNLHTHQRTH-TGE--KPYKCPECGKSFSRRDALNVHQRTH 184
Query: 402 TGQK 405
TG+K
Sbjct: 185 TGKK 188
Score = 100 bits (252), Expect = 1e-24
Identities = 50/139 (35%), Positives = 70/139 (50%), Gaps = 7/139 (5%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFS 154
KP+ C +C + F L +H+ HT E C CG++F K L H +H+ EKP+
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYK 79
Query: 155 CPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKS 214
CP C K F ++ + H R H G+K Y C C K+F+ LA L HQ HTG+K
Sbjct: 80 CPECGKSFSQRANLRAHQRT-HTGEK-----PYACPECGKSFSQLAHLRAHQRTHTGEKP 133
Query: 215 HMCNLCSARFTCKGALLGH 233
+ C C F+ + L H
Sbjct: 134 YKCPECGKSFSREDNLHTH 152
Score = 100 bits (251), Expect = 2e-24
Identities = 52/139 (37%), Positives = 73/139 (52%), Gaps = 7/139 (5%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFS 154
KP+KC +C + F K L +H+ HT E C CG++F Q+ L H +H+ EKP++
Sbjct: 48 KPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYA 107
Query: 155 CPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKS 214
CP C K F + + H R H G+K YKC C K+F+ L HQ HTG+K
Sbjct: 108 CPECGKSFSQLAHLRAHQRT-HTGEK-----PYKCPECGKSFSREDNLHTHQRTHTGEKP 161
Query: 215 HMCNLCSARFTCKGALLGH 233
+ C C F+ + AL H
Sbjct: 162 YKCPECGKSFSRRDALNVH 180
Score = 100 bits (251), Expect = 2e-24
Identities = 71/270 (26%), Positives = 96/270 (35%), Gaps = 84/270 (31%)
Query: 329 FSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVF 388
+KP++C CGK F R + + HQR H T + K YKC C + F
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTH-TGE--KPYKCPECGKSF 59
Query: 389 THLAALEDHQFVHTGQKTRLCTMCPAIFASIGGLRSHMKIVHHGLKTQQSCQSSHESKTC 448
+ L HQ HTG+K C C F+ LR+H + H G
Sbjct: 60 SDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRT-HTG---------------- 102
Query: 449 SVDEINKENEEGATIRKVKPHEDSKEYMALNKPFKCDDCDQRFLTKILLNKHKLLHFDKD 508
KP+ C +C
Sbjct: 103 ------------------------------EKPYACPEC--------------------- 111
Query: 509 YFSCNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIV 568
GK+F LR H H+ +P+ CP C K F R+ ++ H R H G+
Sbjct: 112 -------GKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQR-THTGE---- 159
Query: 569 YKSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K YKC C K+F+ AL HQ HTG+K
Sbjct: 160 -KPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 91.0 bits (227), Expect = 3e-21
Identities = 59/213 (27%), Positives = 85/213 (39%), Gaps = 50/213 (23%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSY 379
+ C CG FS +L H +H+ +KP+ C CGK F + + HQR H T + K Y
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTH-TGE--KPY 78
Query: 380 KCSLCPRVFTHLAALEDHQFVHTGQKTRLCTMCPAIFASIGGLRSHMKIVHHGLKTQQSC 439
KC C + F+ A L HQ HTG+K C C F+ + LR+H + H G
Sbjct: 79 KCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRT-HTG------- 130
Query: 440 QSSHESKTCSVDEINKENEEGATIRKVKPHEDSKEYMALNKPFKCDDCDQRFLTKILLNK 499
KP+KC +C + F + L+
Sbjct: 131 ---------------------------------------EKPYKCPECGKSFSREDNLHT 151
Query: 500 HKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIH 532
H+ H + + C CGK+F + L H H
Sbjct: 152 HQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 91.0 bits (227), Expect = 3e-21
Identities = 47/119 (39%), Positives = 63/119 (52%), Gaps = 7/119 (5%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFS 154
KP+KC +C + F + L H+ HT E C CG++F Q L H +H+ EKP+
Sbjct: 76 KPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYK 135
Query: 155 CPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
CP C K F R+ + H R H G+K YKC C K+F+ AL HQ HTG+K
Sbjct: 136 CPECGKSFSREDNLHTHQRT-HTGEK-----PYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 88.3 bits (220), Expect = 3e-20
Identities = 60/240 (25%), Positives = 89/240 (37%), Gaps = 54/240 (22%)
Query: 388 FTHLAALEDHQFVHTGQKTRLCTMCPAIFASIGGLRSHMKIVHHGLKTQQSCQSSHESKT 447
++ + G+K C C F+ L H + H G
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRT-HTG--------------- 46
Query: 448 CSVDEINKENEEGATIRKVKPHEDSKEYMALNKPFKCDDCDQRFLTKILLNKHKLLHFDK 507
KP+KC +C + F K L +H+ H +
Sbjct: 47 -------------------------------EKPYKCPECGKSFSDKKDLTRHQRTHTGE 75
Query: 508 DYFSCNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLI 567
+ C CGK+F + LR H H+ +P++CP C K F + + H R H G+K
Sbjct: 76 KPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRT-HTGEK-- 132
Query: 568 VYKSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHGLK 627
YKC C K+F+ L HQ HTG+K + C C S++ L H + H G K
Sbjct: 133 ---PYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRT-HTGKK 188
Score = 86.7 bits (216), Expect = 8e-20
Identities = 52/146 (35%), Positives = 74/146 (50%), Gaps = 5/146 (3%)
Query: 289 KPFKCDDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHSTQKPF 348
KP+ C +C + F L +H++ H + + C CG FS+KK L H +H+ +KP+
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPY 78
Query: 349 SCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRL 408
C CGK F + + HQR H T + K Y C C + F+ LA L HQ HTG+K
Sbjct: 79 KCPECGKSFSQRANLRAHQRTH-TGE--KPYACPECGKSFSQLAHLRAHQRTHTGEKPYK 135
Query: 409 CTMCPAIFASIGGLRSHMKIVHHGLK 434
C C F+ L +H + H G K
Sbjct: 136 CPECGKSFSREDNLHTHQRT-HTGEK 160
Score = 78.6 bits (195), Expect = 6e-17
Identities = 56/203 (27%), Positives = 83/203 (40%), Gaps = 53/203 (26%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVY 569
++C CGK+F L H H+ +P+ CP C K F K+D+ H R H G+K
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT-HTGEK---- 76
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHGLKTQ 629
YKC C K+F+ L HQ HTG+K + C C S++ + LR+H + H G
Sbjct: 77 -PYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRT-HTG---- 130
Query: 630 QSCQSSHESKTCSVDEINKENEEGATIRKVKPHEDSKEYMALNKPFKCDDCDQRFLTKIL 689
KP+KC +C + F +
Sbjct: 131 ------------------------------------------EKPYKCPECGKSFSREDN 148
Query: 690 LNKHKLLHFDKDYFSCNYCGKTF 712
L+ H+ H + + C CGK+F
Sbjct: 149 LHTHQRTHTGEKPYKCPECGKSF 171
Score = 48.2 bits (116), Expect = 1e-06
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKP 152
KP+KC +C + F + L+ H+ HT E C CG++F ++ L H +H+ +K
Sbjct: 132 KPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 48.2 bits (116), Expect = 2e-06
Identities = 35/166 (21%), Positives = 54/166 (32%), Gaps = 53/166 (31%)
Query: 547 FKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCTMCP 606
+ G+K Y C C K+F+ L +HQ HTG+K + C C
Sbjct: 3 EFGSSSSVAQAAL-EPGEK-----PYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECG 56
Query: 607 ASYATIGGLRSHIKIVHHGLKTQQSCQSSHESKTCSVDEINKENEEGATIRKVKPHEDSK 666
S++ L H + H G
Sbjct: 57 KSFSDKKDLTRHQRT-HTG----------------------------------------- 74
Query: 667 EYMALNKPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
KP+KC +C + F + L H+ H + ++C CGK+F
Sbjct: 75 -----EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSF 115
Score = 36.7 bits (86), Expect = 0.011
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 289 KPFKCDDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHSTQKP 347
KP+KC +C + F + L+ H++ H + + C CG FS + L H +H+ +K
Sbjct: 132 KPYKCPECGKSFSREDNLHTHQR-THTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 34.3 bits (80), Expect = 0.078
Identities = 24/133 (18%), Positives = 40/133 (30%), Gaps = 47/133 (35%)
Query: 580 AFTYLGALEDHQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHGLKTQQSCQSSHESK 639
+ + + G+K + C C S++ L H + H G
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRT-HTG-------------- 46
Query: 640 TCSVDEINKENEEGATIRKVKPHEDSKEYMALNKPFKCDDCDQRFLTKILLNKHKLLHFD 699
KP+KC +C + F K L +H+ H
Sbjct: 47 --------------------------------EKPYKCPECGKSFSDKKDLTRHQRTHTG 74
Query: 700 KDYFSCNYCGKTF 712
+ + C CGK+F
Sbjct: 75 EKPYKCPECGKSF 87
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 90.3 bits (225), Expect = 9e-22
Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHM---ISHSTEK 151
+C C + FL+K L H HT E C CG+ + +K LL H + +E+
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQ 65
Query: 152 PFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQY-VHT 210
F+C +C++ F+R+ E+ H H G+ YKCS C + F L+ H +H+
Sbjct: 66 VFTCSVCQETFRRRMELRLHMVS-HTGE-----MPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Query: 211 GQKS 214
G S
Sbjct: 120 GPSS 123
Score = 87.6 bits (218), Expect = 9e-21
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 126 TCNLCGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRI--VHQGKKYNV 183
C C + F K+ L H H+ EKPF CP C K + RK + +H+ +++ ++
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQ--- 65
Query: 184 YKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYK 242
+ CS+C + F L H HTG+ + C+ CS +F K L H+ LH G
Sbjct: 66 --VFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 85.6 bits (213), Expect = 4e-20
Identities = 35/116 (30%), Positives = 54/116 (46%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSY 379
C +C F K YL+ H H+ +KPF C CGK + R+ ++ H+ + + + +
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 380 KCSLCPRVFTHLAALEDHQFVHTGQKTRLCTMCPAIFASIGGLRSHMKIVHHGLKT 435
CS+C F L H HTG+ C+ C F L+SHM +H G +
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPSS 123
Score = 81.4 bits (202), Expect = 1e-18
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 10/124 (8%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRH---IVIHSTAR 536
+C C ++FL+K L H H + F C CGK + K L H ++ + +
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQ 65
Query: 537 PFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQF-VHT 595
F+C VC++ F+R+ ++ H H G+ YKCS C + F L+ H +H+
Sbjct: 66 VFTCSVCQETFRRRMELRLHMV-SHTGE-----MPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Query: 596 GQKT 599
G +
Sbjct: 120 GPSS 123
Score = 80.2 bits (199), Expect = 3e-18
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDR--VVHQGKKLI 567
C C K FL KY L+ H H+ +PF CP C K + RK+++ H+ +++ +
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSE--- 64
Query: 568 VYKSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHGLK 627
+ + CS+C + F L H HTG+ + C+ C + L+SH+ +H G
Sbjct: 65 --QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Query: 628 T 628
+
Sbjct: 123 S 123
Score = 80.2 bits (199), Expect = 3e-18
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 289 KPFKCDDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHM---ISHSTQ 345
+C C + FLSK L H + H + F C CG + K+ L H + ++
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNR-KHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSE 64
Query: 346 KPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQF-VHTGQ 404
+ F+CS+C + F+R + H H + YKCS C + F L+ H +H+G
Sbjct: 65 QVFTCSVCQETFRRRMELRLHMVSHTGE---MPYKCSSCSQQFMQKKDLQSHMIKLHSGP 121
Query: 405 KT 406
+
Sbjct: 122 SS 123
Score = 57.9 bits (141), Expect = 2e-10
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
Query: 342 HSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQ--- 398
S C C K+F + + H R H + K ++C C + + L +H+
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGE---KPFECPKCGKCYFRKENLLEHEARN 58
Query: 399 FVHTGQKTRLCTMCPAIFASIGGLRSHMKIVHHGLK 434
++ ++ C++C F LR HM H G
Sbjct: 59 CMNRSEQVFTCSVCQETFRRRMELRLHMVS-HTGEM 93
Score = 51.7 bits (125), Expect = 3e-08
Identities = 26/154 (16%), Positives = 44/154 (28%), Gaps = 48/154 (31%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCTMCPAIFASIGGLRSHMKI--VHHGLK 434
+C C + F L+ H HTG+K C C + L H ++
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRS-- 63
Query: 435 TQQSCQSSHESKTCSVDEINKENEEGATIRKVKPHEDSKEYMALNKPFKCDDCDQRFLTK 494
+ F C C + F +
Sbjct: 64 --------------------------------------------EQVFTCSVCQETFRRR 79
Query: 495 ILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRH 528
+ L H + H + + C+ C + F+ K L+ H
Sbjct: 80 MELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 50.2 bits (121), Expect = 1e-07
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 532 HSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQ 591
S + CP C K+F K + H+R H G+ K ++C C K + L +H+
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNR-KHTGE-----KPFECPKCGKCYFRKENLLEHE 55
Query: 592 ---FVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHGLK 627
++ ++ C++C ++ LR H+ H G
Sbjct: 56 ARNCMNRSEQVFTCSVCQETFRRRMELRLHMVS-HTGEM 93
Score = 48.7 bits (117), Expect = 4e-07
Identities = 25/145 (17%), Positives = 39/145 (26%), Gaps = 48/145 (33%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCTMCPASYATIGGLRSH--IKIVHHGLK 627
+C C K F L+ H HTG+K C C Y L H ++
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRS-- 63
Query: 628 TQQSCQSSHESKTCSVDEINKENEEGATIRKVKPHEDSKEYMALNKPFKCDDCDQRFLTK 687
+ F C C + F +
Sbjct: 64 --------------------------------------------EQVFTCSVCQETFRRR 79
Query: 688 ILLNKHKLLHFDKDYFSCNYCGKTF 712
+ L H + H + + C+ C + F
Sbjct: 80 MELRLHMVSHTGEMPYKCSSCSQQF 104
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 86.5 bits (215), Expect = 1e-19
Identities = 49/158 (31%), Positives = 62/158 (39%), Gaps = 16/158 (10%)
Query: 96 KPFKCD--DCDQCFLTKILLNKHKLLHT-EGHLTCN--LCGQTFRQKFRLLNHMISHSTE 150
K + C DC + L H HT E C C + F L H ++H+ E
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 70
Query: 151 KPFSC--PICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSL--CPKAFTHLAALEDHQ 206
K F+C C +F K + KH K V Y C C KAF L+ HQ
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNR-FHNIKICV---YVCHFENCGKAFKKHNQLKVHQ 126
Query: 207 YVHTGQKSHMCN--LCSARFTCKGALLGHIKVLHEGYK 242
+ HT Q + C C RF+ L H KV H GY
Sbjct: 127 FSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV-HAGYP 163
Score = 76.9 bits (190), Expect = 2e-16
Identities = 41/155 (26%), Positives = 62/155 (40%), Gaps = 17/155 (10%)
Query: 96 KPFKCD--DCDQCFLTKILLNKHKLLHT-EGHLTCN--LCGQTFRQKFRLLNHMISHSTE 150
KPF C C++ F + L +H L HT E + TC+ C F K + H
Sbjct: 41 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNI 100
Query: 151 K--PFSCPI--CKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS--LCPKAFTHLAALED 204
K + C C K FK+ +++ H H + Y+C C K F+ + L+
Sbjct: 101 KICVYVCHFENCGKAFKKHNQLKVHQFS-HTQQL-----PYECPHEGCDKRFSLPSRLKR 154
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHE 239
H+ VH G + CS L H+ H+
Sbjct: 155 HEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 74.2 bits (183), Expect = 2e-15
Identities = 45/236 (19%), Positives = 68/236 (28%), Gaps = 58/236 (24%)
Query: 337 NHMISHSTQKPFSCSL--CGKRFKRENGVINHQRLHQTKKVYKSYKCS--LCPRVFTHLA 392
K + CS CG + + + H H T + K + C C + FT L
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKH-TGE--KPFPCKEEGCEKGFTSLH 58
Query: 393 ALEDHQFVHTGQKTRLCT--MCPAIFASIGGLRSHMKIVHHGLKTQQSCQSSHESKTCSV 450
L H HTG+K C C F + ++ H H +K
Sbjct: 59 HLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNR-FHNIKI--------------- 102
Query: 451 DEINKENEEGATIRKVKPHEDSKEYMALNKPFKC--DDCDQRFLTKILLNKHKLLHFDKD 508
+ C ++C + F L H+ H +
Sbjct: 103 -----------------------------CVYVCHFENCGKAFKKHNQLKVHQFSHTQQL 133
Query: 509 YFSCN--YCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQ 562
+ C C K F +L+RH +H+ C K H HQ
Sbjct: 134 PYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 73.0 bits (180), Expect = 6e-15
Identities = 48/244 (19%), Positives = 73/244 (29%), Gaps = 68/244 (27%)
Query: 141 LNHMISHSTEKPFSC--PICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS--LCPKAF 196
+ K + C C + + ++ H H G+ K + C C K F
Sbjct: 1 MGEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCK-HTGE-----KPFPCKEEGCEKGF 54
Query: 197 THLAALEDHQYVHTGQKSHMCN--LCSARFTCKGALLGHIKVLHEGYKRPQESCQSSHES 254
T L L H HTG+K+ C+ C RFT K + H K
Sbjct: 55 TSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNR-FHNIKI----------- 102
Query: 255 KTCSVDEINKENEEGATIRKVKPHEDSKEYMALNKPFKC--DDCFQCFLSKILLNQHKKQ 312
+ C ++C + F L H+
Sbjct: 103 ----------------------------------CVYVCHFENCGKAFKKHNQLKVHQFS 128
Query: 313 MHFNKGGFTCN--SCGLIFSEKKYLRNHMISHS---TQKPFSCSLCGKRFKRENGVINHQ 367
H + + C C FS L+ H H+ +K SCS GK + + +
Sbjct: 129 -HTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWT--LYLKHVA 185
Query: 368 RLHQ 371
HQ
Sbjct: 186 ECHQ 189
Score = 70.3 bits (173), Expect = 4e-14
Identities = 43/158 (27%), Positives = 61/158 (38%), Gaps = 15/158 (9%)
Query: 480 KPFKCD--DCDQRFLTKILLNKHKLLHFDKDYFSCNY--CGKTFLHKYKLRRHIVIHSTA 535
K + C DC + L H H + F C C K F + L RH + H+
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 70
Query: 536 RPFSC--PVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSL--CPKAFTYLGALEDHQ 591
+ F+C C +F K ++ H K+ Y C C KAF L+ HQ
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNR-FHNIKI---CVYVCHFENCGKAFKKHNQLKVHQ 126
Query: 592 FVHTGQKTHLCT--MCPASYATIGGLRSHIKIVHHGLK 627
F HT Q + C C ++ L+ H K+ H G
Sbjct: 127 FSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV-HAGYP 163
Score = 69.9 bits (172), Expect = 5e-14
Identities = 46/219 (21%), Positives = 69/219 (31%), Gaps = 51/219 (23%)
Query: 115 KHKLLHT-EGHLTCNL--CGQTFRQKFRLLNHMISHSTEKPFSC--PICKKQFKRKHEVS 169
K L C+ CG + + ++L H+ H+ EKPF C C+K F H ++
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 170 KHDRIVHQGKKYNVYKSYKCS--LCPKAFTHLAALEDHQYVHTGQKSH--MCNL--CSAR 223
+H H G+ K++ C C FT A ++ H K +C+ C
Sbjct: 62 RHSLT-HTGE-----KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKA 115
Query: 224 FTCKGALLGHIKVLHEG---YKRPQESC-----QSSHESKTCSVDEINKENEEGATIRKV 275
F L H H Y+ P E C S R
Sbjct: 116 FKKHNQLKVHQFS-HTQQLPYECPHEGCDKRFSLPSR------------------LKRHE 156
Query: 276 KPHEDSKEYMALNKPFKCDDCFQCFLSKILLNQHKKQMH 314
K H K C + + +H + H
Sbjct: 157 KVHAGYPCK----KDDSCSFVGKTWTL---YLKHVAECH 188
Score = 69.9 bits (172), Expect = 6e-14
Identities = 59/244 (24%), Positives = 79/244 (32%), Gaps = 67/244 (27%)
Query: 364 INHQRLHQTKKVYKSYKCSL--CPRVFTHLAALEDHQFVHTGQKTRLCT--MCPAIFASI 419
+ + L VYK Y CS C + L+ H HTG+K C C F S+
Sbjct: 1 MGEKALP---VVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSL 57
Query: 420 GGLRSHMKIVHHGLKTQQSCQSSHESKTCSVDEINKENEEGATIRKVKPHEDSKEYMALN 479
L H H G
Sbjct: 58 HHLTRHSLT-HTG----------------------------------------------E 70
Query: 480 KPFKCDD--CDQRFLTKILLNKHKLLHF-DKDY-FSCNY--CGKTFLHKYKLRRHIVIHS 533
K F CD CD RF TK + KH K + C++ CGK F +L+ H H+
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHT 130
Query: 534 TARPFSC--PVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQ 591
P+ C C K+F + H++ VH G K CS K +T L+
Sbjct: 131 QQLPYECPHEGCDKRFSLPSRLKRHEK-VHAGYPC--KKDDSCSFVGKTWTLY--LKHVA 185
Query: 592 FVHT 595
H
Sbjct: 186 ECHQ 189
Score = 68.8 bits (169), Expect = 1e-13
Identities = 47/217 (21%), Positives = 74/217 (34%), Gaps = 49/217 (22%)
Query: 205 HQYVHTGQKSHMCNL--CSARFTCKGALLGHIKVLHEG---YKRPQESC-----QSSHES 254
+ + K ++C+ C A + L H+ H G + +E C H
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCK-HTGEKPFPCKEEGCEKGFTSLHH-- 59
Query: 255 KTCSVDEINKENEEGATIRKVKPH--EDSKEYMALNKPFKCDD--CFQCFLSKILLNQHK 310
R H E K F CD C F +K + +H
Sbjct: 60 ----------------LTRHSLTHTGE---------KNFTCDSDGCDLRFTTKANMKKHF 94
Query: 311 KQMHFNKGG-FTCNS--CGLIFSEKKYLRNHMISHSTQKPFSCS--LCGKRFKRENGVIN 365
+ H K + C+ CG F + L+ H SH+ Q P+ C C KRF + +
Sbjct: 95 NRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKR 154
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHT 402
H+++H K CS + +T L+ H
Sbjct: 155 HEKVHAGYPCKKDDSCSFVGKTWTLY--LKHVAECHQ 189
Score = 66.8 bits (164), Expect = 6e-13
Identities = 37/154 (24%), Positives = 56/154 (36%), Gaps = 16/154 (10%)
Query: 480 KPFKCD--DCDQRFLTKILLNKHKLLHFDKDYFSCN--YCGKTFLHKYKLRRHIVIHST- 534
KPF C C++ F + L +H L H + F+C+ C F K +++H
Sbjct: 41 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNI 100
Query: 535 -ARPFSCPV--CKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS--LCPKAFTYLGALED 589
+ C C K FK+ + H H + Y+C C K F+ L+
Sbjct: 101 KICVYVCHFENCGKAFKKHNQLKVHQFS-HTQQLP-----YECPHEGCDKRFSLPSRLKR 154
Query: 590 HQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVH 623
H+ VH G C T H+ H
Sbjct: 155 HEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 188
Score = 65.3 bits (160), Expect = 3e-12
Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 14/152 (9%)
Query: 289 KPFKCD--DCFQCFLSKILLNQHKKQMHFNKGGFTCN--SCGLIFSEKKYLRNHMISHST 344
KPF C C + F S L +H H + FTC+ C L F+ K ++ H
Sbjct: 41 KPFPCKEEGCEKGFTSLHHLTRHSL-THTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHN 99
Query: 345 QK--PFSCSL--CGKRFKRENGVINHQRLHQTKKVYKSYKCS--LCPRVFTHLAALEDHQ 398
K + C CGK FK+ N + HQ H T++ Y+C C + F+ + L+ H+
Sbjct: 100 IKICVYVCHFENCGKAFKKHNQLKVHQFSH-TQQ--LPYECPHEGCDKRFSLPSRLKRHE 156
Query: 399 FVHTGQKTRLCTMCPAIFASIGGLRSHMKIVH 430
VH G + C + + H+ H
Sbjct: 157 KVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 188
Score = 59.1 bits (144), Expect = 3e-10
Identities = 48/227 (21%), Positives = 77/227 (33%), Gaps = 69/227 (30%)
Query: 320 FTCNS--CGLIFSEKKYLRNHMISHSTQKPFSCS--LCGKRFKRENGVINHQRLHQTKKV 375
+ C+ CG +++ L+ H+ H+ +KPF C C K F + + H H T +
Sbjct: 13 YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTH-TGE- 70
Query: 376 YKSYKCS--LCPRVFTHLAALEDHQFVHTGQKTR--LCTM--CPAIFASIGGLRSHMKIV 429
K++ C C FT A ++ H K +C C F L+ H
Sbjct: 71 -KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFS- 128
Query: 430 HHGLKTQQSCQSSHESKTCSVDEINKENEEGATIRKVKPHEDSKEYMALNKPFKC--DDC 487
H P++C + C
Sbjct: 129 HTQ----------------------------------------------QLPYECPHEGC 142
Query: 488 DQRFLTKILLNKHKLLH----FDKDYFSCNYCGKTF--LHKYKLRRH 528
D+RF L +H+ +H KD SC++ GKT+ K+ H
Sbjct: 143 DKRFSLPSRLKRHEKVHAGYPCKKDD-SCSFVGKTWTLYLKHVAECH 188
Score = 49.9 bits (120), Expect = 4e-07
Identities = 43/200 (21%), Positives = 69/200 (34%), Gaps = 40/200 (20%)
Query: 528 HIVIHSTARPFSC--PVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS--LCPKAFTY 583
+ + + C C + + + H H G+K + C C K FT
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCK-HTGEK-----PFPCKEEGCEKGFTS 56
Query: 584 LGALEDHQFVHTGQKTHLCT--MCPASYATIGGLRSHIKIVHHGLKTQQSCQSSHESKTC 641
L L H HTG+K C C + T ++ H H +K C
Sbjct: 57 LHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNR-FHNIKICVY--------VC 107
Query: 642 SVDEINKE-NEEGATIRKVKPH--EDSKEYMALNKPFKC--DDCDQRFLTKILLNKHKLL 696
+ K + H + P++C + CD+RF L +H+ +
Sbjct: 108 HFENCGKAFKKHNQLKVHQFSHTQQ---------LPYECPHEGCDKRFSLPSRLKRHEKV 158
Query: 697 H----FDKDYFSCNYCGKTF 712
H KD SC++ GKT+
Sbjct: 159 HAGYPCKKDD-SCSFVGKTW 177
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 85.0 bits (211), Expect = 2e-19
Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 22/157 (14%)
Query: 96 KPFKCDDCDQCFLTKILLNKH---KLLHT-EGHLTCNLCGQT-----FRQKFRLLNHMIS 146
+ D C Q F ++ L H + +H C+ G + F+ ++ L+ HM
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 147 HSTEKPFSCPI--CKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKC--SLCPKAFTHLAAL 202
H+ EKP C C+K + R + H R H G+ K Y C C KAF++ +
Sbjct: 62 HTGEKPHKCTFEGCRKSYSRLENLKTHLRS-HTGE-----KPYMCEHEGCSKAFSNASDR 115
Query: 203 EDHQY-VHTGQKSHMCNL--CSARFTCKGALLGHIKV 236
HQ H+ +K ++C L C+ R+T +L H+K
Sbjct: 116 AKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 79.9 bits (198), Expect = 1e-17
Identities = 43/158 (27%), Positives = 66/158 (41%), Gaps = 18/158 (11%)
Query: 289 KPFKCDDCFQCFLSKILLNQH--KKQMHFNKGGFTCNSCGLI-----FSEKKYLRNHMIS 341
+ D C Q F S+ L H + +H + F C+ G F + L HM
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 342 HSTQKPFSCSL--CGKRFKRENGVINHQRLHQTKKVYKSYKC--SLCPRVFTHLAALEDH 397
H+ +KP C+ C K + R + H R H T + K Y C C + F++ + H
Sbjct: 62 HTGEKPHKCTFEGCRKSYSRLENLKTHLRSH-TGE--KPYMCEHEGCSKAFSNASDRAKH 118
Query: 398 QF-VHTGQKTRLCTM--CPAIFASIGGLRSHMKIVHHG 432
Q H+ +K +C + C + LR H+K HG
Sbjct: 119 QNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT-VHG 155
Score = 79.2 bits (196), Expect = 1e-17
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 22/161 (13%)
Query: 480 KPFKCDDCDQRFLTKILLNKH---KLLHFDKDYFSCNYCG-----KTFLHKYKLRRHIVI 531
+ D C Q F ++ L H + +H ++ F C++ G + F +Y L H+
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 532 HSTARPFSCPV--CKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKC--SLCPKAFTYLGAL 587
H+ +P C C+K + R +++ H R H G+ K Y C C KAF+
Sbjct: 62 HTGEKPHKCTFEGCRKSYSRLENLKTHLR-SHTGE-----KPYMCEHEGCSKAFSNASDR 115
Query: 588 EDHQF-VHTGQKTHLCTM--CPASYATIGGLRSHIKIVHHG 625
HQ H+ +K ++C + C Y LR H+K HG
Sbjct: 116 AKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT-VHG 155
Score = 63.4 bits (155), Expect = 6e-12
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 15/127 (11%)
Query: 320 FTCNSCGLIFSEKKYLRNHMIS---HSTQKPFSCSLCG-----KRFKRENGVINHQRLHQ 371
+ C F ++ L +H+ S H +K F C G + FK + ++ H R H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRH- 62
Query: 372 TKKVYKSYKCSL--CPRVFTHLAALEDHQFVHTGQKTRLCT--MCPAIFASIGGLRSHMK 427
T + K +KC+ C + ++ L L+ H HTG+K +C C F++ H
Sbjct: 63 TGE--KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQN 120
Query: 428 IVHHGLK 434
H K
Sbjct: 121 RTHSNEK 127
Score = 57.2 bits (139), Expect = 7e-10
Identities = 26/120 (21%), Positives = 41/120 (34%), Gaps = 23/120 (19%)
Query: 150 EKPFSCPICKKQFKRKHEVSKHDRI--VHQGKKYNVYKSYKC-----SLCPKAFTHLAAL 202
E C ++F + ++ H +H + K + C S + F L
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGER-----KEFVCHWGGCSRELRPFKAQYML 55
Query: 203 EDHQYVHTGQKSHMCNL--CSARFTCKGALLGHIKVLHEG---YKRPQESC-----QSSH 252
H HTG+K H C C ++ L H++ H G Y E C +S
Sbjct: 56 VVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRS-HTGEKPYMCEHEGCSKAFSNASD 114
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 82.9 bits (206), Expect = 2e-19
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 113 LNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKH 171
+ +L + C CG+ F + + LL H +H+ E+P++C IC K F+R+ + H
Sbjct: 5 SSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH 64
Query: 172 DRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
I H + K +KC C K F L H+ +H S
Sbjct: 65 RYI-HSKE-----KPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
Score = 71.7 bits (177), Expect = 2e-15
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 497 LNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGH 556
+ +L K F C +CG+ F Y L H H+ RP++C +C K F+R+ + H
Sbjct: 5 SSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH 64
Query: 557 DRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
+H + K +KC C K F L H+ +H +
Sbjct: 65 RY-IHSKE-----KPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAA 105
Score = 70.5 bits (174), Expect = 4e-15
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Query: 140 LLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHL 199
+ T+K F C C + F + + + H+R H ++ Y C +C KAF
Sbjct: 5 SSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERT-HTDER-----PYTCDICHKAFRRQ 58
Query: 200 AALEDHQYVHTGQKSHMCNLCSARFTCKGALLGH 233
L DH+Y+H+ +K C C F L H
Sbjct: 59 DHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH 92
Score = 64.4 bits (158), Expect = 7e-13
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 289 KPFKCDDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHSTQKPF 348
K F C C + F L H++ H ++ +TC+ C F + +LR+H HS +KPF
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 349 SCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
C CGK F + + H+ LH + S +
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLH-MQT--SSPTAA 105
Score = 63.2 bits (155), Expect = 2e-12
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 334 YLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAA 393
+ T+K F C CG+ F + ++ H+R H + + Y C +C + F
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDE---RPYTCDICHKAFRRQDH 60
Query: 394 LEDHQFVHTGQKTRLCTMCPAIFASIGGLRSHMKI 428
L DH+++H+ +K C C F L H +
Sbjct: 61 LRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTL 95
Score = 55.1 bits (134), Expect = 1e-09
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 7/103 (6%)
Query: 525 LRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYL 584
+ T + F C C + F + ++ H+R H ++ Y C +C KAF
Sbjct: 5 SSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERT-HTDER-----PYTCDICHKAFRRQ 58
Query: 585 GALEDHQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHGLK 627
L DH+++H+ +K C C + L H K +H
Sbjct: 59 DHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH-KTLHMQTS 100
Score = 52.4 bits (127), Expect = 1e-08
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFS 154
+P+ CD C + F + L H+ +H+ E C CG+ F Q L H H +
Sbjct: 44 RPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPT 103
Query: 155 C 155
Sbjct: 104 A 104
Score = 43.2 bits (103), Expect = 2e-05
Identities = 17/61 (27%), Positives = 26/61 (42%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFS 539
+P+ CD C + F + L H+ +H + F C CGK F L H +H +
Sbjct: 44 RPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPT 103
Query: 540 C 540
Sbjct: 104 A 104
Score = 35.1 bits (82), Expect = 0.011
Identities = 27/128 (21%), Positives = 40/128 (31%), Gaps = 47/128 (36%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHGLKTQ 629
K + C C + FT L H+ HT ++ + C +C ++ LR H + +H
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSK---- 70
Query: 630 QSCQSSHESKTCSVDEINKENEEGATIRKVKPHEDSKEYMALNKPFKCDDCDQRFLTKIL 689
KPFKC +C + F
Sbjct: 71 ------------------------------------------EKPFKCQECGKGFCQSRT 88
Query: 690 LNKHKLLH 697
L HK LH
Sbjct: 89 LAVHKTLH 96
Score = 32.8 bits (76), Expect = 0.071
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
K F C C + F L H+ H D+ ++C+ C K F
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAF 55
Score = 32.4 bits (75), Expect = 0.11
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
+P+ CD C + F + L H+ +H + F C CGK F
Sbjct: 44 RPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGF 83
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 84.3 bits (209), Expect = 3e-19
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 20/137 (14%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT----------EGHLTCNLCGQTFRQKFRLLNHMI 145
CD+ F T L H + C G++F+ K++L+NH+
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR 83
Query: 146 SHSTEKPFSCPI--CKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSL--CPKAFTHLAA 201
H+ EKPF CP C K F R + H R H G+ K +KC C + F + +
Sbjct: 84 VHTGEKPFPCPFPGCGKIFARSENLKIHKRT-HTGE-----KPFKCEFEGCDRRFANSSD 137
Query: 202 LEDHQYVHTGQKSHMCN 218
+ H +VHT KS +
Sbjct: 138 RKKHMHVHTSDKSGPSS 154
Score = 78.9 bits (195), Expect = 2e-17
Identities = 39/137 (28%), Positives = 55/137 (40%), Gaps = 19/137 (13%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLH---------FDKDYFSCNYCGKTFLHKYKLRRHIV 530
CD+ F T L H + + C GK+F KYKL HI
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR 83
Query: 531 IHSTARPFSCPV--CKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSL--CPKAFTYLGA 586
+H+ +PF CP C K F R +++ H R H G+ K +KC C + F
Sbjct: 84 VHTGEKPFPCPFPGCGKIFARSENLKIHKR-THTGE-----KPFKCEFEGCDRRFANSSD 137
Query: 587 LEDHQFVHTGQKTHLCT 603
+ H VHT K+ +
Sbjct: 138 RKKHMHVHTSDKSGPSS 154
Score = 71.5 bits (176), Expect = 8e-15
Identities = 37/134 (27%), Positives = 53/134 (39%), Gaps = 15/134 (11%)
Query: 289 KPFKCDDCFQCFLSKILLNQHK--------KQMHFNKGGFTCNSCGLIFSEKKYLRNHMI 340
C + F + L H +Q + C G F K L NH+
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR 83
Query: 341 SHSTQKPFSCSL--CGKRFKRENGVINHQRLHQTKKVYKSYKCSL--CPRVFTHLAALED 396
H+ +KPF C CGK F R + H+R H T + K +KC C R F + + +
Sbjct: 84 VHTGEKPFPCPFPGCGKIFARSENLKIHKRTH-TGE--KPFKCEFEGCDRRFANSSDRKK 140
Query: 397 HQFVHTGQKTRLCT 410
H VHT K+ +
Sbjct: 141 HMHVHTSDKSGPSS 154
Score = 70.0 bits (172), Expect = 3e-14
Identities = 32/136 (23%), Positives = 46/136 (33%), Gaps = 14/136 (10%)
Query: 130 CGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYN---VYKS 186
G + + + L+ + C + F HE+ H + H G V
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 187 YKCSLCPKAFTHLAALEDHQYVHTGQKSHMCNL--CSARFTCKGALLGHIKVLHEG---Y 241
+C K+F L +H VHTG+K C C F L H + H G +
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT-HTGEKPF 121
Query: 242 KRPQESC-----QSSH 252
K E C SS
Sbjct: 122 KCEFEGCDRRFANSSD 137
Score = 65.4 bits (160), Expect = 9e-13
Identities = 36/153 (23%), Positives = 53/153 (34%), Gaps = 18/153 (11%)
Query: 295 DCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHSTQKPFS----- 349
K + + SC FS L H+ P
Sbjct: 2 SSGSSGQPIKQELSCK-WIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
Query: 350 ----CSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSL--CPRVFTHLAALEDHQFVHTG 403
C GK FK + ++NH R+H T + K + C C ++F L+ H+ HTG
Sbjct: 61 YWEECPREGKSFKAKYKLVNHIRVH-TGE--KPFPCPFPGCGKIFARSENLKIHKRTHTG 117
Query: 404 QKTRLCTM--CPAIFASIGGLRSHMKIVHHGLK 434
+K C C FA+ + HM + H K
Sbjct: 118 EKPFKCEFEGCDRRFANSSDRKKHMHV-HTSDK 149
Score = 61.5 bits (150), Expect = 3e-11
Identities = 35/141 (24%), Positives = 52/141 (36%), Gaps = 20/141 (14%)
Query: 500 HKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFS---------CPVCKKQFKRK 550
K + + C +TF ++L H+ + P CP K FK K
Sbjct: 16 CKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAK 75
Query: 551 QDVAGHDRVVHQGKKLIVYKSYKCSL--CPKAFTYLGALEDHQFVHTGQKTHLCTM--CP 606
+ H R VH G+ K + C C K F L+ H+ HTG+K C C
Sbjct: 76 YKLVNHIR-VHTGE-----KPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCD 129
Query: 607 ASYATIGGLRSHIKIVHHGLK 627
+A + H+ + H K
Sbjct: 130 RRFANSSDRKKHMHV-HTSDK 149
Score = 58.5 bits (142), Expect = 3e-10
Identities = 23/112 (20%), Positives = 36/112 (32%), Gaps = 5/112 (4%)
Query: 515 CGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGK---KLIVYKS 571
G + + I C + F ++ H + H G V
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 572 YKCSLCPKAFTYLGALEDHQFVHTGQKTHLCTM--CPASYATIGGLRSHIKI 621
+C K+F L +H VHTG+K C C +A L+ H +
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT 114
Score = 57.7 bits (140), Expect = 4e-10
Identities = 36/196 (18%), Positives = 63/196 (32%), Gaps = 49/196 (25%)
Query: 192 CPKAFTHLAALEDHQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLH-EGYKRPQESCQS 250
+ + +++ Q S C F+ L+ H+ + H G ++ C
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC-- 60
Query: 251 SHESKTCSVDEINKENEEGATIRKVKPHEDSKEYMALNKPFKCDDCFQCFLSKILLNQHK 310
+C + F +K L H
Sbjct: 61 --------------------------------------YWEECPREGKSFKAKYKLVNHI 82
Query: 311 KQMHFNKGGFTCNS--CGLIFSEKKYLRNHMISHSTQKPFSCSL--CGKRFKRENGVINH 366
+ +H + F C CG IF+ + L+ H +H+ +KPF C C +RF + H
Sbjct: 83 R-VHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKH 141
Query: 367 QRLHQTKKVYKSYKCS 382
+H + KS S
Sbjct: 142 MHVHTSD---KSGPSS 154
Score = 51.5 bits (124), Expect = 7e-08
Identities = 29/201 (14%), Positives = 56/201 (27%), Gaps = 63/201 (31%)
Query: 353 CGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK------- 405
G + ++ + + + + S C R F+ + L H +
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQL---SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHV 59
Query: 406 --TRLCTMCPAIFASIGGLRSHMKIVHHGLKTQQSCQSSHESKTCSVDEINKENEEGATI 463
C F + L +H+++ H G
Sbjct: 60 CYWEECPREGKSFKAKYKLVNHIRV-HTG------------------------------- 87
Query: 464 RKVKPHEDSKEYMALNKPFKCD--DCDQRFLTKILLNKHKLLHFDKDYFSCNY--CGKTF 519
KPF C C + F L HK H + F C + C + F
Sbjct: 88 ---------------EKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRF 132
Query: 520 LHKYKLRRHIVIHSTARPFSC 540
+ ++H+ +H++ +
Sbjct: 133 ANSSDRKKHMHVHTSDKSGPS 153
Score = 31.5 bits (72), Expect = 0.51
Identities = 10/49 (20%), Positives = 14/49 (28%), Gaps = 9/49 (18%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLH---------FDKDYFSCNYCGKTF 712
CD+ F T L H + + C GK+F
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSF 72
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 81.4 bits (202), Expect = 1e-18
Identities = 35/126 (27%), Positives = 49/126 (38%), Gaps = 12/126 (9%)
Query: 96 KPFKCD--DCDQCFLTKILLNKHKLLHTEGHLTCNLCGQTFRQKFRLLNHMISHSTEKPF 153
+ C C + F + KH H C CG+ F + +L H + H+ EKPF
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPF 63
Query: 154 SCPI--CKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSL--CPKAFTHLAALEDHQYVH 209
C C K+F + H RI H G + Y C C K F L+ H H
Sbjct: 64 QCTFEGCGKRFSLDFNLRTHVRI-HTGD-----RPYVCPFDGCNKKFAQSTNLKSHILTH 117
Query: 210 TGQKSH 215
K++
Sbjct: 118 AKAKNN 123
Score = 73.7 bits (182), Expect = 6e-16
Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 13/125 (10%)
Query: 480 KPFKCD--DCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARP 537
+ C C + F + KH H + + C CGK F+ KL+RH ++H+ +P
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTHGPRVH-VCAECGKAFVESSKLKRHQLVHTGEKP 62
Query: 538 FSCPV--CKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSL--CPKAFTYLGALEDHQFV 593
F C C K+F ++ H R +H G + Y C C K F L+ H
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVR-IHTGD-----RPYVCPFDGCNKKFAQSTNLKSHILT 116
Query: 594 HTGQK 598
H K
Sbjct: 117 HAKAK 121
Score = 71.8 bits (177), Expect = 3e-15
Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 11/123 (8%)
Query: 289 KPFKCD--DCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHSTQK 346
+ C C + F + +H H + C CG F E L+ H + H+ +K
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLH-THGPRV-HVCAECGKAFVESSKLKRHQLVHTGEK 61
Query: 347 PFSCSL--CGKRFKRENGVINHQRLHQTKKVYKSYKCSL--CPRVFTHLAALEDHQFVHT 402
PF C+ CGKRF + + H R+H T + Y C C + F L+ H H
Sbjct: 62 PFQCTFEGCGKRFSLDFNLRTHVRIH-TGD--RPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Query: 403 GQK 405
K
Sbjct: 119 KAK 121
Score = 60.2 bits (147), Expect = 3e-11
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 20/115 (17%)
Query: 150 EKPFSCPI--CKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQY 207
+ +CP C K F+ + KH H G + + C+ C KAF + L+ HQ
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHT-H-GPR-----VHVCAECGKAFVESSKLKRHQL 55
Query: 208 VHTGQKSHMCNL--CSARFTCKGALLGHIKVLHEG---YKRPQESC-----QSSH 252
VHTG+K C C RF+ L H+++ H G Y P + C QS++
Sbjct: 56 VHTGEKPFQCTFEGCGKRFSLDFNLRTHVRI-HTGDRPYVCPFDGCNKKFAQSTN 109
Score = 55.6 bits (135), Expect = 1e-09
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 289 KPFKCDDCFQCFLSKILLNQHKKQMHFNKGGFTCNS--CGLIFSEKKYLRNHMISHSTQK 346
+ C +C + F+ L +H+ +H + F C CG FS LR H+ H+ +
Sbjct: 33 RVHVCAECGKAFVESSKLKRHQL-VHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 91
Query: 347 PFSCSL--CGKRFKRENGVINHQRLHQTKKVYK 377
P+ C C K+F + + +H H K +
Sbjct: 92 PYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 47.1 bits (113), Expect = 1e-06
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 536 RPFSCPV--CKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQFV 593
R +CP C K F+ + H H G + + C+ C KAF L+ HQ V
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHT-H-GPR-----VHVCAECGKAFVESSKLKRHQLV 56
Query: 594 HTGQKTHLCTM--CPASYATIGGLRSHIKI 621
HTG+K CT C ++ LR+H++I
Sbjct: 57 HTGEKPFQCTFEGCGKRFSLDFNLRTHVRI 86
Score = 44.0 bits (105), Expect = 1e-05
Identities = 33/170 (19%), Positives = 55/170 (32%), Gaps = 56/170 (32%)
Query: 185 KSYKCSL--CPKAFTHLAALEDHQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYK 242
++ C C K F +A+ H + H G + H+C C F L H V H G
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLV-HTG-- 59
Query: 243 RPQESCQSSHESKTCSVDEINKENEEGATIRKVKPHEDSKEYMALNKPFKC--DDCFQCF 300
KPF+C + C + F
Sbjct: 60 ---------------------------------------------EKPFQCTFEGCGKRF 74
Query: 301 LSKILLNQHKKQMHFNKGGFTC--NSCGLIFSEKKYLRNHMISHSTQKPF 348
L H + +H + C + C F++ L++H+++H+ K
Sbjct: 75 SLDFNLRTHVR-IHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 38.7 bits (91), Expect = 0.001
Identities = 33/168 (19%), Positives = 53/168 (31%), Gaps = 54/168 (32%)
Query: 377 KSYKCSL--CPRVFTHLAALEDHQFVHTGQKTRLCTMCPAIFASIGGLRSHMKIVHHGLK 434
++ C C ++F +A+ H H G + +C C F L+ H + H G
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLV-HTG-- 59
Query: 435 TQQSCQSSHESKTCSVDEINKENEEGATIRKVKPHEDSKEYMALNKPFKC--DDCDQRFL 492
KPF+C + C +RF
Sbjct: 60 --------------------------------------------EKPFQCTFEGCGKRFS 75
Query: 493 TKILLNKHKLLHFDKDYFSCNY--CGKTFLHKYKLRRHIVIHSTARPF 538
L H +H + C + C K F L+ HI+ H+ A+
Sbjct: 76 LDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 30.9 bits (71), Expect = 0.52
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNY--CGKTF 712
+ C +C + F+ L +H+L+H + F C + CGK F
Sbjct: 33 RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRF 74
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 78.2 bits (194), Expect = 8e-18
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 127 CNLCGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKS 186
C +CG+ F +K +L HM H+ KP+ C C ++KH RI H + +
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-HSDE-----RP 64
Query: 187 YKCSLCPKAFTHLAALEDHQYVHTGQKSHMC 217
+KC +CP A + + L H HTG
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 70.5 bits (174), Expect = 3e-15
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 512 CNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKS 571
C CGK F K KL+ H+ H+ +P+ C C + H R +H + +
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDE-----RP 64
Query: 572 YKCSLCPKAFTYLGALEDHQFVHTGQKTHLC 602
+KC +CP A L H HTG
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 70.5 bits (174), Expect = 4e-15
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSY 379
C CG FS K L+ HM H+ KP+ C C + + H R+H + + + +
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH-SDE--RPF 65
Query: 380 KCSLCPRVFTHLAALEDHQFVHTGQK 405
KC +CP + + L H HTG
Sbjct: 66 KCQICPYASRNSSQLTVHLRSHTGDS 91
Score = 69.0 bits (170), Expect = 1e-14
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 146 SHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDH 205
S + P C +C K F RK ++ H R H G K YKC C A ++L H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRC-HTGVK-----PYKCKTCDYAAADSSSLNKH 55
Query: 206 QYVHTGQKSHMCNLCSARFTCKGALLGH 233
+H+ ++ C +C L H
Sbjct: 56 LRIHSDERPFKCQICPYASRNSSQLTVH 83
Score = 62.1 bits (152), Expect = 3e-12
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 289 KPFKCDDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHSTQKPF 348
P KC+ C +CF K L H + H + C +C ++ L H+ HS ++PF
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPF 65
Query: 349 SCSLCGKRFKRENGVINHQRLHQTKKVYK 377
C +C + + + H R H
Sbjct: 66 KCQICPYASRNSSQLTVHLRSHTGDSGPS 94
Score = 60.9 bits (149), Expect = 8e-12
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 341 SHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFV 400
S + P C +CGK F R++ + H R H K YKC C ++L H +
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGV---KPYKCKTCDYAAADSSSLNKHLRI 58
Query: 401 HTGQKTRLCTMCPAIFASIGGLRSHMKI 428
H+ ++ C +CP + L H++
Sbjct: 59 HSDERPFKCQICPYASRNSSQLTVHLRS 86
Score = 54.7 bits (133), Expect = 1e-09
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFS 154
KP+KC CD LNKH +H+ E C +C R +L H+ SH+ + S
Sbjct: 35 KPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPS 94
Query: 155 C 155
Sbjct: 95 S 95
Score = 53.2 bits (129), Expect = 4e-09
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
Query: 532 HSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQ 591
++ P C VC K F RK + H R H G K YKC C A +L H
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRC-HTGVK-----PYKCKTCDYAAADSSSLNKHL 56
Query: 592 FVHTGQKTHLCTMCPASYATIGGLRSHIKI 621
+H+ ++ C +CP + L H++
Sbjct: 57 RIHSDERPFKCQICPYASRNSSQLTVHLRS 86
Score = 47.0 bits (113), Expect = 6e-07
Identities = 19/61 (31%), Positives = 26/61 (42%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFS 539
KP+KC CD LNKH +H D+ F C C + +L H+ H+ S
Sbjct: 35 KPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPS 94
Query: 540 C 540
Sbjct: 95 S 95
Score = 38.2 bits (90), Expect = 8e-04
Identities = 26/128 (20%), Positives = 35/128 (27%), Gaps = 47/128 (36%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHGLKTQ 629
+KC +C K F+ L+ H HTG K + C C + A L H++I H
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRI-HSD---- 61
Query: 630 QSCQSSHESKTCSVDEINKENEEGATIRKVKPHEDSKEYMALNKPFKCDDCDQRFLTKIL 689
+PFKC C
Sbjct: 62 ------------------------------------------ERPFKCQICPYASRNSSQ 79
Query: 690 LNKHKLLH 697
L H H
Sbjct: 80 LTVHLRSH 87
Score = 35.5 bits (83), Expect = 0.008
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
KP+KC CD LNKH +H D+ F C C
Sbjct: 35 KPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYAS 74
Score = 32.0 bits (74), Expect = 0.12
Identities = 11/40 (27%), Positives = 14/40 (35%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
P KC+ C + F K L H H + C C
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAA 46
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 78.3 bits (194), Expect = 9e-18
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 130 CGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKC 189
CG++F K + HM H +P+ C +C K+FK KH + H +I H G K Y+C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI-HTGI-----KPYEC 68
Query: 190 SLCPKAFTHLAALEDHQYVHTGQKSHMCNLCSARFTCKGAL 230
++C K F + H++V + KS+ T
Sbjct: 69 NICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGP 107
Score = 69.8 bits (172), Expect = 9e-15
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFS 154
K + C C + F K ++H +H C +CG+ F+ K L+ HM H+ KP+
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYE 67
Query: 155 CPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAAL 202
C IC K+F + S H + KSY+ + + T +
Sbjct: 68 CNICAKRFMWRD--SFHRHV-TSCT-----KSYEAAKAEQNTTEASGP 107
Score = 68.2 bits (168), Expect = 3e-14
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 8/91 (8%)
Query: 515 CGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKC 574
CGK+F HK + RH+ +H RP+ C VC K+FK K + GH + +H G K Y+C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGI-----KPYEC 68
Query: 575 SLCPKAFTYLGALEDHQFVHTGQKTHLCTMC 605
++C K F + + H+ V + K++
Sbjct: 69 NICAKRFMWRDSF--HRHVTSCTKSYEAAKA 97
Score = 66.3 bits (163), Expect = 1e-13
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 325 CGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLC 384
CG F+ K HM H +P+ C +CGK+FK ++ ++ H ++H K Y+C++C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI---KPYECNIC 71
Query: 385 PRVFTHLAALEDHQFVHTGQKTRLCTMCPAIFASIGGLRS 424
+ F + H+ V + K+ G S
Sbjct: 72 AKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGPSS 109
Score = 60.9 bits (149), Expect = 1e-11
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 146 SHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDH 205
S +K + C C K F K + +H + H G + Y C +C K F L H
Sbjct: 4 GSSGDKLYPCQ-CGKSFTHKSQRDRHMSM-HLGLR-----PYGCGVCGKKFKMKHHLVGH 56
Query: 206 QYVHTGQKSHMCNLCSARFTCKGALLGHI 234
+HTG K + CN+C+ RF + + H+
Sbjct: 57 MKIHTGIKPYECNICAKRFMWRDSFHRHV 85
Score = 59.4 bits (145), Expect = 4e-11
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 9/108 (8%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFS 539
K + C C + F K ++H +H + C CGK F K+ L H+ IH+ +P+
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYE 67
Query: 540 CPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGAL 587
C +C K+F + H V KSY+ + + T
Sbjct: 68 CNICAKRFMWRDSF--HRH-VTSCT-----KSYEAAKAEQNTTEASGP 107
Score = 44.7 bits (107), Expect = 5e-06
Identities = 22/106 (20%), Positives = 36/106 (33%), Gaps = 34/106 (32%)
Query: 289 KPFKCDDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHSTQKPF 348
+P+ C CG F K +L HM H+ KP+
Sbjct: 36 RPYGCGV-----------------------------CGKKFKMKHHLVGHMKIHTGIKPY 66
Query: 349 SCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAAL 394
C++C KRF + H+ + KSY+ + + T +
Sbjct: 67 ECNICAKRFMWRDSF--HRHVTSCT---KSYEAAKAEQNTTEASGP 107
Score = 36.7 bits (86), Expect = 0.004
Identities = 25/143 (17%), Positives = 45/143 (31%), Gaps = 50/143 (34%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHGLKTQ 629
K Y C C K+FT+ + H +H G + + C +C + L H+KI H G
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI-HTG---- 62
Query: 630 QSCQSSHESKTCSVDEINKENEEGATIRKVKPHEDSKEYMALNKPFKCDDCDQRFLTKIL 689
KP++C+ C +RF+ +
Sbjct: 63 ------------------------------------------IKPYECNICAKRFMWRDS 80
Query: 690 LNKHKLLHFDKDYFSCNYCGKTF 712
++H + + +
Sbjct: 81 FHRH--VTSCTKSYEAAKAEQNT 101
Score = 36.3 bits (85), Expect = 0.006
Identities = 27/150 (18%), Positives = 44/150 (29%), Gaps = 50/150 (33%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCTMCPAIFASIGGLRSHMKIVHHGLKTQ 436
K Y C C + FTH + + H +H G + C +C F L HMKI H G
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI-HTG---- 62
Query: 437 QSCQSSHESKTCSVDEINKENEEGATIRKVKPHEDSKEYMALNKPFKCDDCDQRFLTKIL 496
KP++C+ C +RF+ +
Sbjct: 63 ------------------------------------------IKPYECNICAKRFMWRDS 80
Query: 497 LNKHKLLHFDKDYFSCNYCGKTFLHKYKLR 526
++H + + +
Sbjct: 81 FHRH--VTSCTKSYEAAKAEQNTTEASGPS 108
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 76.4 bits (189), Expect = 3e-17
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSY 379
C CG IF + +L H +SHS +KP+SC +CG RFKR++ + H R H V K Y
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH-DGSVGKPY 66
Query: 380 KCSLCPRVFTHLAALEDH-QFVHTGQKT 406
C C + F+ L H + VH+G +
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQVHSGPSS 94
Score = 75.6 bits (187), Expect = 5e-17
Identities = 38/90 (42%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 126 TCNLCGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYK 185
C +CG+ FR + L H +SHS EKP+SCP+C +FKRK +S H R H G K
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS-HDGSV---GK 64
Query: 186 SYKCSLCPKAFTHLAALEDH-QYVHTGQKS 214
Y C C K F+ L H + VH+G S
Sbjct: 65 PYICQSCGKGFSRPDHLNGHIKQVHSGPSS 94
Score = 69.8 bits (172), Expect = 5e-15
Identities = 36/91 (39%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVY 569
+C CGK F Y L RH + HS +P+SCPVC +FKRK ++ H R H G
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR-SHDGSV---G 63
Query: 570 KSYKCSLCPKAFTYLGALEDH-QFVHTGQKT 599
K Y C C K F+ L H + VH+G +
Sbjct: 64 KPYICQSCGKGFSRPDHLNGHIKQVHSGPSS 94
Score = 66.7 bits (164), Expect = 8e-14
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 8/98 (8%)
Query: 147 HSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQ 206
S +C IC K F+ + +++H H G+K Y C +C F + H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLS-HSGEK-----PYSCPVCGLRFKRKDRMSYHV 55
Query: 207 YVHTG--QKSHMCNLCSARFTCKGALLGHIKVLHEGYK 242
H G K ++C C F+ L GHIK +H G
Sbjct: 56 RSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 59.8 bits (146), Expect = 2e-11
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 342 HSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVH 401
S +C +CGK F+ + H+ H + K Y C +C F + H H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGE---KPYSCPVCGLRFKRKDRMSYHVRSH 58
Query: 402 TGQKTR--LCTMCPAIFASIGGLRSHMKIVHHGLKT 435
G + +C C F+ L H+K VH G +
Sbjct: 59 DGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPSS 94
Score = 51.7 bits (125), Expect = 1e-08
Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 8/99 (8%)
Query: 532 HSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQ 591
S + +C +C K F+ + H H G+ K Y C +C F + H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKL-SHSGE-----KPYSCPVCGLRFKRKDRMSYHV 55
Query: 592 FVHTG--QKTHLCTMCPASYATIGGLRSHIKIVHHGLKT 628
H G K ++C C ++ L HIK VH G +
Sbjct: 56 RSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPSS 94
Score = 46.7 bits (112), Expect = 8e-07
Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 46/130 (35%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYKRP 244
C +C K F + L H+ H+G+K + C +C RF K + H++ H+G
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS-HDG---- 60
Query: 245 QESCQSSHESKTCSVDEINKENEEGATIRKVKPHEDSKEYMALNKPFKCDDCFQCFLSKI 304
++ KP+ C C + F
Sbjct: 61 -----------------------------------------SVGKPYICQSCGKGFSRPD 79
Query: 305 LLNQHKKQMH 314
LN H KQ+H
Sbjct: 80 HLNGHIKQVH 89
Score = 42.9 bits (102), Expect = 2e-05
Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 29/87 (33%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHTEGHLTCNLCGQTFRQKFRLLNHMISHSTE--KPF 153
KP+ C CG F++K R+ H+ SH KP+
Sbjct: 34 KPYSCPV---------------------------CGLRFKRKDRMSYHVRSHDGSVGKPY 66
Query: 154 SCPICKKQFKRKHEVSKHDRIVHQGKK 180
C C K F R ++ H + VH G
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 39.8 bits (94), Expect = 2e-04
Identities = 20/88 (22%), Positives = 28/88 (31%), Gaps = 30/88 (34%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHS--TARP 537
KP+ C CG F K ++ H+ H +P
Sbjct: 34 KPYSCPV----------------------------CGLRFKRKDRMSYHVRSHDGSVGKP 65
Query: 538 FSCPVCKKQFKRKQDVAGHDRVVHQGKK 565
+ C C K F R + GH + VH G
Sbjct: 66 YICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 37.1 bits (87), Expect = 0.002
Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 32/85 (37%)
Query: 289 KPFKCDDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHS--TQK 346
KP+ C CGL F K + H+ SH K
Sbjct: 34 KPYSCPV-----------------------------CGLRFKRKDRMSYHVRSHDGSVGK 64
Query: 347 PFSCSLCGKRFKRENGVINH-QRLH 370
P+ C CGK F R + + H +++H
Sbjct: 65 PYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 34.8 bits (81), Expect = 0.015
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
C+ C + F LN+HKL H + +SC CG F
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRF 45
Score = 34.4 bits (80), Expect = 0.016
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLH---FDKDYFSCNYCGKTF 712
KP+ C C RF K ++ H H K Y C CGK F
Sbjct: 34 KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY-ICQSCGKGF 75
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 71.8 bits (177), Expect = 2e-15
Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 13/121 (10%)
Query: 96 KPFKCD--DCDQCFLTKILLNKHKLLHT-EGHLTCNL--CGQTFRQKFRLLNHMISHSTE 150
+PF C C++ + L H HT E C+ C + F + +L H H+
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 151 KPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSL--CPKAFTHLAALEDHQYV 208
KPF C C+++F R + H R H G+ K + C C K F L H +
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRT-HTGE-----KPFSCRWPSCQKKFARSDELVRHHNM 118
Query: 209 H 209
H
Sbjct: 119 H 119
Score = 68.7 bits (169), Expect = 3e-14
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 320 FTCN--SCGLIFSEKKYLRNHMISHSTQKPFSCSL--CGKRFKRENGVINHQRLHQTKKV 375
F C C + + +L+ H H+ +KP+ C C +RF R + + HQR H K
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVK- 65
Query: 376 YKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCTM--CPAIFASIGGLRSHMKI 428
++C C R F+ L+ H HTG+K C C FA L H +
Sbjct: 66 --PFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM 118
Score = 64.5 bits (158), Expect = 9e-13
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 12/121 (9%)
Query: 480 KPFKCD--DCDQRFLTKILLNKHKLLHFDKDYFSCNY--CGKTFLHKYKLRRHIVIHSTA 535
+PF C C++R+ L H H + + C++ C + F +L+RH H+
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 536 RPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSL--CPKAFTYLGALEDHQFV 593
+PF C C+++F R + H R H G+ K + C C K F L H +
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTR-THTGE-----KPFSCRWPSCQKKFARSDELVRHHNM 118
Query: 594 H 594
H
Sbjct: 119 H 119
Score = 64.1 bits (157), Expect = 1e-12
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 12/118 (10%)
Query: 510 FSCNY--CGKTFLHKYKLRRHIVIHSTARPFSCPV--CKKQFKRKQDVAGHDRVVHQGKK 565
F C Y C K + L+ H H+ +P+ C C+++F R + H R H G K
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-HTGVK 65
Query: 566 LIVYKSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCTM--CPASYATIGGLRSHIKI 621
++C C + F+ L+ H HTG+K C C +A L H +
Sbjct: 66 -----PFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM 118
Score = 61.0 bits (149), Expect = 2e-11
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 10/119 (8%)
Query: 289 KPFKCD--DCFQCFLSKILLNQHKKQMHFNKGGFTCNS--CGLIFSEKKYLRNHMISHST 344
+PF C C + + L H + H + + C+ C FS L+ H H+
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG 63
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSL--CPRVFTHLAALEDHQFVH 401
KPF C C ++F R + + H R H + K + C C + F L H +H
Sbjct: 64 VKPFQCKTCQRKFSRSDHLKTHTRTHTGE---KPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 60.2 bits (147), Expect = 3e-11
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 150 EKPFSC--PICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSL--CPKAFTHLAALEDH 205
++PF C P C K++ + + H R H G+K Y+C C + F+ L+ H
Sbjct: 4 KRPFMCAYPGCNKRYFKLSHLQMHSRK-HTGEK-----PYQCDFKDCERRFSRSDQLKRH 57
Query: 206 QYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYK 242
Q HTG K C C +F+ L H + H G K
Sbjct: 58 QRRHTGVKPFQCKTCQRKFSRSDHLKTHTRT-HTGEK 93
Score = 38.3 bits (90), Expect = 0.001
Identities = 31/149 (20%), Positives = 47/149 (31%), Gaps = 53/149 (35%)
Query: 570 KSYKCS--LCPKAFTYLGALEDHQFVHTGQKTHLCTM--CPASYATIGGLRSHIKIVHHG 625
+ + C+ C K + L L+ H HTG+K + C C ++ L+ H + H G
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-HTG 63
Query: 626 LKTQQSCQSSHESKTCSVDEINKENEEGATIRKVKPHEDSKEYMALNKPFKCDDCDQRFL 685
KPF+C C ++F
Sbjct: 64 ----------------------------------------------VKPFQCKTCQRKFS 77
Query: 686 TKILLNKHKLLHFDKDYFSCNY--CGKTF 712
L H H + FSC + C K F
Sbjct: 78 RSDHLKTHTRTHTGEKPFSCRWPSCQKKF 106
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 70.1 bits (173), Expect = 3e-15
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 6/85 (7%)
Query: 127 CNLCGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKS 186
C +CG++F++ L H++ HS +P+ C C K+F +K ++ KH I H G+ K
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFI-HTGE-----KP 57
Query: 187 YKCSLCPKAFTHLAALEDHQYVHTG 211
+KC +C KAF+ + L H HTG
Sbjct: 58 HKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 66.7 bits (164), Expect = 6e-14
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSY 379
F C CG F L H++ HS +P+ C CGKRF +++ + H +H T + K +
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIH-TGE--KPH 58
Query: 380 KCSLCPRVFTHLAALEDHQFVHTG 403
KC +C + F+ + L H HTG
Sbjct: 59 KCQVCGKAFSQSSNLITHSRKHTG 82
Score = 65.5 bits (161), Expect = 1e-13
Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVY 569
F C CGK+F L H++IHS RP+ C C K+F +K D+ H +H G+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTF-IHTGE----- 55
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTG 596
K +KC +C KAF+ L H HTG
Sbjct: 56 KPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 53.6 bits (130), Expect = 2e-09
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 291 FKCDDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHSTQKPFSC 350
F C C + F L+ H +H + + C CG F +K ++ H H+ +KP C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 351 SLCGKRFKRENGVINHQRLH 370
+CGK F + + +I H R H
Sbjct: 61 QVCGKAFSQSSNLITHSRKH 80
Score = 51.7 bits (125), Expect = 1e-08
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 348 FSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTR 407
F C +CGK FKR + + H +H + Y C C + F + ++ H F+HTG+K
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTR---PYPCQYCGKRFHQKSDMKKHTFIHTGEKPH 58
Query: 408 LCTMCPAIFASIGGLRSHMKI 428
C +C F+ L +H +
Sbjct: 59 KCQVCGKAFSQSSNLITHSRK 79
Score = 45.9 bits (110), Expect = 1e-06
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 186 SYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCNLCSARFTCKGALLGH 233
S+ C +C K+F + L H +H+ + + C C RF K + H
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH 48
Score = 39.3 bits (93), Expect = 2e-04
Identities = 17/53 (32%), Positives = 23/53 (43%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIH 532
+P+ C C +RF K + KH +H + C CGK F L H H
Sbjct: 28 RPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
Score = 37.0 bits (87), Expect = 0.002
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 571 SYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCTMC 605
S+ C +C K+F L H +H+ + + C C
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYC 35
Score = 35.5 bits (83), Expect = 0.006
Identities = 12/51 (23%), Positives = 21/51 (41%)
Query: 378 SYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCTMCPAIFASIGGLRSHMKI 428
S+ C +C + F + L H +H+ + C C F ++ H I
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFI 51
Score = 32.0 bits (74), Expect = 0.092
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
+P+ C C +RF K + KH +H + C CGK F
Sbjct: 28 RPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAF 67
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 67.9 bits (167), Expect = 3e-14
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 10/91 (10%)
Query: 126 TCNLCGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYK 185
C +C + F + L H+ +H+ EKPF+C IC ++F R E +H I
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI-QHILP----- 58
Query: 186 SYKCSLCPKAFT---HLAALEDHQYVHTGQK 213
+ + HL G++
Sbjct: 59 -ILEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 66.0 bits (162), Expect = 1e-13
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSY 379
F C C FS +L H+ +H+ +KPF+C +CG++F R + H+ +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HI---LPI 59
Query: 380 KCSLCPRVFT---HLAALEDHQFVHTGQK 405
+ + HL G++
Sbjct: 60 LEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 59.8 bits (146), Expect = 2e-11
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 10/92 (10%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVY 569
F C C + F L HI H+ +PF+C +C ++F R + H +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRD-IQHILP---- 58
Query: 570 KSYKCSLCPKAFTYLGALEDHQF---VHTGQK 598
+ + LE+ G++
Sbjct: 59 --ILEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 56.4 bits (137), Expect = 3e-10
Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 151 KPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHT 210
KPF C IC + F R ++ H R H G+ K + C +C + F + H+ +
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRT-HTGE-----KPFACDICGRKFARSDERKRHRDIQH 55
Query: 211 GQKSHMCNLCSARFTCKGALLGHIK 235
+ + + L +
Sbjct: 56 -ILPILEDKVEELLSKNYHLENEVA 79
Score = 55.2 bits (134), Expect = 8e-10
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 3/88 (3%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFS 539
KPF+C C + F L H H + F+C+ CG+ F + +RH I P
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILPIL 60
Query: 540 CPVCKKQFKRKQDVAGHDRV--VHQGKK 565
++ + + G++
Sbjct: 61 EDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 48.3 bits (116), Expect = 2e-07
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 346 KPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
KPF C +C + F R + + H R H T + K + C +C R F + H+ +
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTH-TGE--KPFACDICGRKFARSDERKRHRDIQH-IL 57
Query: 406 TRLCTMCPAIFASIGGLRSHMK 427
L + + L + +
Sbjct: 58 PILEDKVEELLSKNYHLENEVA 79
Score = 46.7 bits (112), Expect = 7e-07
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHTEGHLTCNLCGQTFRQKFRLLNHMIS---HSTEK 151
KPF CD C + F +H+ + + + + + + L N + E+
Sbjct: 30 KPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 46.0 bits (110), Expect = 1e-06
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHE 239
K ++C +C + F+ L H HTG+K C++C +F H + H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI 56
Score = 45.6 bits (109), Expect = 2e-06
Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 7/85 (8%)
Query: 536 RPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQFVHT 595
+PF C +C + F R + H R H G+ K + C +C + F + H+ +
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIR-THTGE-----KPFACDICGRKFARSDERKRHRDIQH 55
Query: 596 GQKTHLCTMCPASYATIGGLRSHIK 620
L + L + +
Sbjct: 56 -ILPILEDKVEELLSKNYHLENEVA 79
Score = 42.1 bits (100), Expect = 3e-05
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCTMCPASYATIGGLRSHIKI 621
K ++C +C + F+ L H HTG+K C +C +A + H I
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 42.1 bits (100), Expect = 3e-05
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCTMCPAIFASIGGLRSHMKI 428
K ++C +C R F+ L H HTG+K C +C FA + H I
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 36.3 bits (85), Expect = 0.003
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
KPF CD C ++F +H+ + + +
Sbjct: 30 KPFACDICGRKFARSDERKRHRDIQHILPI-LEDKVEELL 68
Score = 32.1 bits (74), Expect = 0.087
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
KPF+C C + F L H H + F+C+ CG+ F
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 66.3 bits (163), Expect = 8e-14
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 320 FTCNS--CGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYK 377
+ C C FS+ L H+ H+ QKPF C +C + F R + + H R H T + K
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH-TGE--K 61
Query: 378 SYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+ C +C R F + H +H QK
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 65.2 bits (160), Expect = 2e-13
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 150 EKPFSCPI--CKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQY 207
E+P++CP+ C ++F + +++H RI H G+K ++C +C + F+ L H
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRI-HTGQK-----PFQCRICMRNFSRSDHLTTHIR 55
Query: 208 VHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYK 242
HTG+K C++C +F H K+ H K
Sbjct: 56 THTGEKPFACDICGRKFARSDERKRHTKI-HLRQK 89
Score = 64.4 bits (158), Expect = 4e-13
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 96 KPFKC--DDCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKP 152
+P+ C + CD+ F L +H +HT + C +C + F + L H+ +H+ EKP
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 153 FSCPICKKQFKRKHEVSKHDRIVHQGKK 180
F+C IC ++F R E +H +I H +K
Sbjct: 63 FACDICGRKFARSDERKRHTKI-HLRQK 89
Score = 57.5 bits (140), Expect = 1e-10
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 346 KPFSCSL--CGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTG 403
+P++C + C +RF + + H R+H +K ++C +C R F+ L H HTG
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQK---PFQCRICMRNFSRSDHLTTHIRTHTG 59
Query: 404 QKTRLCTMCPAIFASIGGLRSHMKI 428
+K C +C FA + H KI
Sbjct: 60 EKPFACDICGRKFARSDERKRHTKI 84
Score = 56.3 bits (137), Expect = 3e-10
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 289 KPFKC--DDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHSTQK 346
+P+ C + C + F L +H + +H + F C C FS +L H+ +H+ +K
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 347 PFSCSLCGKRFKRENGVINHQRLH 370
PF+C +CG++F R + H ++H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 55.6 bits (135), Expect = 6e-10
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 480 KPFKC--DDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARP 537
+P+ C + CD+RF L +H +H + F C C + F L HI H+ +P
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 538 FSCPVCKKQFKRKQDVAGHDRVVHQGKK 565
F+C +C ++F R + H + +H +K
Sbjct: 63 FACDICGRKFARSDERKRHTK-IHLRQK 89
Score = 52.5 bits (127), Expect = 7e-09
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 536 RPFSCPV--CKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQFV 593
RP++CPV C ++F + + H R+ H G+K ++C +C + F+ L H
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRI-HTGQK-----PFQCRICMRNFSRSDHLTTHIRT 56
Query: 594 HTGQKTHLCTMCPASYATIGGLRSHIKI 621
HTG+K C +C +A + H KI
Sbjct: 57 HTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 39.0 bits (92), Expect = 4e-04
Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 49/130 (37%)
Query: 570 KSYKCSL--CPKAFTYLGALEDHQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHGLK 627
+ Y C + C + F+ G+L H +HTGQK C +C +++ L +HI+ H G
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT-HTG-- 59
Query: 628 TQQSCQSSHESKTCSVDEINKENEEGATIRKVKPHEDSKEYMALNKPFKCDDCDQRFLTK 687
KPF CD C ++F
Sbjct: 60 --------------------------------------------EKPFACDICGRKFARS 75
Query: 688 ILLNKHKLLH 697
+H +H
Sbjct: 76 DERKRHTKIH 85
Score = 32.8 bits (76), Expect = 0.058
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
KPF+C C + F L H H + F+C+ CG+ F
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 72
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 65.6 bits (161), Expect = 1e-13
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Query: 140 LLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHL 199
+ +H+ EKP++C C K F++K + H + + + V ++ CS C K FT
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKR-YHDPNF-VPAAFVCSKCGKTFTRR 60
Query: 200 AALEDHQYVHTGQKSHMCNLC 220
+ H G
Sbjct: 61 NTMARHADNCAGPDGVEGENS 81
Score = 63.3 bits (155), Expect = 1e-12
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 335 LRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQT-KKVYKSYKCSLCPRVFTHLAA 393
+ +H+ +KP++CS C K F+++ + H + + V ++ CS C + FT
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT 62
Query: 394 LEDHQFVHTGQKTRLCTMC 412
+ H G
Sbjct: 63 MARHADNCAGPDGVEGENS 81
Score = 58.7 bits (143), Expect = 4e-11
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Query: 525 LRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYL 584
H+ +P++C C K F++KQ + H + + V ++ CS C K FT
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKR-YHDPN-FVPAAFVCSKCGKTFTRR 60
Query: 585 GALEDHQFVHTGQKTHLCTMC 605
+ H G
Sbjct: 61 NTMARHADNCAGPDGVEGENS 81
Score = 58.7 bits (143), Expect = 4e-11
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHTEGHL-----TCNLCGQTFRQKFRLLNHMISHSTE 150
KP+ C CD+ F K LL+ H + + + C+ CG+TF ++ + H + +
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGP 73
Query: 151 KPFSCPICKKQF 162
Sbjct: 74 DGVEGENSGPSS 85
Score = 57.2 bits (139), Expect = 1e-10
Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 11/89 (12%)
Query: 113 LNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTE----KPFSCPICKKQFKRKHE 167
HT E C+ C +TFRQK L H + F C C K F R++
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT 62
Query: 168 VSKHDRIVHQGKKYNVYKSYKCSLCPKAF 196
+++H G + +
Sbjct: 63 MARHADN-CAGPD-----GVEGENSGPSS 85
Score = 52.9 bits (128), Expect = 4e-09
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLHFDKDY----FSCNYCGKTFLHKYKLRRHIVIHSTA 535
KP+ C CD+ F K LL+ H + D ++ F C+ CGKTF + + RH +
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGP 73
Query: 536 RPFSCPVCKKQF 547
Sbjct: 74 DGVEGENSGPSS 85
Score = 52.9 bits (128), Expect = 4e-09
Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 10/76 (13%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIH----STARPFSCPVCKKQFKRKQDVAGHDRVVHQGKK 565
++C++C KTF K L H + F C C K F R+ +A H G
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN-CAGPD 74
Query: 566 LIVYKSYKCSLCPKAF 581
+ +
Sbjct: 75 -----GVEGENSGPSS 85
Score = 52.5 bits (127), Expect = 5e-09
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 289 KPFKCDDCFQCFLSKILLNQHKKQMHFNKGG---FTCNSCGLIFSEKKYLRNHMISHSTQ 345
KP+ C C + F K LL+ H K+ H F C+ CG F+ + + H + +
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGP 73
Query: 346 KPFSCSLCGKRF 357
G
Sbjct: 74 DGVEGENSGPSS 85
Score = 42.5 bits (101), Expect = 2e-05
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 10/68 (14%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTG----QKSHMCNLCSARFT 225
R H G+K Y CS C K F L+ H + + +C+ C FT
Sbjct: 5 SSGRT-HTGEK-----PYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFT 58
Query: 226 CKGALLGH 233
+ + H
Sbjct: 59 RRNTMARH 66
Score = 39.4 bits (93), Expect = 2e-04
Identities = 18/128 (14%), Positives = 30/128 (23%), Gaps = 43/128 (33%)
Query: 585 GALEDHQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHGLKTQQSCQSSHESKTCSVD 644
G+ HTG+K + C+ C ++ L H K +H
Sbjct: 1 GSSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKR-YHDPNFVP-------------- 45
Query: 645 EINKENEEGATIRKVKPHEDSKEYMALNKPFKCDDCDQRFLTKILLNKHKLLHFDKDYFS 704
F C C + F + + +H D
Sbjct: 46 ----------------------------AAFVCSKCGKTFTRRNTMARHADNCAGPDGVE 77
Query: 705 CNYCGKTF 712
G +
Sbjct: 78 GENSGPSS 85
Score = 39.0 bits (92), Expect = 4e-04
Identities = 18/126 (14%), Positives = 26/126 (20%), Gaps = 43/126 (34%)
Query: 394 LEDHQFVHTGQKTRLCTMCPAIFASIGGLRSHMKIVHHGLKTQQSCQSSHESKTCSVDEI 453
HTG+K C+ C F L H K +H
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKR-YHDPNFVP---------------- 45
Query: 454 NKENEEGATIRKVKPHEDSKEYMALNKPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCN 513
F C C + F + + +H D
Sbjct: 46 --------------------------AAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGE 79
Query: 514 YCGKTF 519
G +
Sbjct: 80 NSGPSS 85
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 63.3 bits (155), Expect = 6e-13
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Query: 335 LRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAAL 394
+ +HS +KP+ C +C RF + + H + + C C V + L
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQK-HTENVAKFHCPHCDTVIARKSDL 61
Query: 395 EDHQ-FVHTGQK 405
H H+
Sbjct: 62 GVHLRKQHSYSG 73
Score = 62.5 bits (153), Expect = 1e-12
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 5/75 (6%)
Query: 140 LLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHL 199
+ +HS EKP+ C IC +F + + H + + C C
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQ-KHTEN---VAKFHCPHCDTVIARK 58
Query: 200 AALEDHQ-YVHTGQK 213
+ L H H+
Sbjct: 59 SDLGVHLRKQHSYSG 73
Score = 57.1 bits (139), Expect = 1e-10
Identities = 12/76 (15%), Positives = 21/76 (27%), Gaps = 5/76 (6%)
Query: 524 KLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTY 583
HS +P+ C +C +F + + H + + C C
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHIL-QKHTEN---VAKFHCPHCDTVIAR 57
Query: 584 LGALEDHQ-FVHTGQK 598
L H H+
Sbjct: 58 KSDLGVHLRKQHSYSG 73
Score = 56.0 bits (136), Expect = 2e-10
Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHS--TARPFSCPVCKKQFKRKQDVAGHDRVVHQGKK 565
+ C C F ++ HI+ F CP C RK D+ H R H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSG 73
Score = 53.7 bits (130), Expect = 2e-09
Identities = 13/60 (21%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTG--QKSHMCNLCSARFTCKGALLGHIKVLHEGYK 242
K Y+C +C FT ++ H C C K L H++ H
Sbjct: 14 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSG 73
Score = 51.8 bits (125), Expect = 9e-09
Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHTEGHL---TCNLCGQTFRQKFRLLNHM-ISHSTEK 151
KP++C C F + H L ++ C C +K L H+ HS
Sbjct: 14 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSG 73
Query: 152 PFS 154
P S
Sbjct: 74 PSS 76
Score = 49.4 bits (119), Expect = 6e-08
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLHFDKDY--FSCNYCGKTFLHKYKLRRHI-VIHSTAR 536
KP++C C RF + H L ++ F C +C K L H+ HS +
Sbjct: 14 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSG 73
Query: 537 PFS 539
P S
Sbjct: 74 PSS 76
Score = 49.4 bits (119), Expect = 7e-08
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTG--QKTHLCTMCPASYATIGGLRSHIKIVHHGLK 627
K Y+C +C FT G ++ H C C A L H++ H
Sbjct: 14 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSG 73
Score = 47.9 bits (115), Expect = 2e-07
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 5/71 (7%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTR--LCTMCPAIFASIGGLR 423
R H + + K Y+C +C FT ++ H + C C + A L
Sbjct: 6 SGRTH-SGE--KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62
Query: 424 SHMKIVHHGLK 434
H++ H
Sbjct: 63 VHLRKQHSYSG 73
Score = 41.7 bits (99), Expect = 3e-05
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 289 KPFKCDDCFQCFLSKILLNQHKKQMHFNKGG--FTCNSCGLIFSEKKYLRNHM-ISHSTQ 345
KP++C C F + H Q + F C C + + K L H+ HS
Sbjct: 14 KPYECYICHARFTQSGTMKMHILQ-KHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYS 72
Query: 346 KPFS 349
P S
Sbjct: 73 GPSS 76
Score = 39.0 bits (92), Expect = 2e-04
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLHFDKDY--FSCNYCGKTF 712
KP++C C RF + H L ++ F C +C
Sbjct: 14 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVI 55
Score = 36.7 bits (86), Expect = 0.002
Identities = 19/113 (16%), Positives = 26/113 (23%), Gaps = 46/113 (40%)
Query: 202 LEDHQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYKRPQESCQSSHESKTCSVDE 261
H+G+K + C +C ARFT G + HI
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQ-KHTENV------------------ 43
Query: 262 INKENEEGATIRKVKPHEDSKEYMALNKPFKCDDCFQCFLSKILLNQHKKQMH 314
F C C K L H ++ H
Sbjct: 44 ---------------------------AKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 35.2 bits (82), Expect = 0.006
Identities = 20/109 (18%), Positives = 28/109 (25%), Gaps = 45/109 (41%)
Query: 585 GALEDHQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHGLKTQQSCQSSHESKTCSVD 644
G+ H+G+K + C +C A + G ++ HI H
Sbjct: 1 GSSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQ-KHT------------------- 40
Query: 645 EINKENEEGATIRKVKPHEDSKEYMALNKPFKCDDCDQRFLTKILLNKH 693
EN F C CD K L H
Sbjct: 41 ----ENV---------------------AKFHCPHCDTVIARKSDLGVH 64
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 59.8 bits (146), Expect = 1e-11
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 140 LLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHL 199
HS EKP+ C C K F R + +H R+ H G+K YKC C KAF+
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRV-HTGEK-----PYKCLECGKAFSQN 55
Query: 200 AALEDHQYVHTGQKSH 215
+ L +HQ +HT S
Sbjct: 56 SGLINHQRIHTSGPSS 71
Score = 57.9 bits (141), Expect = 5e-11
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 335 LRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAAL 394
HS +KP+ C CGK F R + ++ HQR+H + K YKC C + F+ + L
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE---KPYKCLECGKAFSQNSGL 58
Query: 395 EDHQFVHTGQK 405
+HQ +HT
Sbjct: 59 INHQRIHTSGP 69
Score = 54.0 bits (131), Expect = 1e-09
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 525 LRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYL 584
IHS +P+ C C K F R + H RV H G+K YKC C KAF+
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRV-HTGEK-----PYKCLECGKAFSQN 55
Query: 585 GALEDHQFVHTGQKTH 600
L +HQ +HT +
Sbjct: 56 SGLINHQRIHTSGPSS 71
Score = 51.3 bits (124), Expect = 1e-08
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVY 376
+ C CG FS L H H+ +KP+ C CGK F + +G+INHQR+H +
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 50.5 bits (122), Expect = 2e-08
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 113 LNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKH 171
+ +H+ E C CG+ F + L+ H H+ EKP+ C C K F + + H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 172 DRIVHQGKK 180
RI H
Sbjct: 62 QRI-HTSGP 69
Score = 49.0 bits (118), Expect = 6e-08
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 169 SKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCNLCSARFTCKG 228
S I H G+K Y C C KAF+ + L HQ VHTG+K + C C F+
Sbjct: 3 SGSSGI-HSGEK-----PYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNS 56
Query: 229 ALLGH 233
L+ H
Sbjct: 57 GLINH 61
Score = 47.1 bits (113), Expect = 3e-07
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPF 153
KP+ C +C + F +L +H+ +HT E C CG+ F Q L+NH H++
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 45.2 bits (108), Expect = 2e-06
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 497 LNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGH 556
+ +H + + C CGK F L +H +H+ +P+ C C K F + + H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 557 DRVVHQGKK 565
R +H
Sbjct: 62 QR-IHTSGP 69
Score = 42.1 bits (100), Expect = 2e-05
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 362 GVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCTMCPAIFASIGG 421
G +H +K Y C C + F+ + L HQ VHTG+K C C F+ G
Sbjct: 1 GSSGSSGIHSGEK---PYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSG 57
Query: 422 LRSHMKIVHHGLK 434
L +H +I H
Sbjct: 58 LINHQRI-HTSGP 69
Score = 41.7 bits (99), Expect = 3e-05
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPF 538
KP+ C +C + F +L +H+ +H + + C CGK F L H IH++
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Score = 39.0 bits (92), Expect = 2e-04
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHGLK 627
K Y C C KAF+ L HQ VHTG+K + C C +++ GL +H +I H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI-HTSGP 69
Score = 33.2 bits (77), Expect = 0.030
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
KP+ C +C + F +L +H+ +H + + C CGK F
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAF 52
Score = 30.1 bits (69), Expect = 0.34
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 202 LEDHQYVHTGQKSHMCNLCSARFTCKGALLGH 233
+H+G+K + C C F+ L+ H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQH 33
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 59.8 bits (146), Expect = 1e-11
Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 136 QKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKA 195
+ + C C K F ++SKH R H G+ K YKC C KA
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRT-HTGE-----KPYKCDECGKA 55
Query: 196 FTHLAALEDHQYVHTGQK 213
F + L H VHTG
Sbjct: 56 FIQRSHLIGHHRVHTGSG 73
Score = 56.3 bits (137), Expect = 2e-10
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 335 LRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAAL 394
++ + C CGK F + + H+R H + K YKC C + F + L
Sbjct: 6 SGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE---KPYKCDECGKAFIQRSHL 62
Query: 395 EDHQFVHTGQK 405
H VHTG
Sbjct: 63 IGHHRVHTGSG 73
Score = 52.8 bits (128), Expect = 3e-09
Identities = 25/78 (32%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 521 HKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKA 580
R R + C C K F D++ H R H G+ K YKC C KA
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRR-THTGE-----KPYKCDECGKA 55
Query: 581 FTYLGALEDHQFVHTGQK 598
F L H VHTG
Sbjct: 56 FIQRSHLIGHHRVHTGSG 73
Score = 49.0 bits (118), Expect = 7e-08
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYK 377
+ C+ CG FS L H +H+ +KP+ C CGK F + + +I H R+H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Score = 48.2 bits (116), Expect = 2e-07
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 169 SKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCNLCSARFTCKG 228
+ + + ++ YKC C K+F+H + L H+ HTG+K + C+ C F +
Sbjct: 7 GRSEWQ-QRERR-----RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRS 60
Query: 229 ALLGH 233
L+GH
Sbjct: 61 HLIGH 65
Score = 47.8 bits (115), Expect = 2e-07
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 113 LNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKH 171
+ + C+ CG++F L H +H+ EKP+ C C K F ++ + H
Sbjct: 6 SGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Query: 172 DRIVHQGKK 180
R+ H G
Sbjct: 66 HRV-HTGSG 73
Score = 45.1 bits (108), Expect = 2e-06
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPF 153
+ +KCD+C + F L+KH+ HT E C+ CG+ F Q+ L+ H H+ P
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 44.4 bits (106), Expect = 3e-06
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 497 LNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGH 556
+ + ++ + C+ CGK+F H L +H H+ +P+ C C K F ++ + GH
Sbjct: 6 SGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Query: 557 DRVVHQGKK 565
R VH G
Sbjct: 66 HR-VHTGSG 73
Score = 38.6 bits (91), Expect = 4e-04
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPF 538
+ +KCD+C + F L+KH+ H + + C+ CGK F+ + L H +H+ + P
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 37.4 bits (88), Expect = 9e-04
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCTMC 605
+ YKC C K+F++ L H+ HTG+K + C C
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDEC 52
Score = 31.3 bits (72), Expect = 0.15
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
+ +KCD+C + F L+KH+ H + + C+ CGK F
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAF 56
Score = 29.3 bits (67), Expect = 0.74
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 202 LEDHQYVHTGQKSHMCNLCSARFTCKGALLGH 233
++ ++ + C+ C F+ L H
Sbjct: 6 SGRSEWQQRERRRYKCDECGKSFSHSSDLSKH 37
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 59.4 bits (145), Expect = 2e-11
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 334 YLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAA 393
+ +H + KP+ C C F+ + + +H+ +H + K Y+C++C F A
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGE---KPYRCNICGAQFNRPAN 60
Query: 394 LEDHQFVHTGQK 405
L+ H +H+G+K
Sbjct: 61 LKTHTRIHSGEK 72
Score = 52.8 bits (128), Expect = 3e-09
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 113 LNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKH 171
+ H + + C+ C +FR K L +H H+ EKP+ C IC QF R + H
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Query: 172 DRIVHQGKK 180
RI H G+K
Sbjct: 65 TRI-HSGEK 72
Score = 51.3 bits (124), Expect = 1e-08
Identities = 26/59 (44%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPF 153
KP+KCD C F K L HK +HT E CN+CG F + L H HS EKP+
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 50.9 bits (123), Expect = 2e-08
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCNLCSARFTCKGA 229
H + K YKC C +F + L H+ VHTG+K + CN+C A+F
Sbjct: 7 HHSHM-THSDK-----PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPAN 60
Query: 230 LLGH 233
L H
Sbjct: 61 LKTH 64
Score = 49.8 bits (120), Expect = 4e-08
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 306 LNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVIN 365
+ H M + + C+ C F K L +H H+ +KP+ C++CG +F R +
Sbjct: 5 HHHHSH-MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT 63
Query: 366 HQRLH 370
H R+H
Sbjct: 64 HTRIH 68
Score = 44.4 bits (106), Expect = 3e-06
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 497 LNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGH 556
+ H + + C+ C +F +K L H +H+ +P+ C +C QF R ++ H
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Query: 557 DRVVHQGKK 565
R +H G+K
Sbjct: 65 TR-IHSGEK 72
Score = 43.2 bits (103), Expect = 8e-06
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHGLK 627
K YKC C +F Y G L H+ VHTG+K + C +C A + L++H +H G K
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH-TRIHSGEK 72
Score = 42.4 bits (101), Expect = 2e-05
Identities = 23/59 (38%), Positives = 30/59 (50%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPF 538
KP+KCD C F K L HK +H + + CN CG F L+ H IHS +P+
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 40.1 bits (95), Expect = 1e-04
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 289 KPFKCDDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHSTQKPF 348
KP+KCD C F K L HK +H + + CN CG F+ L+ H HS +KP+
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKT-VHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
Score = 34.0 bits (79), Expect = 0.014
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
KP+KCD C F K L HK +H + + CN CG F
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQF 55
Score = 32.4 bits (75), Expect = 0.059
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 202 LEDHQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYK 242
H ++ K + C+ C A F KG L H K +H G K
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASH-KTVHTGEK 44
Score = 26.6 bits (60), Expect = 5.5
Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 394 LEDHQFVHTGQKTRLCTMCPAIFASIGGLRSHMKIVHHGLK 434
H + K C C A F G L SH + H G K
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTV-HTGEK 44
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 59.0 bits (143), Expect = 2e-11
Identities = 12/73 (16%), Positives = 22/73 (30%)
Query: 342 HSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVH 401
S C +CG +++ + HQR H + C C + F ++ H+
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 402 TGQKTRLCTMCPA 414
Sbjct: 62 HPALLLAPQESSG 74
Score = 58.6 bits (142), Expect = 3e-11
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 125 LTCNLCGQTFRQKFRLLNHMISHST---EKPFSCPICKKQFKRKHEVSKHDRIVHQGKKY 181
L C +CG T RQK L H H+ F C C K+F++ V+ H H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Score = 54.7 bits (132), Expect = 8e-10
Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 4/69 (5%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHTEGH----LTCNLCGQTFRQKFRLLNHMISHSTEK 151
+C+ C K LN H+ H E C CG+ F + + H
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65
Query: 152 PFSCPICKK 160
+
Sbjct: 66 LLAPQESSG 74
Score = 53.9 bits (130), Expect = 2e-09
Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLHFDKDY---FSCNYCGKTFLHKYKLRRHIVIHSTAR 536
+C+ C K LN H+ H + F C +CGK F + H A
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65
Query: 537 PFSCPVCKK 545
+
Sbjct: 66 LLAPQESSG 74
Score = 51.3 bits (123), Expect = 1e-08
Identities = 18/71 (25%), Positives = 23/71 (32%), Gaps = 4/71 (5%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHT---GQKSHMCNLCSARFTCKGALLGHIKVLHEGY 241
+C +C A+L HQ H C C RF ++ H H
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65
Query: 242 K-RPQESCQSS 251
PQES S
Sbjct: 66 LLAPQESSGPS 76
Score = 47.8 bits (114), Expect = 2e-07
Identities = 16/73 (21%), Positives = 22/73 (30%), Gaps = 5/73 (6%)
Query: 289 KPFKCDDCFQCFLSKILLNQHKKQMHFNKGG---FTCNSCGLIFSEKKYLRNHM-ISHST 344
+C+ C K LN H++ H F C CG F + + H SH
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPA 64
Query: 345 QKPFSCSLCGKRF 357
G
Sbjct: 65 LLLAPQESSGPSS 77
Score = 47.4 bits (113), Expect = 3e-07
Identities = 12/76 (15%), Positives = 21/76 (27%), Gaps = 3/76 (3%)
Query: 532 HSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQ 591
S + C +C ++K + H R H + C C K F ++ H+
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRK-HAETV--AALRFPCEFCGKRFEKPDSVAAHR 58
Query: 592 FVHTGQKTHLCTMCPA 607
Sbjct: 59 SKSHPALLLAPQESSG 74
Score = 45.5 bits (108), Expect = 1e-06
Identities = 13/72 (18%), Positives = 20/72 (27%), Gaps = 4/72 (5%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHT---GQKTHLCTMCPASYATIGGLRSHIKIVHHGL 626
+C +C +L HQ H C C + + +H H
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK-SHPA 64
Query: 627 KTQQSCQSSHES 638
+SS S
Sbjct: 65 LLLAPQESSGPS 76
Score = 40.1 bits (94), Expect = 1e-04
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLHFDKDY---FSCNYCGKTF 712
+C+ C K LN H+ H + F C +CGK F
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRF 48
Score = 33.9 bits (78), Expect = 0.017
Identities = 16/118 (13%), Positives = 26/118 (22%), Gaps = 45/118 (38%)
Query: 209 HTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYKRPQESCQSSHESKTCSVDEINKENEE 268
+G C +C K +L H + H +V
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRK---------------H---AETVAA------- 36
Query: 269 GATIRKVKPHEDSKEYMALNKPFKCDDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCG 326
F C+ C + F + H+ + H S G
Sbjct: 37 --------------------LRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSG 74
Score = 33.5 bits (77), Expect = 0.023
Identities = 7/41 (17%), Positives = 12/41 (29%), Gaps = 1/41 (2%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLHF-DKDYFSCNYCGKTF 712
F C+ C +RF + H+ G +
Sbjct: 37 LRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSGPSS 77
Score = 30.1 bits (68), Expect = 0.43
Identities = 14/120 (11%), Positives = 23/120 (19%), Gaps = 45/120 (37%)
Query: 401 HTGQKTRLCTMCPAIFASIGGLRSHMKIVHHGLKTQQSCQSSHESKTCSVDEINKENEEG 460
+G C +C L H + H +V
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRK-H----------------AETVAA-------- 36
Query: 461 ATIRKVKPHEDSKEYMALNKPFKCDDCDQRFLTKILLNKHKLLHF-DKDYFSCNYCGKTF 519
F C+ C +RF + H+ G +
Sbjct: 37 -------------------LRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSGPSS 77
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 59.1 bits (144), Expect = 3e-11
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 9/82 (10%)
Query: 147 HSTEKPFSCPI--CKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS--LCPKAFTHLAAL 202
S C C + F + ++ H + H +K S+ C C K+F L
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQK-----SFSCPEPACGKSFNFKKHL 56
Query: 203 EDHQYVHTGQKSHMCNLCSARF 224
++H +H+ + ++C
Sbjct: 57 KEHMKLHSDTRDYICEFSGPSS 78
Score = 57.2 bits (139), Expect = 1e-10
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 289 KPFKCD--DCFQCFLSKILLNQHKKQMHFNKGGFTCN--SCGLIFSEKKYLRNHMISHST 344
CD C + F ++ LN HKK H ++ F+C +CG F+ KK+L+ HM HS
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSD 65
Query: 345 QKPFSCSLCGKRF 357
+ + C G
Sbjct: 66 TRDYICEFSGPSS 78
Score = 55.2 bits (134), Expect = 5e-10
Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Query: 96 KPFKCD--DCDQCFLTKILLNKHK-LLHT-EGHLTCN--LCGQTFRQKFRLLNHMISHST 149
CD C + F + LN HK H + +C CG++F K L HM HS
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSD 65
Query: 150 EKPFSCPICKKQF 162
+ + C
Sbjct: 66 TRDYICEFSGPSS 78
Score = 51.4 bits (124), Expect = 1e-08
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 320 FTCNS--CGLIFSEKKYLRNHM-ISHSTQKPFSCS--LCGKRFKRENGVINHQRLHQTKK 374
C+ CG IFS ++YL +H H QK FSC CGK F + + H +LH
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDT- 66
Query: 375 VYKSYKCSLCPRVF 388
+ Y C
Sbjct: 67 --RDYICEFSGPSS 78
Score = 51.0 bits (123), Expect = 2e-08
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 532 HSTARPFSCPV--CKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS--LCPKAFTYLGAL 587
S + C C + F +Q + H + H +K S+ C C K+F + L
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQK-----SFSCPEPACGKSFNFKKHL 56
Query: 588 EDHQFVHTGQKTHLCTMC 605
++H +H+ + ++C
Sbjct: 57 KEHMKLHSDTRDYICEFS 74
Score = 49.9 bits (120), Expect = 5e-08
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 480 KPFKCD--DCDQRFLTKILLNKHK-LLHFDKDYFSCNY--CGKTFLHKYKLRRHIVIHST 534
CD C + F + LN HK H + FSC CGK+F K L+ H+ +HS
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSD 65
Query: 535 ARPFSCPVCKKQF 547
R + C
Sbjct: 66 TRDYICEFSGPSS 78
Score = 49.5 bits (119), Expect = 5e-08
Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 342 HSTQKPFSCSL--CGKRFKRENGVINHQRLHQTKKVYKSYKCS--LCPRVFTHLAALEDH 397
S C CG+ F + +H++ + KS+ C C + F L++H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQ--KSFSCPEPACGKSFNFKKHLKEH 59
Query: 398 QFVHTGQKTRLCTMC 412
+H+ + +C
Sbjct: 60 MKLHSDTRDYICEFS 74
Score = 47.9 bits (115), Expect = 2e-07
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 11/77 (14%)
Query: 510 FSCNY--CGKTFLHKYKLRRHI-VIHSTARPFSCP--VCKKQFKRKQDVAGHDRVVHQGK 564
C++ CG+ F ++ L H H + FSCP C K F K+ + H ++ H
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL-HSDT 66
Query: 565 KLIVYKSYKCSLCPKAF 581
+ Y C +
Sbjct: 67 R-----DYICEFSGPSS 78
Score = 36.8 bits (86), Expect = 0.002
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 673 KPFKCD--DCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
K F C C + F K L +H LH D + C + G +
Sbjct: 37 KSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 34.4 bits (80), Expect = 0.013
Identities = 22/123 (17%), Positives = 30/123 (24%), Gaps = 50/123 (40%)
Query: 401 HTGQKTRLCTM--CPAIFASIGGLRSHMKIVHHGLKTQQSCQSSHESKTCSVDEINKENE 458
+G C C IF++ L H K H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIH-------------------------- 35
Query: 459 EGATIRKVKPHEDSKEYMALNKPFKCD--DCDQRFLTKILLNKHKLLHFDKDYFSCNYCG 516
K F C C + F K L +H LH D + C + G
Sbjct: 36 --------------------QKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSG 75
Query: 517 KTF 519
+
Sbjct: 76 PSS 78
Score = 29.4 bits (67), Expect = 0.74
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 10/54 (18%)
Query: 209 HTGQKSHMCNL--CSARFTCKGALLGHIKVLHEG---YKRPQESC-----QSSH 252
+G C+ C F+ + L H K H + P+ +C H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKH 55
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 57.9 bits (141), Expect = 5e-11
Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 6/72 (8%)
Query: 146 SHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDH 205
S S+ P C C K + H+RI H + +KC+ C + L H
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERI-HCTD-----RPFKCNYCSFDTKQPSNLSKH 56
Query: 206 QYVHTGQKSHMC 217
G S
Sbjct: 57 MKKFHGDMSGPS 68
Score = 56.4 bits (137), Expect = 2e-10
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 341 SHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFV 400
S S+ P CS C + + H+R+H T + +KC+ C + L H
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTD---RPFKCNYCSFDTKQPSNLSKHMKK 59
Query: 401 HTGQKT 406
G +
Sbjct: 60 FHGDMS 65
Score = 52.9 bits (128), Expect = 3e-09
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYKRP 244
KCS C + + AAL H+ +H + CN CS L H+K G
Sbjct: 8 HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK-FHGDMSG 66
Query: 245 QES 247
S
Sbjct: 67 PSS 69
Score = 50.6 bits (122), Expect = 2e-08
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLH 370
C+ C S K LR H H T +PF C+ C K+ + + H +
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 50.2 bits (121), Expect = 3e-08
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFS 154
P KC +C +K L H+ +H + CN C +Q L HM +
Sbjct: 8 HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGP 67
Query: 155 CP 156
Sbjct: 68 SS 69
Score = 49.0 bits (118), Expect = 7e-08
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 127 CNLCGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKK 180
C+ C + K L H H T++PF C C K+ +SKH + G
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK-FHGDM 64
Score = 47.9 bits (115), Expect = 2e-07
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLHF-DKDYFSCNYCGKTFLHKYKLRRHIVIH 532
P KC +C +K L H+ +H D+ + CNYC L +H+
Sbjct: 8 HPEKCSECSYSCSSKAALRIHERIHCTDRPF-KCNYCSFDTKQPSNLSKHMKKF 60
Score = 47.5 bits (114), Expect = 2e-07
Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHGLKTQ 629
KCS C + + AL H+ +H + C C L H+K HG +
Sbjct: 8 HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK-FHGDMSG 66
Query: 630 QSC 632
S
Sbjct: 67 PSS 69
Score = 46.7 bits (112), Expect = 4e-07
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 6/68 (8%)
Query: 532 HSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQ 591
S+ P C C K + H+R +H + +KC+ C L H
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHER-IHCTD-----RPFKCNYCSFDTKQPSNLSKHM 57
Query: 592 FVHTGQKT 599
G +
Sbjct: 58 KKFHGDMS 65
Score = 46.3 bits (111), Expect = 7e-07
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKK 565
C+ C + K LR H IH T RPF C C K+ +++ H + G
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK-KFHGDM 64
Score = 44.8 bits (107), Expect = 2e-06
Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCTMCPAIFASIGGLRSHMKIVHHGLKTQ 436
KCS C + AAL H+ +H + C C L HMK HG +
Sbjct: 8 HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK-FHGDMSG 66
Query: 437 QSC 439
S
Sbjct: 67 PSS 69
Score = 38.2 bits (90), Expect = 4e-04
Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 289 KPFKCDDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHSTQKPF 348
P KC +C SK L H++ +H F CN C + L HM
Sbjct: 8 HPEKCSECSYSCSSKAALRIHER-IHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG 66
Query: 349 SCS 351
S
Sbjct: 67 PSS 69
Score = 37.5 bits (88), Expect = 8e-04
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLHF-DKDYFSCNYCGKTF 712
P KC +C +K L H+ +H D+ + CNYC
Sbjct: 8 HPEKCSECSYSCSSKAALRIHERIHCTDRPF-KCNYCSFDT 47
Score = 30.2 bits (69), Expect = 0.34
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLH 697
+PFKC+ C L+KH
Sbjct: 36 RPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 30.2 bits (69), Expect = 0.36
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 208 VHTGQKSHMCNLCSARFTCKGALLGH 233
+ C+ CS + K AL H
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIH 28
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 56.5 bits (137), Expect = 3e-10
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 130 CGQTFRQKFRLLNHMISHSTEKPFSC--PICKKQFKRKHEVSKHDRIVHQGKKYNVYKSY 187
C + + + L H+ +H+ EKP+ C C +F R E+++H R H G K +
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTG-----AKPF 76
Query: 188 KCSLCPKAFTHLAALEDHQYVHT 210
+C +C ++F+ L H H
Sbjct: 77 QCGVCNRSFSRSDHLALHMKRHQ 99
Score = 53.8 bits (130), Expect = 3e-09
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 325 CGLIFSEKKYLRNHMISHSTQKPFSCSL--CGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
C ++++ +L+ H+ +H+ +KP+ C+ C RF R + + H R H T K ++C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH-TG--AKPFQCG 79
Query: 383 LCPRVFTHLAALEDHQFVHT 402
+C R F+ L H H
Sbjct: 80 VCNRSFSRSDHLALHMKRHQ 99
Score = 52.6 bits (127), Expect = 7e-09
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 514 YCGKTFLHKYKLRRHIVIHSTARPFSC--PVCKKQFKRKQDVAGHDRVVHQGKKLIVYKS 571
C K + L+ H+ H+ +P+ C C +F R ++ H R H G K
Sbjct: 22 GCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTG-----AKP 75
Query: 572 YKCSLCPKAFTYLGALEDHQFVHT 595
++C +C ++F+ L H H
Sbjct: 76 FQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 49.5 bits (119), Expect = 1e-07
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 5/84 (5%)
Query: 96 KPFKCD--DCDQCFLTKILLNKHKLLHT-EGHLTCNL--CGQTFRQKFRLLNHMISHSTE 150
+ CD C + + L H HT E C C F + L H H+
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGA 73
Query: 151 KPFSCPICKKQFKRKHEVSKHDRI 174
KPF C +C + F R ++ H +
Sbjct: 74 KPFQCGVCNRSFSRSDHLALHMKR 97
Score = 48.4 bits (116), Expect = 3e-07
Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 10/91 (10%)
Query: 150 EKPFSCPI--CKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSL--CPKAFTHLAALEDH 205
+ C C K + + + H R H G+K YKC+ C F L H
Sbjct: 13 RRIHYCDYPGCTKVYTKSSHLKAHLRT-HTGEK-----PYKCTWEGCDWRFARSDELTRH 66
Query: 206 QYVHTGQKSHMCNLCSARFTCKGALLGHIKV 236
HTG K C +C+ F+ L H+K
Sbjct: 67 YRKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97
Score = 46.9 bits (112), Expect = 1e-06
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 480 KPFKCD--DCDQRFLTKILLNKHKLLHFDKDYFSCNY--CGKTFLHKYKLRRHIVIHSTA 535
+ CD C + + L H H + + C + C F +L RH H+ A
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGA 73
Query: 536 RPFSCPVCKKQFKRKQDVAGHDRV 559
+PF C VC + F R +A H +
Sbjct: 74 KPFQCGVCNRSFSRSDHLALHMKR 97
Score = 45.3 bits (108), Expect = 3e-06
Identities = 26/102 (25%), Positives = 34/102 (33%), Gaps = 9/102 (8%)
Query: 329 FSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSL--CPR 386
H P C K + + + + H R H +K YKC+ C
Sbjct: 3 SGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEK---PYKCTWEGCDW 55
Query: 387 VFTHLAALEDHQFVHTGQKTRLCTMCPAIFASIGGLRSHMKI 428
F L H HTG K C +C F+ L HMK
Sbjct: 56 RFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97
Score = 44.2 bits (105), Expect = 8e-06
Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 10/90 (11%)
Query: 536 RPFSCPV--CKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSL--CPKAFTYLGALEDHQ 591
R C C K + + + H R H G+K YKC+ C F L H
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRT-HTGEK-----PYKCTWEGCDWRFARSDELTRHY 67
Query: 592 FVHTGQKTHLCTMCPASYATIGGLRSHIKI 621
HTG K C +C S++ L H+K
Sbjct: 68 RKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97
Score = 43.4 bits (103), Expect = 1e-05
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 320 FTCN--SCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQ 371
+ C C F+ L H H+ KPF C +C + F R + + H + HQ
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 29.5 bits (67), Expect = 1.0
Identities = 27/131 (20%), Positives = 37/131 (28%), Gaps = 52/131 (39%)
Query: 185 KSYKCSL--CPKAFTHLAALEDHQYVHTGQKSHMCNL--CSARFTCKGALLGHIKVLHEG 240
+ + C C K +T + L+ H HTG+K + C C RF L H + H G
Sbjct: 14 RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTG 72
Query: 241 YKRPQESCQSSHESKTCSVDEINKENEEGATIRKVKPHEDSKEYMALNKPFKCDDCFQCF 300
K PF+C C + F
Sbjct: 73 AK-----------------------------------------------PFQCGVCNRSF 85
Query: 301 LSKILLNQHKK 311
L H K
Sbjct: 86 SRSDHLALHMK 96
Score = 28.7 bits (65), Expect = 1.7
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 673 KPFKC--DDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
KP+KC + CD RF L +H H F C C ++F
Sbjct: 44 KPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSF 85
Score = 27.2 bits (61), Expect = 6.0
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLH 697
KPF+C C++ F L H H
Sbjct: 74 KPFQCGVCNRSFSRSDHLALHMKRH 98
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 54.5 bits (132), Expect = 1e-09
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 126 TCNLCGQTFRQKFRLLNHMISHSTEKPFSC--PICKKQFKRKHEVSKHDRIVHQGKKYNV 183
CG+T+ + L H+ +H+ EKP+ C C +F R E+++H R H G
Sbjct: 9 DYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTG----- 62
Query: 184 YKSYKCSLCPKAFTHLAALEDHQYVH 209
++ ++C C +AF+ L H H
Sbjct: 63 HRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 53.7 bits (130), Expect = 2e-09
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSL--CGKRFKRENGVINHQRLHQTKKVYK 377
CG +++ +L+ H+ +H+ +KP+ C CG +F R + + H R H T ++
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH-TG--HR 64
Query: 378 SYKCSLCPRVFTHLAALEDHQFVH 401
++C C R F+ L H H
Sbjct: 65 PFQCQKCDRAFSRSDHLALHMKRH 88
Score = 52.9 bits (128), Expect = 4e-09
Identities = 22/92 (23%), Positives = 30/92 (32%), Gaps = 8/92 (8%)
Query: 147 HSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSL--CPKAFTHLAALED 204
+ C K + + + H R H G+K Y C C F L
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRT-HTGEK-----PYHCDWDGCGWKFARSDELTR 55
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGHIKV 236
H HTG + C C F+ L H+K
Sbjct: 56 HYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87
Score = 50.6 bits (122), Expect = 3e-08
Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 3/82 (3%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT-EGHLTCNL--CGQTFRQKFRLLNHMISHSTEKP 152
C + + L H HT E C+ CG F + L H H+ +P
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 153 FSCPICKKQFKRKHEVSKHDRI 174
F C C + F R ++ H +
Sbjct: 66 FQCQKCDRAFSRSDHLALHMKR 87
Score = 49.8 bits (120), Expect = 6e-08
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNY--CGKTFLHKYKLRRHIVIHSTARP 537
C + + L H H + + C++ CG F +L RH H+ RP
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP 65
Query: 538 FSCPVCKKQFKRKQDVAGHDRV 559
F C C + F R +A H +
Sbjct: 66 FQCQKCDRAFSRSDHLALHMKR 87
Score = 49.4 bits (119), Expect = 7e-08
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC--PVCKKQFKRKQDVAGHDRVVHQGKKLI 567
CGKT+ L+ H+ H+ +P+ C C +F R ++ H R H G
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTG---- 62
Query: 568 VYKSYKCSLCPKAFTYLGALEDHQFVH 594
++ ++C C +AF+ L H H
Sbjct: 63 -HRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 47.5 bits (114), Expect = 4e-07
Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 342 HSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSL--CPRVFTHLAALEDHQF 399
+ + CGK + + + + H R H +K Y C C F L H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEK---PYHCDWDGCGWKFARSDELTRHYR 58
Query: 400 VHTGQKTRLCTMCPAIFASIGGLRSHMKI 428
HTG + C C F+ L HMK
Sbjct: 59 KHTGHRPFQCQKCDRAFSRSDHLALHMKR 87
Score = 46.0 bits (110), Expect = 1e-06
Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
Query: 289 KPFKCDDCFQCFLSKILLNQHKKQMHFNKGGFTCN--SCGLIFSEKKYLRNHMISHSTQK 346
C + + L H + H + + C+ CG F+ L H H+ +
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHR 64
Query: 347 PFSCSLCGKRFKRENGVINHQRLH 370
PF C C + F R + + H + H
Sbjct: 65 PFQCQKCDRAFSRSDHLALHMKRH 88
Score = 44.4 bits (106), Expect = 4e-06
Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 8/92 (8%)
Query: 532 HSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSL--CPKAFTYLGALED 589
+ C K + + + H R H G+K Y C C F L
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRT-HTGEK-----PYHCDWDGCGWKFARSDELTR 55
Query: 590 HQFVHTGQKTHLCTMCPASYATIGGLRSHIKI 621
H HTG + C C +++ L H+K
Sbjct: 56 HYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87
Score = 34.0 bits (79), Expect = 0.020
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 480 KPFKCD--DCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIH 532
KP+ CD C +F L +H H F C C + F L H+ H
Sbjct: 34 KPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 28.6 bits (65), Expect = 1.5
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 673 KPFKCD--DCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
KP+ CD C +F L +H H F C C + F
Sbjct: 34 KPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAF 75
Score = 26.3 bits (59), Expect = 9.8
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLHF 698
+PF+C CD+ F L H HF
Sbjct: 64 RPFQCQKCDRAFSRSDHLALHMKRHF 89
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 52.6 bits (127), Expect = 4e-09
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVI--HSTARPFSCPVCKKQFKRKQDVAGHDRVVHQ 562
+ C C + + H RH V + + CP C K+F RK ++ H +++H+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 52.2 bits (126), Expect = 4e-09
Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 6/66 (9%)
Query: 147 HSTEKPFSCPICKKQFKRKHEVSKHDRIV-HQGKKYNVYKSYKCSLCPKAFTHLAALEDH 205
E + C +C + + +H + K Y C C K FT + H
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKV-----YPCPFCFKEFTRKDNMTAH 59
Query: 206 QYVHTG 211
+
Sbjct: 60 VKIIHK 65
Score = 52.2 bits (126), Expect = 4e-09
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 126 TCNLCGQTFRQKFRLLNHM--ISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQ 177
C +C + + H K + CP C K+F RK ++ H +I+H+
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 48.3 bits (116), Expect = 1e-07
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 320 FTCNSCGLIFSEKKYLRNHM--ISHSTQKPFSCSLCGKRFKRENGVINHQRLH 370
+ C C +++ H K + C C K F R++ + H ++
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 47.9 bits (115), Expect = 2e-07
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQ--YVHTGQKSHMCNLCSARFTCKGALLGHIKVLHE 239
+Y+C +C + +TH++ H K + C C FT K + H+K++H+
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 47.5 bits (114), Expect = 2e-07
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 342 HSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVH 401
+ + C +C + + + H + V K Y C C + FT + H +
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNV-KVYPCPFCFKEFTRKDNMTAHVKII 63
Query: 402 TG 403
Sbjct: 64 HK 65
Score = 44.1 bits (105), Expect = 4e-06
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 4/66 (6%)
Query: 531 IHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDH 590
+ C VC + + + H H+ K Y C C K FT + H
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNV----KVYPCPFCFKEFTRKDNMTAH 59
Query: 591 QFVHTG 596
+
Sbjct: 60 VKIIHK 65
Score = 43.3 bits (103), Expect = 6e-06
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQ--FVHTGQKTRLCTMCPAIFASIGGLRSHMKIVHHGL 433
+Y+C +C RV+TH++ H K C C F + +H+KI H +
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI-IHKI 66
Score = 43.3 bits (103), Expect = 6e-06
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQ--FVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHGL 626
+Y+C +C + +T++ H K + C C + + +H+KI H +
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI-IHKI 66
Score = 43.3 bits (103), Expect = 6e-06
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 480 KPFKCDDCDQRFLTKILLNKHK--LLHFDKDYFSCNYCGKTFLHKYKLRRHIVIH 532
++C C + + +H + + C +C K F K + H+ I
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 35.2 bits (82), Expect = 0.005
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 673 KPFKCDDCDQRFLTKILLNKHK--LLHFDKDYFSCNYCGKTF 712
++C C + + +H + + C +C K F
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEF 50
Score = 30.2 bits (69), Expect = 0.31
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 591 QFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHH 624
+F G+ T+ C +C Y I H H
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHK 35
Score = 29.8 bits (68), Expect = 0.42
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 206 QYVHTGQKSHMCNLCSARFTCKGALLGHIKVL-HEGYK 242
++ G+ ++ C +CS +T H K
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVK 39
Score = 29.4 bits (67), Expect = 0.56
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 398 QFVHTGQKTRLCTMCPAIFASIGGLRSHMKIVHH 431
+F G+ T C +C ++ I H H
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHK 35
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.1 bits (142), Expect = 5e-09
Identities = 102/674 (15%), Positives = 198/674 (29%), Gaps = 179/674 (26%)
Query: 20 LVEVVLQVFVGVVDAQ-LLETTNEKLNERKILVWKKISGKLSHETEART--HKLNEKEES 76
++ V FV D + + + L++ +I I + L K+E
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEI---DHIIMSKDAVSGTLRLFWTLLSKQEE 77
Query: 77 TTKKKVNTHGASKENVA-LNKPFKCDDCDQCFLTKILLNKHKLLHTEGHLTCNLCGQTFR 135
+K V + N L P K + +T++ + + L+ + Q F
Sbjct: 78 MVQKFVEE--VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN--------QVFA 127
Query: 136 QKFRLLNHMISHSTEKPFSCPICKKQFKRK-HEVSKHDRI-VH----QGKKY---NVYKS 186
+ S +P+ + ++ E+ + + GK + +V S
Sbjct: 128 KYNV--------SRLQPY------LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 187 YK--CSLCPKAFTHLAALEDHQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYKRP 244
YK C + K F +++ CN +L ++ L Y+
Sbjct: 174 YKVQCKMDFKIF----------WLNLKN----CN-------SPETVLEMLQKLL--YQID 210
Query: 245 QESCQSSHESKTCSVDEINKENEEGATIRKVKPHEDSKEYMALN--------KPFKCDDC 296
S S + I+ E + K KP+E+ + L F
Sbjct: 211 PNWTSRSDHSSNIKL-RIHSIQAELRRLLKSKPYENC--LLVLLNVQNAKAWNAFN---- 263
Query: 297 FQCFLSKILL---------------NQHKKQMHFNKGGFTCNSCGLIFSEKKYL--RNHM 339
C KILL H H + T + + KYL R
Sbjct: 264 LSC---KILLTTRFKQVTDFLSAATTTHISLDHHSMT-LTPDEVKSLLL--KYLDCRPQD 317
Query: 340 ISHSTQK--PFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALED- 396
+ P S+ + + ++ + K+ + SL L E
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL-----NVLEPAEYR 372
Query: 397 HQFVHTGQKTRLCTMCPAIFASIGGLRSHMKIVHHGLKTQQSCQSSHESKTCSVDEINKE 456
F RL ++F I T + V + +
Sbjct: 373 KMFD------RL-----SVF------PPSAHI-----PTILLSLIWFDVIKSDVMVVVNK 410
Query: 457 NEEGATIRKVKPHEDSKEYMALNKPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCG 516
+ + + K +P E + ++ K ++ L + +++ + + F +
Sbjct: 411 LHKYSLVEK-QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI----PKTFDSDDLI 465
Query: 517 KTFLHKYKLRRHIVIH-STARP------FSCPVCKKQF--------K-RKQDVAGHDR-- 558
+L +Y HI H F F K R A +
Sbjct: 466 PPYLDQY-FYSHIGHHLKNIEHPERMTLFR-----MVFLDFRFLEQKIRHDSTAWNASGS 519
Query: 559 VVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCTMCPASYATIGGLRS- 617
+++ ++L YK Y C PK + A+ D F+ + +L + S
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAILD--FLPKIE-ENL-------------ICSK 563
Query: 618 HIKIVHHGLKTQQS 631
+ ++ L +
Sbjct: 564 YTDLLRIALMAEDE 577
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 52.6 bits (127), Expect = 5e-09
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 321 TCNSCGLIFSEKKYLRNHMISHSTQKPFSCS--LCGKRFKRENGVINHQRLHQTKKVYKS 378
+CG F + L+ H SH+ Q P+ C C KRF + + H+++H K
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
Query: 379 YKCSLCPRVFTHL 391
CS + +T
Sbjct: 65 DSCSFVGKTWTLY 77
Score = 44.5 bits (106), Expect = 4e-06
Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Query: 154 SCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS--LCPKAFTHLAALEDHQYVHTG 211
C K FK+ +++ H H + Y+C C K F+ + L+ H+ VH G
Sbjct: 5 HFENCGKAFKKHNQLKVHQFS-HTQQL-----PYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Query: 212 QKSHMCNLCSARFTCKGALLGHIKVLH 238
+ CS L H+ H
Sbjct: 59 YPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 43.4 bits (103), Expect = 9e-06
Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 482 FKCD--DCDQRFLTKILLNKHKLLHFDKDYFSCNY--CGKTFLHKYKLRRHIVIHSTARP 537
+ C +C + F L H+ H + + C + C K F +L+RH +H+
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 538 FSCPVCKKQFKRKQDVAGHDRVVH 561
C K H H
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVAECH 85
Score = 41.8 bits (99), Expect = 4e-05
Identities = 20/87 (22%), Positives = 28/87 (32%), Gaps = 8/87 (9%)
Query: 539 SCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS--LCPKAFTYLGALEDHQFVHTG 596
C K FK+ + H H + Y+C C K F+ L+ H+ VH G
Sbjct: 5 HFENCGKAFKKHNQLKVHQFS-HTQQLP-----YECPHEGCDKRFSLPSRLKRHEKVHAG 58
Query: 597 QKTHLCTMCPASYATIGGLRSHIKIVH 623
C T H+ H
Sbjct: 59 YPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 41.5 bits (98), Expect = 4e-05
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 353 CGKRFKRENGVINHQRLHQTKKVYKSYKCS--LCPRVFTHLAALEDHQFVHTGQKTRLCT 410
CGK FK+ N + HQ H T++ Y+C C + F+ + L+ H+ VH G +
Sbjct: 9 CGKAFKKHNQLKVHQFSH-TQQ--LPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDD 65
Query: 411 MCPAIFASIGGLRSHMKIVH 430
C + + H+ H
Sbjct: 66 SCSFVGKTWTLYLKHVAECH 85
Score = 39.9 bits (94), Expect = 1e-04
Identities = 19/84 (22%), Positives = 26/84 (30%), Gaps = 5/84 (5%)
Query: 98 FKCD--DCDQCFLTKILLNKHKLLHT-EGHLTCN--LCGQTFRQKFRLLNHMISHSTEKP 152
+ C +C + F L H+ HT + C C + F RL H H+
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 153 FSCPICKKQFKRKHEVSKHDRIVH 176
C K KH H
Sbjct: 62 KKDDSCSFVGKTWTLYLKHVAECH 85
Score = 37.2 bits (87), Expect = 0.002
Identities = 29/132 (21%), Positives = 36/132 (27%), Gaps = 52/132 (39%)
Query: 187 YKCSL--CPKAFTHLAALEDHQYVHTGQKSHMCN--LCSARFTCKGALLGHIKVLHEGYK 242
Y C C KAF L+ HQ+ HT Q + C C RF+ L H KV H GY
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV-HAGYP 60
Query: 243 RPQESCQSSHESKTCSVDEINKENEEGATIRKVKPHEDSKEYMALNKPFKCDDCFQCFLS 302
K D C +
Sbjct: 61 -----------------------------------------------CKKDDSCSFVGKT 73
Query: 303 KILLNQHKKQMH 314
L +H + H
Sbjct: 74 WTLYLKHVAECH 85
Score = 28.0 bits (63), Expect = 2.5
Identities = 27/126 (21%), Positives = 33/126 (26%), Gaps = 51/126 (40%)
Query: 572 YKCSL--CPKAFTYLGALEDHQFVHTGQKTHLCT--MCPASYATIGGLRSHIKIVHHGLK 627
Y C C KAF L+ HQF HT Q + C C ++ L+ H K+ H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV-HAG-- 58
Query: 628 TQQSCQSSHESKTCSVDEINKENEEGATIRKVKPHEDSKEYMALNKPFKCDDCDQRFLTK 687
K D C T
Sbjct: 59 --------------------------------------------YPCKKDDSCSFVGKTW 74
Query: 688 ILLNKH 693
L KH
Sbjct: 75 TLYLKH 80
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 51.0 bits (123), Expect = 8e-09
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 142 NHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFT 197
+ S S KP+ C C K F R ++ H + VH + + +KC + +
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSE-----RPHKCQVWVSGPS 52
Score = 44.1 bits (105), Expect = 2e-06
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 531 IHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFT 582
S +P+ C C K F R + GH + VH + + +KC + +
Sbjct: 6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSE-----RPHKCQVWVSGPS 52
Score = 41.0 bits (97), Expect = 3e-05
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 185 KSYKCSLCPKAFTHLAALEDH-QYVHTGQKSHMCNLCSARFT 225
K Y C C K F+ L H + VHT ++ H C + + +
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 39.1 bits (92), Expect = 1e-04
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 337 NHMISHSTQKPFSCSLCGKRFKRENGVINH-QRLHQTKKVYKSYKCSLCPRVFT 389
+ S S KP+ C CGK F R + + H +++H ++ + +KC + +
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSE---RPHKCQVWVSGPS 52
Score = 37.6 bits (88), Expect = 4e-04
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 320 FTCNSCGLIFSEKKYLRNHM-ISHSTQKPFSCSLCGKRF 357
+ C SCG FS +L H+ H++++P C +
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 37.2 bits (87), Expect = 7e-04
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 570 KSYKCSLCPKAFTYLGALEDH-QFVHTGQKTHLCTMCPASYAT 611
K Y C C K F+ L H + VHT ++ H C + + ++
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 34.9 bits (81), Expect = 0.005
Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 28/68 (41%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHTEGHLTCNLCGQTFRQKFRLLNHM-ISHSTEKPFS 154
KP+ C CG+ F + L H+ H++E+P
Sbjct: 11 KPYICQS---------------------------CGKGFSRPDHLNGHIKQVHTSERPHK 43
Query: 155 CPICKKQF 162
C +
Sbjct: 44 CQVWVSGP 51
Score = 34.9 bits (81), Expect = 0.005
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 289 KPFKCDDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFS 330
KP+ C C + F LN H KQ+H ++ C S
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 33.3 bits (77), Expect = 0.014
Identities = 15/69 (21%), Positives = 19/69 (27%), Gaps = 29/69 (42%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHI-VIHSTARPF 538
KP+ C CGK F L HI +H++ RP
Sbjct: 11 KPYICQS----------------------------CGKGFSRPDHLNGHIKQVHTSERPH 42
Query: 539 SCPVCKKQF 547
C V
Sbjct: 43 KCQVWVSGP 51
Score = 32.2 bits (74), Expect = 0.042
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 377 KSYKCSLCPRVFTHLAALEDH-QFVHTGQKTRLCTMCPAIFAS 418
K Y C C + F+ L H + VHT ++ C + + +S
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 30.6 bits (70), Expect = 0.13
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 673 KPFKCDDCDQRFLTKILLNKH-KLLHFDKDYFSCNYCGKTF 712
KP+ C C + F LN H K +H + C
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 27.9 bits (63), Expect = 1.5
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYK 242
+ K ++C C F+ L GHIK +H +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSER 40
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 52.8 bits (126), Expect = 1e-08
Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 2/104 (1%)
Query: 330 SEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRL--HQTKKVYKSYKCSLCPRV 387
S + + + F C C + + H H +++ +
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 388 FTHLAALEDHQFVHTGQKTRLCTMCPAIFASIGGLRSHMKIVHH 431
+L + + QK C C F S+ L HM H
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKH 105
Score = 50.1 bits (119), Expect = 1e-07
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 6/96 (6%)
Query: 289 KPFKCDDCFQCFLSKILLNQHKKQM-HFNKGGFTCNSCGLI---FSEKKYLRNHMISHST 344
F+C DC + + + L H + H+ ++ K+ L
Sbjct: 18 SKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDA 77
Query: 345 QKPFSCSLCGKRFKRENGVINH--QRLHQTKKVYKS 378
QK C CG F+ + H + H K S
Sbjct: 78 QKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGPS 113
Score = 49.4 bits (117), Expect = 1e-07
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 10/84 (11%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHTEGHLT--------CNLCGQTFRQKFRLLNHMISH 147
F+C DC + T + L H ++ GH N + +K LL
Sbjct: 18 SKFRCKDCSAAYDTLVELTVH--MNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKE 75
Query: 148 STEKPFSCPICKKQFKRKHEVSKH 171
+K C C F+ ++S H
Sbjct: 76 DAQKVLKCMYCGHSFESLQDLSVH 99
Score = 49.4 bits (117), Expect = 2e-07
Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 2/94 (2%)
Query: 113 LNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKH 171
+ + T C C + L HM + + ++ +
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHM-NETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 172 DRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDH 205
++ K + K KC C +F L L H
Sbjct: 66 RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 48.6 bits (115), Expect = 3e-07
Identities = 13/93 (13%), Positives = 29/93 (31%), Gaps = 1/93 (1%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAAL 202
+ + F C C + E++ H + + +++ + + +L
Sbjct: 10 YGSIFTGASKFRCKDCSAAYDTLVELTVHMNE-TGHYRDDNHETDNNNPKRWSKPRKRSL 68
Query: 203 EDHQYVHTGQKSHMCNLCSARFTCKGALLGHIK 235
+ + QK C C F L H+
Sbjct: 69 LEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
Score = 45.5 bits (107), Expect = 3e-06
Identities = 15/102 (14%), Positives = 34/102 (33%), Gaps = 1/102 (0%)
Query: 523 YKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFT 582
+ + I + A F C C + ++ H + +++ + +
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNE-TGHYRDDNHETDNNNPKRWSKP 63
Query: 583 YLGALEDHQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHH 624
+L + + QK C C S+ ++ L H+ H
Sbjct: 64 RKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKH 105
Score = 44.4 bits (104), Expect = 9e-06
Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 5/97 (5%)
Query: 480 KPFKCDDCDQRFLTKILLNKH-----KLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHST 534
F+C DC + T + L H + + + N + K L
Sbjct: 18 SKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDA 77
Query: 535 ARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKS 571
+ C C F+ QD++ H +K+ S
Sbjct: 78 QKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGPSS 114
Score = 44.0 bits (103), Expect = 1e-05
Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 14/104 (13%)
Query: 590 HQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHGLKTQQSCQSSHESKTCSVDEINKE 649
+ + TG C C A+Y T+ L H+ H +++ + +
Sbjct: 10 YGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK---- 65
Query: 650 NEEGATIRKVKPHEDSKEYMALNKPFKCDDCDQRFLTKILLNKH 693
+ + + K KC C F + L+ H
Sbjct: 66 ----------RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 44.0 bits (103), Expect = 1e-05
Identities = 16/104 (15%), Positives = 31/104 (29%), Gaps = 14/104 (13%)
Query: 397 HQFVHTGQKTRLCTMCPAIFASIGGLRSHMKIVHHGLKTQQSCQSSHESKTCSVDEINKE 456
+ + TG C C A + ++ L HM H +++ + +
Sbjct: 10 YGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK---- 65
Query: 457 NEEGATIRKVKPHEDSKEYMALNKPFKCDDCDQRFLTKILLNKH 500
+ + + K KC C F + L+ H
Sbjct: 66 ----------RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 42.4 bits (99), Expect = 4e-05
Identities = 14/94 (14%), Positives = 25/94 (26%), Gaps = 1/94 (1%)
Query: 497 LNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGH 556
+ + F C C + +L H+ + ++
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNE-TGHYRDDNHETDNNNPKRWSKPRK 65
Query: 557 DRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDH 590
++ K K KC C +F L L H
Sbjct: 66 RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 38.6 bits (89), Expect = 0.001
Identities = 17/110 (15%), Positives = 32/110 (29%), Gaps = 15/110 (13%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYKRPQESCQSSHESKTCSVDEINK 264
+ + TG C CSA + L H+ Y+ +++ + +
Sbjct: 10 YGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGH-YRDDNHETDNNNPKRWSKPRK--- 65
Query: 265 ENEEGATIRKVKPHEDSKEYMALNKPFKCDDCFQCFLSKILLNQHKKQMH 314
+ + + K KC C F S L+ H +
Sbjct: 66 -----------RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 33.2 bits (75), Expect = 0.068
Identities = 11/60 (18%), Positives = 17/60 (28%), Gaps = 7/60 (11%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLH-------TEGHLTCNLCGQTFRQKFRLLNHMISHS 148
+ D + + + L + L C CG +F L HMI
Sbjct: 45 YRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 28.2 bits (62), Expect = 3.4
Identities = 10/56 (17%), Positives = 18/56 (32%)
Query: 61 HETEARTHKLNEKEESTTKKKVNTHGASKENVALNKPFKCDDCDQCFLTKILLNKH 116
H + N + +K + + + K KC C F + L+ H
Sbjct: 44 HYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 50.6 bits (122), Expect = 1e-08
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEG 240
+S+ C +C +AF L+ H HT +K + C LC+ FT + L+ H + +H G
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 50.2 bits (121), Expect = 2e-08
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 127 CNLCGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQG 178
C +C + F ++ L H SH+ EKP+ C +C + F R+ + +H + +H G
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 48.6 bits (117), Expect = 6e-08
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINH-QRLH 370
F C C F+ +++L+ H SH+ +KP+ C LC + F R + +I H Q++H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 47.5 bits (114), Expect = 2e-07
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 346 KPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDH-QFVHTG 403
+ F C +C + F R+ + H R H T + K Y C LC R FT L H Q +H+G
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH-TNE--KPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 47.1 bits (113), Expect = 2e-07
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQG 563
F C C + F + L+RH H+ +P+ C +C + F R+ + H + +H G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 46.7 bits (112), Expect = 4e-07
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 151 KPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDH-QYVH 209
+ F C +C + F R+ + +H R H + K Y C LC +AFT L H Q +H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS-HTNE-----KPYPCGLCNRAFTRRDLLIRHAQKIH 54
Query: 210 TGQKS 214
+G
Sbjct: 55 SGNLG 59
Score = 41.7 bits (99), Expect = 2e-05
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHGLKTQ 629
+S+ C +C +AF L+ H HT +K + C +C ++ L H + +H G +
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLGE 60
Score = 40.5 bits (96), Expect = 5e-05
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 536 RPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDH-QFVH 594
R F C VC + F R++ + H R H + K Y C LC +AFT L H Q +H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYR-SHTNE-----KPYPCGLCNRAFTRRDLLIRHAQKIH 54
Query: 595 TG 596
+G
Sbjct: 55 SG 56
Score = 38.6 bits (91), Expect = 2e-04
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCTMCPAIFASIGGLRSHMKIVHHGLKTQ 436
+S+ C +C R F L+ H HT +K C +C F L H + +H G +
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNLGE 60
Score = 30.9 bits (71), Expect = 0.13
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
+ F C+ C + F + L +H H ++ + C C + F
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAF 40
Score = 28.6 bits (65), Expect = 0.91
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 289 KPFKCDDCFQCFLSKILLNQHKKQMH 314
KP+ C C + F + LL +H +++H
Sbjct: 29 KPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 26.7 bits (60), Expect = 5.0
Identities = 9/27 (33%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 96 KPFKCDDCDQCFLTKILLNKH-KLLHT 121
KP+ C C++ F + LL +H + +H+
Sbjct: 29 KPYPCGLCNRAFTRRDLLIRHAQKIHS 55
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 48.0 bits (113), Expect = 4e-07
Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFS 539
+ ++C C+ + + + H+ L ++ C YC F + H + +
Sbjct: 15 EVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLT 71
Query: 540 CPVCKKQFKRKQDVAGHDRVVHQ 562
C C + FK + H VH
Sbjct: 72 CLECMRTFKSSFSIWRHQVEVHN 94
Score = 44.5 bits (104), Expect = 7e-06
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 2/91 (2%)
Query: 87 ASKENVALNKPFKCDDCDQCFLTKILLNKHKLLHTEGHLTCNLCGQTFRQKFRLLNHMIS 146
+ V + ++C C+ + + H+ L C C F H S
Sbjct: 6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC-RNAAVCPYCSLRFFSPELKQEHE-S 63
Query: 147 HSTEKPFSCPICKKQFKRKHEVSKHDRIVHQ 177
K +C C + FK + +H VH
Sbjct: 64 KCEYKKLTCLECMRTFKSSFSIWRHQVEVHN 94
Score = 43.0 bits (100), Expect = 2e-05
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 289 KPFKCDDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHSTQKPF 348
+ ++C C S + H++ C C L F + + H S K
Sbjct: 15 EVYQCRLCNAKLSSLLEQGSHERLCRNA---AVCPYCSLRFFSPELKQEHE-SKCEYKKL 70
Query: 349 SCSLCGKRFKRENGVINHQ 367
+C C + FK + HQ
Sbjct: 71 TCLECMRTFKSSFSIWRHQ 89
Score = 42.6 bits (99), Expect = 3e-05
Identities = 20/83 (24%), Positives = 28/83 (33%), Gaps = 6/83 (7%)
Query: 316 NKGGFTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKV 375
NK + C C S +H C C RF ++ H++K
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPE----LKQEHESKCE 66
Query: 376 YKSYKCSLCPRVFTHLAALEDHQ 398
YK C C R F ++ HQ
Sbjct: 67 YKKLTCLECMRTFKSSFSIWRHQ 89
Score = 40.7 bits (94), Expect = 1e-04
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 6/87 (6%)
Query: 344 TQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTG 403
++ + C LC + +H+RL + C C F ++H+
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRNA-----AVCPYCSLRFFSPELKQEHE-SKCE 66
Query: 404 QKTRLCTMCPAIFASIGGLRSHMKIVH 430
K C C F S + H VH
Sbjct: 67 YKKLTCLECMRTFKSSFSIWRHQVEVH 93
Score = 39.9 bits (92), Expect = 3e-04
Identities = 16/94 (17%), Positives = 26/94 (27%), Gaps = 9/94 (9%)
Query: 113 LNKHKLLHTEGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHD 172
+ + + C LC +H CP C +F +H
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEH- 61
Query: 173 RIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQ 206
+ YK C C + F ++ HQ
Sbjct: 62 ------ESKCEYKKLTCLECMRTFKSSFSIWRHQ 89
Score = 39.5 bits (91), Expect = 4e-04
Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 9/86 (10%)
Query: 506 DKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKK 565
+K+ + C C + H + A CP C +F + + + +
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPE-------LKQEHES 63
Query: 566 LIVYKSYKCSLCPKAFTYLGALEDHQ 591
YK C C + F ++ HQ
Sbjct: 64 KCEYKKLTCLECMRTFKSSFSIWRHQ 89
Score = 39.1 bits (90), Expect = 5e-04
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 9/90 (10%)
Query: 149 TEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYV 208
++ + C +C + E H+R+ + C C F ++H+
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRN--------AAVCPYCSLRFFSPELKQEHE-S 63
Query: 209 HTGQKSHMCNLCSARFTCKGALLGHIKVLH 238
K C C F ++ H +H
Sbjct: 64 KCEYKKLTCLECMRTFKSSFSIWRHQVEVH 93
Score = 29.9 bits (66), Expect = 0.84
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 675 FKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
C C RF + L +H+ K +C C +TF
Sbjct: 43 AVCPYCSLRFFSPELKQEHESKCEYKK-LTCLECMRTF 79
Score = 27.9 bits (61), Expect = 4.3
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 291 FKCDDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHSTQ 345
C C F S L +H+ + + K TC C F + H + Q
Sbjct: 43 AVCPYCSLRFFSPELKQEHESKCEYKK--LTCLECMRTFKSSFSIWRHQVEVHNQ 95
Score = 27.6 bits (60), Expect = 5.3
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
+ ++C C+ + + + H+ L ++ C YC F
Sbjct: 15 EVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRF 52
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 46.1 bits (110), Expect = 8e-07
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 10/73 (13%)
Query: 140 LLNHMISHSTEKPFSCPI--CKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFT 197
LLN+++ +P++CP+ C ++F R E+++H RI H G K ++C +C + F+
Sbjct: 9 LLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRI-HTG-----QKPFQCRICMRNFS 60
Query: 198 HLAALEDHQYVHT 210
L H HT
Sbjct: 61 RSDHLTTHIRTHT 73
Score = 45.0 bits (107), Expect = 2e-06
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 130 CGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRI 174
C + F + L H+ H+ +KPF C IC + F R ++ H R
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
Score = 42.7 bits (101), Expect = 1e-05
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 320 FTCN--SCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLH 370
+ C SC FS L H+ H+ QKPF C +C + F R + + H R H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 42.7 bits (101), Expect = 1e-05
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 510 FSCNY--CGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDR 558
++C C + F +L RHI IH+ +PF C +C + F R + H R
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 41.9 bits (99), Expect = 3e-05
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 335 LRNHMISHSTQKPFSCSL--CGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLA 392
L N+++ +P++C + C +RF R + + H R+H K ++C +C R F+
Sbjct: 9 LLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTG---QKPFQCRICMRNFSRSD 63
Query: 393 ALEDHQFVHT 402
L H HT
Sbjct: 64 HLTTHIRTHT 73
Score = 38.1 bits (89), Expect = 5e-04
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Query: 525 LRRHIVIHSTARPFSCPV--CKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFT 582
L ++V RP++CPV C ++F R ++ H R+ H G K ++C +C + F+
Sbjct: 9 LLNYVVPKM--RPYACPVESCDRRFSRSDELTRHIRI-HTG-----QKPFQCRICMRNFS 60
Query: 583 YLGALEDHQFVHT 595
L H HT
Sbjct: 61 RSDHLTTHIRTHT 73
Score = 37.7 bits (88), Expect = 9e-04
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 185 KSYKCSL--CPKAFTHLAALEDHQYVHTGQKSHMCNLCSARFTCKGALLGHIK 235
+ Y C + C + F+ L H +HTGQK C +C F+ L HI+
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 36.9 bits (86), Expect = 0.001
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 356 RFKRENGVINHQRLHQTKKVYKSYKCSL--CPRVFTHLAALEDHQFVHTGQKTRLCTMCP 413
N ++N+ + Y C + C R F+ L H +HTGQK C +C
Sbjct: 2 EPHPMNNLLNYVVPKM-----RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICM 56
Query: 414 AIFASIGGLRSHMKI 428
F+ L +H++
Sbjct: 57 RNFSRSDHLTTHIRT 71
Score = 35.7 bits (83), Expect = 0.004
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 570 KSYKCSL--CPKAFTYLGALEDHQFVHTGQKTHLCTMCPASYATIGGLRSHIKI 621
+ Y C + C + F+ L H +HTGQK C +C +++ L +HI+
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
Score = 32.3 bits (74), Expect = 0.060
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 480 KPFKCD--DCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHS 533
+P+ C CD+RF L +H +H + F C C + F L HI H+
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 30.0 bits (68), Expect = 0.48
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 96 KPFKCD--DCDQCFLTKILLNKHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHS 148
+P+ C CD+ F L +H +HT + C +C + F + L H+ +H+
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 27.7 bits (62), Expect = 2.8
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 673 KPFKCD--DCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
+P+ C CD+RF L +H +H + F C C + F
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNF 59
Score = 26.5 bits (59), Expect = 7.6
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 289 KPFKCD--DCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHS 343
+P+ C C + F L +H + H + F C C FS +L H+ +H+
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 26.1 bits (58), Expect = 9.3
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLH 697
KPF+C C + F L H H
Sbjct: 48 KPFQCRICMRNFSRSDHLTTHIRTH 72
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 46.5 bits (110), Expect = 1e-06
Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 7/76 (9%)
Query: 147 HSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKC-----SLCPKAFTHLAA 201
+ C + F HE+ H + H G ++ C K+F
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPE--QNNHVCYWEECPREGKSFKAKYK 77
Query: 202 LEDHQYVHTGQKSHMC 217
L +H VHTG+KS
Sbjct: 78 LVNHIRVHTGEKSGPS 93
Score = 45.7 bits (108), Expect = 2e-06
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 96 KPFKCDDCDQCFLTKILLNKH-KLLHTEGHLT---------CNLCGQTFRQKFRLLNHMI 145
CD+ F T L H + H G C G++F+ K++L+NH+
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR 83
Query: 146 SHSTEKPFSC 155
H+ EK
Sbjct: 84 VHTGEKSGPS 93
Score = 45.3 bits (107), Expect = 2e-06
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 7/78 (8%)
Query: 531 IHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKC-----SLCPKAFTYLG 585
I C + F ++ H + H G ++ C K+F
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPE--QNNHVCYWEECPREGKSFKAKY 76
Query: 586 ALEDHQFVHTGQKTHLCT 603
L +H VHTG+K+ +
Sbjct: 77 KLVNHIRVHTGEKSGPSS 94
Score = 43.0 bits (101), Expect = 2e-05
Identities = 15/71 (21%), Positives = 20/71 (28%), Gaps = 8/71 (11%)
Query: 289 KPFKCDDCFQCFLSKILLNQHKKQMHFNKGGFT--------CNSCGLIFSEKKYLRNHMI 340
C + F + L H H C G F K L NH+
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR 83
Query: 341 SHSTQKPFSCS 351
H+ +K S
Sbjct: 84 VHTGEKSGPSS 94
Score = 41.9 bits (98), Expect = 5e-05
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 9/70 (12%)
Query: 480 KPFKCDDCDQRFLTKILLNKH-KLLHFDKDYFSCNYC--------GKTFLHKYKLRRHIV 530
CD+ F T L H + H + + C GK+F KYKL HI
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR 83
Query: 531 IHSTARPFSC 540
+H+ +
Sbjct: 84 VHTGEKSGPS 93
Score = 39.2 bits (91), Expect = 3e-04
Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 342 HSTQKPFSCSLCGKRFKRENGVINH-QRLHQTKKVYKSYKC-----SLCPRVFTHLAALE 395
Q C + F + ++ H H ++ C + F L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 396 DHQFVHTGQKTRLCT 410
+H VHTG+K+ +
Sbjct: 80 NHIRVHTGEKSGPSS 94
Score = 38.8 bits (90), Expect = 6e-04
Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 12/79 (15%)
Query: 313 MHFNKGGFTCNSCGLIFSEKKYLRNHM----ISHSTQKPFSC-----SLCGKRFKRENGV 363
+ + SC FS L H+ + Q C GK FK + +
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 364 INHQRLHQTKKVYKSYKCS 382
+NH R+H T KS S
Sbjct: 79 VNHIRVH-TG--EKSGPSS 94
Score = 28.8 bits (64), Expect = 1.5
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 208 VHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYKR 243
+ Q S C F+ L+ H+ + H G
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPE 54
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.8 bits (121), Expect = 2e-06
Identities = 84/557 (15%), Positives = 143/557 (25%), Gaps = 198/557 (35%)
Query: 221 SAR-FTCK-GALLGHIKV---LHEGYKRPQESCQSSHESKTCSVDEINKENEEGATI--- 272
S R T G+L + V + QE T + ++E
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPT---EGFAADDEPTTPAELV 61
Query: 273 --------RKVKPHEDSKEYMALNKPFKCDDCFQCFLSKILLNQHKKQMHFNKGGFTCNS 324
V+P + + LN C F + L +H +
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNL------CLTEFENCYLEG---NDIHALAAKLLQEN 112
Query: 325 CGLIFSEKKYLRN-----HMISHSTQKPFSCSLCGKRFKREN-------------GVINH 366
+ K+ ++N M K + +L F+ G +
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSAL----FRAVGEGNAQLVAIFGGQGNTDD 168
Query: 367 -----QRLHQTKKVYKSYKCSL-----------------CPRVFTH----LAALED---- 396
+ L+QT Y L +VFT L LE+
Sbjct: 169 YFEELRDLYQT---YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 397 ------------------HQFVHTGQKTRLCTMCPA-IFASIGGLRSHMK-IV------- 429
Q H +L P + + + G H + +V
Sbjct: 226 PDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 430 -------------------HHGLKTQQSCQSSHESKTCSVDEINKENEEGATIRKVKPHE 470
G++ ++ + S S+ E + EN EG P
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEA--YPNTSLPPSILEDSLENNEGV------PS- 336
Query: 471 DSKEYMALNKPFKCDDCDQRFLTKIL--LNKHKLLHFDKD-YFSC-----NY--CG---- 516
M L+ + Q + + N H L K S N G
Sbjct: 337 ----PM-LS----ISNLTQEQVQDYVNKTNSH--LPAGKQVEISLVNGAKNLVVSGPPQS 385
Query: 517 ----KTFLHKYKL------------RRHIVIHS-----TARPFSCPVCKKQFKR-KQDVA 554
L K K R + + + PF + +D+
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS-PFHSHLLVPASDLINKDLV 444
Query: 555 GHDRVVHQGKKL-I-VYKSYKCS-LCPKAFTYLGALED---HQFVH-----TGQKTHLCT 603
++ V K + I VY ++ S L + + + D V + TH+
Sbjct: 445 KNN-VSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD 503
Query: 604 MCPASYATIGGLRSHIK 620
P + +G L K
Sbjct: 504 FGPGGASGLGVLTHRNK 520
Score = 38.1 bits (88), Expect = 0.013
Identities = 91/605 (15%), Positives = 157/605 (25%), Gaps = 237/605 (39%)
Query: 14 FVLKHVLVEVVLQV-----FVGVVDAQLLETTNEKLNERKILVWKKISGKLSHETEARTH 68
L H +E VL V F+ +QL E N+ L E + + + E T
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIA---SQLQEQFNKILPEP--------TEGFAADDEPTT- 56
Query: 69 KLNEKEESTTK------KKVNTHGASKENVALNKPFKCDDCDQCFLTKILLNKHKLLHTE 122
E K V + + LN F L +H
Sbjct: 57 ----PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCL------TEFENCYLEGND--IHA- 103
Query: 123 GHLTCNLCGQ---TFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHE-------VSKHD 172
L L + T + L+ + I+ + + K+ F +K +
Sbjct: 104 --LAAKLLQENDTTLVKTKELIKNYIT-------ARIMAKRPFDKKSNSALFRAVGEGNA 154
Query: 173 RIVH----QG----------KKYNVYKSYKCSLCPKAFTHLAAL----EDHQYVHTGQKS 214
++V QG Y Y L + L+ L D + V T
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT---- 210
Query: 215 HMCN----------------LCSARFTCK--GAL-LGHIKVLHE--GYKRPQESCQSSHE 253
N L S +C G + L H V + G+ P E
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF-TPGELRSYLKG 269
Query: 254 SKTCSVDEI---------NKENEEGATIRKVK-------------PH--------EDSKE 283
+ S + + E+ + + + P+ EDS E
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 284 -------YMALNKPFKCDDCFQCFLSKIL--LNQH---KKQMH---FN------------ 316
M L+ + Q + + N H KQ+ N
Sbjct: 330 NNEGVPSPM-LS----ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ 384
Query: 317 ------------KGGFTCNSCGLIFSEKK------YLRNHMIS---HSTQKPF---SCSL 352
K + + FSE+K +L ++ HS + L
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP---VASPFHS---HLLVPASDL 438
Query: 353 CGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCT-- 410
K + N N + + P V+ G R+ +
Sbjct: 439 INKDLVKNNVSFNAKDIQ-------------IP-VY-D---------TFDGSDLRVLSGS 474
Query: 411 ----MCPAIFASIGGLRSHMKIVHHGLKTQQSCQSSH-----ESKTCSVDEINKENEEGA 461
+ I V +T +++H + + N++G
Sbjct: 475 ISERIVDCIIR---------LPVK--WETTTQFKATHILDFGPGGASGLGVLTHRNKDGT 523
Query: 462 TIRKV 466
+R +
Sbjct: 524 GVRVI 528
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 5e-06
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K Y+CS+C KAF+H +L HQ +H+G+K +
Sbjct: 2 SSGSS-GTGEK-----PYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 38.6 bits (91), Expect = 2e-04
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K Y+CS+C KAF++ +L HQ +H+G+K +
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 37.9 bits (89), Expect = 3e-04
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYK 377
S + +KP+ CS+CGK F + HQR+H KK
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSG 42
Score = 37.5 bits (88), Expect = 4e-04
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCT 410
+K Y+CS+C + F+H +L HQ +H+G+K +
Sbjct: 3 SGSSGTGEK---PYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 34.4 bits (80), Expect = 0.006
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S + EKP+ C +C K F + +S H RI H GK K S
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRI-HSGK-----KPSGPS 44
Score = 33.3 bits (77), Expect = 0.015
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E C++CG+ F + L H HS +KP
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 32.5 bits (75), Expect = 0.025
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 512 CNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
C+ CGK F H+ L H IHS +P
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 30.6 bits (70), Expect = 0.15
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 322 CNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
C+ CG FS ++ L H HS +KP S
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 30.2 bits (69), Expect = 0.20
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K + C++C F+ + +L H
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVH 31
Score = 27.9 bits (63), Expect = 1.4
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P+ C VC K F +Q ++ H R +H GK K S
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQR-IHSGK-----KPSGPS 44
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 43.9 bits (103), Expect = 6e-06
Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 10/72 (13%)
Query: 335 LRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAAL 394
H + CS CG F R + + K+ C C + AAL
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR----------KTPMCEKCRKDSCQEAAL 55
Query: 395 EDHQFVHTGQKT 406
+ +G+KT
Sbjct: 56 NKDEGNESGKKT 67
Score = 43.1 bits (101), Expect = 9e-06
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 13/76 (17%)
Query: 140 LLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHL 199
H ++ C C F R+ +S+ K+ C C K
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------------KTPMCEKCRKDSCQE 52
Query: 200 AALEDHQYVHTGQKSH 215
AAL + +G+K+
Sbjct: 53 AALNKDEGNESGKKTS 68
Score = 42.0 bits (98), Expect = 3e-05
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 8/71 (11%)
Query: 306 LNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVIN 365
+ +K +H C+ CG+IF + S +K C C K +E +
Sbjct: 6 SGKRQK-IHLGDRSQKCSKCGIIFI-------RRSTLSRRKTPMCEKCRKDSCQEAALNK 57
Query: 366 HQRLHQTKKVY 376
+ KK
Sbjct: 58 DEGNESGKKTS 68
Score = 40.8 bits (95), Expect = 6e-05
Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 13/76 (17%)
Query: 525 LRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYL 584
+ IH R C C F R+ ++ K+ C C K
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------------KTPMCEKCRKDSCQE 52
Query: 585 GALEDHQFVHTGQKTH 600
AL + +G+KT
Sbjct: 53 AALNKDEGNESGKKTS 68
Score = 36.9 bits (85), Expect = 0.002
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Query: 497 LNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGH 556
K + +H C+ CG F+ + L R + C C+K ++ +
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNKD 58
Query: 557 DRVVHQGKK 565
+ GKK
Sbjct: 59 EG-NESGKK 66
Score = 33.5 bits (76), Expect = 0.024
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHTEGHLTCNLCGQTFRQKFRLLNHMISHSTEKPF 153
+ KC C F+ + L++ K C C + Q+ L + S +K
Sbjct: 17 RSQKCSKCGIIFIRRSTLSRRK------TPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
Score = 31.6 bits (71), Expect = 0.10
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 8/63 (12%)
Query: 289 KPFKCDDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHSTQKPF 348
+ KC C F+ + L++ K C C ++ L + S +K
Sbjct: 17 RSQKCSKCGIIFIRRSTLSRRKT--------PMCEKCRKDSCQEAALNKDEGNESGKKTS 68
Query: 349 SCS 351
S
Sbjct: 69 GPS 71
Score = 30.0 bits (67), Expect = 0.47
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 7/59 (11%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPF 538
+ KC C F+ + L++ K C C K + L + S +
Sbjct: 17 RSQKCSKCGIIFIRRSTLSRRK-------TPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
Score = 27.3 bits (60), Expect = 4.0
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 200 AALEDHQYVHTGQKSHMCNLCSARFTCKGALLGH 233
+ Q +H G +S C+ C F + L
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR 37
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 6e-06
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K Y C C KAF A L HQ +HTG+K +
Sbjct: 2 SSGSS-GSGEK-----PYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 39.0 bits (92), Expect = 1e-04
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
S S +KP+ C CGK F ++ HQR+H + K S
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGE---KPSGPS 44
Score = 37.1 bits (87), Expect = 5e-04
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K Y C C KAF L HQ +HTG+K +
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 36.0 bits (84), Expect = 0.001
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+K Y C C + F A L HQ +HTG+K
Sbjct: 3 SGSSGSGEK---PYVCDYCGKAFGLSAELVRHQRIHTGEK 39
Score = 34.8 bits (81), Expect = 0.004
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S S EKP+ C C K F E+ +H RI H G+ K S
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRI-HTGE-----KPSGPS 44
Score = 34.0 bits (79), Expect = 0.007
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
+ E C+ CG+ F L+ H H+ EKP
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.056
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ C+YCGK F +L RH IH+ +P
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.29
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
S +P+ C C K F ++ H R +H G+ K S
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQR-IHTGE-----KPSGPS 44
Score = 29.4 bits (67), Expect = 0.29
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
+G+K ++C+ C F L+ H
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRH 31
Score = 29.0 bits (66), Expect = 0.44
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
+ C+ CG F L H H+ +KP S
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 42.5 bits (100), Expect = 6e-06
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 337 NHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+ S + + PF CS C + F + N ++ H+R H K
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 36.8 bits (85), Expect = 7e-04
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 142 NHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKK 180
+ S + E PF C C + F +++ + +H+R H K
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERT-HARKS 39
Score = 35.6 bits (82), Expect = 0.002
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSH 215
+KCS C + FT L H+ H +
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHERTHARKSGP 41
Score = 34.1 bits (78), Expect = 0.007
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTH 600
+KCS C + FT L H+ H +
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHERTHARKSGP 41
Score = 33.3 bits (76), Expect = 0.013
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
PFKC CD+ F + L +H+ H
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHERTHA 36
Score = 32.9 bits (75), Expect = 0.020
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+KCS C RVFT L H+ H +
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 30.6 bits (69), Expect = 0.11
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLHFDK 507
PFKC CD+ F + L +H+ H K
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHERTHARK 38
Score = 30.6 bits (69), Expect = 0.11
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLHFDK 700
PFKC CD+ F + L +H+ H K
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHERTHARK 38
Score = 29.4 bits (66), Expect = 0.32
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKK 565
+ PF C C + F ++ + H+R H K
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHER-THARKS 39
Score = 28.7 bits (64), Expect = 0.68
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 289 KPFKCDDCFQCFLSKILLNQHKK 311
PFKC C + F + L QH++
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHER 33
Score = 27.5 bits (61), Expect = 1.4
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKP 347
F C+ C +F+++ YL H +H+ +
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 27.1 bits (60), Expect = 2.1
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 127 CNLCGQTFRQKFRLLNHMISHSTEKP 152
C+ C + F Q+ L+ H +H+ +
Sbjct: 15 CSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 27.1 bits (60), Expect = 2.3
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHS 533
F C+ C + F + L +H H+
Sbjct: 13 FKCSKCDRVFTQRNYLVQHERTHA 36
Score = 26.7 bits (59), Expect = 3.0
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYKRP 244
G+ C+ C FT + L+ H + H P
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERT-HARKSGP 41
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 8e-06
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K YKCS C KAFT + L HQ HTG++ +
Sbjct: 2 SSGSS-GTGEK-----PYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 40.6 bits (96), Expect = 4e-05
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 337 NHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
+ S + +KP+ CS CGK F R++G+ HQ+ H + + S
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGE---RHSGPS 44
Score = 39.0 bits (92), Expect = 1e-04
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K YKCS C KAFT L HQ HTG++ +
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 36.7 bits (86), Expect = 0.001
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 365 NHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCT 410
+ +K YKCS C + FT + L HQ HTG++ +
Sbjct: 2 SSGSSGTGEK---PYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 35.9 bits (84), Expect = 0.002
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 142 NHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
+ S + EKP+ C C K F RK + H + H G+ + S
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQS-HTGE-----RHSGPS 44
Score = 35.6 bits (83), Expect = 0.002
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E C+ CG+ F +K L H SH+ E+
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 31.7 bits (73), Expect = 0.049
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ C+ CGK F K L H H+ R
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 30.9 bits (71), Expect = 0.10
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
+ C+ CG F+ K L H SH+ ++ S
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 30.9 bits (71), Expect = 0.11
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K + C+ C FT K L H
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
Score = 30.6 bits (70), Expect = 0.13
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
KP+KC DC + F K L+ H+ HT
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHT 36
Score = 28.2 bits (64), Expect = 0.82
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P+ C C K F RK + H + H G+ + S
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQ-SHTGE-----RHSGPS 44
Score = 25.9 bits (58), Expect = 5.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLH 504
KP+KC DC + F K L+ H+ H
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 25.9 bits (58), Expect = 5.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLH 697
KP+KC DC + F K L+ H+ H
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 25.2 bits (56), Expect = 9.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 289 KPFKCDDCFQCFLSKILLNQHKK 311
KP+KC DC + F K L+ H++
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQ 33
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 8e-06
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
K YKCS C K+FT + L HQ HTG++ +
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 40.2 bits (95), Expect = 5e-05
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K YKCS C K+FT+ L HQ HTG++ +
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 40.2 bits (95), Expect = 5e-05
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 337 NHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
+ S + +KP+ CS CGK F ++ + HQ+ H + + S
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGE---RHSGPS 44
Score = 37.9 bits (89), Expect = 4e-04
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 365 NHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCT 410
+ +K YKCS C + FT + L HQ HTG++ +
Sbjct: 2 SSGSSGTGEK---PYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 36.0 bits (84), Expect = 0.001
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 142 NHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
+ S + EKP+ C C K F K + H + H G+ + S
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKC-HTGE-----RHSGPS 44
Score = 33.3 bits (77), Expect = 0.012
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E C+ CG++F K RL H H+ E+
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 32.5 bits (75), Expect = 0.028
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 512 CNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
C+ CGK+F K +LR H H+ R
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 31.7 bits (73), Expect = 0.051
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
KP+KC DC + F K L H+ HT
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHT 36
Score = 31.4 bits (72), Expect = 0.060
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K + C+ C FT K L H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
Score = 30.6 bits (70), Expect = 0.12
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 322 CNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
C+ CG F+ K LR H H+ ++ S
Sbjct: 15 CSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 27.1 bits (61), Expect = 2.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLH 504
KP+KC DC + F K L H+ H
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 27.1 bits (61), Expect = 2.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLH 697
KP+KC DC + F K L H+ H
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 27.1 bits (61), Expect = 2.2
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P+ C C K F K + H + H G+ + S
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQK-CHTGE-----RHSGPS 44
Score = 25.6 bits (57), Expect = 7.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 289 KPFKCDDCFQCFLSKILLNQHKK 311
KP+KC DC + F K L H+K
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQK 33
Score = 25.6 bits (57), Expect = 8.2
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 590 HQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHGLK 627
TG+K + C+ C S+ LR H K H G +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKC-HTGER 39
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 8e-06
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K Y C C KAF H + L++HQ +HTG+K +
Sbjct: 2 SSGSS-GTGEK-----PYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 38.3 bits (90), Expect = 2e-04
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
S + +KP++C CGK F ++ + HQR+H + K S
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGE---KPSGPS 44
Score = 37.1 bits (87), Expect = 6e-04
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K Y C C KAF + L++HQ +HTG+K +
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 36.4 bits (85), Expect = 0.001
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+K Y C C + F H + L++HQ +HTG+K
Sbjct: 3 SGSSGTGEK---PYNCEECGKAFIHDSQLQEHQRIHTGEK 39
Score = 34.8 bits (81), Expect = 0.004
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S + EKP++C C K F ++ +H RI H G+ K S
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRI-HTGE-----KPSGPS 44
Score = 33.3 bits (77), Expect = 0.013
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E C CG+ F +L H H+ EKP
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.044
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 499 KHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ ++C CGK F+H +L+ H IH+ +P
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.48
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P++C C K F + H R +H G+ K S
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQR-IHTGE-----KPSGPS 44
Score = 28.6 bits (65), Expect = 0.60
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYK 242
TG+K + C C F L H ++ H G K
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRI-HTGEK 39
Score = 28.6 bits (65), Expect = 0.71
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 322 CNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
C CG F L+ H H+ +KP S
Sbjct: 15 CEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 1.1
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
KP+ C++C + F+ L +H+ +HT
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHT 36
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 9e-06
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 171 HDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K Y+C +C KAF+H A+L HQ VH+G+K +
Sbjct: 3 SGSS-GTGEK-----PYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 37.9 bits (89), Expect = 4e-04
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K Y+C +C KAF++ +L HQ VH+G+K +
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 37.1 bits (87), Expect = 7e-04
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYK 377
S + +KP+ C +C K F + HQR+H +K
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSG 42
Score = 36.7 bits (86), Expect = 0.001
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+K Y+C +C + F+H A+L HQ VH+G+K
Sbjct: 3 SGSSGTGEK---PYECDVCRKAFSHHASLTQHQRVHSGEK 39
Score = 33.2 bits (77), Expect = 0.014
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S + EKP+ C +C+K F +++H R+ H G+ K S
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRV-HSGE-----KPSGPS 44
Score = 33.2 bits (77), Expect = 0.016
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E C++C + F L H HS EKP
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.027
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 512 CNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
C+ C K F H L +H +HS +P
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.36
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 322 CNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
C+ C FS L H HS +KP S
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.72
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K + C++C F+ +L H
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQH 31
Score = 25.9 bits (58), Expect = 5.2
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P+ C VC+K F + H R VH G+ K S
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQR-VHSGE-----KPSGPS 44
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 9e-06
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 171 HDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
GKK +KC+ C K FT ++L HQ +HTG+K +
Sbjct: 3 SGSS-GAGKK-----LFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 39.4 bits (93), Expect = 9e-05
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 554 AGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
GKK +KC+ C K FT +L HQ +HTG+K +
Sbjct: 1 GSSGSS-GAGKK-----LFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 38.6 bits (91), Expect = 1e-04
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
S + +K F C+ C K F + + + HQR+H + K S
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGE---KPSGPS 44
Score = 37.1 bits (87), Expect = 7e-04
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCT 410
KK +KC+ C + FT ++L HQ +HTG+K +
Sbjct: 3 SGSSGAGKK---LFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.003
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
+ CN C +TF Q L H H+ EKP
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.004
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S + +K F C CKK F + ++ H RI H G+ K S
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRI-HTGE-----KPSGPS 44
Score = 31.7 bits (73), Expect = 0.049
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
F CN C KTF L H IH+ +P
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.16
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
F CN C F++ L H H+ +KP S
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.27
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
G+K CN C FT +L H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVH 31
Score = 27.5 bits (62), Expect = 1.4
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ + F C CKK F + + H R +H G+ K S
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQR-IHTGE-----KPSGPS 44
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 42.1 bits (100), Expect = 9e-06
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
K++KC C F+ ++L HQ VH G+K +
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 39.4 bits (93), Expect = 8e-05
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K++KC C F+ +L HQ VH G+K +
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 37.9 bits (89), Expect = 3e-04
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
S +K + C C F + + + HQ +H + K S
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGE---KPSGPS 44
Score = 36.4 bits (85), Expect = 0.001
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+K ++KC C F+ ++L HQ VH G+K
Sbjct: 3 SGSSGMGEK---TWKCRECDMCFSQASSLRLHQNVHVGEK 39
Score = 34.4 bits (80), Expect = 0.005
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S EK + C C F + + H + H G+ K S
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNV-HVGE-----KPSGPS 44
Score = 32.5 bits (75), Expect = 0.025
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
K +KC +CD CF L H+ +H
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVHV 36
Score = 32.5 bits (75), Expect = 0.029
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 512 CNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
C C F LR H +H +P
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.033
Identities = 10/29 (34%), Positives = 10/29 (34%)
Query: 127 CNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
C C F Q L H H EKP
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.11
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 322 CNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
C C + FS+ LR H H +KP S
Sbjct: 15 CRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 30.6 bits (70), Expect = 0.11
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYK 242
G+K+ C C F+ +L H V H G K
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNV-HVGEK 39
Score = 27.1 bits (61), Expect = 1.9
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLH 504
K +KC +CD F L H+ +H
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVH 35
Score = 27.1 bits (61), Expect = 1.9
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLH 697
K +KC +CD F L H+ +H
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVH 35
Score = 26.7 bits (60), Expect = 3.3
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 289 KPFKCDDCFQCFLSKILLNQHKK 311
K +KC +C CF L H+
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQN 33
Score = 26.4 bits (59), Expect = 4.7
Identities = 9/48 (18%), Positives = 14/48 (29%), Gaps = 6/48 (12%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ + C C F + + H VH G+ K S
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQN-VHVGE-----KPSGPS 44
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 1e-05
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K Y+CS+C K+FT + L HQ +HTG+K +
Sbjct: 2 SSGSS-GTGEK-----PYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 38.7 bits (91), Expect = 2e-04
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
S + +KP+ CS+CGK F +++ + HQ++H + K S
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGE---KPSGPS 44
Score = 38.7 bits (91), Expect = 2e-04
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K Y+CS+C K+FT L HQ +HTG+K +
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 36.4 bits (85), Expect = 0.001
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCT 410
+K Y+CS+C + FT + L HQ +HTG+K +
Sbjct: 3 SGSSGTGEK---PYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.003
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S + EKP+ C IC K F +K ++ H +I H G+ K S
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQI-HTGE-----KPSGPS 44
Score = 33.3 bits (77), Expect = 0.014
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E C++CG++F +K +L H H+ EKP
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 31.4 bits (72), Expect = 0.072
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K + C++C FT K L H
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVH 31
Score = 31.0 bits (71), Expect = 0.084
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 512 CNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
C+ CGK+F K +L H IH+ +P
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.23
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 322 CNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
C+ CG F++K L H H+ +KP S
Sbjct: 15 CSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 1.4
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P+ C +C K F +K + H + +H G+ K S
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQ-IHTGE-----KPSGPS 44
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 1e-05
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 171 HDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K YKC +C K+F + ++L HQ +HTG+K +
Sbjct: 3 SGSS-GTGEK-----PYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 38.3 bits (90), Expect = 2e-04
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K YKC +C K+F Y +L HQ +HTG+K +
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 37.5 bits (88), Expect = 4e-04
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
S + +KP+ C +C K F+ + + HQR+H + K S
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGE---KPSGPS 44
Score = 36.7 bits (86), Expect = 9e-04
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+K YKC +C + F + ++L HQ +HTG+K
Sbjct: 3 SGSSGTGEK---PYKCDVCHKSFRYGSSLTVHQRIHTGEK 39
Score = 34.4 bits (80), Expect = 0.005
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S + EKP+ C +C K F+ ++ H RI H G+ K S
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRI-HTGE-----KPSGPS 44
Score = 34.0 bits (79), Expect = 0.008
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E C++C ++FR L H H+ EKP
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.036
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 512 CNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
C+ C K+F + L H IH+ +P
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.26
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K + C++C F +L H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVH 31
Score = 29.0 bits (66), Expect = 0.43
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
KP+KCD C + F L H+ +HT
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHT 36
Score = 28.6 bits (65), Expect = 0.68
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 322 CNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
C+ C F L H H+ +KP S
Sbjct: 15 CDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 1.5
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P+ C VC K F+ + H R +H G+ K S
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQR-IHTGE-----KPSGPS 44
Score = 25.6 bits (57), Expect = 8.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLH 504
KP+KCD C + F L H+ +H
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 25.6 bits (57), Expect = 8.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLH 697
KP+KCD C + F L H+ +H
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIH 35
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 1e-05
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K Y+C+ C KAF+ ++L HQ +HTG+K +
Sbjct: 2 SSGSS-GTGEK-----PYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 38.7 bits (91), Expect = 2e-04
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K Y+C+ C KAF+ +L HQ +HTG+K +
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 37.1 bits (87), Expect = 7e-04
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYK 377
S + +KP+ C+ CGK F + + HQ +H KK
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSG 42
Score = 36.7 bits (86), Expect = 8e-04
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCT 410
+K Y+C+ C + F+ ++L HQ +HTG+K +
Sbjct: 3 SGSSGTGEK---PYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 34.0 bits (79), Expect = 0.006
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E CN CG+ F + L H H+ +KP
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 32.5 bits (75), Expect = 0.027
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S + EKP+ C C K F + ++ H I H GK K S
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAI-HTGK-----KPSGPS 44
Score = 32.1 bits (74), Expect = 0.037
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 512 CNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
CN CGK F + L H IH+ +P
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 30.6 bits (70), Expect = 0.12
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K + CN C F+ + +L H
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTH 31
Score = 30.6 bits (70), Expect = 0.15
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 322 CNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
CN CG FS + L H H+ +KP S
Sbjct: 15 CNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 27.1 bits (61), Expect = 1.9
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P+ C C K F + + H +H GK K S
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQA-IHTGK-----KPSGPS 44
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.8 bits (99), Expect = 1e-05
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K YKC+ C KAF ++L HQ H+G+K +
Sbjct: 2 SSGSS-GTGEK-----PYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 37.9 bits (89), Expect = 3e-04
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K YKC+ C KAF +L HQ H+G+K +
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 37.1 bits (87), Expect = 7e-04
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
S + +KP+ C+ CGK F+ + + HQ H + K S
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGE---KPSGPS 44
Score = 36.0 bits (84), Expect = 0.001
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E CN CG+ FR + L H +HS EKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.002
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+K YKC+ C + F ++L HQ H+G+K
Sbjct: 3 SGSSGTGEK---PYKCNECGKAFRARSSLAIHQATHSGEK 39
Score = 32.9 bits (76), Expect = 0.020
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 512 CNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
CN CGK F + L H HS +P
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.036
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S + EKP+ C C K F+ + ++ H H G+ K S
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQAT-HSGE-----KPSGPS 44
Score = 32.1 bits (74), Expect = 0.041
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 322 CNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
CN CG F + L H +HS +KP S
Sbjct: 15 CNECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.11
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K + CN C F + +L H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIH 31
Score = 26.7 bits (60), Expect = 3.1
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P+ C C K F+ + +A H H G+K S
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQA-THSGEKP-----SGPS 44
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 1e-05
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K YKC C K + L+ HQ VHTG+K +
Sbjct: 2 SSGSS-GSGEK-----PYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 40.2 bits (95), Expect = 4e-05
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 337 NHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
+ S S +KP+ C CGK +KR + HQR+H + K S
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGE---KLSGPS 44
Score = 37.9 bits (89), Expect = 3e-04
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K YKC C K + L+ HQ VHTG+K +
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 36.4 bits (85), Expect = 0.001
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 365 NHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCT 410
+ + + K YKC C + + L+ HQ VHTG+K +
Sbjct: 2 SSGSSG-SGE--KPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 36.4 bits (85), Expect = 0.001
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 142 NHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
+ S S EKP+ C C K +KR+ ++ H R+ H G+ K S
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRV-HTGE-----KLSGPS 44
Score = 34.8 bits (81), Expect = 0.004
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
+ E C CG+ ++++ L H H+ EK
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 31.0 bits (71), Expect = 0.10
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ C CGK + + L H +H+ +
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 29.8 bits (68), Expect = 0.27
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 204 DHQYVHTGQKSHMCNLCSARFTCKGALLGH 233
+G+K + C C + + L H
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
Score = 29.8 bits (68), Expect = 0.27
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
KP+KC +C + + ++ L+ H+ +HT
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHT 36
Score = 29.4 bits (67), Expect = 0.34
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
S +P+ C C K +KR+ D+ H R VH G+KL S
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQR-VHTGEKL-----SGPS 44
Score = 29.0 bits (66), Expect = 0.39
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
+ C CG + + L H H+ +K S
Sbjct: 13 YKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 25.6 bits (57), Expect = 8.9
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLH 504
KP+KC +C + + ++ L+ H+ +H
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 25.6 bits (57), Expect = 8.9
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLH 697
KP+KC +C + + ++ L+ H+ +H
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVH 35
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 1e-05
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 169 SKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G K ++C+ C KAFT + L HQ +HTG+K +
Sbjct: 1 GSSGSS-GTGGK-----HFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 39.0 bits (92), Expect = 1e-04
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 337 NHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
+ S + K F C+ CGK F R++ + HQ++H + K S
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGE---KPSGPS 44
Score = 37.9 bits (89), Expect = 4e-04
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K ++C+ C KAFT L HQ +HTG+K +
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 36.7 bits (86), Expect = 8e-04
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 365 NHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCT 410
+ K ++C+ C + FT + L HQ +HTG+K +
Sbjct: 2 SSGSSGTGGK---HFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.003
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 142 NHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
+ S + K F C C K F RK +S H +I H G+ K S
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKI-HTGE-----KPSGPS 44
Score = 34.8 bits (81), Expect = 0.004
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T H C CG+ F +K L H H+ EKP
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.032
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
F C CGK F K L H IH+ +P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.18
Identities = 10/29 (34%), Positives = 10/29 (34%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG K C C FT K L H
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMH 31
Score = 29.8 bits (68), Expect = 0.21
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
F C CG F+ K L H H+ +KP S
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 1.4
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ + F C C K F RK ++ H + +H G+ K S
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQK-IHTGE-----KPSGPS 44
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 44.2 bits (103), Expect = 1e-05
Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 7/117 (5%)
Query: 281 SKEYMALNKPFKCDDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMI 340
SK+Y++ +K + L +K++ + ++ ++
Sbjct: 10 SKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLI--RAIVKTLIHNPQLLDESSYLYRLL 67
Query: 341 SHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDH 397
+ F C LC F + H R + + C +C + FT + DH
Sbjct: 68 ASKAISQFVCPLCLMPFSSSVSLKQHIRYTE-----HTKVCPVCKKEFTSTDSALDH 119
Score = 43.8 bits (102), Expect = 2e-05
Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQG 563
F C C F L++HI T CPVCKK+F H H
Sbjct: 75 FVCPLCLMPFSSSVSLKQHI--RYTEHTKVCPVCKKEFTSTDSALDHVCKKHNI 126
Score = 42.2 bits (98), Expect = 8e-05
Identities = 19/119 (15%), Positives = 37/119 (31%), Gaps = 8/119 (6%)
Query: 87 ASKENVALNKPFKCDDCDQCFLTKILLNKHKLLHTEGHLTCNLCGQTFRQKFRLLNHMIS 146
SK+ ++ +K + L + + + + L +++
Sbjct: 9 GSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLA 68
Query: 147 HSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDH 205
F CP+C F + +H R + C +C K FT + DH
Sbjct: 69 SKAISQFVCPLCLMPFSSSVSLKQHIRYTE--------HTKVCPVCKKEFTSTDSALDH 119
Score = 41.1 bits (95), Expect = 2e-04
Identities = 17/67 (25%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
Query: 112 LLNKHKLLHTEGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKH 171
L + C LC F L H+ TE CP+CKK+F H
Sbjct: 62 YLYRLLASKAISQFVCPLCLMPFSSSVSLKQHI--RYTEHTKVCPVCKKEFTSTDSALDH 119
Query: 172 DRIVHQG 178
H
Sbjct: 120 VCKKHNI 126
Score = 39.5 bits (91), Expect = 6e-04
Identities = 20/119 (16%), Positives = 37/119 (31%), Gaps = 9/119 (7%)
Query: 472 SKEYMALNKPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVI 531
SK+Y++ +K + L + + + + L + ++
Sbjct: 10 SKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQ-LLDESSYLYRLLA 68
Query: 532 HSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDH 590
F CP+C F + H R + C +C K FT + DH
Sbjct: 69 SKAISQFVCPLCLMPFSSSVSLKQHIRYTE--------HTKVCPVCKKEFTSTDSALDH 119
Score = 38.4 bits (88), Expect = 0.001
Identities = 16/110 (14%), Positives = 35/110 (31%), Gaps = 3/110 (2%)
Query: 324 SCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENG-VINHQRLHQTKKVYKSYKCS 382
+ + ++ R H ++ ++ + + ++ K + C
Sbjct: 19 GIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCP 78
Query: 383 LCPRVFTHLAALEDHQFVHTGQKTRLCTMCPAIFASIGGLRSHMKIVHHG 432
LC F+ +L+ H K C +C F S H+ H+
Sbjct: 79 LCLMPFSSSVSLKQHIRYTEHTKV--CPVCKKEFTSTDSALDHVCKKHNI 126
Score = 37.6 bits (86), Expect = 0.002
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQR 368
F C C + FS L+ H+ T+ C +C K F + ++H
Sbjct: 75 FVCPLCLMPFSSSVSLKQHI--RYTEHTKVCPVCKKEFTSTDSALDHVC 121
Score = 35.3 bits (80), Expect = 0.019
Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 4/98 (4%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAAL 202
H ++ ++ + + K + C LC F+ +L
Sbjct: 33 HQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAI--SQFVCPLCLMPFSSSVSL 90
Query: 203 EDHQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEG 240
+ H K +C +C FT + L H+ H
Sbjct: 91 KQHIRYTEHTK--VCPVCKKEFTSTDSALDHVCKKHNI 126
Score = 30.7 bits (68), Expect = 0.59
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHG 625
+ C LC F+ +L+ H K C +C + + H+ H+
Sbjct: 73 SQFVCPLCLMPFSSSVSLKQHIRYTEHTKV--CPVCKKEFTSTDSALDHVCKKHNI 126
Score = 30.7 bits (68), Expect = 0.69
Identities = 16/102 (15%), Positives = 26/102 (25%), Gaps = 6/102 (5%)
Query: 432 GLKTQQSCQSSHESKTCSVDEINKENEEGATIRKVKPHEDSKEYMALN----KPFKCDDC 487
+ + T + + + E S Y L F C C
Sbjct: 21 FIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLC 80
Query: 488 DQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHI 529
F + + L +H + C C K F H+
Sbjct: 81 LMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHV 120
Score = 29.1 bits (64), Expect = 2.2
Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 7/94 (7%)
Query: 250 SSHESKTCSVDEINKENEEGATIRKVKPHEDSKEYMALN----KPFKCDDCFQCFLSKIL 305
+ T + + + E S Y L F C C F S +
Sbjct: 30 KRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVS 89
Query: 306 LNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHM 339
L QH + + + C C F+ +H+
Sbjct: 90 LKQH---IRYTEHTKVCPVCKKEFTSTDSALDHV 120
Score = 27.6 bits (60), Expect = 8.3
Identities = 15/97 (15%), Positives = 30/97 (30%), Gaps = 7/97 (7%)
Query: 148 STEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQY 207
S K + ++ KR H+++ +K + K + ++
Sbjct: 15 SNHKGIFIHVTLEELKRYHQLT-------PEQKRLIRAIVKTLIHNPQLLDESSYLYRLL 67
Query: 208 VHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYKRP 244
+C LC F+ +L HI+ P
Sbjct: 68 ASKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCP 104
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 1e-05
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
+ Y C++C KAFT + L HQ +HTG+K +
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 39.4 bits (93), Expect = 9e-05
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
S + ++P+ C++CGK F + +I HQ++H T + K S
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH-TGE--KPSGPS 44
Score = 39.0 bits (92), Expect = 1e-04
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLC 602
+ Y C++C KAFT L HQ +HTG+K
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 36.3 bits (85), Expect = 0.001
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLC 409
++ Y C++C + FT + L HQ +HTG+K
Sbjct: 3 SGSSGTGER---PYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.003
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S + E+P+ C +C K F + + KH +I H G+ K S
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKI-HTGE-----KPSGPS 44
Score = 33.6 bits (78), Expect = 0.010
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E C +CG+ F + L+ H H+ EKP
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.038
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG++ ++C +C FT + L+ H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKH 31
Score = 30.9 bits (71), Expect = 0.098
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 512 CNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
C CGK F + L +H IH+ +P
Sbjct: 15 CTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.23
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ RP+ C VC K F + ++ H + +H G+ K S
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQK-IHTGE-----KPSGPS 44
Score = 29.4 bits (67), Expect = 0.37
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
+ C CG F+++ L H H+ +KP S
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 1.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
+P+ C C + F + L KH+ +HT
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHT 36
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 2e-05
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K YKC C K + L+ HQ VHTG++ +
Sbjct: 2 SSGSS-GTGEK-----PYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 37.9 bits (89), Expect = 3e-04
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
S + +KP+ C CGK + + + HQ++H + + S
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGE---RPSGPS 44
Score = 36.7 bits (86), Expect = 8e-04
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K YKC C K + L+ HQ VHTG++ +
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 36.0 bits (84), Expect = 0.002
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+K YKC C + + L+ HQ VHTG++
Sbjct: 3 SGSSGTGEK---PYKCEKCGKGYNSKFNLDMHQKVHTGER 39
Score = 34.8 bits (81), Expect = 0.004
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S + EKP+ C C K + K + H ++ H G+ + S
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKV-HTGE-----RPSGPS 44
Score = 34.4 bits (80), Expect = 0.005
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E C CG+ + KF L H H+ E+P
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 31.3 bits (72), Expect = 0.071
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 499 KHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ + C CGK + K+ L H +H+ RP
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 30.2 bits (69), Expect = 0.17
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
KP+KC+ C + + +K L+ H+ +HT
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHT 36
Score = 29.0 bits (66), Expect = 0.40
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K + C C + K L H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMH 31
Score = 28.6 bits (65), Expect = 0.56
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
+ C CG ++ K L H H+ ++P S
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 27.9 bits (63), Expect = 1.4
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P+ C C K + K ++ H + VH G+ + S
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQK-VHTGE-----RPSGPS 44
Score = 26.0 bits (58), Expect = 5.0
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLH 504
KP+KC+ C + + +K L+ H+ +H
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 26.0 bits (58), Expect = 5.0
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLH 697
KP+KC+ C + + +K L+ H+ +H
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 25.6 bits (57), Expect = 7.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 289 KPFKCDDCFQCFLSKILLNQHKK 311
KP+KC+ C + + SK L+ H+K
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQK 33
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 2e-05
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K Y+C +C KAFT A L HQ HTG+K +
Sbjct: 2 SSGSS-GTGEK-----PYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 37.9 bits (89), Expect = 3e-04
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
S + +KP+ C +C K F ++ + HQ+ H + K S
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGE---KPSGPS 44
Score = 37.5 bits (88), Expect = 5e-04
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E C +C + F QK L H +H+ EKP
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 8e-04
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K Y+C +C KAFT L HQ HTG+K +
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.004
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCT 410
+K Y+C +C + FT A L HQ HTG+K +
Sbjct: 3 SGSSGTGEK---PYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 33.7 bits (78), Expect = 0.009
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S + EKP+ C +C K F +K +++H + H G+ K S
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKT-HTGE-----KPSGPS 44
Score = 31.0 bits (71), Expect = 0.083
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 499 KHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ + C C K F K L +H H+ +P
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.13
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
+ C C F++K +L H +H+ +KP S
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.22
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K + C +CS FT K L H
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQH 31
Score = 28.3 bits (64), Expect = 0.85
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P+ C VC K F +K +A H + H G+ K S
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQK-THTGE-----KPSGPS 44
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 41.4 bits (98), Expect = 2e-05
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 171 HDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K ++C+ C K+F L HQ +HTG+KS +
Sbjct: 3 SGSS-GTGQK-----PFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 41.0 bits (97), Expect = 2e-05
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 337 NHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
+ S + QKPF C+ CGK F+ + ++ HQR+H + KS S
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGE---KSGPSS 44
Score = 37.9 bits (89), Expect = 3e-04
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K ++C+ C K+F G L HQ +HTG+K+ +
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 36.4 bits (85), Expect = 0.001
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 365 NHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCT 410
+ +K ++C+ C + F L HQ +HTG+K+ +
Sbjct: 2 SSGSSGTGQK---PFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 36.0 bits (84), Expect = 0.001
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 142 NHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
+ S + +KPF C C K F+ K + H RI H G+ KS S
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRI-HTGE-----KSGPSS 44
Score = 35.6 bits (83), Expect = 0.002
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T + C CG++FR K L+ H H+ EK
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 32.9 bits (76), Expect = 0.016
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
F C +CGK+F K L H IH+ +
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 32.5 bits (75), Expect = 0.025
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TGQK C C F KG L+ H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
Score = 31.0 bits (71), Expect = 0.077
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
F C CG F K L H H+ +K S
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 28.7 bits (65), Expect = 0.53
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +PF C C K F+ K ++ H R +H G+ KS S
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQR-IHTGE-----KSGPSS 44
Score = 26.3 bits (59), Expect = 3.9
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 397 HQFVHTGQKTRLCTMCPAIFASIGGLRSHMKIVHHGLK 434
TGQK CT C F + G L +H +I H G K
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRI-HTGEK 39
Score = 26.0 bits (58), Expect = 6.4
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 590 HQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHGLK 627
TGQK CT C S+ G L +H +I H G K
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRI-HTGEK 39
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 2e-05
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 337 NHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
+ S + +K ++C CGK F R ++ H+RLH + K S
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGE---KPSGPS 44
Score = 39.4 bits (93), Expect = 8e-05
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
K Y C C K+F+ L H+ +H+G+K +
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 36.7 bits (86), Expect = 7e-04
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 142 NHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
+ S + EK ++C C K F R + KH+R+ H G+ K S
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERL-HSGE-----KPSGPS 44
Score = 36.4 bits (85), Expect = 0.001
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K Y C C K+F+ L H+ +H+G+K +
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.003
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 365 NHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+ +K Y C C + F+ L H+ +H+G+K
Sbjct: 2 SSGSSGTGEK---LYNCKECGKSFSRAPCLLKHERLHSGEK 39
Score = 34.4 bits (80), Expect = 0.006
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E C CG++F + LL H HS EKP
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.041
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
++C CGK+F L +H +HS +P
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.12
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
+ C CG FS L H HS +KP S
Sbjct: 13 YNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.39
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K + C C F+ LL H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKH 31
Score = 28.3 bits (64), Expect = 0.96
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ + ++C C K F R + H+R +H G+ K S
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHER-LHSGE-----KPSGPS 44
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 2e-05
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K YKC+ C K FT + L +HQ +HTG K +
Sbjct: 2 SSGSS-GTGEK-----PYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 37.9 bits (89), Expect = 3e-04
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
S + +KP+ C+ CGK F + + + NHQR+H K S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGV---KPSGPS 44
Score = 36.7 bits (86), Expect = 8e-04
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K YKC+ C K FT L +HQ +HTG K +
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 35.6 bits (83), Expect = 0.002
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E CN CG+ F Q L NH H+ KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 35.6 bits (83), Expect = 0.002
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+K YKC+ C +VFT + L +HQ +HTG K
Sbjct: 3 SGSSGTGEK---PYKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 33.3 bits (77), Expect = 0.014
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S + EKP+ C C K F + ++ H RI H G K S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRI-HTGV-----KPSGPS 44
Score = 31.3 bits (72), Expect = 0.068
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 499 KHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ + CN CGK F L H IH+ +P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 29.8 bits (68), Expect = 0.21
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K + CN C FT L H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANH 31
Score = 29.8 bits (68), Expect = 0.24
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
+ CN CG +F++ +L NH H+ KP S
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 29.4 bits (67), Expect = 0.37
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P+ C C K F + +A H R +H G K S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQR-IHTGV-----KPSGPS 44
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.3 bits (98), Expect = 2e-05
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 171 HDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K Y C+ C KAFT + L HQ +HT QK +
Sbjct: 3 SGSS-GTGEK-----PYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 39.4 bits (93), Expect = 9e-05
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 337 NHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
+ S + +KP+ C+ CGK F + +I HQ++H TK+ K S
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH-TKQ--KPSGPS 44
Score = 39.0 bits (92), Expect = 1e-04
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K Y C+ C KAFT L HQ +HT QK +
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 36.7 bits (86), Expect = 7e-04
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 365 NHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCT 410
+ +K Y C+ C + FT + L HQ +HT QK +
Sbjct: 2 SSGSSGTGEK---PYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 35.2 bits (82), Expect = 0.003
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 142 NHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
+ S + EKP+ C C K F + + KH +I H + K S
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKI-HTKQ-----KPSGPS 44
Score = 33.3 bits (77), Expect = 0.015
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E C CG+ F + L+ H H+ +KP
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 30.9 bits (71), Expect = 0.082
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K ++C C FT + L+ H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKH 31
Score = 30.9 bits (71), Expect = 0.11
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ C CGK F + L +H IH+ +P
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 28.6 bits (65), Expect = 0.60
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
+ C CG F+ + L H H+ QKP S
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 26.7 bits (60), Expect = 3.0
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P+ C C K F + ++ H + +H + K S
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQK-IHTKQ-----KPSGPS 44
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 2e-05
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G++ Y+CS C KAF + L HQ +H G+K +
Sbjct: 2 SSGSS-GTGER-----HYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 39.0 bits (92), Expect = 1e-04
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
S + ++ + CS CGK F +++ + HQR+H+ + K S
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGE---KPSGPS 44
Score = 37.1 bits (87), Expect = 6e-04
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
+ Y+CS C KAF L HQ +H G+K +
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 36.0 bits (84), Expect = 0.002
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E H C+ CG+ F QK L H H EKP
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.004
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCT 410
++ Y+CS C + F + L HQ +H G+K +
Sbjct: 3 SGSSGTGER---HYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.006
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S + E+ + C C K F +K +S H RI H+G+ K S
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRI-HRGE-----KPSGPS 44
Score = 31.3 bits (72), Expect = 0.077
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 512 CNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
C+ CGK F+ K L H IH +P
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.20
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG++ + C+ C F K L H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMH 31
Score = 29.8 bits (68), Expect = 0.26
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 322 CNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
C+ CG F +K L H H +KP S
Sbjct: 15 CSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 27.1 bits (61), Expect = 2.0
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ R + C C K F +K ++ H R +H+G+ K S
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQR-IHRGE-----KPSGPS 44
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 2e-05
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 337 NHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
+ S + +KP+ CS CGK F ++ +I H R H + K S
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGE---KPSGPS 44
Score = 38.3 bits (90), Expect = 2e-04
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMC 217
K Y CS C KAF+ + L H H+G+K
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 36.8 bits (86), Expect = 9e-04
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K Y CS C KAF+ L H H+G+K +
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 35.6 bits (83), Expect = 0.002
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 365 NHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCT 410
+ +K Y CS C + F+ + L H H+G+K +
Sbjct: 2 SSGSSGAGEK---PYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 35.6 bits (83), Expect = 0.002
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 142 NHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
+ S + EKP+ C C K F K + H R H G+ K S
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRT-HSGE-----KPSGPS 44
Score = 34.4 bits (80), Expect = 0.005
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
E C+ CG+ F K L+ HM +HS EKP
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 33.7 bits (78), Expect = 0.010
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
+ C+ CG FS K YL HM +HS +KP S
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.026
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ C+ CGK F K L H+ HS +P
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 31.0 bits (71), Expect = 0.081
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYK 242
G+K + C+ C F+ K L+ H++ H G K
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRT-HSGEK 39
Score = 28.7 bits (65), Expect = 0.60
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P+ C C K F K + H R H G+ K S
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMR-THSGE-----KPSGPS 44
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.3 bits (98), Expect = 2e-05
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
+ CS C K FTH L HQ +HTG++ +
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 40.6 bits (96), Expect = 4e-05
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 337 NHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
+ S + + PF CS CGK F + +I HQ++H T + + S
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIH-TGE--RPSGPS 44
Score = 38.6 bits (91), Expect = 2e-04
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 365 NHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCT 410
+ + + CS C +VFTH L HQ +HTG++ +
Sbjct: 2 SSGSSGTGEN---PFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 38.6 bits (91), Expect = 2e-04
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
+ CS C K FT+ L HQ +HTG++ +
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 35.9 bits (84), Expect = 0.001
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 142 NHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
+ S + E PF C C K F K + H +I H G+ + S
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKI-HTGE-----RPSGPS 44
Score = 34.0 bits (79), Expect = 0.007
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
F C+ CGK F HK L H IH+ RP
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 34.0 bits (79), Expect = 0.007
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E C+ CG+ F K L+ H H+ E+P
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 31.3 bits (72), Expect = 0.060
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+ +C+ C FT K L+ H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIH 31
Score = 31.3 bits (72), Expect = 0.068
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
F C+ CG +F+ K L H H+ ++P S
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 28.2 bits (64), Expect = 0.80
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ PF C C K F K ++ H + +H G+ + S
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQK-IHTGE-----RPSGPS 44
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 2e-05
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G K Y+C+ C KAF+ + L HQ VHTG+K +
Sbjct: 2 SSGSS-GTGGK-----PYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 37.5 bits (88), Expect = 5e-04
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYK 377
S + KP+ C+ CGK F + + + HQR+H +K
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSG 42
Score = 36.7 bits (86), Expect = 8e-04
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T CN CG+ F Q +L H H+ EKP
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 8e-04
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K Y+C+ C KAF+ L HQ VHTG+K +
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.004
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCT 410
K Y+C+ C + F+ + L HQ VHTG+K +
Sbjct: 3 SGSSGTGGK---PYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.016
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S + KP+ C C K F + ++++H R+ H G+ K S
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRV-HTGE-----KPSGPS 44
Score = 32.5 bits (75), Expect = 0.028
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 499 KHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ CN CGK F KL RH +H+ +P
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.22
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 322 CNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
CN CG FS+ L H H+ +KP S
Sbjct: 15 CNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 28.7 bits (65), Expect = 0.56
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG K + CN C F+ L H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARH 31
Score = 26.3 bits (59), Expect = 4.6
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P+ C C K F + +A H R VH G+ K S
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQR-VHTGE-----KPSGPS 44
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.4 bits (98), Expect = 2e-05
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K YKC+ C KAF+ + L HQ +HTG+K +
Sbjct: 2 SSGSS-GTGEK-----PYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 38.3 bits (90), Expect = 2e-04
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 337 NHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
+ S + +KP+ C+ CGK F + + + HQR+H + K S
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGE---KPSGPS 44
Score = 36.7 bits (86), Expect = 7e-04
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K YKC+ C KAF+ L HQ +HTG+K +
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 36.0 bits (84), Expect = 0.002
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E CN CG+ F Q +L H H+ EKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.002
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 365 NHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+ +K YKC+ C + F+ + L HQ +HTG+K
Sbjct: 2 SSGSSGTGEK---PYKCNECGKAFSQTSKLARHQRIHTGEK 39
Score = 33.6 bits (78), Expect = 0.009
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 142 NHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
+ S + EKP+ C C K F + ++++H RI H G+ K S
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRI-HTGE-----KPSGPS 44
Score = 32.1 bits (74), Expect = 0.036
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 499 KHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ + CN CGK F KL RH IH+ +P
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.15
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 322 CNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
CN CG FS+ L H H+ +KP S
Sbjct: 15 CNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.54
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K + CN C F+ L H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARH 31
Score = 27.9 bits (63), Expect = 1.2
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P+ C C K F + +A H R +H G+ K S
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQR-IHTGE-----KPSGPS 44
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 41.3 bits (98), Expect = 2e-05
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 171 HDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
+K YKC C K + L+ HQ VH G+K+ +
Sbjct: 3 SGSS-GSVEK-----PYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 40.9 bits (97), Expect = 3e-05
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 337 NHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
+ S S +KP+ C CGK + R + HQR+H + K+ S
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH-MGE--KTSGPS 44
Score = 37.9 bits (89), Expect = 4e-04
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 142 NHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
+ S S EKP+ C C K + R+ + H R+ H G+ K+ S
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRV-HMGE-----KTSGPS 44
Score = 37.9 bits (89), Expect = 4e-04
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 365 NHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+ +K YKC C + + L+ HQ VH G+K
Sbjct: 2 SSGSSGSVEK---PYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 37.5 bits (88), Expect = 4e-04
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K YKC C K + L+ HQ VH G+KT +
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 34.4 bits (80), Expect = 0.006
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
+ E C CG+ + ++ L H H EK
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 30.9 bits (71), Expect = 0.097
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ C CGK + + L H +H +
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 30.5 bits (70), Expect = 0.13
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
S +P+ C C K + R+ ++ H R VH G+ K+ S
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQR-VHMGE-----KTSGPS 44
Score = 29.8 bits (68), Expect = 0.28
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYK 242
+ +K + C C + + L H +V H G K
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRV-HMGEK 39
Score = 29.0 bits (66), Expect = 0.42
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
+ C CG ++ + L H H +K S
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 26.3 bits (59), Expect = 4.7
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLH 504
KP+KC+DC + + ++ L+ H+ +H
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 26.3 bits (59), Expect = 4.7
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLH 697
KP+KC+DC + + ++ L+ H+ +H
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVH 35
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 41.4 bits (98), Expect = 2e-05
Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G K Y CS C K F+ + L HQ HTG K +
Sbjct: 2 SSGSS-GTGVK-----PYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 39.8 bits (94), Expect = 8e-05
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 337 NHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
+ S + KP+ CS C K F ++ +I HQR H K S
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGV---KPSGPS 44
Score = 37.5 bits (88), Expect = 5e-04
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K Y CS C K F+ L HQ HTG K +
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 35.2 bits (82), Expect = 0.003
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 365 NHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCT 410
+ K Y CS C + F+ + L HQ HTG K +
Sbjct: 2 SSGSSGTGVK---PYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 35.2 bits (82), Expect = 0.003
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T C+ C +TF K +L+ H SH+ KP
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 34.4 bits (80), Expect = 0.005
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 142 NHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
+ S + KP+ C C K F K ++ H R H G K S
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRS-HTGV-----KPSGPS 44
Score = 32.9 bits (76), Expect = 0.017
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG K + C+ C+ F+ K L+ H
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
Score = 31.3 bits (72), Expect = 0.062
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ C+ C KTF K +L H H+ +P
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 31.0 bits (71), Expect = 0.093
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
+ C+ C FS K L H SH+ KP S
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 28.7 bits (65), Expect = 0.68
Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P+ C C K F K + H R H G K S
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQR-SHTGV-----KPSGPS 44
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 2e-05
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K Y C+ C K+F + L H+ +HTG+K +
Sbjct: 2 SSGSS-GTGEK-----PYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 38.3 bits (90), Expect = 2e-04
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
S + +KP+ C+ CGK F +++ + H+R+H + K S
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGE---KPSGPS 44
Score = 37.5 bits (88), Expect = 4e-04
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E CN CG++F QK L H H+ EKP
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.003
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K Y C+ C K+F L H+ +HTG+K +
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.004
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S + EKP+ C C K F +K +++H RI H G+ K S
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRI-HTGE-----KPSGPS 44
Score = 33.6 bits (78), Expect = 0.010
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+K Y C+ C + F + L H+ +HTG+K
Sbjct: 3 SGSSGTGEK---PYICNECGKSFIQKSHLNRHRRIHTGEK 39
Score = 32.5 bits (75), Expect = 0.027
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 499 KHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ + CN CGK+F+ K L RH IH+ +P
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.11
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
+ CN CG F +K +L H H+ +KP S
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.41
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K ++CN C F K L H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRH 31
Score = 27.5 bits (62), Expect = 1.9
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P+ C C K F +K + H R +H G+ K S
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRR-IHTGE-----KPSGPS 44
Score = 25.2 bits (56), Expect = 10.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLH 504
KP+ C++C + F+ K LN+H+ +H
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIH 35
Score = 25.2 bits (56), Expect = 10.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLH 697
KP+ C++C + F+ K LN+H+ +H
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIH 35
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 2e-05
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K YKC +C KAF + L H VH+G++ +
Sbjct: 2 SSGSS-GTGEK-----PYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 37.9 bits (89), Expect = 3e-04
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYK 377
S + +KP+ C +CGK F+ + ++ H +H ++
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSG 42
Score = 36.7 bits (86), Expect = 8e-04
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K YKC +C KAF L H VH+G++ +
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 35.6 bits (83), Expect = 0.002
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E C +CG+ FR L+ H HS E+P
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 34.0 bits (79), Expect = 0.008
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+K YKC +C + F + L H VH+G++
Sbjct: 3 SGSSGTGEK---PYKCQVCGKAFRVSSHLVQHHSVHSGER 39
Score = 33.3 bits (77), Expect = 0.013
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S + EKP+ C +C K F+ + +H + H G+ + S
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSV-HSGE-----RPSGPS 44
Score = 29.8 bits (68), Expect = 0.25
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ C CGK F L +H +HS RP
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 29.0 bits (66), Expect = 0.49
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P+ C VC K F+ + H VH G+ + S
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHS-VHSGE-----RPSGPS 44
Score = 28.2 bits (64), Expect = 0.77
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 322 CNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
C CG F +L H HS ++P S
Sbjct: 15 CQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 27.9 bits (63), Expect = 1.0
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K + C +C F L+ H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQH 31
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 41.0 bits (97), Expect = 2e-05
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G++ Y+C C KAF ++L H+ HTG+K +
Sbjct: 2 SSGSS-GTGQR-----PYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 39.4 bits (93), Expect = 9e-05
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
S + Q+P+ C CGK FK ++ +I H+R H + K S
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGE---KPSGPS 44
Score = 37.1 bits (87), Expect = 6e-04
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
+ Y+C C KAF +L H+ HTG+K +
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 0.002
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCT 410
++ Y+C C + F ++L H+ HTG+K +
Sbjct: 3 SGSSGTGQR---PYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.003
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T + C CG+ F+ K L+ H SH+ EKP
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.013
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S + ++P+ C C K FK K + H R H G+ K S
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRS-HTGE-----KPSGPS 44
Score = 31.7 bits (73), Expect = 0.053
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 512 CNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
C CGK F K L H H+ +P
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.16
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TGQ+ + C C F K +L+ H
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICH 31
Score = 30.2 bits (69), Expect = 0.20
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 322 CNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
C CG F K L H SH+ +KP S
Sbjct: 15 CIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 28.7 bits (65), Expect = 0.56
Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ RP+ C C K FK K + H R H G+ K S
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRR-SHTGE-----KPSGPS 44
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 2e-05
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
+ +KC+ C K F + L H +H+ +KS +
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 40.2 bits (95), Expect = 4e-05
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
S S ++PF C+ CGK F R + + H RLH +++ KS S
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH-SRE--KSSGPS 44
Score = 37.1 bits (87), Expect = 6e-04
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
+ +KC+ C K F L H +H+ +K+ +
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 36.4 bits (85), Expect = 0.001
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S S E+PF C C K F R+ ++ H R+ H + KS S
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRL-HSRE-----KSSGPS 44
Score = 34.8 bits (81), Expect = 0.004
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
+ E CN CG+ F ++ L H+ HS EK
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 32.5 bits (75), Expect = 0.023
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
F CN CGK F + L H+ +HS +
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 32.1 bits (74), Expect = 0.034
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+ +KC+ C + F + L H +H+ +K
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREK 39
Score = 31.4 bits (72), Expect = 0.064
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
F CN CG F + +L H+ HS +K S
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 31.0 bits (71), Expect = 0.10
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
S RPF C C K F R+ +AGH R +H + KS S
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLR-LHSRE-----KSSGPS 44
Score = 29.4 bits (67), Expect = 0.33
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYK 242
+G++ CN C F + L GH+++ H K
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRL-HSREK 39
Score = 26.3 bits (59), Expect = 4.5
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCN 513
+PFKC++C + F + L H LH + +
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 26.3 bits (59), Expect = 4.5
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCN 706
+PFKC++C + F + L H LH + +
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 41.0 bits (97), Expect = 2e-05
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
YKCS C K+F+ L HQ +HT +K +
Sbjct: 11 NPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 39.4 bits (93), Expect = 1e-04
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
S + P+ CS C K F + ++ HQR+H T++ K S
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH-TRE--KPSGPS 44
Score = 37.9 bits (89), Expect = 3e-04
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
YKCS C K+F+ L HQ +HT +K +
Sbjct: 11 NPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 35.6 bits (83), Expect = 0.002
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S + P+ C C+K F K + H R+ H + K S
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRM-HTRE-----KPSGPS 44
Score = 35.6 bits (83), Expect = 0.002
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
YKCS C + F+ L HQ +HT +K
Sbjct: 3 SGSSGAGVN---PYKCSQCEKSFSGKLRLLVHQRMHTREK 39
Score = 34.4 bits (80), Expect = 0.006
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 127 CNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
C+ C ++F K RLL H H+ EKP
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 32.9 bits (76), Expect = 0.018
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ C+ C K+F K +L H +H+ +P
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 31.0 bits (71), Expect = 0.10
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 322 CNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
C+ C FS K L H H+ +KP S
Sbjct: 15 CSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 29.0 bits (66), Expect = 0.52
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYK 242
G + C+ C F+ K LL H ++ H K
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRM-HTREK 39
Score = 27.5 bits (62), Expect = 1.6
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ P+ C C+K F K + H R +H + K S
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQR-MHTRE-----KPSGPS 44
Score = 26.0 bits (58), Expect = 5.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLH 504
P+KC C++ F K+ L H+ +H
Sbjct: 11 NPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 26.0 bits (58), Expect = 5.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLH 697
P+KC C++ F K+ L H+ +H
Sbjct: 11 NPYKCSQCEKSFSGKLRLLVHQRMH 35
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 41.0 bits (97), Expect = 2e-05
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K Y+C C KAF+ L HQ VHTG+K +
Sbjct: 2 SSGSS-GTGEK-----PYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 37.9 bits (89), Expect = 3e-04
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
S + +KP+ C CGK F + +I HQR+H + K S
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGE---KPSGPS 44
Score = 36.3 bits (85), Expect = 0.001
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 554 AGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
G+K Y+C C KAF+ L HQ VHTG+K +
Sbjct: 1 GSSGSS-GTGEK-----PYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.004
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCT 410
+K Y+C C + F+ L HQ VHTG+K +
Sbjct: 3 SGSSGTGEK---PYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.005
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E C CG+ F Q L+ H H+ EKP
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.013
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S + EKP+ C C K F + + +H R+ H G+ K S
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRV-HTGE-----KPSGPS 44
Score = 30.6 bits (70), Expect = 0.13
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ C CGK F L +H +H+ +P
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.32
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K + C C F+ L+ H
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQH 31
Score = 28.6 bits (65), Expect = 0.58
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
+ C CG FS+ +L H H+ +KP S
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 1.4
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P+ C C K F + + H R VH G+ K S
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQR-VHTGE-----KPSGPS 44
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 3e-05
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
K Y C+ C K F+ + L HQ HTG+K +
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 39.1 bits (92), Expect = 1e-04
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
S S +KP+ C+ CGK F +++ + HQR H + K S
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGE---KPSGPS 44
Score = 37.1 bits (87), Expect = 6e-04
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K Y C+ C K F+ L HQ HTG+K +
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 36.4 bits (85), Expect = 0.001
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
+ E CN CG+TF QK L H +H+ EKP
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.002
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCT 410
+K Y C+ C + F+ + L HQ HTG+K +
Sbjct: 3 SGSSGSGEK---PYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.003
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S S EKP+ C C K F +K +S H R H G+ K S
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRT-HTGE-----KPSGPS 44
Score = 32.5 bits (75), Expect = 0.029
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
+ CN CG FS+K L H +H+ +KP S
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 32.1 bits (74), Expect = 0.032
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ CN CGKTF K L H H+ +P
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 31.0 bits (71), Expect = 0.087
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
+G+K + CN C F+ K L H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAH 31
Score = 26.7 bits (60), Expect = 2.6
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
S +P+ C C K F +K ++ H R H G+ K S
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQR-THTGE-----KPSGPS 44
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 3e-05
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 171 HDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K YKC C KAF ++ HQ +HTGQ+ +
Sbjct: 3 SGSS-GTGEK-----PYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 38.7 bits (91), Expect = 1e-04
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 337 NHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYK 377
+ S + +KP+ C CGK F + HQRLH ++
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSG 42
Score = 37.2 bits (87), Expect = 6e-04
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K YKC C KAF + HQ +HTGQ+ +
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 36.8 bits (86), Expect = 8e-04
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 365 NHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+ +K YKC C + F ++ HQ +HTGQ+
Sbjct: 2 SSGSSGTGEK---PYKCMECGKAFGDNSSCTQHQRLHTGQR 39
Score = 34.5 bits (80), Expect = 0.006
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 142 NHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
+ S + EKP+ C C K F ++H R+ H G+ + S
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRL-HTGQ-----RPSGPS 44
Score = 32.6 bits (75), Expect = 0.029
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E C CG+ F H H+ ++P
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 30.6 bits (70), Expect = 0.13
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 512 CNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
C CGK F +H +H+ RP
Sbjct: 15 CMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 29.5 bits (67), Expect = 0.35
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 322 CNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
C CG F + H H+ Q+P S
Sbjct: 15 CMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 28.7 bits (65), Expect = 0.60
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K + C C F + H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQH 31
Score = 26.4 bits (59), Expect = 4.2
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 6/48 (12%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P+ C C K F H R +H G+ + S
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQR-LHTGQ-----RPSGPS 44
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.9 bits (97), Expect = 3e-05
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 171 HDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K YKC+ C K FT + L +H +HTG+K +
Sbjct: 3 SGSS-GSGEK-----PYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 39.0 bits (92), Expect = 1e-04
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 337 NHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
+ S S +KP+ C+ CGK F + + + NH R+H + K S
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGE---KPSGPS 44
Score = 36.7 bits (86), Expect = 9e-04
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K YKC+ C K FT L +H +HTG+K +
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 35.9 bits (84), Expect = 0.002
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 365 NHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+ +K YKC+ C +VFT + L +H +HTG+K
Sbjct: 2 SSGSSGSGEK---PYKCNECGKVFTQNSHLTNHWRIHTGEK 39
Score = 34.8 bits (81), Expect = 0.004
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
+ E CN CG+ F Q L NH H+ EKP
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.008
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 142 NHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
+ S S EKP+ C C K F + ++ H RI H G+ K S
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRI-HTGE-----KPSGPS 44
Score = 30.5 bits (70), Expect = 0.13
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ CN CGK F L H IH+ +P
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.22
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 322 CNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
CN CG +F++ +L NH H+ +KP S
Sbjct: 15 CNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 0.92
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
+G+K + CN C FT L H
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNH 31
Score = 28.2 bits (64), Expect = 0.98
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
S +P+ C C K F + + H R +H G+ K S
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWR-IHTGE-----KPSGPS 44
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 41.0 bits (97), Expect = 3e-05
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 171 HDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K Y C C K+F + L HQ VH+G+K +
Sbjct: 3 SGSS-GTGEK-----PYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 37.9 bits (89), Expect = 3e-04
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYK 377
S + +KP++C CGK F+ + ++ HQR+H +K
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSG 42
Score = 37.6 bits (88), Expect = 4e-04
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K Y C C K+F + L HQ VH+G+K +
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 35.6 bits (83), Expect = 0.002
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+K Y C C + F + L HQ VH+G+K
Sbjct: 3 SGSSGTGEK---PYNCKECGKSFRWASCLLKHQRVHSGEK 39
Score = 34.9 bits (81), Expect = 0.004
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E C CG++FR LL H HS EKP
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.013
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S + EKP++C C K F+ + KH R+ H G+ K S
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRV-HSGE-----KPSGPS 44
Score = 31.8 bits (73), Expect = 0.041
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 512 CNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
C CGK+F L +H +HS +P
Sbjct: 15 CKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 29.5 bits (67), Expect = 0.30
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYK 242
TG+K + C C F LL H +V H G K
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRV-HSGEK 39
Score = 29.1 bits (66), Expect = 0.43
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P++C C K F+ + H R VH G+ K S
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQR-VHSGE-----KPSGPS 44
Score = 29.1 bits (66), Expect = 0.47
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
+ C CG F L H HS +KP S
Sbjct: 13 YNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 3e-05
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
S S ++P+ C+ CGK F R + +I H + H + KS S
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFRE---KSSGPS 44
Score = 39.0 bits (92), Expect = 1e-04
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
+ Y C+ C K F + L +H H +KS +
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 38.7 bits (91), Expect = 2e-04
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
+ Y C+ C K F L +H H +K+ +
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 36.3 bits (85), Expect = 0.001
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S S E+P+ C C K F R + +H + H + KS S
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKR-HFRE-----KSSGPS 44
Score = 34.8 bits (81), Expect = 0.004
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
+ E CN CG+ F + L+ H+ H EK
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 33.6 bits (78), Expect = 0.009
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ CN CGK F L H+ H +
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 33.3 bits (77), Expect = 0.014
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCT 410
++ Y C+ C + F + L +H H +K+ +
Sbjct: 3 SGSSGSGER---PYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 32.5 bits (75), Expect = 0.024
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
+ CN CG F +L H+ H +K S
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 30.9 bits (71), Expect = 0.095
Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
S RP+ C C K F R + H + H + KS S
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLK-RHFRE-----KSSGPS 44
Score = 29.4 bits (67), Expect = 0.37
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYK 242
+G++ + CN C F L+ H+K H K
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKR-HFREK 39
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 40.6 bits (96), Expect = 3e-05
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
K + CS C KAF+ + L HQ H +K +
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 39.8 bits (94), Expect = 7e-05
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 341 SHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
S +KPF CS C K F ++ ++ HQ+ H + K S
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEE---KPSGPS 42
Score = 37.5 bits (88), Expect = 4e-04
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K + CS C KAF+ L HQ H +K +
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 35.2 bits (82), Expect = 0.003
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 127 CNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
C+ C + F K LL H +H+ EKP
Sbjct: 13 CSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 34.8 bits (81), Expect = 0.004
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 146 SHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S EKPF C C+K F K + H + H + K S
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQT-HAEE-----KPSGPS 42
Score = 34.4 bits (80), Expect = 0.004
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
F C+ C FS K YL H +H+ +KP S
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 32.5 bits (75), Expect = 0.022
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K + CS C + F+ + L HQ H +K
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEEK 37
Score = 32.5 bits (75), Expect = 0.024
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
F C+ C K F K L H H+ +P
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 27.5 bits (62), Expect = 1.4
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 6/45 (13%)
Query: 531 IHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
S +PF C C+K F K + H + H + K S
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQ-THAEE-----KPSGPS 42
Score = 26.7 bits (60), Expect = 3.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLH 504
KPF C C++ F +K L H+ H
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTH 33
Score = 26.7 bits (60), Expect = 3.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLH 697
KPF C C++ F +K L H+ H
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTH 33
Score = 26.3 bits (59), Expect = 4.2
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 208 VHTGQKSHMCNLCSARFTCKGALLGH 233
+G+K C+ C F+ K LL H
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVH 29
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 3e-05
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K ++C C K+F+ + L HQ +HTG+ +
Sbjct: 2 SSGSS-GTGEK-----PHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 37.9 bits (89), Expect = 3e-04
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
S + +KP C CGK F + +I HQR+H + S
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGE---NPSGPS 44
Score = 37.1 bits (87), Expect = 6e-04
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K ++C C K+F++ L HQ +HTG+ +
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 35.6 bits (83), Expect = 0.002
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCT 410
+K ++C C + F+ + L HQ +HTG+ +
Sbjct: 3 SGSSGTGEK---PHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 33.7 bits (78), Expect = 0.011
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E C CG++F +L+ H H+ E P
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 32.9 bits (76), Expect = 0.019
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S + EKP C C K F ++ H RI H G+ S
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRI-HTGE-----NPSGPS 44
Score = 31.0 bits (71), Expect = 0.10
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K H C C F+ L+ H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVH 31
Score = 30.6 bits (70), Expect = 0.12
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 512 CNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
C CGK+F +L H IH+ P
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 29.0 bits (66), Expect = 0.46
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 322 CNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
C CG FS L H H+ + P S
Sbjct: 15 CRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 27.9 bits (63), Expect = 1.2
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P C C K F + H R +H G+ S
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQR-IHTGE-----NPSGPS 44
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 3e-05
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G++ Y+CS C KAF + L HQ +HTG+K +
Sbjct: 2 SSGSS-GTGER-----HYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 40.6 bits (96), Expect = 4e-05
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
S + ++ + CS CGK F R++ +I HQR+H + K S
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGE---KPSGPS 44
Score = 37.5 bits (88), Expect = 4e-04
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
+ Y+CS C KAF L HQ +HTG+K +
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 36.3 bits (85), Expect = 0.001
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S + E+ + C C K F RK + H RI H G+ K S
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRI-HTGE-----KPSGPS 44
Score = 35.6 bits (83), Expect = 0.002
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCT 410
++ Y+CS C + F + L HQ +HTG+K +
Sbjct: 3 SGSSGTGER---HYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 0.002
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E H C+ CG+ F +K L+ H H+ EKP
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.051
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ C+ CGK F K L H IH+ +P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 30.5 bits (70), Expect = 0.13
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG++ + C+ C F K L+ H
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMH 31
Score = 29.4 bits (67), Expect = 0.29
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ R + C C K F RK + H R +H G+ K S
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQR-IHTGE-----KPSGPS 44
Score = 29.4 bits (67), Expect = 0.30
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
+ C+ CG F+ K L H H+ +KP S
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 3e-05
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
K +KC +C K+F + L H VHT +K +
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 38.6 bits (91), Expect = 2e-04
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 337 NHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYK 377
+ S + +KPF C +CGK F + + H +H +K
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSG 42
Score = 37.5 bits (88), Expect = 4e-04
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K +KC +C K+F L H VHT +K +
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 36.3 bits (85), Expect = 0.001
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 142 NHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
+ S + EKPF C IC K F + +++H + H + K S
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMV-HTAE-----KPSGPS 44
Score = 35.9 bits (84), Expect = 0.001
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 365 NHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+ +K +KC +C + F + L H VHT +K
Sbjct: 2 SSGSSGTGEK---PFKCDICGKSFCGRSRLNRHSMVHTAEK 39
Score = 34.8 bits (81), Expect = 0.004
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E C++CG++F + RL H + H+ EKP
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 32.5 bits (75), Expect = 0.026
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
F C+ CGK+F + +L RH ++H+ +P
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 30.5 bits (70), Expect = 0.14
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
F C+ CG F + L H + H+ +KP S
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 28.6 bits (65), Expect = 0.67
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K C++C F + L H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRH 31
Score = 27.5 bits (62), Expect = 1.5
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +PF C +C K F + + H VH + K S
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSM-VHTAE-----KPSGPS 44
Score = 27.5 bits (62), Expect = 1.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLH 504
KPFKCD C + F + LN+H ++H
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 27.5 bits (62), Expect = 1.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLH 697
KPFKCD C + F + LN+H ++H
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 25.9 bits (58), Expect = 5.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 289 KPFKCDDCFQCFLSKILLNQHKK 311
KPFKCD C + F + LN+H
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSM 33
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 3e-05
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
K Y C+ C KAF+ ++L HQ +HTG+K +
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 38.3 bits (90), Expect = 3e-04
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 337 NHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
+ S + KP+ C+ CGK F + + HQ +H + K S
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGE---KPSGPS 44
Score = 37.1 bits (87), Expect = 5e-04
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLC 602
K Y C+ C KAF+ +L HQ +HTG+K
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 36.3 bits (85), Expect = 0.001
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 365 NHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+ T K Y C+ C + F+ ++L HQ +HTG+K
Sbjct: 2 SSGSSG-TGV--KPYMCNECGKAFSVYSSLTTHQVIHTGEK 39
Score = 34.0 bits (79), Expect = 0.007
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 142 NHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
+ S + KP+ C C K F ++ H I H G+ K S
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVI-HTGE-----KPSGPS 44
Score = 34.0 bits (79), Expect = 0.008
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T CN CG+ F L H + H+ EKP
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.048
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 512 CNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
CN CGK F L H VIH+ +P
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.16
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYK 242
TG K +MCN C F+ +L H +V+H G K
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTH-QVIHTGEK 39
Score = 30.2 bits (69), Expect = 0.16
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 322 CNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
CN CG FS L H + H+ +KP S
Sbjct: 15 CNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 1.8
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P+ C C K F + H +H G+ K S
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQV-IHTGE-----KPSGPS 44
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 3e-05
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
K KC+ C KAF + L HQ H K +
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 40.2 bits (95), Expect = 5e-05
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYK 377
S + +KP C+ CGK F ++ +I HQR H K
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSG 42
Score = 38.3 bits (90), Expect = 2e-04
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K KC+ C KAF + L HQ H K +
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 34.8 bits (81), Expect = 0.003
Identities = 14/48 (29%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S + EKP C C K F K ++ H R H K S
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRT-HVDD-----KHSGPS 44
Score = 34.1 bits (79), Expect = 0.007
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E C CG+ F K +L+ H +H +K
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 32.9 bits (76), Expect = 0.018
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCT 410
+K KC+ C + F + L HQ H K +
Sbjct: 3 SGSSGTGEK---PCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 32.9 bits (76), Expect = 0.020
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
C CGK F K +L H H +
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 31.4 bits (72), Expect = 0.057
Identities = 10/32 (31%), Positives = 11/32 (34%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
C CG F K L H +H K S
Sbjct: 13 CKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 29.1 bits (66), Expect = 0.38
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K C C F K L+ H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMH 31
Score = 26.0 bits (58), Expect = 5.8
Identities = 11/49 (22%), Positives = 14/49 (28%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P C C K F K + H R H K S
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQR-THVDDKH-----SGPS 44
Score = 25.2 bits (56), Expect = 9.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLH 504
KP KC +C + F K L H+ H
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 25.2 bits (56), Expect = 9.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLH 697
KP KC +C + F K L H+ H
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQRTH 35
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 3e-05
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
K +KC C K FT + L HQ VHTG+K +
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 39.8 bits (94), Expect = 6e-05
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 337 NHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
+ S S +KPF C CGKRF + + + +HQR+H + K S
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGE---KPSGPS 44
Score = 37.1 bits (87), Expect = 5e-04
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K +KC C K FT L HQ VHTG+K +
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 36.3 bits (85), Expect = 0.001
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 365 NHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+ +K +KC C + FT + L HQ VHTG+K
Sbjct: 2 SSGSSGSGEK---PFKCEECGKRFTQNSQLHSHQRVHTGEK 39
Score = 35.6 bits (83), Expect = 0.002
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 142 NHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
+ S S EKPF C C K+F + ++ H R+ H G+ K S
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRV-HTGE-----KPSGPS 44
Score = 33.7 bits (78), Expect = 0.009
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
+ E C CG+ F Q +L +H H+ EKP
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.13
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
F C CGK F +L H +H+ +P
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.16
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
S +PF C C K+F + + H R VH G+ K S
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQR-VHTGE-----KPSGPS 44
Score = 29.8 bits (68), Expect = 0.25
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 204 DHQYVHTGQKSHMCNLCSARFTCKGALLGH 233
+G+K C C RFT L H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
Score = 29.4 bits (67), Expect = 0.30
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
F C CG F++ L +H H+ +KP S
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.38
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
KPFKC++C + F L+ H+ +HT
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHT 36
Score = 25.9 bits (58), Expect = 5.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLH 504
KPFKC++C +RF L+ H+ +H
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 25.9 bits (58), Expect = 5.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLH 697
KPFKC++C +RF L+ H+ +H
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVH 35
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 40.9 bits (95), Expect = 3e-05
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+ C CG+ + L+ H+ +H+ +P+ C+ C FK + + H + K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 40.9 bits (95), Expect = 3e-05
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 187 YKCSLCPKAFTHLAALEDHQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYKR 243
Y C C + L+ H HT + + C C+ F KG L H+K K+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS-KAHSKK 57
Score = 40.1 bits (93), Expect = 8e-05
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 512 CNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKK 565
C CG L++HI H+ RP+ C C FK K ++ H + KK
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 38.9 bits (90), Expect = 2e-04
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 126 TCNLCGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKK 180
C CG ++ L H+ +H+ +P+ C C FK K ++KH + KK
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 38.2 bits (88), Expect = 3e-04
Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 350 CSLCGKRFKRENGVINHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
C CG R K+ + + H R H + Y C+ C F L H K
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDV---RPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 37.0 bits (85), Expect = 0.001
Identities = 16/50 (32%), Positives = 21/50 (42%)
Query: 572 YKCSLCPKAFTYLGALEDHQFVHTGQKTHLCTMCPASYATIGGLRSHIKI 621
Y C C L+ H HT + + CT C S+ T G L H+K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 34.3 bits (78), Expect = 0.008
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 482 FKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHS 533
+ C++C R +L KH H D + C YC +F K L +H+ +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53
Score = 34.3 bits (78), Expect = 0.009
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 6/59 (10%)
Query: 155 CPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
C C + K+ + KH R H + Y C+ C +F L H K
Sbjct: 4 CEECGIRXKKPSMLKKHIRT-HTDVR-----PYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 33.2 bits (75), Expect = 0.021
Identities = 16/50 (32%), Positives = 20/50 (40%)
Query: 379 YKCSLCPRVFTHLAALEDHQFVHTGQKTRLCTMCPAIFASIGGLRSHMKI 428
Y C C + L+ H HT + CT C F + G L HMK
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 32.4 bits (73), Expect = 0.044
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 6/59 (10%)
Query: 540 CPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
C C + K+ + H R H + Y C+ C +F G L H K
Sbjct: 4 CEECGIRXKKPSMLKKHIRT-HTDVR-----PYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 27.8 bits (61), Expect = 1.7
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 291 FKCDDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHSTQK 346
+ C++C +L +H + H + + C C F K L HM S + K
Sbjct: 2 YICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 26.2 bits (57), Expect = 5.9
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 675 FKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTF 712
+ C++C R +L KH H D + C YC +F
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSF 39
Score = 25.8 bits (56), Expect = 8.2
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
+P+ C C+ F TK L KH
Sbjct: 28 RPYHCTYCNFSFKTKGNLTKHMKSKA 53
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 3e-05
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 171 HDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K YKC+ C K F H + L HQ +HTG+K +
Sbjct: 3 SGSS-GTGEK-----PYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 37.9 bits (89), Expect = 3e-04
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 337 NHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
+ S + +KP+ C+ CGK F+ + + HQR+H + K S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGE---KPSGPS 44
Score = 36.3 bits (85), Expect = 0.001
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 365 NHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+ T + K YKC+ C +VF H + L HQ +HTG+K
Sbjct: 2 SSGSSG-TGE--KPYKCNECGKVFRHNSYLSRHQRIHTGEK 39
Score = 36.0 bits (84), Expect = 0.002
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K YKC+ C K F + L HQ +HTG+K +
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.004
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 142 NHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
+ S + EKP+ C C K F+ +S+H RI H G+ K S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRI-HTGE-----KPSGPS 44
Score = 34.0 bits (79), Expect = 0.007
Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E CN CG+ FR L H H+ EKP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.013
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ CN CGK F H L RH IH+ +P
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.12
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
+ CN CG +F YL H H+ +KP S
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.42
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K + CN C F L H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRH 31
Score = 28.6 bits (65), Expect = 0.71
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P+ C C K F+ ++ H R +H G+ K S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQR-IHTGE-----KPSGPS 44
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 40.6 bits (96), Expect = 4e-05
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 341 SHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKS 378
S + P+ CS CGK F R++ +I+HQR H + S
Sbjct: 4 GSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 39.0 bits (92), Expect = 1e-04
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMC 217
Y+CS C KAF L HQ H G+
Sbjct: 9 NPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 36.7 bits (86), Expect = 7e-04
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLC 602
Y+CS C KAF L HQ H G+
Sbjct: 9 NPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 33.3 bits (77), Expect = 0.011
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 127 CNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
C+ CG+ F +K +L++H +H+ E S
Sbjct: 13 CSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 33.3 bits (77), Expect = 0.012
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 146 SHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKC 189
S E P+ C C K F RK ++ H R H G+
Sbjct: 4 GSSGENPYECSECGKAFNRKDQLISHQRT-HAGE-----SGPSS 41
Score = 31.7 bits (73), Expect = 0.053
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 512 CNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
C+ CGK F K +L H H+ S
Sbjct: 13 CSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 30.9 bits (71), Expect = 0.088
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
Y+CS C + F L HQ H G+
Sbjct: 9 NPYECSECGKAFNRKDQLISHQRTHAGES 37
Score = 29.4 bits (67), Expect = 0.35
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 322 CNSCGLIFSEKKYLRNHMISHSTQKPFSC 350
C+ CG F+ K L +H +H+ + S
Sbjct: 13 CSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 27.1 bits (61), Expect = 2.0
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 6/44 (13%)
Query: 531 IHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKC 574
S P+ C C K F RK + H R H G+
Sbjct: 4 GSSGENPYECSECGKAFNRKDQLISHQR-THAGE-----SGPSS 41
Score = 25.2 bits (56), Expect = 9.3
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 206 QYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYK 242
+G+ + C+ C F K L+ H + H G
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRT-HAGES 37
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 40.7 bits (95), Expect = 4e-05
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 126 TCNLCGQTFRQKFRLLNHMISHSTEKPFSCPIC 158
C +CG+ FR + L H +SHS EKP+S
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 40.3 bits (94), Expect = 4e-05
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSCPVC 543
+C CGK F Y L RH + HS +P+S
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 39.5 bits (92), Expect = 9e-05
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 177 QGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCNLCSA 222
G K C +C K F + L H+ H+G+K + S
Sbjct: 3 SGSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG 48
Score = 38.0 bits (88), Expect = 3e-04
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLC 353
C CG IF + +L H +SHS +KP+S
Sbjct: 13 VACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 36.8 bits (85), Expect = 8e-04
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCTMC 605
K C +C K F + L H+ H+G+K +
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 34.9 bits (80), Expect = 0.004
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 372 TKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCTMC 412
+ + K C +C ++F + L H+ H+G+K
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 33.8 bits (77), Expect = 0.009
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 341 SHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
S T+K +C +CGK F+ + H+ H +K Y S S
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 30.7 bits (69), Expect = 0.11
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 479 NKPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYC 515
K C+ C + F LN+HKL H + +S
Sbjct: 10 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 30.7 bits (69), Expect = 0.11
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 672 NKPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYC 708
K C+ C + F LN+HKL H + +S
Sbjct: 10 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 29.1 bits (65), Expect = 0.41
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 146 SHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLC 192
S T K +C IC K F+ + +++H H G+ K Y
Sbjct: 6 SGRTRKQVACEICGKIFRDVYHLNRHKLS-HSGE-----KPYSSGPS 46
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 4e-05
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K YKC+ C K FT + L H+ VHTG K +
Sbjct: 2 SSGSS-GTGEK-----PYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 37.5 bits (88), Expect = 5e-04
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYK 377
S + +KP+ C+ CGK F + + + H+R+H K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSG 42
Score = 36.0 bits (84), Expect = 0.002
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K YKC+ C K FT L H+ VHTG K +
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 36.0 bits (84), Expect = 0.002
Identities = 13/42 (30%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E CN CG+ F Q L H H+ KP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 34.0 bits (79), Expect = 0.008
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+K YKC+ C +VFT + L H+ VHTG K
Sbjct: 3 SGSSGTGEK---PYKCNECGKVFTQNSHLARHRRVHTGGK 39
Score = 32.5 bits (75), Expect = 0.024
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S + EKP+ C C K F + +++H R+ H G K S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRV-HTGG-----KPSGPS 44
Score = 31.3 bits (72), Expect = 0.077
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 499 KHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ + CN CGK F L RH +H+ +P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 29.4 bits (67), Expect = 0.30
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 322 CNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
CN CG +F++ +L H H+ KP S
Sbjct: 15 CNECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 28.6 bits (65), Expect = 0.68
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K + CN C FT L H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH 31
Score = 25.9 bits (58), Expect = 5.7
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P+ C C K F + +A H R VH G K S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRR-VHTGG-----KPSGPS 44
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 4e-05
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
K YKC +C K F+ + L+ HQ VHTG+K +
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 38.3 bits (90), Expect = 2e-04
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
S +K + C +CGK F + + + HQR+H + K S
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGE---KPSGPS 44
Score = 36.7 bits (86), Expect = 8e-04
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K YKC +C K F+ L+ HQ VHTG+K +
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 0.002
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+K YKC +C + F+ + L+ HQ VHTG+K
Sbjct: 3 SGSSGMGEK---CYKCDVCGKEFSQSSHLQTHQRVHTGEK 39
Score = 34.4 bits (80), Expect = 0.005
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
E C++CG+ F Q L H H+ EKP
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.008
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S EK + C +C K+F + + H R+ H G+ K S
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRV-HTGE-----KPSGPS 44
Score = 30.2 bits (69), Expect = 0.16
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 512 CNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
C+ CGK F L+ H +H+ +P
Sbjct: 15 CDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.18
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
+ C+ CG FS+ +L+ H H+ +KP S
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.38
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
G+K + C++C F+ L H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTH 31
Score = 27.9 bits (63), Expect = 1.0
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ + C VC K+F + + H R VH G+ K S
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQR-VHTGE-----KPSGPS 44
Score = 25.6 bits (57), Expect = 7.0
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLH 504
K +KCD C + F L H+ +H
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 25.6 bits (57), Expect = 7.0
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLH 697
K +KCD C + F L H+ +H
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVH 35
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 4e-05
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K +KC C K++ L HQ VHTG+K +
Sbjct: 2 SSGSS-GTGEK-----PFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 38.3 bits (90), Expect = 2e-04
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
S + +KPF C CGK + + + HQR+H + K S
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGE---KPSGPS 44
Score = 36.7 bits (86), Expect = 8e-04
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K +KC C K++ L HQ VHTG+K +
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 36.0 bits (84), Expect = 0.001
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E C CG+++ Q+ L H H+ EKP
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.004
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S + EKPF C C K + ++ +++H R+ H G+K S
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRV-HTGEKP-----SGPS 44
Score = 34.4 bits (80), Expect = 0.005
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+K +KC C + + L HQ VHTG+K
Sbjct: 3 SGSSGTGEK---PFKCGECGKSYNQRVHLTQHQRVHTGEK 39
Score = 31.3 bits (72), Expect = 0.064
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 499 KHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ F C CGK++ + L +H +H+ +P
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.17
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
F C CG ++++ +L H H+ +KP S
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.18
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K C C + + L H
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQH 31
Score = 29.4 bits (67), Expect = 0.32
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +PF C C K + ++ + H R VH G+ K S
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQR-VHTGE-----KPSGPS 44
Score = 25.2 bits (56), Expect = 9.9
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCN 513
KPFKC +C + + ++ L +H+ +H + +
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 25.2 bits (56), Expect = 9.9
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCN 706
KPFKC +C + + ++ L +H+ +H + +
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 4e-05
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
K Y+CS C K+F+ L H HT +K +
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 39.1 bits (92), Expect = 1e-04
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
S +KP+ CS CGK F + H H + K S
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTRE---KPSGPS 44
Score = 36.8 bits (86), Expect = 0.001
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K Y+CS C K+F+ L H HT +K +
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 36.0 bits (84), Expect = 0.002
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
E C+ CG++F +RL H I+H+ EKP
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 34.8 bits (81), Expect = 0.004
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S EKP+ C C K F + +++H H + K S
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWIT-HTRE-----KPSGPS 44
Score = 33.7 bits (78), Expect = 0.010
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ C+ CGK+F Y+L +H + H+ +P
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 33.3 bits (77), Expect = 0.013
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+ K Y+CS C + F+ L H HT +K
Sbjct: 3 SGSSG-EGE--KPYQCSECGKSFSGSYRLTQHWITHTREK 39
Score = 30.6 bits (70), Expect = 0.14
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
+ C+ CG FS L H I+H+ +KP S
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 29.0 bits (66), Expect = 0.38
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYK 242
G+K + C+ C F+ L H H K
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWIT-HTREK 39
Score = 26.7 bits (60), Expect = 2.6
Identities = 9/48 (18%), Positives = 13/48 (27%), Gaps = 6/48 (12%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+P+ C C K F + H H + K S
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWI-THTRE-----KPSGPS 44
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 4e-05
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
K Y+C C KAF A L HQ +HTG+K +
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 38.6 bits (91), Expect = 2e-04
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 337 NHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
+ S + +KP+ C CGK F ++ + HQR+H + K S
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGE---KPSGPS 44
Score = 36.7 bits (86), Expect = 0.001
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K Y+C C KAF L HQ +HTG+K +
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 0.002
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 365 NHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+ +K Y+C C + F A L HQ +HTG+K
Sbjct: 2 SSGSSGTGEK---PYRCGECGKAFAQKANLTQHQRIHTGEK 39
Score = 34.4 bits (80), Expect = 0.005
Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E C CG+ F QK L H H+ EKP
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.005
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 142 NHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
+ S + EKP+ C C K F +K +++H RI H G+ K S
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRI-HTGE-----KPSGPS 44
Score = 31.3 bits (72), Expect = 0.060
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ C CGK F K L +H IH+ +P
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.27
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
+ C CG F++K L H H+ +KP S
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.29
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K + C C F K L H
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQH 31
Score = 28.2 bits (64), Expect = 0.77
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P+ C C K F +K ++ H R +H G+ K S
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQR-IHTGE-----KPSGPS 44
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 4e-05
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K +KC C KAF L H +HTG+K +
Sbjct: 2 SSGSS-GSGEK-----PFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 38.2 bits (90), Expect = 2e-04
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYK 377
S S +KPF C CGK F++ + +H R+H +K
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSG 42
Score = 36.3 bits (85), Expect = 0.001
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K +KC C KAF L H +HTG+K +
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 35.9 bits (84), Expect = 0.001
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
+ E C CG+ FRQ L +H+ H+ EKP
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.005
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+K +KC C + F L H +HTG+K
Sbjct: 3 SGSSGSGEK---PFKCKECGKAFRQNIHLASHLRIHTGEK 39
Score = 34.4 bits (80), Expect = 0.006
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S S EKPF C C K F++ ++ H RI H G+ K S
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRI-HTGE-----KPSGPS 44
Score = 30.9 bits (71), Expect = 0.11
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 499 KHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ F C CGK F L H+ IH+ +P
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.36
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
F C CG F + +L +H+ H+ +KP S
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.52
Identities = 7/29 (24%), Positives = 9/29 (31%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
+G+K C C F L H
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASH 31
Score = 28.6 bits (65), Expect = 0.54
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
S +PF C C K F++ +A H R +H G+ K S
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLR-IHTGE-----KPSGPS 44
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 40.3 bits (95), Expect = 4e-05
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
KS+ C C K F +++AL HQ VH G+K +
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 39.1 bits (92), Expect = 1e-04
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
KS+ C C K F Y+ AL HQ VH G+K +
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 36.8 bits (86), Expect = 8e-04
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+K S+ C C + F +++AL HQ VH G+K
Sbjct: 3 SGSSGSGEK---SHTCDECGKNFCYISALRIHQRVHMGEK 39
Score = 36.8 bits (86), Expect = 9e-04
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVY 376
S S +K +C CGK F + + HQR+H +K
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCS 41
Score = 32.9 bits (76), Expect = 0.021
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
+ E TC+ CG+ F L H H EK
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 32.9 bits (76), Expect = 0.021
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYKR 243
+G+KSH C+ C F AL H +V H G K
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRV-HMGEKC 40
Score = 30.3 bits (69), Expect = 0.17
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+C+ CGK F + LR H +H +
Sbjct: 13 HTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 28.7 bits (65), Expect = 0.57
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
TC+ CG F LR H H +K S
Sbjct: 13 HTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 27.6 bits (62), Expect = 1.4
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
K CD+C + F L H+ +H
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVHM 36
Score = 27.2 bits (61), Expect = 2.0
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 590 HQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHGLK 627
+G+K+H C C ++ I LR H ++ H G K
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRV-HMGEK 39
Score = 26.4 bits (59), Expect = 4.1
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKL 566
S + +C C K F + H R VH G+K
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQR-VHMGEKC 40
Score = 25.6 bits (57), Expect = 7.7
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 397 HQFVHTGQKTRLCTMCPAIFASIGGLRSHMKIVHHGLK 434
+G+K+ C C F I LR H ++ H G K
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRV-HMGEK 39
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 40.6 bits (96), Expect = 4e-05
Identities = 15/48 (31%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 171 HDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K YKC C K F L H VHTG+K +
Sbjct: 3 SGSS-GTGEK-----PYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 38.3 bits (90), Expect = 2e-04
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 337 NHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
+ S + +KP+ C CGK F + H +H + K S
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGE---KPSGPS 44
Score = 37.1 bits (87), Expect = 6e-04
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K YKC C K F L H VHTG+K +
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 36.8 bits (86), Expect = 0.001
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 365 NHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+ +K YKC C + F L H VHTG+K
Sbjct: 2 SSGSSGTGEK---PYKCEECGKGFICRRDLYTHHMVHTGEK 39
Score = 34.8 bits (81), Expect = 0.004
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 142 NHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
+ S + EKP+ C C K F + ++ H + H G+ K S
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMV-HTGE-----KPSGPS 44
Score = 33.3 bits (77), Expect = 0.014
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E C CG+ F + L H + H+ EKP
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 31.4 bits (72), Expect = 0.058
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 204 DHQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K + C C F C+ L H
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTH 31
Score = 31.0 bits (71), Expect = 0.090
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 512 CNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
C CGK F+ + L H ++H+ +P
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.31
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
KP+KC++C + F+ + L H ++HT
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHT 36
Score = 29.4 bits (67), Expect = 0.34
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 322 CNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
C CG F ++ L H + H+ +KP S
Sbjct: 15 CEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 2.1
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P+ C C K F ++D+ H VH G+ K S
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHM-VHTGE-----KPSGPS 44
Score = 25.2 bits (56), Expect = 9.3
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLH 504
KP+KC++C + F+ + L H ++H
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVH 35
Score = 25.2 bits (56), Expect = 9.3
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLH 697
KP+KC++C + F+ + L H ++H
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVH 35
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 4e-05
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K YKC+ C K FT + L H+ +HTG+K +
Sbjct: 2 SSGSS-GTGEK-----PYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 37.1 bits (87), Expect = 5e-04
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYK 377
S + +KP+ C+ CGK F + + + H+ +H +K
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSG 42
Score = 36.3 bits (85), Expect = 0.001
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E CN CG+ F Q L H H+ EKP
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.002
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K YKC+ C K FT L H+ +HTG+K +
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.008
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+K YKC+ C +VFT + L H+ +HTG+K
Sbjct: 3 SGSSGTGEK---PYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 32.9 bits (76), Expect = 0.019
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S + EKP+ C C K F + +++H I H G+ K S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGI-HTGE-----KPSGPS 44
Score = 31.3 bits (72), Expect = 0.075
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 499 KHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ + CN CGK F L RH IH+ +P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.36
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
+ CN CG +F++ +L H H+ +KP S
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 0.85
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K + CN C FT L H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARH 31
Score = 26.7 bits (60), Expect = 3.4
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P+ C C K F + +A H +H G+ K S
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRG-IHTGE-----KPSGPS 44
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 4e-05
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
K Y+C C K F + L H+ VHTG++S +
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 37.5 bits (88), Expect = 5e-04
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
S S +KP+ C C K F + + H+R+H + +S S
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGE---RSSGPS 44
Score = 37.1 bits (87), Expect = 6e-04
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLC 602
K Y+C C K F +G L H+ VHTG+++
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 35.2 bits (82), Expect = 0.003
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S S +KP+ C C+K F + +++H R+ H G+ +S S
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRV-HTGE-----RSSGPS 44
Score = 33.7 bits (78), Expect = 0.009
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
+ + C C +TF Q L H H+ E+
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 32.5 bits (75), Expect = 0.023
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ C C KTF+ L +H +H+ R
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 32.1 bits (74), Expect = 0.041
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
KK Y+C C + F + L H+ VHTG++
Sbjct: 3 SGSSGSGKK---PYECKECRKTFIQIGHLNQHKRVHTGER 39
Score = 28.7 bits (65), Expect = 0.60
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
+ C C F + +L H H+ ++ S
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 27.9 bits (63), Expect = 1.3
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
S +P+ C C+K F + + H R VH G+ +S S
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKR-VHTGE-----RSSGPS 44
Score = 26.7 bits (60), Expect = 3.3
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYK 242
+G+K + C C F G L H +V H G +
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRV-HTGER 39
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 40.2 bits (95), Expect = 4e-05
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 337 NHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
+ S + +KPF C CGK F R + + H +LH + K S
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGE---KPSGPS 44
Score = 39.4 bits (93), Expect = 1e-04
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K +KC C K F+ +AL H +HTG+K +
Sbjct: 2 SSGSS-GTGEK-----PFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 37.5 bits (88), Expect = 5e-04
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K +KC C K F+ AL H +HTG+K +
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 36.3 bits (85), Expect = 0.001
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 365 NHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCT 410
+ +K +KC C + F+ +AL H +HTG+K +
Sbjct: 2 SSGSSGTGEK---PFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 0.002
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 142 NHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
+ S + EKPF C C K F R+ ++ H ++ H G+ K S
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKL-HTGE-----KPSGPS 44
Score = 33.3 bits (77), Expect = 0.014
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E C CG+ F ++ L H H+ EKP
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.037
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
F C CGK F + L H +H+ +P
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 31.7 bits (73), Expect = 0.048
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
F C CG FS + L H H+ +KP S
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 31.0 bits (71), Expect = 0.11
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 204 DHQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K C C F+ + AL H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVH 31
Score = 29.8 bits (68), Expect = 0.26
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
KPFKC +C + F + LN H LHT
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHT 36
Score = 27.5 bits (62), Expect = 1.6
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +PF C C K F R+ + H + +H G+ K S
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHK-LHTGE-----KPSGPS 44
Score = 25.6 bits (57), Expect = 7.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLH 504
KPFKC +C + F + LN H LH
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLH 35
Score = 25.6 bits (57), Expect = 7.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLH 697
KPFKC +C + F + LN H LH
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLH 35
Score = 25.6 bits (57), Expect = 8.1
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 589 DHQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHGLK 627
TG+K C C ++ L H K+ H G K
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKL-HTGEK 39
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 40.2 bits (95), Expect = 5e-05
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 337 NHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
+ S ++ CS CGK F + + I H+R+H T + K S
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH-TGE--KPSGPS 44
Score = 39.1 bits (92), Expect = 1e-04
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
+ ++CS C K F + H+ +HTG+K +
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 36.4 bits (85), Expect = 0.001
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
E C+ CG+ F Q + H H+ EKP
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.002
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 365 NHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+ ++ ++CS C + F + H+ +HTG+K
Sbjct: 2 SSGSSGHGER---GHRCSDCGKFFLQASNFIQHRRIHTGEK 39
Score = 35.6 bits (83), Expect = 0.002
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
+ ++CS C K F H+ +HTG+K
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIHTGEK 39
Score = 35.2 bits (82), Expect = 0.003
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 142 NHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKK 180
+ S E+ C C K F + +H RI H G+K
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRI-HTGEK 39
Score = 33.3 bits (77), Expect = 0.013
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 499 KHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ C+ CGK FL +H IH+ +P
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.21
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
C+ CG F + H H+ +KP S
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 28.3 bits (64), Expect = 0.75
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYK 242
G++ H C+ C F + H + +H G K
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQH-RRIHTGEK 39
Score = 27.5 bits (62), Expect = 1.7
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKK 565
R C C K F + + H R +H G+K
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRR-IHTGEK 39
Score = 26.0 bits (58), Expect = 5.7
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLH 697
+ +C DC + FL +H+ +H
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIH 35
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 40.2 bits (95), Expect = 5e-05
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K YKC+ C K F+ + L HQ +HTG+K +
Sbjct: 2 SSGSS-GTGEK-----RYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 38.3 bits (90), Expect = 2e-04
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYK 377
S + +K + C+ CGK F R + + HQ++H +K
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSG 42
Score = 36.0 bits (84), Expect = 0.002
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E CN CG+ F + +L H H+ EKP
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.002
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K YKC+ C K F+ L HQ +HTG+K +
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.005
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+K YKC+ C +VF+ + L HQ +HTG+K
Sbjct: 3 SGSSGTGEK---RYKCNECGKVFSRNSQLSQHQKIHTGEK 39
Score = 34.0 bits (79), Expect = 0.007
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S + EK + C C K F R ++S+H +I H G+ K S
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKI-HTGE-----KPSGPS 44
Score = 32.1 bits (74), Expect = 0.040
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 499 KHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ + CN CGK F +L +H IH+ +P
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.17
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
+ CN CG +FS L H H+ +KP S
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.48
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K + CN C F+ L H
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQH 31
Score = 28.6 bits (65), Expect = 0.67
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ + + C C K F R ++ H + +H G+ K S
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQK-IHTGE-----KPSGPS 44
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 5e-05
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
S + +KP+ CS CGK F +++ + HQR+H + S
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGE---NPSGPS 44
Score = 39.8 bits (94), Expect = 6e-05
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K Y+CS C K+F + L HQ +HTG+ +
Sbjct: 2 SSGSS-GTGEK-----PYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS 44
Score = 37.1 bits (87), Expect = 5e-04
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLC 602
K Y+CS C K+F L HQ +HTG+
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 35.2 bits (82), Expect = 0.003
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S + EKP+ C C K F +K ++ H RI H G+ S
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRI-HTGE-----NPSGPS 44
Score = 35.2 bits (82), Expect = 0.003
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLC 409
+K Y+CS C + F + L HQ +HTG+
Sbjct: 3 SGSSGTGEK---PYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 34.1 bits (79), Expect = 0.008
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E C+ CG++F +K +L H H+ E P
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 31.7 bits (73), Expect = 0.053
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 512 CNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
C+ CGK+F+ K +L H IH+ P
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 31.0 bits (71), Expect = 0.079
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K + C+ C F K L H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
Score = 31.0 bits (71), Expect = 0.098
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 322 CNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
C+ CG F +K L H H+ + P S
Sbjct: 15 CSDCGKSFIKKSQLHVHQRIHTGENPSGPS 44
Score = 27.5 bits (62), Expect = 1.6
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P+ C C K F +K + H R +H G+ S
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQR-IHTGE-----NPSGPS 44
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 5e-05
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
K YKC+ C KAF + L HQ +HTG+K +
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 37.9 bits (89), Expect = 3e-04
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
S + +KP+ C+ CGK F+ + + HQ +H + K S
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGE---KPSGPS 44
Score = 37.1 bits (87), Expect = 7e-04
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K YKC+ C KAF L HQ +HTG+K +
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.003
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
T + K YKC+ C + F + L HQ +HTG+K
Sbjct: 3 SGSSG-TGE--KPYKCNECGKAFRAHSNLTTHQVIHTGEK 39
Score = 34.8 bits (81), Expect = 0.004
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S + EKP+ C C K F+ ++ H I H G+ K S
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVI-HTGE-----KPSGPS 44
Score = 33.6 bits (78), Expect = 0.009
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E CN CG+ FR L H + H+ EKP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.10
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 512 CNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
CN CGK F L H VIH+ +P
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.24
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYK 242
TG+K + CN C F L H +V+H G K
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTH-QVIHTGEK 39
Score = 29.4 bits (67), Expect = 0.37
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 322 CNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
CN CG F L H + H+ +KP S
Sbjct: 15 CNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 26.7 bits (60), Expect = 2.6
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P+ C C K F+ ++ H +H G+ K S
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQV-IHTGE-----KPSGPS 44
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 6e-05
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
Y+C C KAF+ L HQ H G+K +
Sbjct: 11 NPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 39.4 bits (93), Expect = 1e-04
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
S + + P+ C CGK F R+ +I+HQR H + K S
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGE---KPSGPS 44
Score = 37.1 bits (87), Expect = 6e-04
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
Y+C C KAF+ L HQ H G+K +
Sbjct: 11 NPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.003
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E C+ CG+ F +K++L++H +H+ EKP
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.004
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S + E P+ C C K F RK+++ H R H G+ K S
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRT-HAGE-----KPSGPS 44
Score = 34.4 bits (80), Expect = 0.006
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCT 410
+ Y+C C + F+ L HQ H G+K +
Sbjct: 3 SGSSGTGEN---PYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 31.7 bits (73), Expect = 0.049
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ C+ CGK F KY+L H H+ +P
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.14
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+ + C+ C F+ K L+ H
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISH 31
Score = 29.4 bits (67), Expect = 0.29
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
+ C+ CG FS K L +H +H+ +KP S
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.40
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ P+ C C K F RK + H R H G+ K S
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQR-THAGE-----KPSGPS 44
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 6e-05
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K ++C C K FT + L HQ VHTG+K +
Sbjct: 2 SSGSS-GSGEK-----PFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 38.3 bits (90), Expect = 2e-04
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
S S +KPF C CGKRF + + + +HQR+H + K S
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGE---KPSGPS 44
Score = 36.0 bits (84), Expect = 0.001
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K ++C C K FT L HQ VHTG+K +
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.003
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
+ E C CG+ F Q L +H H+ EKP
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.003
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+K ++C C + FT + L HQ VHTG+K
Sbjct: 3 SGSSGSGEK---PFQCEECGKRFTQNSHLHSHQRVHTGEK 39
Score = 33.7 bits (78), Expect = 0.009
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S S EKPF C C K+F + + H R+ H G+ K S
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRV-HTGE-----KPSGPS 44
Score = 31.0 bits (71), Expect = 0.11
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
F C CGK F L H +H+ +P
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.13
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 204 DHQYVHTGQKSHMCNLCSARFTCKGALLGH 233
+G+K C C RFT L H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSH 31
Score = 30.6 bits (70), Expect = 0.13
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
F C CG F++ +L +H H+ +KP S
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 28.7 bits (65), Expect = 0.64
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
S +PF C C K+F + + H R VH G+ K S
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQR-VHTGE-----KPSGPS 44
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 6e-05
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K YKCS C KAF L +H+ +HTG + +
Sbjct: 2 SSGSS-GSGEK-----PYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 38.6 bits (91), Expect = 2e-04
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYK 377
S S +KP+ CS CGK F R + H+R+H +
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSG 42
Score = 35.9 bits (84), Expect = 0.001
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K YKCS C KAF L +H+ +HTG + +
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 34.8 bits (81), Expect = 0.004
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S S EKP+ C C K F R +++H RI H G + S
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRI-HTGY-----RPSGPS 44
Score = 34.8 bits (81), Expect = 0.004
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
+ E C+ CG+ F + L H H+ +P
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 32.9 bits (76), Expect = 0.018
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+K YKCS C + F L +H+ +HTG +
Sbjct: 3 SGSSGSGEK---PYKCSECGKAFHRHTHLNEHRRIHTGYR 39
Score = 30.2 bits (69), Expect = 0.18
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 499 KHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ + C+ CGK F L H IH+ RP
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 28.6 bits (65), Expect = 0.63
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
S +P+ C C K F R + H R +H G + S
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRR-IHTGY-----RPSGPS 44
Score = 28.2 bits (64), Expect = 0.96
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
+ C+ CG F +L H H+ +P S
Sbjct: 13 YKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 26.7 bits (60), Expect = 2.7
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYK 242
+G+K + C+ C F L H ++ H GY+
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRI-HTGYR 39
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 39.8 bits (94), Expect = 6e-05
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 337 NHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYK 377
+ S S +KPF C CGK F + +HQR H +K
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSG 42
Score = 39.8 bits (94), Expect = 7e-05
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
K +KC C K F + HQ H+G+K +
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 37.1 bits (87), Expect = 5e-04
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K +KC C K F HQ H+G+K +
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 36.8 bits (86), Expect = 8e-04
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 365 NHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCT 410
+ +K +KC C + F + HQ H+G+K +
Sbjct: 2 SSGSSGSGEK---PFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 34.5 bits (80), Expect = 0.005
Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 142 NHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
+ S S EKPF C C K F + H R H G+ K S
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRS-HSGE-----KPSGPS 44
Score = 32.9 bits (76), Expect = 0.019
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
+ E C CG+ F + +H SHS EKP
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 31.8 bits (73), Expect = 0.055
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCG 354
F C CG F +H SHS +KP S G
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
Score = 31.0 bits (71), Expect = 0.084
Identities = 6/29 (20%), Positives = 8/29 (27%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
+G+K C C F H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
Score = 31.0 bits (71), Expect = 0.093
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
F C CGK F + H HS +P
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 27.1 bits (61), Expect = 1.9
Identities = 13/48 (27%), Positives = 15/48 (31%), Gaps = 6/48 (12%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
S +PF C C K F H R H G+ K S
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQR-SHSGE-----KPSGPS 44
Score = 25.6 bits (57), Expect = 8.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLH 504
KPFKC++C + F T H+ H
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 25.6 bits (57), Expect = 8.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLH 697
KPFKC++C + F T H+ H
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSH 35
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 39.8 bits (94), Expect = 6e-05
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMC 217
G+K ++C+ C K+F+ + L HQ +HTG+K
Sbjct: 2 SSGSS-GTGEK-----PFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 39.0 bits (92), Expect = 1e-04
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
S + +KPF C+ CGK F + + HQR+H + K S
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGE---KPSGPS 44
Score = 37.1 bits (87), Expect = 7e-04
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K ++C+ C K+F+ L HQ +HTG+K +
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.003
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S + EKPF C C K F +++ H RI H G+ K S
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRI-HTGE-----KPSGPS 44
Score = 35.2 bits (82), Expect = 0.003
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCT 410
+K ++C+ C + F+ + L HQ +HTG+K +
Sbjct: 3 SGSSGTGEK---PFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.010
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E C CG++F +L H H+ EKP
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.040
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
F C CGK+F +L H IH+ +P
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 30.5 bits (70), Expect = 0.11
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K C C F+ L H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATH 31
Score = 30.2 bits (69), Expect = 0.19
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
F C CG FS L H H+ +KP S
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.28
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +PF C C K F +A H R +H G+ K S
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQR-IHTGE-----KPSGPS 44
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 6e-05
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMC 217
K Y+C+ C KAFT + L HQ +HTG+K
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 38.6 bits (91), Expect = 2e-04
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
S + +KP+ C+ CGK F + + HQ++H T + K S
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH-TGE--KPSGPS 44
Score = 38.3 bits (90), Expect = 3e-04
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLC 602
K Y+C+ C KAFT L HQ +HTG+K
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 7e-04
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
T + K Y+C+ C + FT + L HQ +HTG+K
Sbjct: 3 SGSSG-TGE--KPYRCAECGKAFTDRSNLFTHQKIHTGEK 39
Score = 34.4 bits (80), Expect = 0.005
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S + EKP+ C C K F + + H +I H G+ K S
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKI-HTGE-----KPSGPS 44
Score = 32.9 bits (76), Expect = 0.021
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E C CG+ F + L H H+ EKP
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.031
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 204 DHQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K + C C FT + L H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTH 31
Score = 30.6 bits (70), Expect = 0.11
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 512 CNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
C CGK F + L H IH+ +P
Sbjct: 15 CAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.24
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
+ C CG F+++ L H H+ +KP S
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.40
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
KP++C +C + F + L H+ +HT
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHT 36
Score = 27.1 bits (61), Expect = 2.2
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P+ C C K F + ++ H + +H G+ K S
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQK-IHTGE-----KPSGPS 44
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 7e-05
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 337 NHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
+ S + +KPF CS C K F ++ +I HQR H + K S
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGE---KPSGPS 44
Score = 38.6 bits (91), Expect = 1e-04
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K ++CS C KAF L HQ HTG+K +
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 38.6 bits (91), Expect = 2e-04
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMC 217
K ++CS C KAF + L HQ HTG+K
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 7e-04
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 365 NHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCT 410
+ +K ++CS C + F + L HQ HTG+K +
Sbjct: 2 SSGSSGTGEK---PFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.005
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 142 NHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
+ S + EKPF C C+K F K + H R H G+ K S
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRT-HTGE-----KPSGPS 44
Score = 34.0 bits (79), Expect = 0.008
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E C+ C + F K L+ H +H+ EKP
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 32.8 bits (76), Expect = 0.023
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
F C+ C F+ K L H +H+ +KP S
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.029
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
F C+ C K F K L H H+ +P
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.059
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K C+ C F K L+ H
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVH 31
Score = 28.6 bits (65), Expect = 0.58
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +PF C C+K F K ++ H R H G+ K S
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQR-THTGE-----KPSGPS 44
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 39.4 bits (93), Expect = 7e-05
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMC 217
K Y+C+ C KAF + L H+ H G
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 38.3 bits (90), Expect = 2e-04
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 337 NHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKS 378
+ S S +KP+ C+ CGK F ++ +I H+R H S
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 37.9 bits (89), Expect = 3e-04
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLC 602
K Y+C+ C KAF + L H+ H G
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 34.0 bits (79), Expect = 0.008
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
+ E CN CG+ F K L+ H +H+ S
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 33.7 bits (78), Expect = 0.010
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 365 NHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+ +K Y+C+ C + F + L H+ H G
Sbjct: 2 SSGSSGSGEK---PYECNECGKAFIWKSLLIVHERTHAGVS 39
Score = 32.1 bits (74), Expect = 0.031
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 512 CNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
CN CGK F+ K L H H+ S
Sbjct: 15 CNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 30.2 bits (69), Expect = 0.17
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 322 CNSCGLIFSEKKYLRNHMISHSTQKPFSC 350
CN CG F K L H +H+ S
Sbjct: 15 CNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 30.2 bits (69), Expect = 0.18
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
+G+K + CN C F K L+ H
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVH 31
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 39.4 bits (93), Expect = 7e-05
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKS 378
S + + P+ C CGK F R++ +++HQ+ H + S
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 37.5 bits (88), Expect = 4e-04
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMC 217
Y+C C K F+ L HQ H+GQ
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 35.2 bits (82), Expect = 0.003
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 127 CNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
C CG+ F +K +L++H +HS + S
Sbjct: 15 CCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 34.0 bits (79), Expect = 0.008
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLC 602
Y+C C K F+ L HQ H+GQ
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 33.6 bits (78), Expect = 0.011
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKK 180
S + E P+ C C K F RK ++ H + H G+
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKT-HSGQS 39
Score = 33.6 bits (78), Expect = 0.011
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 512 CNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
C CGK F K +L H HS S
Sbjct: 15 CCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 30.2 bits (69), Expect = 0.15
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
Y+C C +VF+ L HQ H+GQ
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQKTHSGQS 39
Score = 30.2 bits (69), Expect = 0.16
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 322 CNSCGLIFSEKKYLRNHMISHSTQKPFSC 350
C CG +FS K L +H +HS Q S
Sbjct: 15 CCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 25.9 bits (58), Expect = 5.3
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+ + C C F+ K L+ H
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSH 31
Score = 25.5 bits (57), Expect = 7.5
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKK 565
+ P+ C C K F RK + H + H G+
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQK-THSGQS 39
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 8e-05
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K + C C KAF+ L H+ +HTG+K +
Sbjct: 2 SSGSS-GTGEK-----PFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 38.7 bits (91), Expect = 2e-04
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
S + +KPF C CGK F G+ H+R+H + K S
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGE---KPSGPS 44
Score = 36.0 bits (84), Expect = 0.001
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K + C C KAF+ L H+ +HTG+K +
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.003
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+K + C C + F+ L H+ +HTG+K
Sbjct: 3 SGSSGTGEK---PFDCIDCGKAFSDHIGLNQHRRIHTGEK 39
Score = 34.0 bits (79), Expect = 0.008
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S + EKPF C C K F +++H RI H G+ K S
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRI-HTGE-----KPSGPS 44
Score = 33.6 bits (78), Expect = 0.010
Identities = 12/42 (28%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E C CG+ F L H H+ EKP
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.091
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
F C CGK F L +H IH+ +P
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.12
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
F C CG FS+ L H H+ +KP S
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.25
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYK 242
TG+K C C F+ L H + +H G K
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQH-RRIHTGEK 39
Score = 28.6 bits (65), Expect = 0.56
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
KPF C DC + F I LN+H+ +HT
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHT 36
Score = 26.7 bits (60), Expect = 3.3
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +PF C C K F + H R +H G+ K S
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRR-IHTGE-----KPSGPS 44
Score = 25.6 bits (57), Expect = 9.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLH 504
KPF C DC + F I LN+H+ +H
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 25.6 bits (57), Expect = 9.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLH 697
KPF C DC + F I LN+H+ +H
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 25.6 bits (57), Expect = 9.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 289 KPFKCDDCFQCFLSKILLNQHKK 311
KPF C DC + F I LNQH++
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRR 33
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 8e-05
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 171 HDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
GKK YKC+ C K FT + L H+ +HTG+K +
Sbjct: 3 SGSS-GTGKK-----PYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 36.7 bits (86), Expect = 7e-04
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYK 377
S + +KP+ C+ CGK F + + + H+ +H +K
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSG 42
Score = 35.6 bits (83), Expect = 0.002
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K YKC+ C K FT L H+ +HTG+K +
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.004
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T + CN CG+ F Q L H H+ EKP
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.008
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
KK YKC+ C +VFT + L H+ +HTG+K
Sbjct: 3 SGSSGTGKK---PYKCNECGKVFTQNSHLARHRGIHTGEK 39
Score = 32.9 bits (76), Expect = 0.017
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S + +KP+ C C K F + +++H I H G+ K S
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGI-HTGE-----KPSGPS 44
Score = 30.2 bits (69), Expect = 0.18
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ CN CGK F L RH IH+ +P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.39
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
+ CN CG +F++ +L H H+ +KP S
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 27.1 bits (61), Expect = 2.4
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K + CN C FT L H
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARH 31
Score = 26.3 bits (59), Expect = 4.6
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P+ C C K F + +A H +H G+ K S
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRG-IHTGE-----KPSGPS 44
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 39.4 bits (93), Expect = 9e-05
Identities = 13/48 (27%), Positives = 16/48 (33%), Gaps = 6/48 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMC 217
G K Y C+ C KAF + L H HTG+
Sbjct: 2 SSGSS-GTGMK-----PYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 37.9 bits (89), Expect = 3e-04
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T CN CG+ FR K L+ H +H+ E S
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 37.5 bits (88), Expect = 5e-04
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 337 NHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYK 377
+ S + KP+ C+ CGK F+ ++ +I H R H +
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPS 42
Score = 36.7 bits (86), Expect = 8e-04
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLC 602
K Y C+ C KAF L H HTG+
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 33.2 bits (77), Expect = 0.015
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 365 NHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+ K Y C+ C + F + L H HTG+
Sbjct: 2 SSGSSGTGMK---PYVCNECGKAFRSKSYLIIHTRTHTGES 39
Score = 32.1 bits (74), Expect = 0.030
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 142 NHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKC 189
+ S + KP+ C C K F+ K + H R H G+
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRT-HTGE-----SGPSS 43
Score = 31.7 bits (73), Expect = 0.042
Identities = 11/29 (37%), Positives = 12/29 (41%)
Query: 512 CNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
CN CGK F K L H H+ S
Sbjct: 15 CNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 31.7 bits (73), Expect = 0.047
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 322 CNSCGLIFSEKKYLRNHMISHSTQKPFSC 350
CN CG F K YL H +H+ + S
Sbjct: 15 CNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 30.9 bits (71), Expect = 0.095
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG K ++CN C F K L+ H
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIH 31
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 39.4 bits (93), Expect = 9e-05
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSH 215
K Y C +C F HL L+ H +HTG
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 38.6 bits (91), Expect = 1e-04
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLH 370
S +KP+ C +CG RF+ + +H R+H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 37.9 bits (89), Expect = 3e-04
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKK 180
S EKP+ C IC +F+ + H RI H G
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRI-HTGSG 38
Score = 37.1 bits (87), Expect = 5e-04
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K Y C +C F +L L+ H +HTG
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSG 38
Score = 35.2 bits (82), Expect = 0.003
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K Y C +C F HL L+ H +HTG
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSG 38
Score = 34.8 bits (81), Expect = 0.004
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFS 539
+ C CG F H L+ H+ IH+ + P S
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 34.0 bits (79), Expect = 0.006
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 126 TCNLCGQTFRQKFRLLNHMISHSTEKPFS 154
C +CG FR L +H+ H+ P S
Sbjct: 13 PCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 31.7 bits (73), Expect = 0.051
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYK 242
G+K + C +C RF L H+++ H G
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRI-HTGSG 38
Score = 30.5 bits (70), Expect = 0.13
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFS 349
+ C CG F + L++H+ H+ P S
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 28.6 bits (65), Expect = 0.66
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 397 HQFVHTGQKTRLCTMCPAIFASIGGLRSHMKI 428
G+K C +C F + L+SH++I
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRI 33
Score = 28.2 bits (64), Expect = 0.69
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKK 565
+P+ C +C +F+ Q + H R +H G
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLR-IHTGSG 38
Score = 27.5 bits (62), Expect = 1.3
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 590 HQFVHTGQKTHLCTMCPASYATIGGLRSHIKI 621
G+K + C +C + + L+SH++I
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRI 33
Score = 27.1 bits (61), Expect = 1.8
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLH 504
KP+ C+ C RF L H +H
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 27.1 bits (61), Expect = 1.8
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLH 697
KP+ C+ C RF L H +H
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIH 34
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 39.5 bits (93), Expect = 1e-04
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMC 217
KS++C C + FT + L HQ +HTG+K
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 38.7 bits (91), Expect = 1e-04
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 337 NHMISHSTQKPFSCSLCGKRFKRENGVINHQRLH 370
+ S S+ K C CG+ F ++ + HQR+H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 38.7 bits (91), Expect = 2e-04
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
KS++C C + FT L HQ +HTG+K +
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 0.002
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 142 NHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKK 180
+ S S+ K C C + F K +++H RI H G+K
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRI-HTGEK 39
Score = 34.8 bits (81), Expect = 0.003
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 365 NHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+ + K S++C C R FT + L HQ +HTG+K
Sbjct: 2 SSGSSGSSTK---SHQCHECGRGFTLKSHLNQHQRIHTGEK 39
Score = 34.1 bits (79), Expect = 0.007
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
+ C+ CG+ F K L H H+ EKP
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 31.4 bits (72), Expect = 0.073
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
C+ CG+ F K L +H IH+ +P
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.15
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
+ KSH C+ C FT K L H
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQH 31
Score = 30.2 bits (69), Expect = 0.15
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
C+ CG F+ K +L H H+ +KP S
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 29.8 bits (68), Expect = 0.22
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
K +C +C + F K LN+H+ +HT
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHT 36
Score = 26.7 bits (60), Expect = 3.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLH 504
K +C +C + F K LN+H+ +H
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 26.7 bits (60), Expect = 3.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLH 697
K +C +C + F K LN+H+ +H
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 26.4 bits (59), Expect = 3.6
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKK 565
S+ + C C + F K + H R +H G+K
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQR-IHTGEK 39
Score = 26.0 bits (58), Expect = 6.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 289 KPFKCDDCFQCFLSKILLNQHKK 311
K +C +C + F K LNQH++
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQR 33
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 1e-04
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K YKC C K F + L HQ +HTG+K +
Sbjct: 2 SSGSS-GTGEK-----PYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 38.2 bits (90), Expect = 2e-04
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYK 377
S + +KP+ C CGK F+R + + HQ +H +K
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSG 42
Score = 35.9 bits (84), Expect = 0.002
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E C+ CG+ FR+ L H + H+ EKP
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 35.5 bits (83), Expect = 0.002
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K YKC C K F L HQ +HTG+K +
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.007
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
S + EKP+ C C K F+R +++H I H G+ K S
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLI-HTGE-----KPSGPS 44
Score = 34.0 bits (79), Expect = 0.007
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+K YKC C +VF + L HQ +HTG+K
Sbjct: 3 SGSSGTGEK---PYKCHECGKVFRRNSHLARHQLIHTGEK 39
Score = 30.1 bits (69), Expect = 0.16
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ C+ CGK F L RH +IH+ +P
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.29
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
+ C+ CG +F +L H + H+ +KP S
Sbjct: 13 YKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 29.0 bits (66), Expect = 0.48
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P+ C C K F+R +A H +H G+ K S
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQL-IHTGE-----KPSGPS 44
Score = 28.6 bits (65), Expect = 0.72
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K + C+ C F L H
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARH 31
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 1e-04
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 171 HDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K YKC+ C K FT + L H+ +HTG+K +
Sbjct: 3 SGSS-GTGEK-----PYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 37.8 bits (89), Expect = 3e-04
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 337 NHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYK 377
+ S + +KP+ C+ CGK F + + ++ H+ +H +K
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSG 42
Score = 35.9 bits (84), Expect = 0.002
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K YKC+ C K FT L H+ +HTG+K +
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.004
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E CN CG+ F Q L+ H H+ EKP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.008
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 365 NHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+ +K YKC+ C +VFT + L H+ +HTG+K
Sbjct: 2 SSGSSGTGEK---PYKCNECGKVFTQNSHLVRHRGIHTGEK 39
Score = 33.6 bits (78), Expect = 0.012
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 142 NHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
+ S + EKP+ C C K F + + +H I H G+ K S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGI-HTGE-----KPSGPS 44
Score = 30.5 bits (70), Expect = 0.15
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ CN CGK F L RH IH+ +P
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.29
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
+ CN CG +F++ +L H H+ +KP S
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 28.2 bits (64), Expect = 0.92
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P+ C C K F + + H +H G+ K S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRG-IHTGE-----KPSGPS 44
Score = 28.2 bits (64), Expect = 0.96
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K + CN C FT L+ H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRH 31
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 1e-04
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 337 NHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYK 377
+ S + +KP+SC++CGK F + H R+H + +
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSG 42
Score = 39.0 bits (92), Expect = 1e-04
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
G+K Y C++C KAF A L H VHT + +
Sbjct: 2 SSGSS-GTGEK-----PYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 37.1 bits (87), Expect = 7e-04
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E +CN+CG+ F L H+ H+ E
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 36.7 bits (86), Expect = 0.001
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K Y C++C KAF L H VHT + +
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 36.0 bits (84), Expect = 0.001
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 142 NHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
+ S + EKP+SC +C K F +++H R+ H + S
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRV-HTQE-----TLSGPS 44
Score = 33.6 bits (78), Expect = 0.012
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 365 NHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+ +K Y C++C + F A L H VHT +
Sbjct: 2 SSGSSGTGEK---PYSCNVCGKAFVLSAHLNQHLRVHTQET 39
Score = 30.6 bits (70), Expect = 0.14
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 499 KHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+ +SCN CGK F+ L +H+ +H+
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 30.6 bits (70), Expect = 0.15
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
++CN CG F +L H+ H+ + S
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 28.6 bits (65), Expect = 0.62
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYK 242
TG+K + CN+C F L H++V H
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRV-HTQET 39
Score = 28.6 bits (65), Expect = 0.63
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P+SC VC K F + H R VH + L S
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLR-VHTQETL-----SGPS 44
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 39.0 bits (92), Expect = 1e-04
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K YKC C F +A L H +HTG
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSG 38
Score = 37.9 bits (89), Expect = 3e-04
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K YKC C F + L H +HTG
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSG 38
Score = 37.9 bits (89), Expect = 3e-04
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLH 370
S +KP+ C CG RF + + H +H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 36.3 bits (85), Expect = 0.001
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKK 180
S EKP+ C C +F + + H I H G
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLI-HTGSG 38
Score = 35.2 bits (82), Expect = 0.003
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K YKC C F +A L H +HTG
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSG 38
Score = 32.1 bits (74), Expect = 0.037
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 127 CNLCGQTFRQKFRLLNHMISHSTEKPFS 154
C CG F Q L H++ H+ P S
Sbjct: 14 CETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 31.3 bits (72), Expect = 0.067
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYK 242
G+K + C C ARF L H+ + H G
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLI-HTGSG 38
Score = 30.2 bits (69), Expect = 0.17
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
KP+KC+ C F+ L H L+HT
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHT 35
Score = 29.8 bits (68), Expect = 0.19
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFS 539
+ C CG F+ LR H++IH+ + P S
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 29.0 bits (66), Expect = 0.43
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFS 349
+ C +CG F + +LR H++ H+ P S
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 28.3 bits (64), Expect = 0.87
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLH 504
KP+KC+ C RF+ L H L+H
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIH 34
Score = 28.3 bits (64), Expect = 0.87
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLH 697
KP+KC+ C RF+ L H L+H
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIH 34
Score = 26.7 bits (60), Expect = 2.6
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 397 HQFVHTGQKTRLCTMCPAIFASIGGLRSHMKIVHHGLK 434
G+K C C A F + LR+H+ I H G
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLI-HTGSG 38
Score = 26.3 bits (59), Expect = 3.4
Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKK 565
+P+ C C +F + + H +H G
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVL-IHTGSG 38
Score = 25.6 bits (57), Expect = 8.2
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 590 HQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHGLK 627
G+K + C C A + + LR+H+ I H G
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLI-HTGSG 38
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 1e-04
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 337 NHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
+ S + ++P C+ CGK F + +I HQR+H + K S
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGE---KPSGPS 44
Score = 38.6 bits (91), Expect = 2e-04
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCN 218
+ +KC+ C K+F A L HQ +HTG+K +
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 36.3 bits (85), Expect = 0.001
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLCT 603
+ +KC+ C K+F L HQ +HTG+K +
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.003
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E CN CG++F Q L+ H H+ EKP
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.006
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 142 NHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
+ S + E+P C C K F + + +H RI H G+K S
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRI-HTGEKP-----SGPS 44
Score = 34.0 bits (79), Expect = 0.008
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 365 NHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+ ++ +KC+ C + F A L HQ +HTG+K
Sbjct: 2 SSGSSGTGER---PHKCNECGKSFIQSAHLIQHQRIHTGEK 39
Score = 30.9 bits (71), Expect = 0.11
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
CN CGK+F+ L +H IH+ +P
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.13
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
CN CG F + +L H H+ +KP S
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 30.2 bits (69), Expect = 0.19
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG++ H CN C F L+ H
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQH 31
Score = 29.4 bits (67), Expect = 0.37
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 6/49 (12%)
Query: 527 RHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ RP C C K F + + H R +H G+ K S
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQR-IHTGE-----KPSGPS 44
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 39.0 bits (92), Expect = 1e-04
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMC 217
K Y+C+ C KAF + L HQ HTG+
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 37.5 bits (88), Expect = 4e-04
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYK 377
S + +KP+ C+ C K F ++ ++ HQR H +
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPS 42
Score = 37.1 bits (87), Expect = 6e-04
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLC 602
K Y+C+ C KAF L HQ HTG+
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 35.5 bits (83), Expect = 0.002
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E CN C + F K L+ H +H+ E S
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 35.1 bits (82), Expect = 0.003
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+K Y+C+ C + F + L HQ HTG+
Sbjct: 3 SGSSGTGEK---PYECNECQKAFNTKSNLMVHQRTHTGES 39
Score = 32.8 bits (76), Expect = 0.019
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKC 189
S + EKP+ C C+K F K + H R H G+
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRT-HTGE-----SGPSS 43
Score = 31.7 bits (73), Expect = 0.043
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
TG+K + CN C F K L+ H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVH 31
Score = 31.3 bits (72), Expect = 0.057
Identities = 10/29 (34%), Positives = 11/29 (37%)
Query: 512 CNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
CN C K F K L H H+ S
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 30.5 bits (70), Expect = 0.11
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 322 CNSCGLIFSEKKYLRNHMISHSTQKPFSC 350
CN C F+ K L H +H+ + S
Sbjct: 15 CNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 25.1 bits (56), Expect = 9.8
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 6/47 (12%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKC 574
+ +P+ C C+K F K ++ H R H G+
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQR-THTGE-----SGPSS 43
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 38.7 bits (91), Expect = 1e-04
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
+ Y+C C K+F +L H+ +HTG
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHTGSG 37
Score = 37.2 bits (87), Expect = 5e-04
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
+ Y+C C K+F G+L H+ +HTG
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHTGSG 37
Score = 36.8 bits (86), Expect = 8e-04
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 341 SHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVY 376
S Q+ + C CGK F+++ + H+R+H
Sbjct: 4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 33.3 bits (77), Expect = 0.011
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+ Y+C C + F +L H+ +HTG
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHTGSG 37
Score = 32.5 bits (75), Expect = 0.020
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 127 CNLCGQTFRQKFRLLNHMISHSTEKPFS 154
C CG++FRQK L H H+ P S
Sbjct: 13 CQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 31.8 bits (73), Expect = 0.037
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 146 SHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKK 180
S ++ + C C K F++K ++ H+RI H G
Sbjct: 4 GSSGQRVYECQECGKSFRQKGSLTLHERI-HTGSG 37
Score = 30.6 bits (70), Expect = 0.13
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFS 539
+ C CGK+F K L H IH+ + P S
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 26.4 bits (59), Expect = 4.2
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFS 349
+ C CG F +K L H H+ P S
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGPSS 40
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 38.8 bits (91), Expect = 1e-04
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 341 SHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKS 378
S +KP+SC+ C + F N ++ HQ++H K S
Sbjct: 4 GSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 36.5 bits (85), Expect = 8e-04
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMC 217
K Y C+ C + F+ L HQ +HT +
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 34.6 bits (80), Expect = 0.004
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 146 SHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKK 180
S EKP+SC CK+ F + + +H ++ H K
Sbjct: 4 GSSGEKPYSCAECKETFSDNNRLVQHQKM-HTVKS 37
Score = 33.1 bits (76), Expect = 0.017
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKTHLC 602
K Y C+ C + F+ L HQ +HT +
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 32.3 bits (74), Expect = 0.033
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLC 409
K Y C+ C F+ L HQ +HT +
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 30.8 bits (70), Expect = 0.10
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
+SC C +TF +L +H +H+ S
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 30.0 bits (68), Expect = 0.19
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 126 TCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
+C C +TF RL+ H H+ + S
Sbjct: 12 SCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 27.3 bits (61), Expect = 1.5
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 532 HSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKK 565
S +P+SC CK+ F + H + +H K
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQK-MHTVKS 37
Score = 26.9 bits (60), Expect = 2.3
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 209 HTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYKRP 244
+G+K + C C F+ L+ H K+ H P
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKM-HTVKSGP 39
Score = 26.5 bits (59), Expect = 3.3
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
KP+ C +C + F L +H+ +HT
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 25.4 bits (56), Expect = 9.2
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSC 350
++C C FS+ L H H+ + S
Sbjct: 11 YSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 38.3 bits (90), Expect = 2e-04
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVY 376
S +KP+ C CGK F ++ +I H R+H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 37.9 bits (89), Expect = 3e-04
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Query: 171 HDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
G+K Y+C C KAF+ +L H VHTG
Sbjct: 2 SSGS-SGGEK-----PYRCDQCGKAFSQKGSLIVHIRVHTGSG 38
Score = 37.5 bits (88), Expect = 4e-04
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 555 GHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
G G+K Y+C C KAF+ G+L H VHTG
Sbjct: 1 GSSGS-SGGEK-----PYRCDQCGKAFSQKGSLIVHIRVHTGSG 38
Score = 36.0 bits (84), Expect = 0.001
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+K Y+C C + F+ +L H VHTG
Sbjct: 2 SSGSSGGEK---PYRCDQCGKAFSQKGSLIVHIRVHTGSG 38
Score = 34.5 bits (80), Expect = 0.005
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFS 154
E C+ CG+ F QK L+ H+ H+ P S
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 34.1 bits (79), Expect = 0.007
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYK 242
G+K + C+ C F+ KG+L+ HI+V H G
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRV-HTGSG 38
Score = 32.9 bits (76), Expect = 0.015
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKK 180
S EKP+ C C K F +K + H R+ H G
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRV-HTGSG 38
Score = 31.4 bits (72), Expect = 0.055
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFS 539
+ C+ CGK F K L HI +H+ + P S
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 29.1 bits (66), Expect = 0.39
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFS 349
+ C+ CG FS+K L H+ H+ P S
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 27.5 bits (62), Expect = 1.6
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 590 HQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHGLK 627
G+K + C C +++ G L HI++ H G
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRV-HTGSG 38
Score = 27.1 bits (61), Expect = 2.2
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 397 HQFVHTGQKTRLCTMCPAIFASIGGLRSHMKIVHHGLK 434
G+K C C F+ G L H+++ H G
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRV-HTGSG 38
Score = 26.8 bits (60), Expect = 2.4
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKK 565
+P+ C C K F +K + H R VH G
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIR-VHTGSG 38
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 38.3 bits (90), Expect = 2e-04
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 337 NHMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
+ S + +KP+ C CGK F + +I H R + T + K S
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGE--KPSGPS 45
Score = 37.2 bits (87), Expect = 5e-04
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 142 NHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
+ S + +KP+ C C K F + + +H R H G+ K S
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGE-----KPSGPS 45
Score = 37.2 bits (87), Expect = 6e-04
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 171 HDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQ-YVHTGQKSHMCN 218
GKK Y+C C KAF +L H Y HTG+K +
Sbjct: 3 SGSS-GTGKK-----PYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 34.1 bits (79), Expect = 0.008
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYK 242
TG+K + C C F +L+ H + H G K
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEK 40
Score = 33.7 bits (78), Expect = 0.009
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 7/51 (13%)
Query: 554 AGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQ-FVHTGQKTHLCT 603
GKK Y+C C KAF +L H + HTG+K +
Sbjct: 1 GSSGSS-GTGKK-----PYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 32.9 bits (76), Expect = 0.020
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 365 NHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQ-FVHTGQK 405
+ KK Y+C C + F +L H + HTG+K
Sbjct: 2 SSGSSGTGKK---PYECIECGKAFIQNTSLIRHWRYYHTGEK 40
Score = 31.8 bits (73), Expect = 0.056
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHM-ISHSTEKPFSCP 156
T + C CG+ F Q L+ H H+ EKP
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 31.4 bits (72), Expect = 0.077
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +P+ C C K F + + H R H G+ K S
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGE-----KPSGPS 45
Score = 29.1 bits (66), Expect = 0.40
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 512 CNYCGKTFLHKYKLRRHI-VIHSTARPFSCP 541
C CGK F+ L RH H+ +P
Sbjct: 15 CIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 27.1 bits (61), Expect = 1.9
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 320 FTCNSCGLIFSEKKYLRNHM-ISHSTQKPFSCS 351
+ C CG F + L H H+ +KP S
Sbjct: 13 YECIECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 27.1 bits (61), Expect = 2.5
Identities = 11/38 (28%), Positives = 13/38 (34%)
Query: 397 HQFVHTGQKTRLCTMCPAIFASIGGLRSHMKIVHHGLK 434
TG+K C C F L H + H G K
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEK 40
Score = 26.0 bits (58), Expect = 5.2
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 590 HQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHGLK 627
TG+K + C C ++ L H + H G K
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEK 40
Score = 25.6 bits (57), Expect = 7.4
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 289 KPFKCDDCFQCFLSKILLNQHKKQMH 314
KP++C +C + F+ L +H + H
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYH 36
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 37.6 bits (88), Expect = 3e-04
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
Y C C K+FT +L HQ +
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVHQRSCSQSG 38
Score = 37.3 bits (87), Expect = 5e-04
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 341 SHSTQKPFSCSLCGKRFKRENGVINHQRLH 370
S + P+ C CGK F + + HQR
Sbjct: 5 SSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 36.9 bits (86), Expect = 7e-04
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
Y C C K+FT G+L HQ +
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVHQRSCSQSG 38
Score = 36.1 bits (84), Expect = 0.001
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 126 TCNLCGQTFRQKFRLLNHMISHSTEKPFS 154
C CG++F Q+ L H S S P S
Sbjct: 13 LCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 34.2 bits (79), Expect = 0.006
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 146 SHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKK 180
S E P+ C C K F ++ ++ H R
Sbjct: 5 SSGGETPYLCGQCGKSFTQRGSLAVHQRS-CSQSG 38
Score = 33.4 bits (77), Expect = 0.011
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
Y C C + FT +L HQ +
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVHQRSCSQSG 38
Score = 32.3 bits (74), Expect = 0.029
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFS 539
+ C CGK+F + L H S + P S
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 31.1 bits (71), Expect = 0.074
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFS 349
+ C CG F+++ L H S S P S
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 27.2 bits (61), Expect = 1.6
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGH 233
G+ ++C C FT +G+L H
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVH 30
Score = 26.9 bits (60), Expect = 2.8
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 532 HSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKK 565
P+ C C K F ++ +A H R
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQR-SCSQSG 38
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 37.3 bits (87), Expect = 6e-04
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Query: 142 NHMISHSTEKPFSC--PICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCS 190
+ S + EKPF+C P C +F R E+S+H R H G K S
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS-HSG-----VKPSGPS 46
Score = 34.6 bits (80), Expect = 0.005
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 337 NHMISHSTQKPFSCS--LCGKRFKRENGVINHQRLHQTKKVYKSYKCS 382
+ S + +KPF+C+ CG RF R + + H+R H K S
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSG---VKPSGPS 46
Score = 33.8 bits (78), Expect = 0.010
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 510 FSCNY--CGKTFLHKYKLRRHIVIHSTARPFSC 540
F+C + CG F +L RH HS +P
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 28.8 bits (65), Expect = 0.50
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 8/50 (16%)
Query: 528 HIVIHSTARPFSC--PVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCS 575
+ +PF+C P C +F R +++ H R H G K S
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRR-SHSG-----VKPSGPS 46
Score = 28.4 bits (64), Expect = 0.93
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 570 KSYKCS--LCPKAFTYLGALEDHQFVHTGQKTHLCT 603
K + C+ C F+ L H+ H+G K +
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 27.7 bits (62), Expect = 1.3
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 320 FTCN--SCGLIFSEKKYLRNHMISHSTQKPFSCS 351
F C CG FS L H SHS KP S
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 27.3 bits (61), Expect = 1.9
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 130 CGQTFRQKFRLLNHMISHSTEKPFSC 155
CG F + L H SHS KP
Sbjct: 20 CGWRFSRSDELSRHRRSHSGVKPSGP 45
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 37.2 bits (85), Expect = 7e-04
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 147 HSTEKPFSCPICKKQFKRKHEVSKHDRIVHQG 178
S EKP+SCP+C +FKRK +S H R
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 34.1 bits (77), Expect = 0.008
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 342 HSTQKPFSCSLCGKRFKRENGVINHQRLHQ 371
S +KP+SC +CG RFKR++ + H R H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
Score = 33.4 bits (75), Expect = 0.013
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 532 HSTARPFSCPVCKKQFKRKQDVAGHDRVVHQG 563
S +P+SCPVC +FKRK ++ H R
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 25.6 bits (55), Expect = 7.9
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 504 HFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFSCP 541
+ +SC CG F K ++ H+ H + S P
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGP 42
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 36.8 bits (86), Expect = 7e-04
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKS 378
S + K ++C+ CGK F R + HQ++H K S
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 36.8 bits (86), Expect = 7e-04
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 170 KHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMC 217
K SY C+ C KAFT + L HQ +HT +
Sbjct: 2 SSGSS-GTDSK-----SYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 34.9 bits (81), Expect = 0.004
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
KSY C+ C KAFT + L HQ +HT +
Sbjct: 11 KSYNCNECGKAFTRIFHLTRHQKIHTRKS 39
Score = 34.1 bits (79), Expect = 0.008
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 366 HQRLHQTKKVYKSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K SY C+ C + FT + L HQ +HT +
Sbjct: 3 SGSSGTDSK---SYNCNECGKAFTRIFHLTRHQKIHTRKS 39
Score = 32.6 bits (75), Expect = 0.025
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 115 KHKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T CN CG+ F + F L H H+ + S
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 31.8 bits (73), Expect = 0.048
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKK 180
S + K ++C C K F R +++H +I H K
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKI-HTRKS 39
Score = 30.6 bits (70), Expect = 0.100
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 499 KHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
D ++CN CGK F + L RH IH+ S
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 30.2 bits (69), Expect = 0.18
Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 204 DHQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYKRP 244
T KS+ CN C FT L H K+ H P
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKI-HTRKSGP 41
Score = 26.4 bits (59), Expect = 3.9
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
K + C++C + F L +H+ +HT
Sbjct: 11 KSYNCNECGKAFTRIFHLTRHQKIHT 36
Score = 25.6 bits (57), Expect = 7.5
Identities = 10/33 (30%), Positives = 11/33 (33%)
Query: 396 DHQFVHTGQKTRLCTMCPAIFASIGGLRSHMKI 428
T K+ C C F I L H KI
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKI 34
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 37.4 bits (87), Expect = 9e-04
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 497 LNKHKLLHFDKDYFSCNY--CGKTFLHKYKLRRHIVIHSTARPFSC--PVCKKQFKRKQD 552
+ ++ C++ CGKT+ L+ H H+ +PFSC C+++F R +
Sbjct: 5 SSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDE 64
Query: 553 VAGHDRV 559
++ H R
Sbjct: 65 LSRHRRT 71
Score = 37.4 bits (87), Expect = 0.001
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 130 CGQTFRQKFRLLNHMISHSTEKPFSC--PICKKQFKRKHEVSKHDRI 174
CG+T+ + L H +H+ EKPFSC C+++F R E+S+H R
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Score = 36.6 bits (85), Expect = 0.002
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 325 CGLIFSEKKYLRNHMISHSTQKPFSCSL--CGKRFKRENGVINHQRLH 370
CG + + +L+ H +H+ +KPFSCS C +RF R + + H+R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 35.8 bits (83), Expect = 0.003
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 185 KSYKCSL--CPKAFTHLAALEDHQYVHTGQKSHMCNL--CSARFT 225
+S+ CS C K + + L+ H HTG+K C+ C RF
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFA 60
Score = 31.6 bits (72), Expect = 0.10
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 570 KSYKCSL--CPKAFTYLGALEDHQFVHTGQKTHLCT 603
+S+ CS C K + L+ H HTG+K C+
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCS 51
Score = 30.0 bits (68), Expect = 0.34
Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 10/71 (14%)
Query: 143 HMISHSTEKPFSCPI--CKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSL--CPKAFTH 198
I S + C C K + + + H R H G+ K + CS C + F
Sbjct: 8 PQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRT-HTGE-----KPFSCSWKGCERRFAR 61
Query: 199 LAALEDHQYVH 209
L H+ H
Sbjct: 62 SDELSRHRRTH 72
Score = 28.9 bits (65), Expect = 0.94
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 366 HQRLHQTKKVYKSYKCSL--CPRVFTHLAALEDHQFVHTGQKTRLCTM--CPAIFASIGG 421
Q + S+ CS C + + + L+ H HTG+K C+ C FA
Sbjct: 8 PQIDSSRIR---SHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDE 64
Query: 422 LRSHMKI 428
L H +
Sbjct: 65 LSRHRRT 71
Score = 27.4 bits (61), Expect = 3.6
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 480 KPFKCD--DCDQRFLTKILLNKHKLLHFDKDYFSCNY--CGKTFLHKYKLRRHIVIH 532
+ C C + + L H H + FSC++ C + F +L RH H
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 0.001
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKKVYKSY 379
S + +KPF C CG F + H R H+
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 34.9 bits (81), Expect = 0.004
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMC 217
K ++C C F+ +L H H
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 34.5 bits (80), Expect = 0.005
Identities = 11/41 (26%), Positives = 12/41 (29%), Gaps = 1/41 (2%)
Query: 116 HKLLHT-EGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSC 155
T E C CG F L H+ SH P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 33.7 bits (78), Expect = 0.009
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKK 180
S + EKPF C C F + KH R H+
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRS-HERTD 39
Score = 33.7 bits (78), Expect = 0.010
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCS 351
F C CG+ FS L H+ SH P S
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 33.3 bits (77), Expect = 0.012
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K ++C C F++ +L H H
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSHERTD 39
Score = 32.9 bits (76), Expect = 0.020
Identities = 9/31 (29%), Positives = 11/31 (35%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSC 540
F C CG F L +H+ H P
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 29.5 bits (67), Expect = 0.31
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 205 HQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEGYK 242
TG+K C C F+ +L H++ HE
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRS-HERTD 39
Score = 29.1 bits (66), Expect = 0.46
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K ++C C F+ +L H H
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSHERTD 39
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 36.5 bits (83), Expect = 0.004
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 116 HKLLHTEGHLTCNLCGQTFRQKFR-LLNHM-ISHSTEKPFSCPICKKQFKRKHEVSKHDR 173
+ +H G C C R+ L HM + + C C+KQFK K ++ H
Sbjct: 16 QRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM 75
Query: 174 IVHQGKKYNVYKS 186
H K + S
Sbjct: 76 AEHSAKPSDAEAS 88
Score = 32.2 bits (72), Expect = 0.10
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 317 KGGFTCNSCGLIFSEK-KYLRNHM-ISHSTQKPFSCSLCGKRFKRENGVINHQRL-HQTK 373
+G C +C ++ + L+ HM + Q C C K+FK + G+ H H K
Sbjct: 22 RGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
Query: 374 KV 375
Sbjct: 82 PS 83
Score = 30.7 bits (68), Expect = 0.39
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 2/68 (2%)
Query: 506 DKDYFSCNYCGKTFLHKYK-LRRHI-VIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQG 563
++ C C L++H+ V C C+KQFK K + H H
Sbjct: 21 ERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSA 80
Query: 564 KKLIVYKS 571
K S
Sbjct: 81 KPSDAEAS 88
Score = 29.5 bits (65), Expect = 1.1
Identities = 14/76 (18%), Positives = 20/76 (26%), Gaps = 2/76 (2%)
Query: 569 YKSYKCSLCPKAF--TYLGALEDHQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHGL 626
C C T +G + + Q C C + + GL H H
Sbjct: 22 RGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
Query: 627 KTQQSCQSSHESKTCS 642
+ ES S
Sbjct: 82 PSDAEASEGGESGPSS 97
Score = 28.0 bits (61), Expect = 4.1
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 468 PHEDSKEYMALNKPFKCDDCDQRFLTKIL-LNKH-KLLHFDKDYFSCNYCGKTFLHKYKL 525
P E + + C C+ ++ L KH ++ +D C +C K F K L
Sbjct: 11 PEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGL 70
Query: 526 RRHIVIHSTARP 537
H + +A+P
Sbjct: 71 NYHTMAEHSAKP 82
Score = 27.6 bits (60), Expect = 4.9
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 6/59 (10%)
Query: 148 STEKPFSCPICKKQFKRK-HEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDH 205
CP C ++ + KH + + + + KC C K F A L H
Sbjct: 20 HERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQD-----ALKCQHCRKQFKSKAGLNYH 73
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 33.8 bits (78), Expect = 0.006
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDR 173
+ KPF CP C + F R ++ H +
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 33.5 bits (77), Expect = 0.010
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 338 HMISHSTQKPFSCSLCGKRFKRENGVINHQRLH 370
+ KPF C C + F R + + H++ H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 29.6 bits (67), Expect = 0.21
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 528 HIVIHSTARPFSCPVCKKQFKRKQDVAGHDR 558
+ +PF CP C + F R +A H +
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRK 32
Score = 25.8 bits (57), Expect = 5.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLH 120
KPF+C DCD+ F L H+ H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 25.8 bits (57), Expect = 6.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 480 KPFKCDDCDQRFLTKILLNKHKLLH 504
KPF+C DCD+ F L H+ H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 25.8 bits (57), Expect = 6.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 673 KPFKCDDCDQRFLTKILLNKHKLLH 697
KPF+C DCD+ F L H+ H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRH 34
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 37.9 bits (87), Expect = 0.012
Identities = 13/112 (11%), Positives = 22/112 (19%), Gaps = 17/112 (15%)
Query: 537 PFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDHQFVHTG 596
+ G G Y+C +C L+ H H
Sbjct: 152 TRIAEATSAIVSKHPARVGLPPTASSGHG------YQCHVCSAVLFSPLDLDAHVASHGL 205
Query: 597 QKTHLCTMCPASYATIGGLRSHIKIVHHGLKTQQSCQSSHESKTCSVDEINK 648
T S + I + Q+ S + +
Sbjct: 206 HGNMTLT----SSEIQRHITEFI-------SSWQNHPIVQVSADVENKKTAQ 246
Score = 36.8 bits (84), Expect = 0.033
Identities = 7/51 (13%), Positives = 14/51 (27%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQRLH 370
+ I S+ + S+ + C +C + H H
Sbjct: 153 RIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 36.0 bits (82), Expect = 0.053
Identities = 7/65 (10%), Positives = 12/65 (18%), Gaps = 6/65 (9%)
Query: 145 ISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALED 204
+ + G Y +C +C L+
Sbjct: 145 SNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGY------QCHVCSAVLFSPLDLDA 198
Query: 205 HQYVH 209
H H
Sbjct: 199 HVASH 203
Score = 34.4 bits (78), Expect = 0.15
Identities = 11/103 (10%), Positives = 23/103 (22%), Gaps = 5/103 (4%)
Query: 242 KRPQESCQSSHESKTCSVDEINKENEEGATIRKVKPHEDSKEYMALNKPFKCDDCFQCFL 301
K+ +++ +S + N R + +
Sbjct: 108 KQAKDTDKSKAQVTYSDTGINNA----NELSRSGNVDNEGGSNQKPMSTRIAEATSAIVS 163
Query: 302 SKILLNQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISHST 344
G + C+ C + L H+ SH
Sbjct: 164 KHPARVGLPPTASSGHG-YQCHVCSAVLFSPLDLDAHVASHGL 205
Score = 34.1 bits (77), Expect = 0.20
Identities = 11/101 (10%), Positives = 20/101 (19%)
Query: 435 TQQSCQSSHESKTCSVDEINKENEEGATIRKVKPHEDSKEYMALNKPFKCDDCDQRFLTK 494
TQ+ + + +SK N R + +
Sbjct: 106 TQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKH 165
Query: 495 ILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIHSTA 535
+ C+ C L H+ H
Sbjct: 166 PARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLH 206
Score = 33.7 bits (76), Expect = 0.25
Identities = 10/99 (10%), Positives = 24/99 (24%), Gaps = 3/99 (3%)
Query: 145 ISHSTEKPFSCPICKKQFKR--KHEVSKHDRIVHQGKKYNV-YKSYKCSLCPKAFTHLAA 201
+ +E+S+ + ++G + + A
Sbjct: 108 KQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPA 167
Query: 202 LEDHQYVHTGQKSHMCNLCSARFTCKGALLGHIKVLHEG 240
+ + C++CSA L H+
Sbjct: 168 RVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLH 206
Score = 33.3 bits (75), Expect = 0.32
Identities = 18/143 (12%), Positives = 39/143 (27%), Gaps = 8/143 (5%)
Query: 532 HSTARPFSCPVCKKQFKR--KQDVAGHDRVVHQGKKLIV-YKSYKCSLCPKAFTYLGALE 588
V +++ V ++G + + A
Sbjct: 110 AKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARV 169
Query: 589 DHQFVHTGQKTHLCTMCPASYATIGGLRSHIKIVHHGLKTQQSCQSSHESKTCSVDEINK 648
+ + C +C A + L +H+ HGL + SS +
Sbjct: 170 GLPPTASSGHGYQCHVCSAVLFSPLDLDAHVAS--HGLHGNMTLTSSEIQRHI---TEFI 224
Query: 649 ENEEGATIRKVKPHEDSKEYMAL 671
+ + I +V ++K+ L
Sbjct: 225 SSWQNHPIVQVSADVENKKTAQL 247
Score = 32.9 bits (74), Expect = 0.42
Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 5/102 (4%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQKTRLCTMCPAIFASIGGLRSHMKIVHHGLKTQ 436
+ + + A + C +C A+ S L +H+ HGL
Sbjct: 151 STRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVAS--HGLHGN 208
Query: 437 QSCQSSHESKTCSVDEINKENEEGATIRKVKPHEDSKEYMAL 478
+ SS + + + I +V ++K+ L
Sbjct: 209 MTLTSSEIQRHI---TEFISSWQNHPIVQVSADVENKKTAQL 247
Score = 32.9 bits (74), Expect = 0.52
Identities = 9/103 (8%), Positives = 23/103 (22%), Gaps = 7/103 (6%)
Query: 606 PASYATIGGLRSHIKIVHHGLKTQQSCQSSHESKTCSVDEI-------NKENEEGATIRK 658
+S ++ + + + S + A + K
Sbjct: 105 ATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSK 164
Query: 659 VKPHEDSKEYMALNKPFKCDDCDQRFLTKILLNKHKLLHFDKD 701
+ ++C C + + L+ H H
Sbjct: 165 HPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHG 207
Score = 31.7 bits (71), Expect = 0.92
Identities = 14/95 (14%), Positives = 23/95 (24%), Gaps = 3/95 (3%)
Query: 58 KLSHETEARTHKLNEKEESTTKKKVNTHGASKENVALNKPFKCDDCDQCFLTKILLNKHK 117
K + +N E + V+ G S +
Sbjct: 115 KSKAQVTYSDTGINNANELSRSGNVDNEGGSN--QKPMSTRIAEATSAIVSKHPARVGLP 172
Query: 118 LLHTEGH-LTCNLCGQTFRQKFRLLNHMISHSTEK 151
+ GH C++C L H+ SH
Sbjct: 173 PTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHG 207
Score = 31.7 bits (71), Expect = 1.1
Identities = 7/48 (14%), Positives = 14/48 (29%)
Query: 461 ATIRKVKPHEDSKEYMALNKPFKCDDCDQRFLTKILLNKHKLLHFDKD 508
A + K + ++C C + + L+ H H
Sbjct: 160 AIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHG 207
Score = 31.0 bits (69), Expect = 1.9
Identities = 6/55 (10%), Positives = 9/55 (16%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGK 564
S+ + C VC D+ H
Sbjct: 153 RIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHG 207
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 34.5 bits (78), Expect = 0.017
Identities = 12/65 (18%), Positives = 25/65 (38%)
Query: 116 HKLLHTEGHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKHEVSKHDRIV 175
+ + +G ++C C R+ L + + ++ F+C C KQ + + H
Sbjct: 26 YLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMAN 85
Query: 176 HQGKK 180
H
Sbjct: 86 HNSLP 90
Score = 30.6 bits (68), Expect = 0.41
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 317 KGGFTCNSCGLI-FSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINHQR 368
KG +C +C + + L+ HM + Q+ F+C CGK+ + G+ H
Sbjct: 32 KGSVSCPTCQAVGRKTIEGLKKHMENCK-QEMFTCHHCGKQLRSLAGMKYHVM 83
Score = 28.7 bits (63), Expect = 1.9
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 506 DKDYFSCNYCGK-TFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGK 564
DK SC C L++H+ F+C C KQ + + H H
Sbjct: 31 DKGSVSCPTCQAVGRKTIEGLKKHMENCK-QEMFTCHHCGKQLRSLAGMKYHVMANHNSL 89
Query: 565 K 565
Sbjct: 90 P 90
Score = 28.3 bits (62), Expect = 3.1
Identities = 12/71 (16%), Positives = 26/71 (36%)
Query: 468 PHEDSKEYMALNKPFKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRR 527
E + C C I K + + ++ F+C++CGK ++
Sbjct: 21 LEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKY 80
Query: 528 HIVIHSTARPF 538
H++ + + P
Sbjct: 81 HVMANHNSLPS 91
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 31.7 bits (72), Expect = 0.036
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 151 KPFSCPICKKQFKRKHEVSKHDRIVHQG 178
K ++C +C + F R+ + +H + +H G
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSG 28
Score = 29.4 bits (66), Expect = 0.22
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 346 KPFSCSLCGKRFKRENGVINH-QRLHQ 371
K ++C LC + F R + +I H Q++H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHS 27
Score = 29.1 bits (65), Expect = 0.29
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 289 KPFKCDDCFQCFLSKILLNQHKKQMH 314
K + C C + F + LL +H +++H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIH 26
Score = 29.1 bits (65), Expect = 0.38
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 536 RPFSCPVCKKQFKRKQDVAGHDRVVHQG 563
+ ++C +C + F R+ + H + +H G
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSG 28
Score = 26.4 bits (58), Expect = 3.3
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 96 KPFKCDDCDQCFLTKILLNKH 116
K + C C++ F + LL +H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRH 21
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 33.6 bits (76), Expect = 0.040
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 307 NQHKKQMHFNKGGFTCNSCGLIFSEKKYLRNHMISH----STQKPFSCSLCGKRFKRENG 362
+ H +Q +GG+ C C + H+ S + C C KR +
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDA 65
Query: 363 VINHQRLH 370
+ H +
Sbjct: 66 LSEHNLKY 73
Score = 33.2 bits (75), Expect = 0.055
Identities = 17/72 (23%), Positives = 21/72 (29%), Gaps = 4/72 (5%)
Query: 365 NHQRLHQTKKVYKSYKCSLCPRVFTHLAALEDH-QFVHTGQKTR---LCTMCPAIFASIG 420
+H Q KKV Y+C C L H H +C C +
Sbjct: 5 HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64
Query: 421 GLRSHMKIVHHG 432
L H H G
Sbjct: 65 ALSEHNLKYHPG 76
Score = 32.4 bits (73), Expect = 0.10
Identities = 17/74 (22%), Positives = 22/74 (29%), Gaps = 4/74 (5%)
Query: 171 HDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDH-QYVHTG---QKSHMCNLCSARFTC 226
H H + V Y+C C L H H S++C C+
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR 62
Query: 227 KGALLGHIKVLHEG 240
AL H H G
Sbjct: 63 YDALSEHNLKYHPG 76
Score = 32.4 bits (73), Expect = 0.12
Identities = 15/74 (20%), Positives = 20/74 (27%), Gaps = 4/74 (5%)
Query: 556 HDRVVHQGKKLIVYKSYKCSLCPKAFTYLGALEDH-QFVHTG---QKTHLCTMCPASYAT 611
H H + V Y+C C L H H +++C C
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR 62
Query: 612 IGGLRSHIKIVHHG 625
L H H G
Sbjct: 63 YDALSEHNLKYHPG 76
Score = 30.1 bits (67), Expect = 0.64
Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 4/71 (5%)
Query: 122 EGHLTCNLCGQTFRQKFRLLNHMISH----STEKPFSCPICKKQFKRKHEVSKHDRIVHQ 177
EG C C H+ S + C C KR +S+H+ H
Sbjct: 16 EGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHP 75
Query: 178 GKKYNVYKSYK 188
G++ K
Sbjct: 76 GEENFKLTMVK 86
Score = 29.4 bits (65), Expect = 1.1
Identities = 12/79 (15%), Positives = 23/79 (29%), Gaps = 4/79 (5%)
Query: 499 KHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIH----STARPFSCPVCKKQFKRKQDVA 554
++ + + C YC H+ + C C KR ++
Sbjct: 8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALS 67
Query: 555 GHDRVVHQGKKLIVYKSYK 573
H+ H G++ K
Sbjct: 68 EHNLKYHPGEENFKLTMVK 86
Score = 28.6 bits (63), Expect = 2.5
Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 3/78 (3%)
Query: 143 HMISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAAL 202
+ + E + C C Q + + H H N SY C C AL
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLN--SSYVCVECNFLTKRYDAL 66
Query: 203 EDHQY-VHTGQKSHMCNL 219
+H H G+++ +
Sbjct: 67 SEHNLKYHPGEENFKLTM 84
Score = 27.8 bits (61), Expect = 4.1
Identities = 17/81 (20%), Positives = 22/81 (27%), Gaps = 3/81 (3%)
Query: 525 LRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDRVVHQGKKLIVYKSYKCSLCPKAFTYL 584
+ + C C Q H H L SY C C
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVL--NSSYVCVECNFLTKRY 63
Query: 585 GALEDHQF-VHTGQKTHLCTM 604
AL +H H G++ TM
Sbjct: 64 DALSEHNLKYHPGEENFKLTM 84
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 31.3 bits (70), Expect = 0.060
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
K Y C C + F GAL+ H +HTG+K
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 30.5 bits (68), Expect = 0.095
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K Y C C + F AL+ H +HTG+K
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 29.0 bits (64), Expect = 0.37
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
K Y C C R F AL+ H +HTG+K
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 25.5 bits (55), Expect = 7.1
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 151 KPFSCPICKKQFKRKHEVSKHDRIVHQGKK 180
KP+ C C++QF + +H RI H G+K
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRI-HTGEK 30
Score = 25.1 bits (54), Expect = 7.9
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 346 KPFSCSLCGKRFKRENGVINHQRLHQTKK 374
KP+ C C ++F + H R+H +K
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 30.7 bits (70), Expect = 0.072
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 346 KPFSCSLCGKRFKRENGVINHQRLHQTKK 374
+ F C +C + F R+ + H R H +K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 30.0 bits (68), Expect = 0.14
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 151 KPFSCPICKKQFKRKHEVSKHDRIVHQGKK 180
+ F C +C + F R+ + +H R H +K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS-HTNEK 29
Score = 28.1 bits (63), Expect = 0.65
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 536 RPFSCPVCKKQFKRKQDVAGHDRVVHQGKK 565
R F C VC + F R++ + H R H +K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYR-SHTNEK 29
Score = 26.9 bits (60), Expect = 1.8
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
+S+ C +C +AF L+ H HT +K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 26.5 bits (59), Expect = 2.7
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQK 405
+S+ C +C R F L+ H HT +K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 26.5 bits (59), Expect = 2.8
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQK 598
+S+ C +C +AF L+ H HT +K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 25.4 bits (56), Expect = 6.7
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHS 533
F C C + F + L+RH H+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHT 26
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 30.9 bits (69), Expect = 0.094
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQKS 214
KS++C C + F +L +HQ +H GQK+
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQKN 40
Score = 30.6 bits (68), Expect = 0.16
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQKT 406
KS++C C +F +L +HQ +H GQK
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQKN 40
Score = 29.4 bits (65), Expect = 0.32
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTGQKT 599
KS++C C + F +L +HQ +H GQK
Sbjct: 11 KSHQCRECGEIFFQYVSLIEHQVLHMGQKN 40
Score = 29.0 bits (64), Expect = 0.48
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 341 SHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
S S +K C CG+ F + +I HQ LH +K
Sbjct: 6 SGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 27.5 bits (60), Expect = 2.1
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 86 GASKENVALNKPFKCDDCDQCFLTKILLNKHKLLHT 121
G+S + + K +C +C + F + L +H++LH
Sbjct: 1 GSSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHM 36
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 29.9 bits (68), Expect = 0.15
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 151 KPFSC--PICKKQFKRKHEVSKHDRIVHQGKK 180
+PF C C K+F R E+ +H R H G+K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRT-HTGEK 31
Score = 27.6 bits (62), Expect = 0.97
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 346 KPFSCS--LCGKRFKRENGVINHQRLH 370
+PF C+ CGKRF R + + H+R H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.2 bits (75), Expect = 0.16
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 14/58 (24%)
Query: 34 AQLLETTNEKLNERKILVWKKISGKLSHETEARTHKLNEKEESTTKKKVNT-HGASKE 90
AQ T E + RK W++ E R L E + ++ + A K+
Sbjct: 75 AQADRLTQEPESIRK---WRE-------EQRKR---LQELDAASKVMEQEWREKAKKD 119
Score = 29.4 bits (65), Expect = 2.7
Identities = 6/34 (17%), Positives = 13/34 (38%), Gaps = 8/34 (23%)
Query: 235 KVLHEGYKRPQESCQSSHESKTCSVDEINKENEE 268
K L E +R E + + + N+ ++
Sbjct: 118 KDLEEWNQRQSEQVEKNKIN--------NRIADK 143
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 30.2 bits (67), Expect = 0.17
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 340 ISHSTQKPFSCSLCGKRFKRENGVINHQRLHQTKK 374
S S+ K F+C C K FK ++ + H R+H +K
Sbjct: 2 SSGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 26.4 bits (57), Expect = 3.4
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 145 ISHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKK 180
S S+ K F+C C K FK KH + H RI H +K
Sbjct: 2 SSGSSGKIFTCEYCNKVFKFKHSLQAHLRI-HTNEK 36
Score = 25.2 bits (54), Expect = 9.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 510 FSCNYCGKTFLHKYKLRRHIVIHSTAR 536
F+C YC K F K+ L+ H+ IH+ +
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein,
C2H2 type zinc-finger, structural genomics; NMR {Mus
musculus} SCOP: g.37.1.2 g.37.1.2
Length = 79
Score = 31.4 bits (71), Expect = 0.17
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 509 YFSCNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGH 556
+F+CN CG++ + K ++ +H+ SC C K F D H
Sbjct: 10 FFTCNACGES-VKKIQVEKHVSNCRNCECLSCIDCGKDFWG-DDYKSH 55
Score = 28.3 bits (63), Expect = 1.9
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 320 FTCNSCGLIFSEKKYLRNHMISHSTQKPFSCSLCGKRFKRENGVINH 366
FTCN+CG + + + H+ + + SC CGK F ++ +H
Sbjct: 11 FTCNACGESVKKIQ-VEKHVSNCRNCECLSCIDCGKDFWGDD-YKSH 55
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 33.1 bits (75), Expect = 0.19
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 273 RKVKPHEDSKEYMALNKPFKCDDCFQCFLSKILLNQHKKQMHFNKGGFTCNSCGLIFSEK 332
R+ + LN C +C + + KI+ F++G C CGL+ S+K
Sbjct: 4 RESIDKRAGRRGPNLNIVLTCPEC-KVYPPKIVER-------FSEGDVVCALCGLVLSDK 55
Score = 29.2 bits (65), Expect = 3.0
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 15/72 (20%)
Query: 84 THGASKENVALNKPFKCDDCDQCFLTKILLNKHKLLHTEGHLTCNLCGQTFRQKFRLLNH 143
G N LN C +C + KI+ +EG + C LCG L +
Sbjct: 10 RAGRRGPN--LNIVLTCPECKV-YPPKIVER-----FSEGDVVCALCG------LVLSDK 55
Query: 144 MISHSTE-KPFS 154
++ +E + FS
Sbjct: 56 LVDTRSEWRTFS 67
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 29.9 bits (66), Expect = 0.24
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 341 SHSTQKPFSCSLCGKRFKRENGVINHQRLH 370
S + + C CGK F+ + +I HQ LH
Sbjct: 6 SGAAKTTSECQECGKIFRHSSLLIEHQALH 35
Score = 29.1 bits (64), Expect = 0.44
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 86 GASKENVALNKPFKCDDCDQCFLTKILLNKHKLLHT 121
G+S + A +C +C + F LL +H+ LH
Sbjct: 1 GSSGSSGAAKTTSECQECGKIFRHSSLLIEHQALHA 36
Score = 28.7 bits (63), Expect = 0.55
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 186 SYKCSLCPKAFTHLAALEDHQYVHTGQ 212
+ +C C K F H + L +HQ +H G+
Sbjct: 12 TSECQECGKIFRHSSLLIEHQALHAGE 38
Score = 27.2 bits (59), Expect = 2.1
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 378 SYKCSLCPRVFTHLAALEDHQFVHTGQ 404
+ +C C ++F H + L +HQ +H G+
Sbjct: 12 TSECQECGKIFRHSSLLIEHQALHAGE 38
Score = 26.0 bits (56), Expect = 5.0
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 571 SYKCSLCPKAFTYLGALEDHQFVHTGQ 597
+ +C C K F + L +HQ +H G+
Sbjct: 12 TSECQECGKIFRHSSLLIEHQALHAGE 38
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 29.8 bits (66), Expect = 0.26
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 345 QKPFSCSLCGKRFKRENGVINH 366
KP++C +CGKR+K G+ H
Sbjct: 5 DKPYACDICGKRYKNRPGLSYH 26
Score = 26.3 bits (57), Expect = 5.2
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 150 EKPFSCPICKKQFKRKHEVSKHDRIVHQGKK 180
+KP++C IC K++K + +S H H ++
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHYAHSHLAEE 35
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 29.4 bits (65), Expect = 0.35
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 86 GASKENVALNKPFKCDDCDQCFLTKILLNKHKLLHTEG 123
G+S + K FKC+ C++ F L +H+ +HT G
Sbjct: 1 GSSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRG 38
Score = 28.3 bits (62), Expect = 0.93
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 146 SHSTEKPFSCPICKKQFKRKHEVSKHDRIVHQGKK 180
S EK F C C+K F +++H+RI +G K
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVK 40
Score = 27.5 bits (60), Expect = 1.6
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 341 SHSTQKPFSCSLCGKRFKRENGVINHQRLH 370
S +K F C+ C K F + H+R+H
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 28.6 bits (64), Expect = 0.50
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 377 KSYKCSLCPRVFTHLAALEDHQFVHTGQKTRL 408
+SY CS C R F AL H VH + RL
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRDRARL 36
Score = 28.2 bits (63), Expect = 0.87
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVH 209
+SY CS C + F AL H VH
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
Score = 27.0 bits (60), Expect = 1.9
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVH 594
+SY CS C + F AL H VH
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
Score = 26.3 bits (58), Expect = 3.9
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 536 RPFSCPVCKKQFKRKQDVAGH 556
R ++C CK++F+ Q + GH
Sbjct: 5 RSYTCSFCKREFRSAQALGGH 25
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 28.6 bits (63), Expect = 0.54
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 151 KPFSCPICKKQFKRKHEVSKHDRI 174
+P+SC +C K+F KH++ H R+
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRV 25
Score = 28.2 bits (62), Expect = 0.70
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 346 KPFSCSLCGKRFKRENGVINHQRLH 370
+P+SCS+CGKRF ++ + H R+H
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVH 26
Score = 26.3 bits (57), Expect = 3.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 536 RPFSCPVCKKQFKRKQDVAGHDRV 559
RP+SC VC K+F K + H RV
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRV 25
Score = 24.8 bits (53), Expect = 9.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 570 KSYKCSLCPKAFTYLGALEDHQFVHTG 596
+ Y CS+C K F+ +E H VHTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 27.9 bits (62), Expect = 0.73
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 348 FSCSLCGKRFKRENGVINHQRLHQTKK 374
F+C C KRF R + + H LH+ KK
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
Score = 26.8 bits (59), Expect = 2.0
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 153 FSCPICKKQFKRKHEVSKHDRIVHQGKK 180
F+CP C K+F R ++ H + H+ KK
Sbjct: 3 FACPECPKRFMRSDHLTLHILL-HENKK 29
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 31.3 bits (70), Expect = 0.82
Identities = 7/49 (14%), Positives = 15/49 (30%)
Query: 484 CDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCGKTFLHKYKLRRHIVIH 532
+D +R + H+ L + + + LR I +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLS 231
Score = 28.2 bits (62), Expect = 7.3
Identities = 8/58 (13%), Positives = 17/58 (29%), Gaps = 2/58 (3%)
Query: 509 YFSCNYCGKTFLHKYKLRRHIVIHSTARPFSCPVCKKQFKRKQDVAGHDR--VVHQGK 564
+ K + H + + ++ +D+ G V+ QGK
Sbjct: 180 VWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQGK 237
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 27.9 bits (62), Expect = 1.1
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 510 FSCNY--CGKTFLHKYKLRRHIVIHSTAR 536
F C + C KTF +Y +R HI H R
Sbjct: 19 FECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion,
acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 29.7 bits (67), Expect = 1.2
Identities = 14/74 (18%), Positives = 22/74 (29%), Gaps = 7/74 (9%)
Query: 482 FKCDDCDQRFLTKILLNKHKLLHFDKDYFS-----CNYCGKTFLHKYKLRRH--IVIHST 534
F C DCD +I + + Y C C + + + H++
Sbjct: 31 FCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAIDPEVQRVTYNNFSWHAS 90
Query: 535 ARPFSCPVCKKQFK 548
F C C K
Sbjct: 91 TECFLCSCCSKCLI 104
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 27.4 bits (60), Expect = 1.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 187 YKCSLCPKAFTHLAALEDHQYVH 209
YKC LC ++F +AL HQ VH
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
Score = 27.0 bits (59), Expect = 1.5
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 379 YKCSLCPRVFTHLAALEDHQFVH 401
YKC LC R F +AL HQ VH
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
Score = 25.9 bits (56), Expect = 4.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 572 YKCSLCPKAFTYLGALEDHQFVH 594
YKC LC ++F AL HQ VH
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 31.3 bits (70), Expect = 1.5
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 408 LCTMCPAIFASIGGLRSHMKIVH 430
+C +C A F+++ L H++ H
Sbjct: 118 VCNVCNARFSTMSALSEHLRSDH 140
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 27.2 bits (60), Expect = 1.9
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 348 FSCSLCGKRFKRENGVINHQRLHQTKK 374
F+C C KRF R + + H LH+
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLG 29
Score = 26.4 bits (58), Expect = 3.3
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 153 FSCPICKKQFKRKHEVSKHDRIVHQGKK 180
F+CP C K+F R +SKH + H+
Sbjct: 3 FACPECPKRFMRSDHLSKHITL-HELLG 29
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 27.0 bits (59), Expect = 1.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 346 KPFSCSLCGKRFKRENGVINHQRLH 370
KP+ C CGKRF + + + NH R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 26.7 bits (58), Expect = 2.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 345 QKPFSCSLCGKRFKRENGVINHQRLH 370
+KPFSCSLC +R + + + H R H
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRTH 26
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 26.8 bits (58), Expect = 2.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 533 STARPFSCPVCKKQFKRKQDVAGHDRVVH 561
S+ R +SCPVC+K F + + H + H
Sbjct: 5 SSGRSYSCPVCEKSFSEDRLIKSHIKTNH 33
Score = 26.0 bits (56), Expect = 5.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 146 SHSTEKPFSCPICKKQFKRKHEVSKHDRIVH 176
S S+ + +SCP+C+K F + H + H
Sbjct: 3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKTNH 33
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 26.5 bits (58), Expect = 2.4
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 150 EKPFSC--PICKKQFKRKHEVSKHDRI 174
++P+SC P C K F R H++ +H +
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKS 27
Score = 25.7 bits (56), Expect = 5.0
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 346 KPFSCSL--CGKRFKRENGVINHQRLHQTK 373
+P+SC C K F R + +I H++ HQ K
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 26.6 bits (58), Expect = 2.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 153 FSCPICKKQFKRKHEVSKH 171
F+CP C K+F R +SKH
Sbjct: 3 FACPACPKRFMRSDALSKH 21
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.7 bits (58), Expect = 2.7
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 96 KPFKCDDCDQCFLTKILLNKHKLLHT 121
KP+KC C K LN H HT
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHT 33
Score = 25.2 bits (54), Expect = 9.5
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K YKC C A A L H HTG+K
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger;
NMR {Homo sapiens} SCOP: g.41.3.1
Length = 62
Score = 26.8 bits (59), Expect = 4.1
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 471 DSKEYMALNKP-FKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCG 516
++ E + N+ FKC C F L ++L F C +C
Sbjct: 3 ETDERDSTNRASFKCPVCSSTFTD---LEANQLFDPMTGTFRCTFCH 46
Score = 26.8 bits (59), Expect = 4.1
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 664 DSKEYMALNKP-FKCDDCDQRFLTKILLNKHKLLHFDKDYFSCNYCG 709
++ E + N+ FKC C F L ++L F C +C
Sbjct: 3 ETDERDSTNRASFKCPVCSSTFTD---LEANQLFDPMTGTFRCTFCH 46
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 25.9 bits (56), Expect = 4.3
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 595 TGQKTHLCTMCPASYATIGGLRSHIKIVHHGLK 627
+G ++C +C + + LRSHI+ VH +
Sbjct: 3 SGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ 35
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin
remodeling, DNA binding protein/DNA complex; HET: DNA;
NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB:
1yuj_A*
Length = 54
Score = 26.4 bits (57), Expect = 5.0
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 149 TEKPFSCPICKKQFKRKHEVSKHDRIVHQGK 179
+E+P +CPIC ++ + +H + H K
Sbjct: 21 SEQPATCPICYAVIRQSRNLRRHLELRHFAK 51
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 25.9 bits (56), Expect = 5.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 346 KPFSCSLCGKRFKRENGVINHQRLHQTKK 374
KP C +CGK F + + +I H R H +K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 25.1 bits (54), Expect = 9.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 185 KSYKCSLCPKAFTHLAALEDHQYVHTGQK 213
K +C +C KAFT ++L H HTG+K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain,
signal transduction inhibitor nuclear protein; 1.9A
{Homo sapiens} SCOP: a.271.1.1 d.93.1.1
Length = 169
Score = 28.3 bits (63), Expect = 6.6
Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 1/68 (1%)
Query: 164 RKHEVSKHDRIVHQGKKYNVYKSYKCSLCPKAFTHLAALEDHQYVHTGQKSHMCNLCSAR 223
+ + RI +Q K+ + K F + L D+ YV +
Sbjct: 58 KTSAGPTNLRIEYQDGKFRLDSIICVKSKLKQFDSVVHLIDY-YVQMCKDKRTGPEAPRN 116
Query: 224 FTCKGALL 231
T L
Sbjct: 117 GTVHLYLT 124
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 25.5 bits (55), Expect = 7.0
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 147 HSTEKPFSCPICKKQFKRKHEVSKHDRI 174
S ++PF C IC F K ++H ++
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKV 29
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 26.5 bits (59), Expect = 8.6
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 146 SHSTEKPFSCPICKKQFKRKH 166
S + SCP+C+ ++ ++
Sbjct: 53 SMLDKGESSCPVCRISYQPEN 73
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.2 bits (54), Expect = 9.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 341 SHSTQKPFSCSLCGKRFKRENGVINHQRLH 370
S S+ K C +CGK+FK + + +H+ LH
Sbjct: 3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLH 32
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 26.6 bits (59), Expect = 9.0
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 8/44 (18%)
Query: 123 GHLTCNLCGQTFRQKFRLLNHMISHSTEKPFSCPICKKQFKRKH 166
H C C + R +T+ +CP+C+ + +
Sbjct: 38 NHSFCRACITLNYESNR--------NTDGKGNCPVCRVPYPFGN 73
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 25.0 bits (55), Expect = 9.2
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 185 KSYKCSL--CPKAFTHLAALEDHQYVHTGQK 213
K + C + C K + + L H HTG++
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.134 0.420
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,253,621
Number of extensions: 587589
Number of successful extensions: 5578
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4571
Number of HSP's successfully gapped: 2136
Length of query: 712
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 612
Effective length of database: 3,909,693
Effective search space: 2392732116
Effective search space used: 2392732116
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.7 bits)