BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16834
(488 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 84/169 (49%), Gaps = 3/169 (1%)
Query: 11 FSCSLCSYSVTIKRNLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIEIHGADPFLC 70
++C C S + +L H +R HT E CPECG+ F ++K+L H+ G P+ C
Sbjct: 22 YACPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKC 80
Query: 71 IPCNKPFSKIENYRLHQRRYHLNSVNKECKICHKVL-RTARLSEHMKQVHYAKLFDCHIC 129
C K FS+ N R HQ R H C C K + A L H + K + C C
Sbjct: 81 PECGKSFSQRANLRAHQ-RTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPEC 139
Query: 130 GKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVR 178
GK+ E N H + H+ +KP++C C K+F + L +H RTHTG +
Sbjct: 140 GKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 76/159 (47%), Gaps = 3/159 (1%)
Query: 251 CPYCAKFLSRKEKLNRHIRTVHTDVNYKCEICGEEFLSKTRYNRHVVTHEEKQKFEC-EC 309
CP C K SR + L H RT + YKC CG+ F K RH TH ++ ++C EC
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPEC 83
Query: 310 GYVTCNKYRLTEHVRRTHLKDYKVLCPICGYGCFRNAELEEHFISAHSADRFKCVFCEKS 369
G + L H +RTH + CP CG + A L H + +KC C KS
Sbjct: 84 GKSFSQRANLRAH-QRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKS 142
Query: 370 FARNCNLKLHIRRYHDKSDNTECPLCGKSFPSRGRLNEH 408
F+R NL H +R H +CP CGKSF R LN H
Sbjct: 143 FSREDNLHTH-QRTHTGEKPYKCPECGKSFSRRDALNVH 180
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 79/186 (42%), Gaps = 2/186 (1%)
Query: 285 EFLSKTRYNRHVVTHEEKQKFECECGYVTCNKYRLTEHVRRTHLKDYKVLCPICGYGCFR 344
EF S + + + EK ECG L EH +RTH + CP CG
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSFSD 61
Query: 345 NAELEEHFISAHSADRFKCVFCEKSFARNCNLKLHIRRYHDKSDNTECPLCGKSFPSRGR 404
+L H + +KC C KSF++ NL+ H +R H CP CGKSF
Sbjct: 62 KKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAH-QRTHTGEKPYACPECGKSFSQLAH 120
Query: 405 LNEHLIQVHPAQKHQCHICNKIVVSEXXXXXXXXXXXNSEPFHCPECGKAFKFKRYVTLH 464
L H + ++C C K E +P+ CPECGK+F + + +H
Sbjct: 121 LRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180
Query: 465 MRTHTG 470
RTHTG
Sbjct: 181 QRTHTG 186
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 81/184 (44%), Gaps = 17/184 (9%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMF 181
K + C CGK+ + +H + H+ +KP++C C K+F K LT H RTHTG +P +
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP-Y 78
Query: 182 ECDICHKVLXXXXXXXXXXXXNENLRP--CTLCDKKLASERKLKEHIRKQHPTSVEADLI 239
+C C K + +P C C K + L+ H
Sbjct: 79 KCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH-------------- 124
Query: 240 RREKYEREKVQCPYCAKFLSRKEKLNRHIRTVHTDVNYKCEICGEEFLSKTRYNRHVVTH 299
+R + +CP C K SR++ L+ H RT + YKC CG+ F + N H TH
Sbjct: 125 QRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTH 184
Query: 300 EEKQ 303
K+
Sbjct: 185 TGKK 188
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 65/152 (42%), Gaps = 2/152 (1%)
Query: 334 LCPICGYGCFRNAELEEHFISAHSADRFKCVFCEKSFARNCNLKLHIRRYHDKSDNTECP 393
CP CG R+ L EH + +KC C KSF+ +L H +R H +CP
Sbjct: 23 ACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH-QRTHTGEKPYKCP 81
Query: 394 LCGKSFPSRGRLNEHLIQVHPAQKHQCHICNKIVVSEXXXXXXXXXXXNSEPFHCPECGK 453
CGKSF R L H + + C C K +P+ CPECGK
Sbjct: 82 ECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGK 141
Query: 454 AFKFKRYVTLHMRTHTGNWPTFVCKICNATIS 485
+F + + H RTHTG P + C C + S
Sbjct: 142 SFSREDNLHTHQRTHTGEKP-YKCPECGKSFS 172
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 86/223 (38%), Gaps = 44/223 (19%)
Query: 49 FFNEKELAAHKIEIHGADPFLCIPCNKPFSKIENYRLHQRRYHLNSVNKECKICHKVLRT 108
F + +A +E G P+ C C K FS+ ++ HQ R H +C C K
Sbjct: 4 FGSSSSVAQAALEP-GEKPYACPECGKSFSRSDHLAEHQ-RTHTGEKPYKCPECGKSFSD 61
Query: 109 AR-LSEHMKQVHYAKLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYL 167
+ L+ H + K + C CGK+ N + H + H+ +KP+ C C K+F +L
Sbjct: 62 KKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHL 121
Query: 168 TLHLRTHTGVRPMFECDICHKVLXXXXXXXXXXXXNENLRPCTLCDKKLASERKLKEHIR 227
H RTHTG +P C C K + E L H
Sbjct: 122 RAHQRTHTGEKPYK---------------------------CPECGKSFSREDNLHTH-- 152
Query: 228 KQHPTSVEADLIRREKYEREKVQCPYCAKFLSRKEKLNRHIRT 270
+R + +CP C K SR++ LN H RT
Sbjct: 153 ------------QRTHTGEKPYKCPECGKSFSRRDALNVHQRT 183
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 62/138 (44%), Gaps = 2/138 (1%)
Query: 250 QCPYCAKFLSRKEKLNRHIRTVHTDVNYKCEICGEEFLSKTRYNRHVVTHEEKQKFEC-E 308
+CP C K S K+ L RH RT + YKC CG+ F + H TH ++ + C E
Sbjct: 51 KCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPE 110
Query: 309 CGYVTCNKYRLTEHVRRTHLKDYKVLCPICGYGCFRNAELEEHFISAHSADRFKCVFCEK 368
CG L H +RTH + CP CG R L H + +KC C K
Sbjct: 111 CGKSFSQLAHLRAH-QRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGK 169
Query: 369 SFARNCNLKLHIRRYHDK 386
SF+R L +H R + K
Sbjct: 170 SFSRRDALNVHQRTHTGK 187
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
Query: 361 FKCVFCEKSFARNCNLKLHIRRYHDKSDNTECPLCGKSFPSRGRLNEHLIQVHPAQKHQC 420
+ C C KSF+R+ +L H +R H +CP CGKSF + L H + ++C
Sbjct: 22 YACPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKC 80
Query: 421 HICNKIVVSEXXXXXXXXXXXNSEPFHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCKIC 480
C K +P+ CPECGK+F ++ H RTHTG P + C C
Sbjct: 81 PECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKP-YKCPEC 139
Query: 481 NATISSE 487
+ S E
Sbjct: 140 GKSFSRE 146
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 76/187 (40%), Gaps = 19/187 (10%)
Query: 145 LHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHKVLXXXXXXXXXXXXNE 204
L +KP+ C C K+F +L H RTHTG +P ++C C K +
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKP-YKCPECGKSFSDKKDLTRHQRTHT 73
Query: 205 NLRP--CTLCDKKLASERKLKEHIRKQHPTSVEADLIRREKYEREKVQCPYCAKFLSRKE 262
+P C C K + L+ H +R + CP C K S+
Sbjct: 74 GEKPYKCPECGKSFSQRANLRAH--------------QRTHTGEKPYACPECGKSFSQLA 119
Query: 263 KLNRHIRTVHTDVNYKCEICGEEFLSKTRYNRHVVTHEEKQKFEC-ECGYVTCNKYRLTE 321
L H RT + YKC CG+ F + + H TH ++ ++C ECG + L
Sbjct: 120 HLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNV 179
Query: 322 HVRRTHL 328
H +RTH
Sbjct: 180 H-QRTHT 185
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMF 181
KL+ C CGK+ + +HM +H +P+ C C K FK+K++L H++ HTG++P +
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP-Y 66
Query: 182 ECDICHK 188
EC+IC K
Sbjct: 67 ECNICAK 73
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 103 HKVLRTARLSEHMKQVHYAKLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFK 162
HK R +S H+ + + C +CGK + + HM++H+ KP+EC C K F
Sbjct: 21 HKSQRDRHMSMHLG----LRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFM 76
Query: 163 LKYYLTLHLRT 173
+ H+ +
Sbjct: 77 WRDSFHRHVTS 87
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 445 PFHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCKIC 480
P+ C CGK FK K ++ HM+ HTG P + C IC
Sbjct: 37 PYGCGVCGKKFKMKHHLVGHMKIHTGIKP-YECNIC 71
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 251 CPYCAKFLSRKEKLNRHIRTVHTDVN-YKCEICGEEFLSKTRYNRHVVT 298
C C K K L H++ +HT + Y+C IC + F+ + ++RHV +
Sbjct: 40 CGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICAKRFMWRDSFHRHVTS 87
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 254 CAKFLSRKEKLNRHIRTVHTDVN-YKCEICGEEFLSKTRYNRHVVTHEEKQKFEC 307
C K + K + +RH+ ++H + Y C +CG++F K H+ H + +EC
Sbjct: 15 CGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYEC 68
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 98 ECKICHKVL-RTARLSEHMKQVHYAKLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQF 156
+C++C K R +L HM+ K + C C + KH+++HSD++PF+CQ
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 157 CRKAFKLKYYLTLHLRTHTG 176
C A + LT+HLR+HTG
Sbjct: 70 CPYASRNSSQLTVHLRSHTG 89
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 250 QCPYCAKFLSRKEKLNRHIRTVHTDVN-YKCEICGEEFLSKTRYNRHVVTHEEKQKFECE 308
+C C K SRK+KL H+R HT V YKC+ C + N+H+ H +++ F+C+
Sbjct: 10 KCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 309 -CGYVTCNKYRLTEHVRRTHLKD 330
C Y + N +LT H+ R+H D
Sbjct: 69 ICPYASRNSSQLTVHL-RSHTGD 90
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 126 CHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDI 185
C +CGK + K HM+ H+ KP++C+ C A L HLR H+ RP F+C I
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERP-FKCQI 69
Query: 186 C 186
C
Sbjct: 70 C 70
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 277 YKCEICGEEFLSKTRYNRHVVTHEEKQKFECE-CGYVTCNKYRLTEHVRRTHLKDYKVLC 335
+KCE+CG+ F K + H+ H + ++C+ C Y + L +H+ R H + C
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL-RIHSDERPFKC 67
Query: 336 PICGYGCFRNAELEEHFISAHSAD 359
IC Y +++L H S H+ D
Sbjct: 68 QICPYASRNSSQLTVHLRS-HTGD 90
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 151 PFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHKVLXXXXXXXXXXXXNENLRP-- 208
P +C+ C K F K L H+R HTGV+P ++C C + + RP
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKHLRIHSDERPFK 66
Query: 209 CTLCDKKLASERKLKEHIR 227
C +C + +L H+R
Sbjct: 67 CQICPYASRNSSQLTVHLR 85
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%)
Query: 391 ECPLCGKSFPSRGRLNEHLIQVHPAQKHQCHICNKIVVSEXXXXXXXXXXXNSEPFHCPE 450
+C +CGK F + +L H+ + ++C C+ + PF C
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI 69
Query: 451 CGKAFKFKRYVTLHMRTHTGN 471
C A + +T+H+R+HTG+
Sbjct: 70 CPYASRNSSQLTVHLRSHTGD 90
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 442 NSEPFHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCKICN 481
+S P C CGK F K + HMR HTG P + CK C+
Sbjct: 5 SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCD 43
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 17/101 (16%)
Query: 306 ECE-CGYVTCNKYRLTEHVR-RTHLKDYKVLCPICGYGCFRNAELEEHFISAHSADR-FK 362
+CE CG K +L H+R T +K YK C C Y ++ L +H + HS +R FK
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYK--CKTCDYAAADSSSLNKH-LRIHSDERPFK 66
Query: 363 CVFCEKSFARNCNLKLHIRRYHDKSDNTECPLCGKSFPSRG 403
C C + + L +H+R + G S PS G
Sbjct: 67 CQICPYASRNSSQLTVHLRSH-----------TGDSGPSSG 96
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 65 ADPFLCIPCNKPFSKIENYRLHQRRYHLNSVNKECKIC-HKVLRTARLSEHMKQVHYAKL 123
+ P C C K FS+ + + H R H +CK C + ++ L++H++ +
Sbjct: 6 SGPHKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERP 64
Query: 124 FDCHICGKTVVTEKNYKKHMQLHSDD 149
F C IC H++ H+ D
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSHTGD 90
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 129 CGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHK 188
C + N +H+++H+ KPF+C+ C + F +LT H+RTHTG +P F CDIC +
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGR 70
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 14/92 (15%)
Query: 208 PCTLCDKKLASERKLKEHIRKQHPTSVEADLIRREKYEREKVQCPYCAKFLSRKEKLNRH 267
P CD++ + L HIR ++ QC C + SR + L H
Sbjct: 8 PVESCDRRFSDSSNLTRHIRIH--------------TGQKPFQCRICMRNFSRSDHLTTH 53
Query: 268 IRTVHTDVNYKCEICGEEFLSKTRYNRHVVTH 299
IRT + + C+ICG +F RH H
Sbjct: 54 IRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 442 NSEPFHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCKICN 481
+PF C C + F ++T H+RTHTG P F C IC
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICG 69
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 108 TARLSEHMKQVHYAKLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAF----KL 163
++ L+ H++ K F C IC + + H++ H+ +KPF C C + F +
Sbjct: 19 SSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDER 78
Query: 164 KYYLTLHLR 172
K + +HLR
Sbjct: 79 KRHTKIHLR 87
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 67 PFLCI--PCNKPFSKIENYRLHQRRYHLNSVNKECKICHKVL-RTARLSEHMKQVHYAKL 123
P+ C C++ FS N H R H +C+IC + R+ L+ H++ K
Sbjct: 4 PYACPVESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 124 FDCHICGKTVVTEKNYKKHMQLH 146
F C ICG+ K+H ++H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 392 CPL--CGKSFPSRGRLNEHLIQVHPAQK-HQCHICNKIVVSEXXXXXXXXXXXNSEPFHC 448
CP+ C + F L H I++H QK QC IC + +PF C
Sbjct: 7 CPVESCDRRFSDSSNLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 449 PECGKAF----KFKRYVTLHMR 466
CG+ F + KR+ +H+R
Sbjct: 66 DICGRKFARSDERKRHTKIHLR 87
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 251 CPY--CAKFLSRKEKLNRHIRTVHTDVNYKCEICGEEFLSKTRYNRHVVTHEEKQKFECE 308
CP C + S L RHIR ++C IC F H+ TH ++ F C+
Sbjct: 7 CPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 309 -CG 310
CG
Sbjct: 67 ICG 69
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 16 CSYSVTIKRNLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIEIHGADPFLCIPCNK 75
C + NL HI R HT + C C R F L H G PF C C +
Sbjct: 12 CDRRFSDSSNLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 76 PFSKIENYRLH 86
F++ + + H
Sbjct: 71 KFARSDERKRH 81
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 445 PFHCP--ECGKAFKFKRYVTLHMRTHTGNWPTFVCKICNATIS 485
P+ CP C + F +T H+R HTG P F C+IC S
Sbjct: 4 PYACPVESCDRRFSDSSNLTRHIRIHTGQKP-FQCRICMRNFS 45
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 52/129 (40%), Gaps = 27/129 (20%)
Query: 100 KICHKVLRTARLSEHMKQVHYAKLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQF--C 157
K C K+ R H ++ C CGK V K+H +H+ +KPF+C F C
Sbjct: 11 KGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGC 70
Query: 158 RKAFKLKYYLTLHLRTHTGVRPMFECDICHKVLXXXXXXXXXXXXNENLRPCTLCDKKLA 217
K F L + L H+R HTG RP +C P C+KK A
Sbjct: 71 GKRFSLDFNLRTHVRIHTGDRPY----VC---------------------PFDGCNKKFA 105
Query: 218 SERKLKEHI 226
LK HI
Sbjct: 106 QSTNLKSHI 114
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 60/152 (39%), Gaps = 34/152 (22%)
Query: 245 EREKVQCPY--CAKFLSRKEKLNRHIRTVHTDVNYKCEICGEEFLSKTRYNRHVVTHEEK 302
E + CP+ C K + +H+ T H + C CG+ F+ ++ RH + H +
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHT-HGPRVHVCAECGKAFVESSKLKRHQLVHTGE 60
Query: 303 QKFECE---CGYVTCNKYRLTEHVRRTHLKDYKVLCPICGYGCFRNAELEEHFISAHSAD 359
+ F+C CG + L HV R H D +CP G
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHV-RIHTGDRPYVCPFDG-------------------- 99
Query: 360 RFKCVFCEKSFARNCNLKLHIRRYHDKSDNTE 391
C K FA++ NLK HI H K+ N +
Sbjct: 100 ------CNKKFAQSTNLKSHI-LTHAKAKNNQ 124
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 35/143 (24%)
Query: 39 SILCP--ECGRGFFNEKELAAHKIEIHGADPFLCIPCNKPFSKIENYRLHQRRYHLNSVN 96
+I CP C + F + + H + HG +C C K F +E+ +L +
Sbjct: 5 TIACPHKGCTKMFRDNSAMRKH-LHTHGPRVHVCAECGKAF--VESSKLKR--------- 52
Query: 97 KECKICHKVLRTARLSEHMKQVHYAKLFDCHI--CGKTVVTEKNYKKHMQLHSDDKPFEC 154
H+++ T K F C CGK + N + H+++H+ D+P+ C
Sbjct: 53 ------HQLVHTGE-----------KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 95
Query: 155 QF--CRKAFKLKYYLTLHLRTHT 175
F C K F L H+ TH
Sbjct: 96 PFDGCNKKFAQSTNLKSHILTHA 118
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 395 CGKSFPSRGRLNEHLIQVHPAQKHQCHICNKIVVSEXXXXXXXXXXXNSEPFHCP--ECG 452
C K F + +HL H + H C C K V +PF C CG
Sbjct: 13 CTKMFRDNSAMRKHL-HTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 453 KAFKFKRYVTLHMRTHTGNWPTFVC 477
K F + H+R HTG+ P +VC
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRP-YVC 95
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 21 TIKRNLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIEIHGADPFLCI--PCNKPFS 78
++++L H R H +C ECG+ F +L H++ G PF C C K FS
Sbjct: 22 AMRKHLHTHGPRVH------VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFS 75
Query: 79 KIENYRLHQR 88
N R H R
Sbjct: 76 LDFNLRTHVR 85
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 98 ECKICHKVL-RTARLSEHMKQVHYAKLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQF 156
+CKIC K R++ LS H+ + + C CGK + + KKH +H+ +KP +CQ
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Query: 157 CRKAFKLKYYLTLHLRTHTG 176
C KAF L H R HTG
Sbjct: 63 CGKAFSQSSNLITHSRKHTG 82
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 124 FDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
FDC ICGK+ H+ +HSD +P+ CQ+C K F K + H HTG +P +C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPH-KC 60
Query: 184 DICHKVL 190
+C K
Sbjct: 61 QVCGKAF 67
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 33/80 (41%)
Query: 391 ECPLCGKSFPSRGRLNEHLIQVHPAQKHQCHICNKIVVSEXXXXXXXXXXXNSEPFHCPE 450
+C +CGKSF L+ HL+ + + C C K + +P C
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Query: 451 CGKAFKFKRYVTLHMRTHTG 470
CGKAF + H R HTG
Sbjct: 63 CGKAFSQSSNLITHSRKHTG 82
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 251 CPYCAKFLSRKEKLNRHIRTVHTDVN-YKCEICGEEFLSKTRYNRHVVTHEEKQKFECE- 308
C C K R L+ H+ +H+D Y C+ CG+ F K+ +H H ++ +C+
Sbjct: 4 CKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV 62
Query: 309 CGYVTCNKYRLTEHVRR 325
CG L H R+
Sbjct: 63 CGKAFSQSSNLITHSRK 79
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 11 FSCSLCSYSVTIKRNLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIEIHGADPFLC 70
F C +C S L H+ H+D C CG+ F + ++ H G P C
Sbjct: 2 FDCKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 71 IPCNKPFSKIENYRLHQRRY 90
C K FS+ N H R++
Sbjct: 61 QVCGKAFSQSSNLITHSRKH 80
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 361 FKCVFCEKSFARNCNLKLHIRRYHDKSDNTECPLCGKSFPSRGRLNEHLIQVHPAQK-HQ 419
F C C KSF R+ L H+ H + C CGK F + + +H +H +K H+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTF-IHTGEKPHK 59
Query: 420 CHICNK 425
C +C K
Sbjct: 60 CQVCGK 65
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 335 CPICGYGCFRNAELEEHFISAHSADRFKCVFCEKSFARNCNLKLHIRRYHDKSDNTECPL 394
C ICG R++ L H + + C +C K F + ++K H H +C +
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT-FIHTGEKPHKCQV 62
Query: 395 CGKSFPSRGRLNEH 408
CGK+F L H
Sbjct: 63 CGKAFSQSSNLITH 76
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/108 (18%), Positives = 44/108 (40%), Gaps = 28/108 (25%)
Query: 276 NYKCEICGEEFLSKTRYNRHVVTHEEKQKFECECGYVTCNKYRLTEHVRRTHLKDYKVLC 335
++ C+ICG+ F + + H++ H + + + C+
Sbjct: 1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQ--------------------------- 33
Query: 336 PICGYGCFRNAELEEHFISAHSADRFKCVFCEKSFARNCNLKLHIRRY 383
CG + +++++H KC C K+F+++ NL H R++
Sbjct: 34 -YCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 129 CGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHK 188
C + + +H+++H+ KPF+C+ C + F +LT H+RTHTG +P F CDIC +
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGR 70
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 14/92 (15%)
Query: 208 PCTLCDKKLASERKLKEHIRKQHPTSVEADLIRREKYEREKVQCPYCAKFLSRKEKLNRH 267
P CD++ + L HIR ++ QC C + SR + L H
Sbjct: 8 PVESCDRRFSRSADLTRHIRIH--------------TGQKPFQCRICMRNFSRSDHLTTH 53
Query: 268 IRTVHTDVNYKCEICGEEFLSKTRYNRHVVTH 299
IRT + + C+ICG +F RH H
Sbjct: 54 IRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 107 RTARLSEHMKQVHYAKLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAF----K 162
R+A L+ H++ K F C IC + + H++ H+ +KPF C C + F +
Sbjct: 18 RSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDE 77
Query: 163 LKYYLTLHLR 172
K + +HLR
Sbjct: 78 RKRHTKIHLR 87
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 442 NSEPFHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCKICN 481
+PF C C + F ++T H+RTHTG P F C IC
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICG 69
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 251 CPY--CAKFLSRKEKLNRHIRTVHTDVNYKCEICGEEFLSKTRYNRHVVTHEEKQKFECE 308
CP C + SR L RHIR ++C IC F H+ TH ++ F C+
Sbjct: 7 CPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 309 -CG 310
CG
Sbjct: 67 ICG 69
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 67 PFLCI--PCNKPFSKIENYRLHQRRYHLNSVNKECKICHKVL-RTARLSEHMKQVHYAKL 123
P+ C C++ FS+ + H R H +C+IC + R+ L+ H++ K
Sbjct: 4 PYACPVESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 124 FDCHICGKTVVTEKNYKKHMQLH 146
F C ICG+ K+H ++H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 335 CPI--CGYGCFRNAELEEHFISAHSADR-FKCVFCEKSFARNCNLKLHIRRYHDKSDNTE 391
CP+ C R+A+L H I H+ + F+C C ++F+R+ +L HI R H
Sbjct: 7 CPVESCDRRFSRSADLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGEKPFA 64
Query: 392 CPLCGKSFPSRGRLNEHLIQVHPAQK 417
C +CG+ F H ++H QK
Sbjct: 65 CDICGRKFARSDERKRH-TKIHLRQK 89
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 392 CPL--CGKSFPSRGRLNEHLIQVHPAQK-HQCHICNKIVVSEXXXXXXXXXXXNSEPFHC 448
CP+ C + F L H I++H QK QC IC + +PF C
Sbjct: 7 CPVESCDRRFSRSADLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 449 PECGKAF----KFKRYVTLHMR 466
CG+ F + KR+ +H+R
Sbjct: 66 DICGRKFARSDERKRHTKIHLR 87
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 445 PFHCP--ECGKAFKFKRYVTLHMRTHTGNWPTFVCKICNATIS 485
P+ CP C + F +T H+R HTG P F C+IC S
Sbjct: 4 PYACPVESCDRRFSRSADLTRHIRIHTGQKP-FQCRICMRNFS 45
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 16 CSYSVTIKRNLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIEIHGADPFLCIPCNK 75
C + +L HI R HT + C C R F L H G PF C C +
Sbjct: 12 CDRRFSRSADLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 76 PFSKIENYRLH 86
F++ + + H
Sbjct: 71 KFARSDERKRH 81
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 129 CGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHK 188
C + + +H+++H+ KPF+C+ C + F +LT H+RTHTG +P F CDIC +
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGR 70
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 14/92 (15%)
Query: 208 PCTLCDKKLASERKLKEHIRKQHPTSVEADLIRREKYEREKVQCPYCAKFLSRKEKLNRH 267
P CD++ + L HIR ++ QC C + SR + L H
Sbjct: 8 PVESCDRRFSQSGSLTRHIRIH--------------TGQKPFQCRICMRNFSRSDHLTTH 53
Query: 268 IRTVHTDVNYKCEICGEEFLSKTRYNRHVVTH 299
IRT + + C+ICG +F RH H
Sbjct: 54 IRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 108 TARLSEHMKQVHYAKLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAF----KL 163
+ L+ H++ K F C IC + + H++ H+ +KPF C C + F +
Sbjct: 19 SGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDER 78
Query: 164 KYYLTLHLR 172
K + +HLR
Sbjct: 79 KRHTKIHLR 87
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 392 CPL--CGKSFPSRGRLNEHLIQVHPAQK-HQCHICNKIVVSEXXXXXXXXXXXNSEPFHC 448
CP+ C + F G L H I++H QK QC IC + +PF C
Sbjct: 7 CPVESCDRRFSQSGSLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 449 PECGKAF----KFKRYVTLHMR 466
CG+ F + KR+ +H+R
Sbjct: 66 DICGRKFARSDERKRHTKIHLR 87
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 67 PFLCI--PCNKPFSKIENYRLHQRRYHLNSVNKECKICHKVL-RTARLSEHMKQVHYAKL 123
P+ C C++ FS+ + H R H +C+IC + R+ L+ H++ K
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 124 FDCHICGKTVVTEKNYKKHMQLH 146
F C ICG+ K+H ++H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 251 CPY--CAKFLSRKEKLNRHIRTVHTDVNYKCEICGEEFLSKTRYNRHVVTHEEKQKFECE 308
CP C + S+ L RHIR ++C IC F H+ TH ++ F C+
Sbjct: 7 CPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 309 -CG 310
CG
Sbjct: 67 ICG 69
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 16 CSYSVTIKRNLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIEIHGADPFLCIPCNK 75
C + +L HI R HT + C C R F L H G PF C C +
Sbjct: 12 CDRRFSQSGSLTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 76 PFSKIENYRLH 86
F++ + + H
Sbjct: 71 KFARSDERKRH 81
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
Length = 87
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 11 FSCSLCSYSVTIKRNLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIEIHGADPFLC 70
+ C C S + NL H +R HT E CPECG+ F +L H+ G P+ C
Sbjct: 5 YKCPECGKSFSQSSNLQKH-QRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKC 63
Query: 71 IPCNKPFSKIENYRLHQR 88
C K FS+ ++ HQR
Sbjct: 64 PECGKSFSRSDHLSRHQR 81
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMF 181
K + C CGK+ N +KH + H+ +KP++C C K+F L H RTHTG +P +
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP-Y 61
Query: 182 ECDICHKVL 190
+C C K
Sbjct: 62 KCPECGKSF 70
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 29/108 (26%)
Query: 361 FKCVFCEKSFARNCNLKLHIRRYHDKSDNTECPLCGKSFPSRGRLNEHLIQVHPAQKHQC 420
+KC C KSF+++ NL+ H +R H +CP CGKSF L +H + H +K
Sbjct: 5 YKCPECGKSFSQSSNLQKH-QRTHTGEKPYKCPECGKSFSQSSDLQKHQ-RTHTGEK--- 59
Query: 421 HICNKIVVSEXXXXXXXXXXXNSEPFHCPECGKAFKFKRYVTLHMRTH 468
P+ CPECGK+F +++ H RTH
Sbjct: 60 ------------------------PYKCPECGKSFSRSDHLSRHQRTH 83
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 28/108 (25%)
Query: 67 PFLCIPCNKPFSKIENYRLHQRRYHLNSVNKECKICHKVLRTARLSEHMKQVHYAKLFDC 126
P+ C C K FS+ N + HQR + K + C
Sbjct: 4 PYKCPECGKSFSQSSNLQKHQRTHTGE----------------------------KPYKC 35
Query: 127 HICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTH 174
CGK+ + +KH + H+ +KP++C C K+F +L+ H RTH
Sbjct: 36 PECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTH 83
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 250 QCPYCAKFLSRKEKLNRHIRTVHTDVNYKCEICGEEFLSKTRYNRHVVTHEEKQKFEC-E 308
+CP C K S+ L +H RT + YKC CG+ F + +H TH ++ ++C E
Sbjct: 6 KCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPE 65
Query: 309 CGYVTCNKYRLTEHVRRTH 327
CG L+ H +RTH
Sbjct: 66 CGKSFSRSDHLSRH-QRTH 83
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 329 KDYKVLCPICGYGCFRNAELEEHFISAHSADRFKCVFCEKSFARNCNLKLHIRRYHDKSD 388
K YK CP CG +++ L++H + +KC C KSF+++ +L+ H +R H
Sbjct: 3 KPYK--CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKH-QRTHTGEK 59
Query: 389 NTECPLCGKSFPSRGRLNEH 408
+CP CGKSF L+ H
Sbjct: 60 PYKCPECGKSFSRSDHLSRH 79
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 308 ECGYVTCNKYRLTEHVRRTHLKDYKVLCPICGYGCFRNAELEEHFISAHSADRFKCVFCE 367
ECG L +H +RTH + CP CG ++++L++H + +KC C
Sbjct: 9 ECGKSFSQSSNLQKH-QRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECG 67
Query: 368 KSFARNCNLKLHIRRYHDK 386
KSF+R+ +L H R + +K
Sbjct: 68 KSFSRSDHLSRHQRTHQNK 86
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 277 YKCEICGEEFLSKTRYNRHVVTHEEKQKFEC-ECGYVTCNKYRLTEHVRRTHLKDYKVLC 335
YKC CG+ F + +H TH ++ ++C ECG L +H +RTH + C
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKH-QRTHTGEKPYKC 63
Query: 336 PICGYGCFRNAELEEH 351
P CG R+ L H
Sbjct: 64 PECGKSFSRSDHLSRH 79
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%)
Query: 250 QCPYCAKFLSRKEKLNRHIRTVHTDVNYKCEICGEEFLSKTRYNRHVVTHEEKQ 303
+CP C K S+ L +H RT + YKC CG+ F +RH TH+ K+
Sbjct: 34 KCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCKICNATIS 485
+P+ CPECGK+F + H RTHTG P + C C + S
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKP-YKCPECGKSFS 43
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHKVLXXXXXXXXXXXXNENLRP 208
+KP++C C K+F L H RTHTG +P ++C C K + +P
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKP-YKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 209 --CTLCDKKLASERKLKEHIR 227
C C K + L H R
Sbjct: 61 YKCPECGKSFSRSDHLSRHQR 81
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 129 CGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDIC 186
C + + N H+++H+ KPF+C+ C + F + L H+RTHTG +P F CDIC
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP-FACDIC 68
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 14/92 (15%)
Query: 208 PCTLCDKKLASERKLKEHIRKQHPTSVEADLIRREKYEREKVQCPYCAKFLSRKEKLNRH 267
P CD++ + + L HIR ++ QC C + S++ LN H
Sbjct: 8 PVESCDRRFSQKTNLDTHIRIH--------------TGQKPFQCRICMRNFSQQASLNAH 53
Query: 268 IRTVHTDVNYKCEICGEEFLSKTRYNRHVVTH 299
IRT + + C+ICG +F + RH H
Sbjct: 54 IRTHTGEKPFACDICGRKFATLHTRTRHTKIH 85
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 251 CPY--CAKFLSRKEKLNRHIRTVHTDVNYKCEICGEEFLSKTRYNRHVVTHEEKQKFECE 308
CP C + S+K L+ HIR ++C IC F + N H+ TH ++ F C+
Sbjct: 7 CPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACD 66
Query: 309 CGYVTCNKYRLTEHVRRTHLK 329
C + T H R H K
Sbjct: 67 ----ICGRKFATLHTRTRHTK 83
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 111 LSEHMKQVHYAKLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLH 170
L H++ K F C IC + + + H++ H+ +KPF C C + F + T H
Sbjct: 22 LDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRH 81
Query: 171 LRTH 174
+ H
Sbjct: 82 TKIH 85
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 9/79 (11%)
Query: 392 CPL--CGKSFPSRGRLNEHLIQVHPAQK-HQCHICNKIVVSEXXXXXXXXXXXNSEPFHC 448
CP+ C + F + L+ H I++H QK QC IC + + +PF C
Sbjct: 7 CPVESCDRRFSQKTNLDTH-IRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFAC 65
Query: 449 PECGKAFKFKRYVTLHMRT 467
CG+ F TLH RT
Sbjct: 66 DICGRKF-----ATLHTRT 79
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 16 CSYSVTIKRNLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIEIHGADPFLCIPCNK 75
C + K NL HI R HT + C C R F + L AH G PF C C +
Sbjct: 12 CDRRFSQKTNLDTHI-RIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGR 70
Query: 76 PFSKIENYRLHQR 88
F+ + H +
Sbjct: 71 KFATLHTRTRHTK 83
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 442 NSEPFHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCKICNATISS 486
+PF C C + F + + H+RTHTG P F C IC ++
Sbjct: 31 GQKPFQCRICMRNFSQQASLNAHIRTHTGEKP-FACDICGRKFAT 74
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 67 PFLCI--PCNKPFSKIENYRLHQRRYHLNSVNKECKICHKVL-RTARLSEHMKQVHYAKL 123
P+ C C++ FS+ N H R H +C+IC + + A L+ H++ K
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 124 FDCHICGKTVVTEKNYKKHMQLH 146
F C ICG+ T +H ++H
Sbjct: 63 FACDICGRKFATLHTRTRHTKIH 85
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 445 PFHCP--ECGKAFKFKRYVTLHMRTHTGNWPTFVCKICNATISSE 487
P+ CP C + F K + H+R HTG P F C+IC S +
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKP-FQCRICMRNFSQQ 47
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 335 CPI--CGYGCFRNAELEEHFISAHSADR-FKCVFCEKSFARNCNLKLHIRRYHDKSDNTE 391
CP+ C + L+ H I H+ + F+C C ++F++ +L HI R H
Sbjct: 7 CPVESCDRRFSQKTNLDTH-IRIHTGQKPFQCRICMRNFSQQASLNAHI-RTHTGEKPFA 64
Query: 392 CPLCGKSFPS 401
C +CG+ F +
Sbjct: 65 CDICGRKFAT 74
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 129 CGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHK 188
C + +H+++H+ KPF+C+ C + F +LT H+RTHTG +P F CDIC +
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGR 70
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 14/92 (15%)
Query: 208 PCTLCDKKLASERKLKEHIRKQHPTSVEADLIRREKYEREKVQCPYCAKFLSRKEKLNRH 267
P CD++ + +L HIR ++ QC C + SR + L H
Sbjct: 8 PVESCDRRFSRSAELTRHIRIH--------------TGQKPFQCRICMRNFSRSDHLTTH 53
Query: 268 IRTVHTDVNYKCEICGEEFLSKTRYNRHVVTH 299
IRT + + C+ICG +F RH H
Sbjct: 54 IRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 107 RTARLSEHMKQVHYAKLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAF----K 162
R+A L+ H++ K F C IC + + H++ H+ +KPF C C + F +
Sbjct: 18 RSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDE 77
Query: 163 LKYYLTLHLR 172
K + +HLR
Sbjct: 78 RKRHTKIHLR 87
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 442 NSEPFHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCKICN 481
+PF C C + F ++T H+RTHTG P F C IC
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICG 69
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 335 CPI--CGYGCFRNAELEEHFISAHSADR-FKCVFCEKSFARNCNLKLHIRRYHDKSDNTE 391
CP+ C R+AEL H I H+ + F+C C ++F+R+ +L HI R H
Sbjct: 7 CPVESCDRRFSRSAELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGEKPFA 64
Query: 392 CPLCGKSFPSRGRLNEHLIQVHPAQK 417
C +CG+ F H ++H QK
Sbjct: 65 CDICGRKFARSDERKRH-TKIHLRQK 89
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 251 CPY--CAKFLSRKEKLNRHIRTVHTDVNYKCEICGEEFLSKTRYNRHVVTHEEKQKFECE 308
CP C + SR +L RHIR ++C IC F H+ TH ++ F C+
Sbjct: 7 CPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 309 -CG 310
CG
Sbjct: 67 ICG 69
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 67 PFLCI--PCNKPFSKIENYRLHQRRYHLNSVNKECKICHKVL-RTARLSEHMKQVHYAKL 123
P+ C C++ FS+ H R H +C+IC + R+ L+ H++ K
Sbjct: 4 PYACPVESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 124 FDCHICGKTVVTEKNYKKHMQLH 146
F C ICG+ K+H ++H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 392 CPL--CGKSFPSRGRLNEHLIQVHPAQK-HQCHICNKIVVSEXXXXXXXXXXXNSEPFHC 448
CP+ C + F L H I++H QK QC IC + +PF C
Sbjct: 7 CPVESCDRRFSRSAELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 449 PECGKAF----KFKRYVTLHMR 466
CG+ F + KR+ +H+R
Sbjct: 66 DICGRKFARSDERKRHTKIHLR 87
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 445 PFHCP--ECGKAFKFKRYVTLHMRTHTGNWPTFVCKICNATIS 485
P+ CP C + F +T H+R HTG P F C+IC S
Sbjct: 4 PYACPVESCDRRFSRSAELTRHIRIHTGQKP-FQCRICMRNFS 45
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 16 CSYSVTIKRNLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIEIHGADPFLCIPCNK 75
C + L HI R HT + C C R F L H G PF C C +
Sbjct: 12 CDRRFSRSAELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 76 PFSKIENYRLH 86
F++ + + H
Sbjct: 71 KFARSDERKRH 81
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 129 CGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDIC 186
C + +H+++H+ KPF+C+ C + F +LT H+RTHTG +P F CDIC
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDIC 68
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 14/92 (15%)
Query: 208 PCTLCDKKLASERKLKEHIRKQHPTSVEADLIRREKYEREKVQCPYCAKFLSRKEKLNRH 267
P CD++ + +L HIR ++ QC C + SR + L H
Sbjct: 8 PVESCDRRFSRSDELTRHIRIH--------------TGQKPFQCRICMRNFSRSDHLTTH 53
Query: 268 IRTVHTDVNYKCEICGEEFLSKTRYNRHVVTH 299
IRT + + C+ICG +F RH H
Sbjct: 54 IRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 107 RTARLSEHMKQVHYAKLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAF----K 162
R+ L+ H++ K F C IC + + H++ H+ +KPF C C + F +
Sbjct: 18 RSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDE 77
Query: 163 LKYYLTLHLR 172
K + +HLR
Sbjct: 78 RKRHTKIHLR 87
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 442 NSEPFHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCKICN 481
+PF C C + F ++T H+RTHTG P F C IC
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICG 69
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 251 CPY--CAKFLSRKEKLNRHIRTVHTDVNYKCEICGEEFLSKTRYNRHVVTHEEKQKFECE 308
CP C + SR ++L RHIR ++C IC F H+ TH ++ F C+
Sbjct: 7 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 309 -CG 310
CG
Sbjct: 67 ICG 69
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 40/113 (35%), Gaps = 32/113 (28%)
Query: 37 EFSILCP--ECGRGFFNEKELAAHKIEIH-GADPFLCIPCNKPFSKIENYRLHQRRYHLN 93
E CP C R F EL H I IH G PF C C + FS
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFS--------------- 45
Query: 94 SVNKECKICHKVLRTARLSEHMKQVHYAKLFDCHICGKTVVTEKNYKKHMQLH 146
R+ L+ H++ K F C ICG+ K+H ++H
Sbjct: 46 -------------RSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 335 CPI--CGYGCFRNAELEEHFISAHSADR-FKCVFCEKSFARNCNLKLHIRRYHDKSDNTE 391
CP+ C R+ EL H I H+ + F+C C ++F+R+ +L HI R H
Sbjct: 7 CPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGEKPFA 64
Query: 392 CPLCGKSF 399
C +CG+ F
Sbjct: 65 CDICGRKF 72
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 392 CPL--CGKSFPSRGRLNEHLIQVHPAQK-HQCHICNKIVVSEXXXXXXXXXXXNSEPFHC 448
CP+ C + F L H I++H QK QC IC + +PF C
Sbjct: 7 CPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 449 PECGKAF----KFKRYVTLHMR 466
CG+ F + KR+ +H+R
Sbjct: 66 DICGRKFARSDERKRHTKIHLR 87
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 445 PFHCP--ECGKAFKFKRYVTLHMRTHTGNWPTFVCKICNATIS 485
P+ CP C + F +T H+R HTG P F C+IC S
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFS 45
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 16 CSYSVTIKRNLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIEIHGADPFLCIPCNK 75
C + L HI R HT + C C R F L H G PF C C +
Sbjct: 12 CDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 76 PFSKIENYRLH 86
F++ + + H
Sbjct: 71 KFARSDERKRH 81
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 129 CGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHK 188
C + +H+++H+ KPF+C+ C + F +LT H+RTHTG +P F CDIC +
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGR 69
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 14/92 (15%)
Query: 208 PCTLCDKKLASERKLKEHIRKQHPTSVEADLIRREKYEREKVQCPYCAKFLSRKEKLNRH 267
P CD++ + +L HIR ++ QC C + SR + L H
Sbjct: 7 PVESCDRRFSRSDELTRHIRIH--------------TGQKPFQCRICMRNFSRSDHLTTH 52
Query: 268 IRTVHTDVNYKCEICGEEFLSKTRYNRHVVTH 299
IRT + + C+ICG +F RH H
Sbjct: 53 IRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 107 RTARLSEHMKQVHYAKLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAF----K 162
R+ L+ H++ K F C IC + + H++ H+ +KPF C C + F +
Sbjct: 17 RSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDE 76
Query: 163 LKYYLTLHLR 172
K + +HLR
Sbjct: 77 RKRHTKIHLR 86
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 442 NSEPFHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCKICN 481
+PF C C + F ++T H+RTHTG P F C IC
Sbjct: 30 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICG 68
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 251 CPY--CAKFLSRKEKLNRHIRTVHTDVNYKCEICGEEFLSKTRYNRHVVTHEEKQKFECE 308
CP C + SR ++L RHIR ++C IC F H+ TH ++ F C+
Sbjct: 6 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 65
Query: 309 -CG 310
CG
Sbjct: 66 ICG 68
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 40/113 (35%), Gaps = 32/113 (28%)
Query: 37 EFSILCP--ECGRGFFNEKELAAHKIEIH-GADPFLCIPCNKPFSKIENYRLHQRRYHLN 93
E CP C R F EL H I IH G PF C C + FS
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFS--------------- 44
Query: 94 SVNKECKICHKVLRTARLSEHMKQVHYAKLFDCHICGKTVVTEKNYKKHMQLH 146
R+ L+ H++ K F C ICG+ K+H ++H
Sbjct: 45 -------------RSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 335 CPI--CGYGCFRNAELEEHFISAHSADR-FKCVFCEKSFARNCNLKLHIRRYHDKSDNTE 391
CP+ C R+ EL H I H+ + F+C C ++F+R+ +L HI R H
Sbjct: 6 CPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGEKPFA 63
Query: 392 CPLCGKSF 399
C +CG+ F
Sbjct: 64 CDICGRKF 71
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 392 CPL--CGKSFPSRGRLNEHLIQVHPAQK-HQCHICNKIVVSEXXXXXXXXXXXNSEPFHC 448
CP+ C + F L H I++H QK QC IC + +PF C
Sbjct: 6 CPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 64
Query: 449 PECGKAF----KFKRYVTLHMR 466
CG+ F + KR+ +H+R
Sbjct: 65 DICGRKFARSDERKRHTKIHLR 86
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 445 PFHCP--ECGKAFKFKRYVTLHMRTHTGNWPTFVCKICNATIS 485
P+ CP C + F +T H+R HTG P F C+IC S
Sbjct: 3 PYACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFS 44
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 16 CSYSVTIKRNLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIEIHGADPFLCIPCNK 75
C + L HI R HT + C C R F L H G PF C C +
Sbjct: 11 CDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 69
Query: 76 PFSKIENYRLH 86
F++ + + H
Sbjct: 70 KFARSDERKRH 80
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 129 CGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHK 188
C + +H+++H+ KPF+C+ C + F +LT H+RTHTG +P F CDIC +
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGR 70
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 14/92 (15%)
Query: 208 PCTLCDKKLASERKLKEHIRKQHPTSVEADLIRREKYEREKVQCPYCAKFLSRKEKLNRH 267
P CD++ + +L HIR ++ QC C + SR + L H
Sbjct: 8 PVESCDRRFSRSDELTRHIRIH--------------TGQKPFQCRICMRNFSRSDHLTTH 53
Query: 268 IRTVHTDVNYKCEICGEEFLSKTRYNRHVVTH 299
IRT + + C+ICG +F RH H
Sbjct: 54 IRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 107 RTARLSEHMKQVHYAKLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAF----K 162
R+ L+ H++ K F C IC + + H++ H+ +KPF C C + F +
Sbjct: 18 RSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDE 77
Query: 163 LKYYLTLHLR 172
K + +HLR
Sbjct: 78 RKRHTKIHLR 87
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 442 NSEPFHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCKICN 481
+PF C C + F ++T H+RTHTG P F C IC
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICG 69
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 251 CPY--CAKFLSRKEKLNRHIRTVHTDVNYKCEICGEEFLSKTRYNRHVVTHEEKQKFECE 308
CP C + SR ++L RHIR ++C IC F H+ TH ++ F C+
Sbjct: 7 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACD 66
Query: 309 -CG 310
CG
Sbjct: 67 ICG 69
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 67 PFLCI--PCNKPFSKIENYRLHQRRYHLNSVNKECKICHKVL-RTARLSEHMKQVHYAKL 123
P+ C C++ FS+ + H R H +C+IC + R+ L+ H++ K
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 124 FDCHICGKTVVTEKNYKKHMQLH 146
F C ICG+ K+H ++H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 335 CPI--CGYGCFRNAELEEHFISAHSADR-FKCVFCEKSFARNCNLKLHIRRYHDKSDNTE 391
CP+ C R+ EL H I H+ + F+C C ++F+R+ +L HI R H
Sbjct: 7 CPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHI-RTHTGEKPFA 64
Query: 392 CPLCGKSFPSRGRLNEHLIQVHPAQK 417
C +CG+ F H ++H QK
Sbjct: 65 CDICGRKFARSDERKRH-TKIHLRQK 89
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 392 CPL--CGKSFPSRGRLNEHLIQVHPAQK-HQCHICNKIVVSEXXXXXXXXXXXNSEPFHC 448
CP+ C + F L H I++H QK QC IC + +PF C
Sbjct: 7 CPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC 65
Query: 449 PECGKAF----KFKRYVTLHMR 466
CG+ F + KR+ +H+R
Sbjct: 66 DICGRKFARSDERKRHTKIHLR 87
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 445 PFHCP--ECGKAFKFKRYVTLHMRTHTGNWPTFVCKICNATIS 485
P+ CP C + F +T H+R HTG P F C+IC S
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFS 45
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 16 CSYSVTIKRNLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIEIHGADPFLCIPCNK 75
C + L HI R HT + C C R F L H G PF C C +
Sbjct: 12 CDRRFSRSDELTRHI-RIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 76 PFSKIENYRLH 86
F++ + + H
Sbjct: 71 KFARSDERKRH 81
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 129 CGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDIC 186
C + + N H+++H+ KPF+C+ C + F L H+RTHTG +P F CDIC
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP-FACDIC 68
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 208 PCTLCDKKLASERKLKEHIRKQHPTSVEADLIRREKYEREKVQCPYCAKFLSRKEKLNRH 267
P CD++ + + L HIR ++ QC C + S+ LN+H
Sbjct: 8 PVESCDRRFSQKTNLDTHIRIH--------------TGQKPFQCRICMRNFSQHTGLNQH 53
Query: 268 IRTVHTDVNYKCEICGEEFLSKTRYNRHVVTH 299
IRT + + C+ICG +F + +RH H
Sbjct: 54 IRTHTGEKPFACDICGRKFATLHTRDRHTKIH 85
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 251 CPY--CAKFLSRKEKLNRHIRTVHTDVNYKCEICGEEFLSKTRYNRHVVTHEEKQKFECE 308
CP C + S+K L+ HIR ++C IC F T N+H+ TH ++ F C+
Sbjct: 7 CPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACD 66
Query: 309 CGYVTCNKYRLTEHVRRTHLK 329
C + T H R H K
Sbjct: 67 ----ICGRKFATLHTRDRHTK 83
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 28/64 (43%)
Query: 111 LSEHMKQVHYAKLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLH 170
L H++ K F C IC + +H++ H+ +KPF C C + F + H
Sbjct: 22 LDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRH 81
Query: 171 LRTH 174
+ H
Sbjct: 82 TKIH 85
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 442 NSEPFHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCKICNATISS 486
+PF C C + F + H+RTHTG P F C IC ++
Sbjct: 31 GQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP-FACDICGRKFAT 74
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 67 PFLCI--PCNKPFSKIENYRLHQRRYHLNSVNKECKICHKVLRT-ARLSEHMKQVHYAKL 123
P+ C C++ FS+ N H R H +C+IC + L++H++ K
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 124 FDCHICGKTVVTEKNYKKHMQLH 146
F C ICG+ T +H ++H
Sbjct: 63 FACDICGRKFATLHTRDRHTKIH 85
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 366 CEKSFARNCNLKLHIRRYHDKSDNTECPLCGKSFPSRGRLNEHLIQVHPAQK-HQCHICN 424
C++ F++ NL HIR H +C +C ++F LN+H I+ H +K C IC
Sbjct: 12 CDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQH-IRTHTGEKPFACDICG 69
Query: 425 K 425
+
Sbjct: 70 R 70
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 392 CPL--CGKSFPSRGRLNEHLIQVHPAQK-HQCHICNKIVVSEXXXXXXXXXXXNSEPFHC 448
CP+ C + F + L+ H I++H QK QC IC + +PF C
Sbjct: 7 CPVESCDRRFSQKTNLDTH-IRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFAC 65
Query: 449 PECGKAFKFKRYVTLHMR 466
CG+ F TLH R
Sbjct: 66 DICGRKF-----ATLHTR 78
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 445 PFHCP--ECGKAFKFKRYVTLHMRTHTGNWPTFVCKICNATIS 485
P+ CP C + F K + H+R HTG P F C+IC S
Sbjct: 4 PYACPVESCDRRFSQKTNLDTHIRIHTGQKP-FQCRICMRNFS 45
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 16 CSYSVTIKRNLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIEIHGADPFLCIPCNK 75
C + K NL HI R HT + C C R F L H G PF C C +
Sbjct: 12 CDRRFSQKTNLDTHI-RIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGR 70
Query: 76 PFSKIENYRLH 86
F+ + H
Sbjct: 71 KFATLHTRDRH 81
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 335 CPI--CGYGCFRNAELEEHFISAHSADR-FKCVFCEKSFARNCNLKLHIRRYHDKSDNTE 391
CP+ C + L+ H I H+ + F+C C ++F+++ L HI R H
Sbjct: 7 CPVESCDRRFSQKTNLDTH-IRIHTGQKPFQCRICMRNFSQHTGLNQHI-RTHTGEKPFA 64
Query: 392 CPLCGKSFPSRGRLNEHLIQVHPAQK 417
C +CG+ F + + H ++H QK
Sbjct: 65 CDICGRKFATLHTRDRH-TKIHLRQK 89
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C ECGKAF+ K Y+ +HMRTHTG P+
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTHTGEKPS 39
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 150 KPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
KP+ C C KAF+ K YL +H+RTHTG +P
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+ + C CGK+ + KH + H+ +KP++C C KAF + +L H R HTG P
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 242 EKYEREKVQCPYCAKFLSRKEKLNRHIRTVHTDVNYKCEICGEEFLSKTRYNRHVVTH 299
++ ER + +C C K S L++H RT + YKC+ CG+ F+ ++ H++ H
Sbjct: 12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRS----HLIGH 65
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 416 QKHQCHICNKIVVSEXXXXXXXXXXXNSEPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
++++C C K +P+ C ECGKAF + ++ H R HTG+ P+
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 2 EHSQEDTEKFSCSLCSYSVTIKRNLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIE 61
E Q + ++ C C S + +L H +R HT E C ECG+ F L H
Sbjct: 10 EWQQRERRRYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGHHRV 68
Query: 62 IHGADP 67
G+ P
Sbjct: 69 HTGSGP 74
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 360 RFKCVFCEKSFARNCNLKLHIRRYHDKSDNTECPLCGKSFPSRGRLNEH 408
R+KC C KSF+ + +L H RR H +C CGK+F R L H
Sbjct: 18 RYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 42 CPECGRGFFNEKELAAHKIEIHGADPFLCIPCNKPFSK----IENYRLH 86
C ECG+ F + +L+ H+ G P+ C C K F + I ++R+H
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 277 YKCEICGEEFLSKTRYNRHVVTHEEKQKFEC-ECGYVTCNKYRLTEHVR 324
YKC+ CG+ F + ++H TH ++ ++C ECG + L H R
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR 67
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 150 KPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHK 188
KPF+C+ C + F +LT H+RTHTG +P F CDIC +
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGR 39
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCKICN 481
+PF C C + F ++T H+RTHTG P F C IC
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICG 38
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 250 QCPYCAKFLSRKEKLNRHIRTVHTDVNYKCEICGEEFLSKTRYNRH 295
QC C + SR + L HIRT + + C+ICG +F RH
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAF 161
K F C IC + + H++ H+ +KPF C C + F
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKF 41
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 11 FSCSLCSYSVTIKRNLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIEIHGADPFLC 70
F C +C + + +L HI R HT E C CGR F E H+ +I P L
Sbjct: 4 FQCRICMRNFSRSDHLTTHI-RTHTGEKPFACDICGRKFARSDERKRHR-DIQHILPILE 61
Query: 71 IPCNKPFSKIENYRL 85
+ SK NY L
Sbjct: 62 DKVEELLSK--NYHL 74
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 361 FKCVFCEKSFARNCNLKLHIRRYHDKSDNTECPLCGKSF 399
F+C C ++F+R+ +L HI R H C +CG+ F
Sbjct: 4 FQCRICMRNFSRSDHLTTHI-RTHTGEKPFACDICGRKF 41
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 26/143 (18%)
Query: 35 TDEFSILCPECGRGFFNEKELAAHKIEIHGADPFLCIPCNKPFSKIENYRLHQRRYHLNS 94
+ + CP C + F ++ L H + G PF C C K + + EN H+ R N
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEAR---NC 59
Query: 95 VNKECKICHKVLRTARLSEHMKQVHYAKLFDCHICGKTVVTEKNYKKHMQLHSDDKPFEC 154
+N+ ++F C +C +T + HM H+ + P++C
Sbjct: 60 MNRS----------------------EQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKC 97
Query: 155 QFCRKAFKLKYYLTLHL-RTHTG 176
C + F K L H+ + H+G
Sbjct: 98 SSCSQQFMQKKDLQSHMIKLHSG 120
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 93 NSVNKECKICHK-VLRTARLSEHMKQVHYAKLFDCHICGKTVVTEKNYKKHMQ---LHSD 148
S EC CHK L L H ++ K F+C CGK ++N +H ++
Sbjct: 4 GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRS 63
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDIC 186
++ F C C++ F+ + L LH+ +HTG P ++C C
Sbjct: 64 EQVFTCSVCQETFRRRMELRLHMVSHTGEMP-YKCSSC 100
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 58/153 (37%), Gaps = 42/153 (27%)
Query: 147 SDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHKVLXXXXXXXXXXXXNENL 206
S EC C K F KYYL +H R HTG +P FEC C K
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKCGKC----------------- 44
Query: 207 RPCTLCDKKLASERKLKEHIRKQHPTSVEAD--LIRREKYEREKVQCPYCAKFLSRKEKL 264
+ RK++ EA + R E+ C C + R+ +L
Sbjct: 45 ------------------YFRKENLLEHEARNCMNRSEQV----FTCSVCQETFRRRMEL 82
Query: 265 NRHIRTVHTDVNYKCEICGEEFLSKTRYNRHVV 297
H+ + ++ YKC C ++F+ K H++
Sbjct: 83 RLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMI 115
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Query: 276 NYKCEICGEEFLSKTRYNRHVVTHEEKQKFEC-ECGYVTCNKYRLTEHVRRTHL--KDYK 332
+C C ++FLSK H H ++ FEC +CG K L EH R + +
Sbjct: 7 GVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV 66
Query: 333 VLCPICGYGCFRNAELEEHFISAHSADRFKCVFCEKSFARNCNLKLHIRRYHD 385
C +C R EL H +S +KC C + F + +L+ H+ + H
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 6/122 (4%)
Query: 4 SQEDTEKFSCSLCSYSVTIKRNLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIE-- 61
+ C C K L +H RKHT E CP+CG+ +F ++ L H+
Sbjct: 1 GSSGSSGVECPTCHKKFLSKYYLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEHEARNC 59
Query: 62 -IHGADPFLCIPCNKPFSKIENYRLHQRRYHLNSVNKECKIC-HKVLRTARLSEHMKQVH 119
F C C + F + RLH H + +C C + ++ L HM ++H
Sbjct: 60 MNRSEQVFTCSVCQETFRRRMELRLHMVS-HTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Query: 120 YA 121
Sbjct: 119 SG 120
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 5/121 (4%)
Query: 354 SAHSADRFKCVFCEKSFARNCNLKLHIRRYHDKSDNTECPLCGKSFPSRGRLNEHLIQV- 412
+ + +C C K F LK+H R+ H ECP CGK + + L EH +
Sbjct: 1 GSSGSSGVECPTCHKKFLSKYYLKVHNRK-HTGEKPFECPKCGKCYFRKENLLEHEARNC 59
Query: 413 --HPAQKHQCHICNKIVVSEXXXXXXXXXXXNSEPFHCPECGKAFKFKRYVTLHM-RTHT 469
Q C +C + P+ C C + F K+ + HM + H+
Sbjct: 60 MNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Query: 470 G 470
G
Sbjct: 120 G 120
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
Query: 387 SDNTECPLCGKSFPSRGRLNEHLIQVHPAQKHQCHICNKIVVSEXXXXXXXX---XXXNS 443
S ECP C K F S+ L H + + +C C K + +
Sbjct: 5 SSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSE 64
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCKICN 481
+ F C C + F+ + + LHM +HTG P + C C+
Sbjct: 65 QVFTCSVCQETFRRRMELRLHMVSHTGEMP-YKCSSCS 101
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 442 NSEPFHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCKICN 481
S CP C K F K Y+ +H R HTG P F C C
Sbjct: 4 GSSGVECPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKCG 42
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 419 QCHICNKIVVSEXXXXXXXXXXXNSEPFHCPECGKAFKFKRYVTLHMRTHTGNWP--TFV 476
+C C+K +S+ +PF CP+CGK + K + H + N F
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 477 CKICNATI 484
C +C T
Sbjct: 69 CSVCQETF 76
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 129 CGKTVVTEKNYKKHMQLHSDDKPFECQF--CRKAFKLKYYLTLHLRTHTGVRPMFECDIC 186
CGKT + K H++ H+ +KP+ C + C F LT H R HTG RP F+C C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP-FQCQKC 72
Query: 187 HKVL 190
+
Sbjct: 73 DRAF 76
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 309 CGYVTCNK-YRLTEHVR---RTHL--KDYKVLCPICGYGCFRNAELEEHFISAHSADRFK 362
C Y C K Y + H++ RTH K Y CG+ R+ EL H+ F+
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 68
Query: 363 CVFCEKSFARNCNLKLHIRRY 383
C C+++F+R+ +L LH++R+
Sbjct: 69 CQKCDRAFSRSDHLALHMKRH 89
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 16 CSYSVTIKRNLIMHIKRKHTDEFSILCP--ECGRGFFNEKELAAHKIEIHGADPFLCIPC 73
C + T +L H+ R HT E C CG F EL H + G PF C C
Sbjct: 14 CGKTYTKSSHLKAHL-RTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 72
Query: 74 NKPFSKIENYRLHQRRY 90
++ FS+ ++ LH +R+
Sbjct: 73 DRAFSRSDHLALHMKRH 89
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 125 DCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTH 174
D CG +H + H+ +PF+CQ C +AF +L LH++ H
Sbjct: 40 DWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 423 CNKIVVSEXXXXXXXXXXXNSEPFHCPECGKAFKFKRY--VTLHMRTHTGNWPTFVCKIC 480
C K +P+HC G +KF R +T H R HTG+ P F C+ C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP-FQCQKC 72
Query: 481 NATIS 485
+ S
Sbjct: 73 DRAFS 77
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 254 CAKFLSRKEKLNRHIRTVHTDVNYKCEI--CGEEFLSKTRYNRHVVTHEEKQKFECE 308
C K ++ L H+RT + Y C+ CG +F RH H + F+C+
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQ 70
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 395 CGKSFPSRGRLNEHLIQVHPAQK-HQCHI--CNKIVVSEXXXXXXXXXXXNSEPFHCPEC 451
CGK++ L HL + H +K + C C PF C +C
Sbjct: 14 CGKTYTKSSHLKAHL-RTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 72
Query: 452 GKAFKFKRYVTLHMRTH 468
+AF ++ LHM+ H
Sbjct: 73 DRAFSRSDHLALHMKRH 89
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 129 CGKTVVTEKNYKKHMQLHSDDKPFECQF--CRKAFKLKYYLTLHLRTHTGVRPMFECDIC 186
CGKT + K H++ H+ +KP+ C + C F LT H R HTG RP F+C C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP-FQCQKC 71
Query: 187 HKVL 190
+
Sbjct: 72 DRAF 75
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 309 CGYVTCNK-YRLTEHVR---RTHL--KDYKVLCPICGYGCFRNAELEEHFISAHSADRFK 362
C Y C K Y + H++ RTH K Y CG+ R+ EL H+ F+
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ 67
Query: 363 CVFCEKSFARNCNLKLHIRRY 383
C C+++F+R+ +L LH++R+
Sbjct: 68 CQKCDRAFSRSDHLALHMKRH 88
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 16 CSYSVTIKRNLIMHIKRKHTDEFSILCP--ECGRGFFNEKELAAHKIEIHGADPFLCIPC 73
C + T +L H+ R HT E C CG F EL H + G PF C C
Sbjct: 13 CGKTYTKSSHLKAHL-RTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 71
Query: 74 NKPFSKIENYRLHQRRY 90
++ FS+ ++ LH +R+
Sbjct: 72 DRAFSRSDHLALHMKRH 88
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 125 DCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTH 174
D CG +H + H+ +PF+CQ C +AF +L LH++ H
Sbjct: 39 DWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 423 CNKIVVSEXXXXXXXXXXXNSEPFHCPECGKAFKFKRY--VTLHMRTHTGNWPTFVCKIC 480
C K +P+HC G +KF R +T H R HTG+ P F C+ C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP-FQCQKC 71
Query: 481 NATIS 485
+ S
Sbjct: 72 DRAFS 76
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 395 CGKSFPSRGRLNEHLIQVHPAQK-HQCHI--CNKIVVSEXXXXXXXXXXXNSEPFHCPEC 451
CGK++ L HL + H +K + C C PF C +C
Sbjct: 13 CGKTYTKSSHLKAHL-RTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 71
Query: 452 GKAFKFKRYVTLHMRTH 468
+AF ++ LHM+ H
Sbjct: 72 DRAFSRSDHLALHMKRH 88
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 254 CAKFLSRKEKLNRHIRTVHTDVNYKCEI--CGEEFLSKTRYNRHVVTHEEKQKFECE 308
C K ++ L H+RT + Y C+ CG +F RH H + F+C+
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQ 69
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C ECGKAF K Y+ +HMRTH+G P+
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKPS 41
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP+ C C KAF K YL +H+RTH+G +P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 67 PFLCI--PCNKPFSKIENYRLHQRRYHLNSVNKEC--KICHKVL-RTARLSEHMKQVHYA 121
PF+C CNK + K+ + ++H R+ H +C K C + R+ +L H ++
Sbjct: 6 PFMCAYPGCNKRYFKLSHLQMHSRK-HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQF--CRKAFKLKYYLTLHLRTH 174
K F C C + + K H + H+ +KPF C++ C+K F L H H
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 15 LCSYSVTIKR-----NLIMHIKRKHTDEFSILCP--ECGRGFFNEKELAAHKIEIHGADP 67
+C+Y KR +L MH RKHT E C +C R F +L H+ G P
Sbjct: 8 MCAYPGCNKRYFKLSHLQMH-SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 68 FLCIPCNKPFSKIENYRLHQR 88
F C C + FS+ ++ + H R
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTR 87
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 147 SDDKPFECQF--CRKAFKLKYYLTLHLRTHTGVRPMFECDI--CHKVLXXXXXXXXXXXX 202
S+ +PF C + C K + +L +H R HTG +P ++CD C +
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKP-YQCDFKDCERRFSRSDQLKRHQRR 60
Query: 203 NENLRP--CTLCDKKLASERKLKEHIR 227
+ ++P C C +K + LK H R
Sbjct: 61 HTGVKPFQCKTCQRKFSRSDHLKTHTR 87
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 7/107 (6%)
Query: 309 CGYVTCNK-----YRLTEHVRR-THLKDYKVLCPICGYGCFRNAELEEHFISAHSADRFK 362
C Y CNK L H R+ T K Y+ C R+ +L+ H F+
Sbjct: 9 CAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQ 68
Query: 363 CVFCEKSFARNCNLKLHIRRY-HDKSDNTECPLCGKSFPSRGRLNEH 408
C C++ F+R+ +LK H R + +K + P C K F L H
Sbjct: 69 CKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 250 QCPY--CAKFLSRKEKLNRHIRTVHTDVN-YKCEICGEEFLSKTRYNRHVVTHEEKQKFE 306
QC + C + SR ++L RH R HT V ++C+ C +F H TH ++ F
Sbjct: 38 QCDFKDCERRFSRSDQLKRHQRR-HTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFS 96
Query: 307 CECGYVTCNK 316
C + +C K
Sbjct: 97 CR--WPSCQK 104
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCKI 479
+PF C C + F ++ H RTHTG P F C+
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTHTGEKP-FSCRW 99
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 116 KQVHYAKLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQF--CRKAFKLKYYLTLHLRT 173
+++HY D C K + K H++ H+ +KP++C + C F LT H R
Sbjct: 13 RRIHYC---DYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK 69
Query: 174 HTGVRPMFECDICHKVL 190
HTG +P F+C +C++
Sbjct: 70 HTGAKP-FQCGVCNRSF 85
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 309 CGYVTCNK-YRLTEHVR---RTHL--KDYKVLCPICGYGCFRNAELEEHFISAHSADRFK 362
C Y C K Y + H++ RTH K YK C + R+ EL H+ A F+
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 363 CVFCEKSFARNCNLKLHIRRYHD 385
C C +SF+R+ +L LH++R+ +
Sbjct: 78 CGVCNRSFSRSDHLALHMKRHQN 100
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 4 SQEDTEKFSCSLCSYS-----VTIKRNLIMHIKRKHTDEFSILCP--ECGRGFFNEKELA 56
S D EK C Y T +L H+ R HT E C C F EL
Sbjct: 6 SGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHL-RTHTGEKPYKCTWEGCDWRFARSDELT 64
Query: 57 AHKIEIHGADPFLCIPCNKPFSKIENYRLHQRRY 90
H + GA PF C CN+ FS+ ++ LH +R+
Sbjct: 65 RHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 102 CHKV-LRTARLSEHMKQVHYAKLFDCHI--CGKTVVTEKNYKKHMQLHSDDKPFECQFCR 158
C KV +++ L H++ K + C C +H + H+ KPF+C C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 159 KAFKLKYYLTLHLRTH 174
++F +L LH++ H
Sbjct: 83 RSFSRSDHLALHMKRH 98
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 324 RRTHLKDYKVLCPICGYGCFRNAELEEHFISAHSADRFKCVF--CEKSFARNCNLKLHIR 381
RR H DY P C +++ L+ H + +KC + C+ FAR+ L H R
Sbjct: 13 RRIHYCDY----PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYR 68
Query: 382 RYHDKSDNTECPLCGKSFPSRGRLNEHL 409
+ H + +C +C +SF L H+
Sbjct: 69 K-HTGAKPFQCGVCNRSFSRSDHLALHM 95
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 252 PYCAKFLSRKEKLNRHIRTVHTDVNYKC--EICGEEFLSKTRYNRHVVTHEEKQKFEC 307
P C K ++ L H+RT + YKC E C F RH H + F+C
Sbjct: 21 PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQC 78
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Query: 153 ECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDIC 186
EC +C K F+ YYL +HLRTHTG +P ++C+ C
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKP-YKCEFC 38
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 125 DCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTH 174
+C CGK + H++ H+ +KP++C+FC A K L HL H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 23/50 (46%)
Query: 250 QCPYCAKFLSRKEKLNRHIRTVHTDVNYKCEICGEEFLSKTRYNRHVVTH 299
+C YC KF LN H+RT + YKCE C KT H+ H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 448 CPECGKAFKFKRYVTLHMRTHTGNWPTFVCKIC 480
C CGK F+ Y+ +H+RTHTG P + C+ C
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKP-YKCEFC 38
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 278 KCEICGEEFLSKTRYNRHVVTHEEKQKFECE-CGYVTCNKYRLTEHVRRTH 327
+C CG+ F S N H+ TH ++ ++CE C Y K L H+ R H
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 335 CPICGYGCFRNAELEEHFISAHSADRFKCVFCEKSFARNCNLKLHIRRYH 384
C CG N L H + +KC FCE + A+ +L+ H+ R+H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KPFEC C+KAF K L +H RTHTG +P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 445 PFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
PF C EC KAF K + +H RTHTG P+
Sbjct: 12 PFECSECQKAFNTKSNLIVHQRTHTGEKPS 41
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMF 181
K F C CG+ N H + H+D++P+ C C KAF+ + +L H H+ +P F
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP-F 74
Query: 182 ECDICHK 188
+C C K
Sbjct: 75 KCQECGK 81
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 32/110 (29%)
Query: 68 FLCIPCNKPFSKIENYRLHQRRYHLNSVNKECKICHKVLRTARLSEHMKQVHYAKLFDCH 127
F+C C + F+K N +H+R H + C ICHK R
Sbjct: 18 FICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRR------------------- 57
Query: 128 ICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAF----KLKYYLTLHLRT 173
+ + + H +HS +KPF+CQ C K F L + TLH++T
Sbjct: 58 --------QDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQT 99
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 9 EKFSCSLCSYSVTIKRNLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIEIHGADPF 68
++F C C T NL++H +R HTDE C C + F + L H+ PF
Sbjct: 16 KEFICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 69 LCIPCNKPFSKIENYRLHQ 87
C C K F + +H+
Sbjct: 75 KCQECGKGFCQSRTLAVHK 93
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 33/119 (27%)
Query: 353 ISAHSADRFKCVFCEKSFARNCNLKLHIRRYHDKSDNTECPLCGKSFPSRGRLNEHLIQV 412
+ + + F C FC + F ++ NL +H R + D+ T C +C K+F + L +H +
Sbjct: 10 LPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYT-CDICHKAFRRQDHLRDHRY-I 67
Query: 413 HPAQKHQCHICNKIVVSEXXXXXXXXXXXNSEPFHCPECGKAFKFKRYV----TLHMRT 467
H +K PF C ECGK F R + TLHM+T
Sbjct: 68 HSKEK---------------------------PFKCQECGKGFCQSRTLAVHKTLHMQT 99
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 251 CPYCAKFLSRKEKLNRHIRTVHTDVNYKCEICGEEFLSKTRYNRHVVTHEEKQKFEC-EC 309
C +C + ++ L H RT + Y C+IC + F + H H +++ F+C EC
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQEC 79
Query: 310 GYVTCNKYRLTEH 322
G C L H
Sbjct: 80 GKGFCQSRTLAVH 92
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 302 KQKFECE-CGYVTCNKYRLTEHVRRTHLKDYKVLCPICGYGCFRNAELEEHFISAHSADR 360
K++F C+ CG Y L H RTH + C IC R L +H
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIH-ERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP 73
Query: 361 FKCVFCEKSFARNCNLKLH 379
FKC C K F ++ L +H
Sbjct: 74 FKCQECGKGFCQSRTLAVH 92
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 124 FDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ C +C ++ V + ++H +HS +K + C++C K F L Y T H HTG R ++C
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGER-RYQC 81
Query: 184 DICHK 188
C K
Sbjct: 82 LACGK 86
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 34 HTDEFSILCPECGRGFFNEKELAAHKIEIHGADP 67
HT E C CG+ F N + +++H +H DP
Sbjct: 73 HTGERRYQCLACGKSFINYQFMSSHIKSVHSQDP 106
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 271 VHTDVNYKCEICGEEFLSKTRYNRHVVTHEEKQKFECE-CGYV-TCNKYRLTEHVRRTHL 328
V V Y C +C ++ T RH H ++K+ C C V +YR + T
Sbjct: 17 VDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGE 76
Query: 329 KDYKVLCPICGYGCFRNAELEEHFISAHSAD 359
+ Y+ C CG + H S HS D
Sbjct: 77 RRYQ--CLACGKSFINYQFMSSHIKSVHSQD 105
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 126 CHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTG-VRPMFECD 184
C ICGK + +H HS +KP+ C C FK K ++ H+R+H G V + C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 185 ICHK 188
C K
Sbjct: 70 SCGK 73
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 279 CEICGEEFLSKTRYNRHVVTHEEKQKFECE-CGYVTCNKYRLTEHVRRTHLKDYK-VLCP 336
CEICG+ F NRH ++H ++ + C CG K R++ HVR K +C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 337 ICGYGCFRNAELEEHFISAHSA 358
CG G R L H HS
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSG 91
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 420 CHICNKIVVSEXXXXXXXXXXXNSEPFHCPECGKAFKFKRYVTLHMRTHTGN-WPTFVCK 478
C IC KI +P+ CP CG FK K ++ H+R+H G+ ++C+
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 479 ICNATIS 485
C S
Sbjct: 70 SCGKGFS 76
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 45/128 (35%), Gaps = 39/128 (30%)
Query: 147 SDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHKVLXXXXXXXXXXXXNENL 206
S C+ C K F+ Y+L H +H+G +P
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPY-------------------------- 36
Query: 207 RPCTLCDKKLASERKLKEHIRKQHPTSVEADLIRREKYEREKVQCPYCAKFLSRKEKLNR 266
C +C + + ++ H+R H SV I C C K SR + LN
Sbjct: 37 -SCPVCGLRFKRKDRMSYHVR-SHDGSVGKPYI-----------CQSCGKGFSRPDHLNG 83
Query: 267 HIRTVHTD 274
HI+ VH+
Sbjct: 84 HIKQVHSG 91
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 247 EKVQCPYCAKFLSRKEKLNRHIRTVHTDVNYKCEICGEEFLSKTRYNRHVVTHEEK--QK 304
V C C K LNRH + + Y C +CG F K R + HV +H+ +
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP 65
Query: 305 FECE-CGYVTCNKYRLTEHVRRTH 327
+ C+ CG L H+++ H
Sbjct: 66 YICQSCGKGFSRPDHLNGHIKQVH 89
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 93 NSVNKECKICHKVLRTA-RLSEHMKQVHYAKLFDCHICGKTVVTEKNYKKHMQLH--SDD 149
S C+IC K+ R L+ H K + C +CG + H++ H S
Sbjct: 4 GSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVG 63
Query: 150 KPFECQFCRKAFKLKYYLTLHLR-THTG 176
KP+ CQ C K F +L H++ H+G
Sbjct: 64 KPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 35 TDEFSILCPECGRGFFNEKELAAHKIEIHGADPFLCIPCNKPFSKIENYRLHQRRYHLNS 94
+ + C CG+ F + L HK+ G P+ C C F + + H R H S
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRS-HDGS 61
Query: 95 VNKE--CKICHKVL-RTARLSEHMKQVHYA 121
V K C+ C K R L+ H+KQVH
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Query: 4 SQEDTEKFSCSLCSYSVTIKRNLIMHIKR---KHTDEFSILCPECGRGFFNEKELAAHKI 60
+ +C +C I R+ + H+ R H+ E CP CG F + ++ H
Sbjct: 1 GSSGSSGVACEICG---KIFRD-VYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVR 56
Query: 61 EIHG--ADPFLCIPCNKPFSKIENYRLHQRRYH 91
G P++C C K FS+ ++ H ++ H
Sbjct: 57 SHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 129 CGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHT 175
C + +H+++H+ KPF+C+ C + F +LT H+RTHT
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 445 PFHCP--ECGKAFKFKRYVTLHMRTHTGNWPTFVCKICNATIS 485
P+ CP C + F +T H+R HTG P F C+IC S
Sbjct: 19 PYACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFS 60
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 150 KPFEC--QFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHK 188
+P+ C + C + F LT H+R HTG +P F+C IC +
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMR 57
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 251 CPY--CAKFLSRKEKLNRHIRTVHTDVNYKCEICGEEFLSKTRYNRHVVTH 299
CP C + SR ++L RHIR ++C IC F H+ TH
Sbjct: 22 CPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 18/30 (60%), Positives = 21/30 (70%)
Query: 147 SDDKPFECQFCRKAFKLKYYLTLHLRTHTG 176
S +KP+EC C KAF LK L +H RTHTG
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTG 35
Score = 38.5 bits (88), Expect = 0.008, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTG 470
+P+ C +CGKAF K + +H RTHTG
Sbjct: 9 KPYECTDCGKAFGLKSQLIIHQRTHTG 35
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP+EC+ C KAF K +L H +THTG +P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C C KAF K ++ H +THTG P+
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKPS 41
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 57/144 (39%), Gaps = 12/144 (8%)
Query: 44 ECGRGFFNEKELAAHKIEIHGADPFLCI--PCNKPFSKIENYRLHQRRYHLNSVNKECKI 101
+CG + +L AH + G PF C C K F+ + + H H N C
Sbjct: 19 DCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT-HTGEKNFTCDS 77
Query: 102 CHKVLR---TARLSEHMKQVHYAKL--FDCHI--CGKTVVTEKNYKKHMQLHSDDKPFEC 154
LR A + +H + H K+ + CH CGK K H H+ P+EC
Sbjct: 78 DGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYEC 137
Query: 155 --QFCRKAFKLKYYLTLHLRTHTG 176
+ C K F L L H + H G
Sbjct: 138 PHEGCDKRFSLPSRLKRHEKVHAG 161
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 63/175 (36%), Gaps = 39/175 (22%)
Query: 129 CGKTVVTEKNYKKHMQLHSDDKPFEC--QFCRKAFKLKYYLTLHLRTHTGVRPMFECDIC 186
CG + H+ H+ +KPF C + C K F ++LT H THTG + F CD
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEK-NFTCDS- 77
Query: 187 HKVLXXXXXXXXXXXXNENLRPCTLCDKKLASERKLKEHIRKQHPTSVEADLIRREKYER 246
CD + ++ +K+H + H + + E
Sbjct: 78 -----------------------DGCDLRFTTKANMKKHFNRFHNIKICVYVCHFEN--- 111
Query: 247 EKVQCPYCAKFLSRKEKLNRHIRTVHTDVNYKC--EICGEEFLSKTRYNRHVVTH 299
C K + +L H + + Y+C E C + F +R RH H
Sbjct: 112 -------CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 159
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTG 470
+P+ C ECGKAF+ K Y+ +H RTHTG
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTG 37
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 150 KPFECQFCRKAFKLKYYLTLHLRTHTG 176
KP+ C C KAF+ K YL +H RTHTG
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTG 37
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHT 175
K + C CGK +H ++H+ +KP++C C KAF L H R HT
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCKICNATIS 485
+P+ C ECGKAF + H R HTG P + C C S
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFS 53
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHKVL 190
+KP+ C C KAF L H R HTG +P ++C C K
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAF 52
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 42 CPECGRGFFNEKELAAHKIEIHGADPFLCIPCNKPFSKIENYRLHQR 88
C ECG+ F L H+ G P+ C+ C K FS+ HQR
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 361 FKCVFCEKSFARNCNLKLHIRRYHDKSDNTECPLCGKSFPSRGRLNEH 408
+ CV C K+F+R+ L H +R H +C CGK+F L H
Sbjct: 15 YGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 11 FSCSLCSYSVTIKRNLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIEIHGADP 67
+ C C + + L+ H +R HT E C ECG+ F L H+ IH + P
Sbjct: 15 YGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLINHQ-RIHTSGP 69
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KPF+C+ C KAF+ +L HLR HTG +P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+PF C ECGKAF+ ++ H+R HTG P+
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKPS 41
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTG 176
+KP+EC C+KAF K L +H RTHTG
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTG 37
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 445 PFHCPECGKAFKFKRYVTLHMRTHTG 470
P+ C EC KAF K + +H RTHTG
Sbjct: 12 PYECNECQKAFNTKSNLMVHQRTHTG 37
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 124 FDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHL-RTHTG 176
F C +C + +++ K+H + H+++KP+ C C +AF + L H + H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 361 FKCVFCEKSFARNCNLKLHIRRYHDKSDNTECPLCGKSFPSRGRLNEHLIQVHPA 415
F C C ++FAR +LK H R H C LC ++F R L H ++H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 152 FECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHKVL 190
F C+ C +AF + +L H R+HT +P + C +C++
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAF 40
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 251 CPYCAKFLSRKEKLNRHIRTVHTDVNYKCEICGEEFLSKTRYNRHV 296
C C + +R+E L RH R+ + Y C +C F + RH
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA 50
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP+EC CRKAF LT H R H+G +P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
K + C C + + N H +H+ +KP+ C C F L H R H+G +P
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDIC 186
DKP++C C+ +F+ K L H HTG +P + C+IC
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKP-YRCNIC 51
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCKICNATIS 485
+P+ C C +F++K + H HTG P + C IC A +
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFN 56
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 42 CPECGRGFFNEKELAAHKIEIHGADPFLCIPCNKPFSKIENYRLHQR 88
C C F + LA+HK G P+ C C F++ N + H R
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+ P+EC C KAF KY L H RTH G +P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 445 PFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
P+ C ECGKAF K + H RTH G P+
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAGEKPS 41
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.7 bits (86), Expect = 0.015, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 147 SDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
S +KP+ C C KAF K L +H HTGV+P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C ECGKAF FK + +H HTG P+
Sbjct: 9 KPYSCNECGKAFTFKSQLIVHKGVHTGVKPS 39
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 37.7 bits (86), Expect = 0.015, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 150 KPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
KP+ C C K F LK L +H R+HTGV+P
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 33.1 bits (74), Expect = 0.34, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C +C K F K + +H R+HTG P+
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKPS 41
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KPFEC C K+F + L H R HTG +P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 445 PFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
PF C ECGK+F + H R HTG P+
Sbjct: 12 PFECAECGKSFSISSQLATHQRIHTGEKPS 41
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP+EC C KAF ++ LT H HTG +P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C +CGKAF + +T H HTG P+
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKPS 41
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C ECGKAF K +T H R HTG P+
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKPS 41
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP+ C C KAF K LT H R HTG +P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP++CQ C KAF++ +L H H+G RP
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C CGKAF+ ++ H H+G P+
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERPS 41
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 129 CGKTVVTEKNYKKHMQLHSDDKPFECQF--CRKAFKLKYYLTLHLRTH 174
CGKT + K H + H+ +KPF C + C + F L+ H RTH
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 43 PECGRGFFNEKELAAHKIEIHGADPFLCI--PCNKPFSKIENYRLHQR 88
P CG+ +F L AH G PF C C + F++ + H+R
Sbjct: 23 PGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRR 70
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 445 PFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
P+ C ECGKAFK K + H R+HTG P+
Sbjct: 12 PYECIECGKAFKTKSSLICHRRSHTGEKPS 41
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+P+EC C KAFK K L H R+HTG +P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP+EC C KAF + L++H R H+G +P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C CGKAF ++ +++H R H+G P+
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKPS 41
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 37.0 bits (84), Expect = 0.024, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 446 FHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+ C ECGK+F+ K +TLH R HTG+ P+
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 35.8 bits (81), Expect = 0.059, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 147 SDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
S + +ECQ C K+F+ K LTLH R HTG P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGV 177
+KP+EC C KAF K L +H RTH GV
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAGV 38
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 445 PFHCPECGKAFKFKRYVTLHMRTHTG 470
P+ C ECGKAF +K + +H RTH G
Sbjct: 12 PYECNECGKAFIWKSLLIVHERTHAG 37
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C ECGK F K ++ H RTHTG P+
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKPS 41
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP+ C C K F K L+ H RTHTG +P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 124 FDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRT 173
+ C CG KKH++ H+D +P+ C +C +FK K LT H+++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 36.6 bits (83), Expect = 0.031, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C +CGKAF K + +H+R HTG+ P+
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 34.3 bits (77), Expect = 0.15, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP+ C C KAF K L +H+R HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP++C C K+F+ LT+H R HTG +P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C C K+F++ +T+H R HTG P+
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKPS 41
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP++C+ C K + K+ L +H + HTG RP
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C +CGK + K + +H + HTG P+
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERPS 41
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTG 470
+P+ C ECGK F K Y+ +H R HTG
Sbjct: 9 KPYGCNECGKDFSSKSYLIVHQRIHTG 35
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 147 SDDKPFECQFCRKAFKLKYYLTLHLRTHTG 176
S +KP+ C C K F K YL +H R HTG
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTG 35
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP+ C +C KAF L L H R HTG +P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C CGKAF + H R HTG P+
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKPS 41
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C ECGK F+ Y++ H R HTG P+
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKPS 41
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP++C C K F+ YL+ H R HTG +P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 129 CGKTVVTEKNYKKHMQLHSDDKPFEC--QFCRKAFKLKYYLTLHLRTHTGVRPMFECD 184
CG + H+ H+ +KPF C + C K F ++LT H THTG + F CD
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN-FTCD 67
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 35.8 bits (81), Expect = 0.050, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTG 470
+P+ C ECGKAF K + +H R HTG
Sbjct: 9 KPYVCNECGKAFGLKSQLIIHERIHTG 35
Score = 35.0 bits (79), Expect = 0.10, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 147 SDDKPFECQFCRKAFKLKYYLTLHLRTHTG 176
S KP+ C C KAF LK L +H R HTG
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTG 35
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP+EC+ C KAF +L H R HTG +P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 445 PFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
P+ C ECGKAF ++ H R HTG P+
Sbjct: 12 PYECKECGKAFSQTTHLIQHQRVHTGEKPS 41
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C ECGKAF+ + + +H TH+G P+
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKPS 41
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP++C C KAF+ + L +H TH+G +P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 35.8 bits (81), Expect = 0.053, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTG 470
+P+ C +CGKAF FK + +H HTG
Sbjct: 9 KPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 33.9 bits (76), Expect = 0.23, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 147 SDDKPFECQFCRKAFKLKYYLTLHLRTHTGV 177
S +KP+ C C KAF K L +H HTGV
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGV 36
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 13/116 (11%)
Query: 73 CNKPFSKIENYRLHQRRYHLNSVNKECKICH--------KVLRTA-RLSEHMKQVHYAKL 123
C++ FS + H H+ + +C+ K + +L H++ K
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 124 FDCHI--CGKTVVTEKNYKKHMQLHSDDKPFECQF--CRKAFKLKYYLTLHLRTHT 175
F C CGK +N K H + H+ +KPF+C+F C + F H+ HT
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT 146
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 48/124 (38%), Gaps = 39/124 (31%)
Query: 366 CEKSFARNCNLKLHIRRYHDKSDNT--------ECPLCGKSFPSRGRLNEHLIQVHPAQK 417
C+++F+ L H+ H ECP GKSF ++ +L H I+VH +K
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH-IRVHTGEK 89
Query: 418 HQCHICNKIVVSEXXXXXXXXXXXNSEPFHCP--ECGKAFKFKRYVTLHMRTHTGNWPTF 475
PF CP CGK F + +H RTHTG P F
Sbjct: 90 ---------------------------PFPCPFPGCGKIFARSENLKIHKRTHTGEKP-F 121
Query: 476 VCKI 479
C+
Sbjct: 122 KCEF 125
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 153 ECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDI--CHKVLXXXXXXXXXXXXNENLRP-- 208
EC K+FK KY L H+R HTG +P F C C K+ + +P
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKP-FPCPFPGCGKIFARSENLKIHKRTHTGEKPFK 122
Query: 209 CTL--CDKKLASERKLKEHI 226
C CD++ A+ K+H+
Sbjct: 123 CEFEGCDRRFANSSDRKKHM 142
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 9/124 (7%)
Query: 207 RPCTLCDKKLASERKLKEHIRKQHPTSVEADLIRREKYEREKVQCPYCAKFLSRKEKLNR 266
RP CD+ ++ +L H+ +H E + Y E CP K K KL
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQN--NHVCYWEE---CPREGKSFKAKYKLVN 80
Query: 267 HIRTVHTDVNYKCEI--CGEEFLSKTRYNRHVVTHEEKQKFECECGYVTCNKYRLTEHVR 324
HIR + + C CG+ F H TH ++ F+CE + C++ R
Sbjct: 81 HIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCE--FEGCDRRFANSSDR 138
Query: 325 RTHL 328
+ H+
Sbjct: 139 KKHM 142
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 54/148 (36%), Gaps = 42/148 (28%)
Query: 16 CSYSVTIKRNLIMHIKRKHTDE--------FSILCPECGRGFFNEKELAAHKIEIH-GAD 66
C + + L+ H+ +H + CP G+ F + +L H I +H G
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH-IRVHTGEK 89
Query: 67 PFLCI--PCNKPFSKIENYRLHQRRYHLNSVNKECKICHKVLRTARLSEHMKQVHYAKLF 124
PF C C K F++ EN ++H+R + K F
Sbjct: 90 PFPCPFPGCGKIFARSENLKIHKRTHTGE----------------------------KPF 121
Query: 125 DCHI--CGKTVVTEKNYKKHMQLHSDDK 150
C C + + KKHM +H+ DK
Sbjct: 122 KCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 13 CSLCSYSVTIKRNLIMHIKRKHTDEFSILCP--ECGRGFFNEKELAAHKIEIHGADPFLC 70
C S K L+ HI R HT E CP CG+ F + L HK G PF C
Sbjct: 65 CPREGKSFKAKYKLVNHI-RVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 71 --IPCNKPFSKIENYRLH 86
C++ F+ + + H
Sbjct: 124 EFEGCDRRFANSSDRKKH 141
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 252 PYCAKFLSRKEKLNRHIRTVHTDVNYKCEI--CGEEFLSKTRYNRHVVTH 299
P C K +R E L H RT + +KCE C F + + +H+ H
Sbjct: 96 PGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVH 145
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KPF+C C K++ + +LT H R HTG +P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+PF C ECGK++ + ++T H R HTG P+
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKPS 41
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 35.4 bits (80), Expect = 0.063, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C ECGK+F + + +H R HTG+ P+
Sbjct: 9 KPYQCKECGKSFSQRGSLAVHERLHTGSGPS 39
Score = 33.5 bits (75), Expect = 0.26, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 147 SDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
S +KP++C+ C K+F + L +H R HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 251 CPYCAKFLSRKEKLNRHIRTVHTDVNYKCEICGEEFLSKTRYNRHV 296
CP C + + K RH+R +H + C+ C F S RH+
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 334 LCPICGYGCFRNAELEEHFISAHSADRFKCVFCEKSFARNCNLKLHIRRYHDKSD 388
LCP+CG E H H+A F C +C +F + L HI + H +
Sbjct: 30 LCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN 84
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 392 CPLCGKSFPSRGRLNEHLIQVHPAQKHQCHICNKIVVSE 430
CP+CG+SF S+G HL +H AQ C C S
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSS 69
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 279 CEICGEEFLSKTRYNRHVVTHEEKQKFECE-CGYVTCNKYRLTEHVRRTH 327
C +CGE F SK RH+ Q F C+ C + LT H+ + H
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH 80
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 126 CHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHL 171
C +CG++ ++ ++H++L + F C++C F LT H+
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 147 SDDKPFECQFCRKAFKLKYYLTLHLRTHT 175
S K F C++C K FK K+ L HLR HT
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHT 33
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP+EC C K+F K L +H + HTG +P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C CGK+F K + +H + HTG P+
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKPS 41
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKP 151
K ++C ICGK+ + H Q+H+ +KP
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.0 bits (79), Expect = 0.098, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 147 SDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
S +KPF C C KAF K YL +H +TH +P
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+PF C C KAF K Y+ +H +TH P+
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEEKPS 39
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 445 PFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
P C ECGK+F F + +H R HTG P+
Sbjct: 12 PHECRECGKSFSFNSQLIVHQRIHTGENPS 41
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP EC+ C K+F L +H R HTG P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 446 FHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+ C ECGKAF K + +H R HTG P+
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKPS 41
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 152 FECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+EC C KAF K L +H R HTG +P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTG 176
KPFEC C K+F+ K L H R HTG
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTG 37
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTG 470
+PF C CGK+F+ K + H R HTG
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTG 37
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 446 FHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
F C ECGKAF K +++H + HTG P+
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPS 41
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 152 FECQFCRKAFKLKYYLTLHLRTHTGVRP 179
FEC C KAF K L++H + HTG +P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP++C C K F +L H R HTGV+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C ECGK F ++ H R HTG P+
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKPS 41
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHT 175
+KP+ C C KAF L +L HLR HT
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHT 36
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHT 469
+P+ C CGKAF ++ H+R HT
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHT 36
>pdb|1P33|A Chain A, Pteridine Reductase From Leishmania Tarentolae Complex
With Nadph And Mtx
pdb|1P33|B Chain B, Pteridine Reductase From Leishmania Tarentolae Complex
With Nadph And Mtx
pdb|1P33|C Chain C, Pteridine Reductase From Leishmania Tarentolae Complex
With Nadph And Mtx
pdb|1P33|D Chain D, Pteridine Reductase From Leishmania Tarentolae Complex
With Nadph And Mtx
Length = 289
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 54 ELAAHKIEIHGADPFLCI-PCNKPFSKIENYRLHQRRYHLNSVNKECK 100
ELA+ +I ++G P L + P + PFS E+YR Y NS +E
Sbjct: 212 ELASLQIRVNGVSPGLSVLPDDMPFSVQEDYRRKVPLYQRNSSAEEVS 259
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 34.3 bits (77), Expect = 0.15, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 445 PFHCPECGKAFKFKRYVTLHMRTHTG 470
P+ C ECGKAF K + H RTH G
Sbjct: 10 PYECSECGKAFNRKDQLISHQRTHAG 35
Score = 32.0 bits (71), Expect = 0.69, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 147 SDDKPFECQFCRKAFKLKYYLTLHLRTHTG 176
S + P+EC C KAF K L H RTH G
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAG 35
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP++C C K F +LT H R HTG +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C ECGK F ++T H R HTG P+
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKPS 41
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTG 176
+KP+EC C KAF L +H RTH+G
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSG 37
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 445 PFHCPECGKAFKFKRYVTLHMRTHTG 470
P+ C ECGKAF + +H RTH+G
Sbjct: 12 PYECSECGKAFIRNSQLIVHQRTHSG 37
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 445 PFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
PF C ECGK F K + +H + HTG P+
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTGERPS 41
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+ PF C C K F K L +H + HTG RP
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP+EC C K+F K L +H R HTG P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C +CGK+F K + +H R HTG P+
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENPS 41
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C ECGKAF T H R HTG P+
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRPS 41
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP++C C KAF T H R HTG RP
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C ECGKAF + H R HTG P+
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKPS 41
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 150 KPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
KP++C C KAF L H R HTG +P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP++C C KAF +L H R HTG RP
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C ECGKAF ++ H R HTG P+
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRPS 41
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 445 PFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
P++C ECGKAF + H R HTG P+
Sbjct: 12 PYNCEECGKAFIHDSQLQEHQRIHTGEKPS 41
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP+ C+ C KAF L H R HTG +P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTH 174
+ F C+ CGKT +H + H +P C C K F+ + + HL+ H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 148 DDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMF--ECDIC 186
++PF C FC K ++ L+ H R H G RP EC C
Sbjct: 1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKC 41
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 361 FKCVFCEKSFARNCNLKLHIRRYHDKSDNTECPLCGKSFPSRGRLNEHL 409
F C FC K++ L H RR H CP CGK F + +N HL
Sbjct: 5 FFCNFCGKTYRDASGLSRH-RRAHLGYRPRSCPECGKCFRDQSEVNRHL 52
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 19/49 (38%)
Query: 420 CHICNKIVVSEXXXXXXXXXXXNSEPFHCPECGKAFKFKRYVTLHMRTH 468
C+ C K P CPECGK F+ + V H++ H
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 251 CPYCAKFLSRKEKLNRHIRTVHTDVNYKCEICGEEFLSKTRYNRHVVTHEEK 302
C +C K L+RH R C CG+ F ++ NRH+ H+ K
Sbjct: 7 CNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK 58
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 11 FSCSLCSYSVTIKRNLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIEIHGADP 67
F C+ C + L H +R H CPECG+ F ++ E+ H +++H P
Sbjct: 5 FFCNFCGKTYRDASGLSRH-RRAHLGYRPRSCPECGKCFRDQSEVNRH-LKVHQNKP 59
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KPF+C+ C K F +L H R HTG +P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 445 PFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
PF C ECGK F ++ H R HTG P+
Sbjct: 12 PFQCEECGKRFTQNSHLHSHQRVHTGEKPS 41
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Transcriptional Repressor Ctcf
Length = 86
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 11 FSCSLCSYSVTIKRNLIMHIKRKHTDEF---SILCPECGRGFFNEKELAAHKIEIHGAD 66
++CS C + K+ L MH KR H F + +C +CG+ F +A H G D
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPD 74
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 361 FKCVFCEKSFARNCNLKLHIRRYHDKS---DNTECPLCGKSFPSRGRLNEHL 409
+ C C+K+F + L +H +RYHD + C CGK+F R + H
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 144 QLHSDDKPFECQFCRKAFKLKYYLTLHLRTH---TGVRPMFECDICHKVL 190
+ H+ +KP+ C C K F+ K L +H + + V F C C K
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTF 57
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C ECGKAF + H R HTG P+
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKPS 41
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP++C C KAF L H R HTG +P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 33.1 bits (74), Expect = 0.37, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 147 SDDKPFECQFCRKAFKLKYYLTLHLRTHTG 176
S +KP+ CQ C KAF L++H R HTG
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTG 35
Score = 32.3 bits (72), Expect = 0.55, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTG 470
+P+ C ECGKAF +++H R HTG
Sbjct: 9 KPYVCQECGKAFTQSSCLSIHRRVHTG 35
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KPF+C C KAF L H R HTG +P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+PF C +CGKAF + H R HTG P+
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKPS 41
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVR 178
+KP++C C KAF K L +H ++HTG R
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTG 470
+P+ C +CGKAF K + +H ++HTG
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTG 37
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP++C C KAF+ LT H HTG +P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C ECGKAF+ +T H HTG P+
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKPS 41
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Query: 26 LIMHIKRKHTDEFSILCP--ECGRGFFNEKELAAHKIEIHGADPFLCI--PCNKPFSKIE 81
L++H++R HT E C C + + + L H G P++C C+K FS
Sbjct: 55 LVVHMRR-HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNAS 113
Query: 82 NYRLHQRRYHLNSVNKECKI---CHKVLRTARLSEHMKQVH 119
+ HQ R H N CK+ + + L +H+K VH
Sbjct: 114 DRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 19/137 (13%)
Query: 145 LHSDDKPFECQFCR-----KAFKLKYYLTLHLRTHTGVRP---MFECDICHKVLXXXXXX 196
+H + K F C + + FK +Y L +H+R HTG +P FE C K
Sbjct: 28 IHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFE--GCRKSYSRLENL 85
Query: 197 XXXXXXNENLRPCTLCDKKLASERKLKEHIRKQHPTSVEADLIRREKYEREKV-QCPYCA 255
+ +P +C+ + S+ R +H ++ E+ V + P C
Sbjct: 86 KTHLRSHTGEKP-YMCEHEGCSKAFSNASDRAKHQNRTHSN-------EKPYVCKLPGCT 137
Query: 256 KFLSRKEKLNRHIRTVH 272
K + L +H++TVH
Sbjct: 138 KRYTDPSSLRKHVKTVH 154
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Query: 73 CNKPFSKIENYRLHQRRYHLNSVNKE----CKICHKVLRTAR----LSEHMKQVHYAKLF 124
C++ F E H H++ KE C + LR + L HM++ K
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 125 DCHI--CGKTVVTEKNYKKHMQLHSDDKPFECQF--CRKAFKLKYYLTLHL-RTHTGVRP 179
C C K+ +N K H++ H+ +KP+ C+ C KAF H RTH+ +P
Sbjct: 69 KCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP 128
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 147 SDDKPFECQFCRKAFKLKYYLTLHLRTHTG 176
S KP++C C A +K L +HLR HTG
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTG 34
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 442 NSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
+ +P+ CP+C A K + +H+R HTG
Sbjct: 6 SGKPYKCPQCSYASAIKANLNVHLRKHTG 34
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 4 SQEDTEKFSCSLCSYSVTIKRNLIMHIKRKHTDE 37
S + + C CSY+ IK NL +H+ RKHT E
Sbjct: 3 SGSSGKPYKCPQCSYASAIKANLNVHL-RKHTGE 35
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 32.7 bits (73), Expect = 0.47, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 448 CPECGKAFKFKRYVTLHMRTHTG 470
C CGKAF FK + +H R HTG
Sbjct: 13 CNNCGKAFSFKSQLIIHQRIHTG 35
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 147 SDDKPFECQFCRKAFKLKYYLTLHLRTHTG 176
S +K EC C KAF K L +H R HTG
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTG 35
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C ECGKAF +T H HTG P+
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKPS 41
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 150 KPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
KP+ C C KAF + LT H HTG +P
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 32.7 bits (73), Expect = 0.49, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGN 471
+P+ CP CG FK K ++ H+R+H G+
Sbjct: 9 KPYSCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 147 SDDKPFECQFCRKAFKLKYYLTLHLRTHTG 176
S +KP+ C C FK K ++ H+R+H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 277 YKCEICGEEFLSKTRYNRHVVTHEEKQ 303
+KC+ICG+ F ++R NRH + H ++
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEK 39
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 391 ECPLCGKSFPSRGRLNEHLIQVHPAQK 417
+C +CGKSF R RLN H + VH A+K
Sbjct: 14 KCDICGKSFCGRSRLNRHSM-VHTAEK 39
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+PF C ECGK F + + +H + HTG P+
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKPS 41
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KPF+C C K F + L +H + HTG +P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 147 SDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
S +K EC CRK F L +H R HTG P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 448 CPECGKAFKFKRYVTLHMRTHTGNWPT 474
C EC K F F + +H R HTG P+
Sbjct: 13 CSECRKTFSFHSQLVIHQRIHTGENPS 39
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P++C ECGK+F++ + H R H+G P+
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKPS 41
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP+ C+ C K+F+ L H R H+G +P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 446 FHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+ C ECGKAF K +++H R H G P+
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKPS 41
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 152 FECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+EC C KAF K L++H R H G +P
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 111 LSEHMKQVH-YAKLFDCH--ICGKTVVTEKNYKKHMQLHSDDKPFECQF 156
L+ H K H + K F C CGK+ +K+ K+HM+LHSD + + C+F
Sbjct: 25 LNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 73
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 30/93 (32%)
Query: 393 PLCGKSFPSRGRLNEHLIQVHPAQKHQCHICNKIVVSEXXXXXXXXXXXNSEPFHCPE-- 450
P CG+ F +R LN H H QK F CPE
Sbjct: 13 PGCGRIFSNRQYLNHHKKYQHIHQK---------------------------SFSCPEPA 45
Query: 451 CGKAFKFKRYVTLHMRTHTGNWPTFVCKICNAT 483
CGK+F FK+++ HM+ H+ + ++C+ +
Sbjct: 46 CGKSFNFKKHLKEHMKLHS-DTRDYICEFSGPS 77
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP++C C K F +L H R HTG +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C ECGK F ++ H R HTG P+
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKPS 41
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 150 KPFECQFCRKAFKLKYYLTLHLRTHTGVR 178
KP+EC+ CRK F +L H R HTG R
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C ECGK+F K ++ H R HTG P+
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKPS 41
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP+ C C K+F K +L H R HTG +P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 325 RTHLKDYKVLCPICGYGCFRNAELEEHFISAHSAD--RFKCVFCEKSFARNCNLKLHIRR 382
RTH + C IC ++ ++ H + H+ + +F C C+ AR +L +H+R+
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 383 YHDKSD 388
H S
Sbjct: 68 QHSYSG 73
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 172 RTHTGVRPMFECDICHKVLXXXXXXXX--XXXXNENLRP--CTLCDKKLASERKLKEHIR 227
RTH+G +P +EC ICH EN+ C CD +A + L H+R
Sbjct: 8 RTHSGEKP-YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
Query: 228 KQHPTS 233
KQH S
Sbjct: 67 KQHSYS 72
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 12/65 (18%)
Query: 209 CTLCDKKLASERKLKEHIRKQHPTSVEADLIRREKYEREKVQCPYCAKFLSRKEKLNRHI 268
C +C + +K HI ++H +V K CP+C ++RK L H+
Sbjct: 18 CYICHARFTQSGTMKMHILQKHTENVA------------KFHCPHCDTVIARKSDLGVHL 65
Query: 269 RTVHT 273
R H+
Sbjct: 66 RKQHS 70
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 146 HSDDKPFECQFCRKAFKLKYYLTLH-LRTHTGVRPMFECDICHKVL 190
HS +KP+EC C F + +H L+ HT F C C V+
Sbjct: 10 HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVI 55
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.66, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KPF C C K+F+ + L H HTG +P
Sbjct: 10 EKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 28.9 bits (63), Expect = 6.9, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+PF C C K+F+ + + H HTG P+
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEKPS 41
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 150 KPFECQFCRKAFKLKYYLTLHLRTHTG 176
KPF+C+ C++ F +L H RTHTG
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTG 27
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C ECGKAF + + H + HTG P+
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKPS 41
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP+ C C KAF + L H + HTG +P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 150 KPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
KP++C C K+F Y LT H THT +P
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHT 469
+P+ C ECGK+F +T H THT
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHT 36
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTG 470
+P+ C +CGK+F +K + +H + HTG
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTG 37
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVR 178
+KP++C C K+F K L +H + HTG R
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KPF+C+ C K F L H R HTG +P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 445 PFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
PF C ECGK F + H R HTG P+
Sbjct: 12 PFKCEECGKRFTQNSQLHSHQRVHTGEKPS 41
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTG 470
+P+ C ECGKAF+ + +T H HTG
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTG 37
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTG 176
+KP++C C KAF+ + LT H HTG
Sbjct: 10 EKPYKCYECGKAFRTRSNLTTHQVIHTG 37
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 361 FKCVFCEKSFARNCNLKLHIRRYHDK 386
++C +CEK FA + NLK HI+ H K
Sbjct: 3 YQCQYCEKRFADSSNLKTHIKTKHSK 28
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 150 KPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
K F+C C+K F LT+H R HTG +P
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 446 FHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
F C EC K F +T+H R HTG P+
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKPS 41
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGN 471
+P C ECGKAF +K + +H RTH +
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQRTHVDD 38
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 335 CPICGYGCFRNAELEEH---FISAHSADRFKCVFCEKSFARNCNLKLHIRRYH 384
C ICG+ C + A L H +A RF C FC K F + ++ H + H
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 29.3 bits (64), Expect = 5.4, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 11 FSCSLCSYSVTIKRNLIMHIKRKHTDEFSIL---CPECGRGFFNEKELAAHKIEIHGA 65
C +C ++ K +L H +RKH + + L C CG+ F +AAH+ + H A
Sbjct: 8 LQCEICGFTCRQKASLNWH-QRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPA 64
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 448 CPECGKAFKFKRYVTLHMRTHTGNWPT 474
C ECG+ F K ++ H R HTG P+
Sbjct: 15 CHECGRGFTLKSHLNQHQRIHTGEKPS 41
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 150 KPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
K +C C + F LK +L H R HTG +P
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 352 FISAHSADRFKCVFCEKSFARNCNLKLHIRRYHDKSDNTE-CPLCGKSFPSRGRLNEHLI 410
+++ + +F C C F+ + +LK HIR +++T+ CP+C K F S +H+
Sbjct: 66 LLASKAISQFVCPLCLMPFSSSVSLKQHIRY----TEHTKVCPVCKKEFTSTDSALDHVC 121
Query: 411 QVH 413
+ H
Sbjct: 122 KKH 124
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 251 CPYCAKFLSRKEKLNRHIR-TVHTDVNYKCEICGEEFLSKTRYNRHV 296
CP C S L +HIR T HT V C +C +EF S HV
Sbjct: 77 CPLCLMPFSSSVSLKQHIRYTEHTKV---CPVCKKEFTSTDSALDHV 120
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTG 470
+P+ C ECGK +K + + H R HTG
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTG 37
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTG 176
+KP++C C K +K + L H R HTG
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTG 37
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 150 KPFECQFCRKAFKLKYYLTLHLRTHTG 176
+P+ C C K F LK+ + H R HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 445 PFHCPECGKAFKFKRYVTLHMRTHTG 470
P+ C CGK F K + H R HTG
Sbjct: 3 PYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 445 PFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
PF C ECGK F H R+H+G P+
Sbjct: 12 PFKCEECGKGFYTNSQCYSHQRSHSGEKPS 41
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KPF+C+ C K F H R+H+G +P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 445 PFHCPECGKAFKFKRYVTLHMRTHTG 470
P+ C ECGKAF K + H R HTG
Sbjct: 10 PYVCTECGKAFIRKSHFITHERIHTG 35
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 147 SDDKPFECQFCRKAFKLKYYLTLHLRTHTG 176
S +KP+ C C KAF K + H R HTG
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTG 35
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 445 PFHCPECGKAFKFKRYVTLHMRTHTG 470
P+ C ECGK F K + H +TH+G
Sbjct: 12 PYECCECGKVFSRKDQLVSHQKTHSG 37
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 445 PFHCPECGKAFKFKRYVTLHMRTHT 469
PF C ECGK F + ++ H+R H+
Sbjct: 12 PFKCNECGKGFGRRSHLAGHLRLHS 36
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHT 175
++PF+C C K F + +L HLR H+
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHS 36
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP+ C+ C F+ L HLR HTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C CG F+ + + H+R HTG+ P+
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 445 PFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
P C ECGK+F ++ H R HTG P+
Sbjct: 12 PHKCNECGKSFIQSAHLIQHQRIHTGEKPS 41
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
++P +C C K+F +L H R HTG +P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C ECGKAF + + H + HT P+
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKPS 41
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 150 KPFECQFCRKAFKLKYYLTLHLRTHTG 176
KP +C C KAF L H+R HTG
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTG 27
>pdb|3PY7|A Chain A, Crystal Structure Of Full-length Bovine Papillomavirus
Oncoprotein E6 In Complex With Ld1 Motif Of Paxillin At
2.3a Resolution
Length = 523
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 209 CTLCDKK-LASERKLKEHIRKQHPTSVEADLIRREKYEREKVQCPYCAKFLSRKEKLNRH 267
CT+C + LA+ER+L + + T EA+L+ + +R ++C YC L++ EK +RH
Sbjct: 436 CTICLENCLATERRLWQGVPV---TGEEAELLHGKTLDRLCIRCCYCGGKLTKNEK-HRH 491
Query: 268 I 268
+
Sbjct: 492 V 492
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C ECGK F+ ++ H HTG P+
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEKPS 41
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP++C C K F+ +L H HTG +P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C ECGK F +R + H HTG P+
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKPS 41
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 251 CPYCAKFLSRKEKLNRHIRTVHT-DVNYKCEI 281
C C K SR + LN HI+ VHT + +KC++
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 147 SDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
S KP C C K F+ L+ H R H+G +P
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P C ECGK F+ ++ H R H+G P+
Sbjct: 9 KPLVCNECGKTFRQSSCLSKHQRIHSGEKPS 39
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP++C C K F +L H HTG +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C ECGK F ++ H HTG P+
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPS 41
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
++P+ C C KAF + L H + HTG +P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 445 PFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
P+ C CGKAF + + H + HTG P+
Sbjct: 12 PYICTVCGKAFTDRSNLIKHQKIHTGEKPS 41
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTG 176
+KP++C+ C K + + L +H R H G
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMG 37
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTG 470
+P+ C +CGK + + + +H R H G
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMG 37
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 445 PFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
PF C ECGK F +++ H H G P+
Sbjct: 12 PFKCNECGKTFSHSAHLSKHQLIHAGENPS 41
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP++C C K F +L H HTG +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C ECGK F ++ H HTG P+
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKPS 41
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 123 LFDCHI--CGKTVVTEKNYKKHMQLHSDDKPFEC--QFCRKAFKLKYYLTLHLRTHTG 176
++ CH CGK K H H+ P+EC + C K F L L H + H G
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 123 LFDCHI--CGKTVVTEKNYKKHMQLHSDDKPFEC--QFCRKAFKLKYYLTLHLRTHTG 176
++ CH CGK K H H+ P+EC + C K F L L H + H G
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 124 FDCHICGKTVVTEKNYKKHMQLHSDDK 150
C CGK T N K+H+++HS +K
Sbjct: 3 LKCRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2GQJ|A Chain A, Solution Structure Of The Two Zf-C2h2 Like
Domains(493-575) Of Human Zinc Finger Protein Kiaa1196
Length = 98
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 359 DRFKCVFCEKSFARNCNLKLHIRRYHD-KSDNTECPLCGKSFPSRG 403
D KC C K F L H H K + E G+S PS G
Sbjct: 53 DALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDAEASEGGESGPSSG 98
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 133 VVTEK---NYKKHMQL-HSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
VVT K KKHM++ +CQ CRK FK K L H +P
Sbjct: 32 VVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 446 FHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+ C ECGK F ++ H + HTG P+
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKPS 41
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+K ++C C K F +L H R HTG +P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+P+ C ECGK F ++ H HTG P+
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPS 41
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 150 KPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
KP++C C K F +L H HTG +P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 153 ECQFCRKAFKLKYYLTLHLRTHTG 176
EC K+FK KY L H+R HTG
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTG 87
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 4 SQEDTEKFSCSLCSYSVTIKRNLIMHIKRKHTDE 37
S + F CSLC Y+ K NL H+ R T++
Sbjct: 3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.137 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,884,656
Number of Sequences: 62578
Number of extensions: 540328
Number of successful extensions: 3201
Number of sequences better than 100.0: 189
Number of HSP's better than 100.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1617
Number of HSP's gapped (non-prelim): 1377
length of query: 488
length of database: 14,973,337
effective HSP length: 103
effective length of query: 385
effective length of database: 8,527,803
effective search space: 3283204155
effective search space used: 3283204155
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)