RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16834
(488 letters)
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 35.8 bits (82), Expect = 0.042
Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 12/115 (10%)
Query: 366 CEKSFARNCNLKLHIRRYHDKSDNTECPL-CGKSF------PSRGRLNEHLIQVHPAQKH 418
C K F+RN LK HI + S E L F L ++ + +K
Sbjct: 329 CGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKD-LKNDKKS 387
Query: 419 QC--HICNKIVVSEKTLKKHLLLHTNSEP--FHCPECGKAFKFKRYVTLHMRTHT 469
+ + C + + L H++ H + P P C K+F + H + HT
Sbjct: 388 ETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHT 442
Score = 34.7 bits (79), Expect = 0.12
Identities = 31/170 (18%), Positives = 46/170 (27%), Gaps = 16/170 (9%)
Query: 67 PFLCIPCNKPFSKIENYRLHQRRYHLNSVNKECKICHKVLRTARLSEHM-----KQVHYA 121
P CN FS+ H R + + + + C L S + +H +
Sbjct: 289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTS 348
Query: 122 KLFDCHI---CGKTVVTEKNYKKHMQLH-----SDDKPFEC--QFCRKAFKLKYYLTLHL 171
N + L +DK E C + FK L+LH+
Sbjct: 349 ISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHI 408
Query: 172 RTHTGVRPM-FECDICHKVLKTKSKKSSGISKNENLRPCTLCDKKLASER 220
TH RP + C K + N P K
Sbjct: 409 ITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKSFRRD 458
Score = 29.3 bits (65), Expect = 5.8
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 418 HQCHICNKIVVSEKTLKKHLLLHTNSEPFHCPECGKAFKFKRYVTL--HMRTHTGN 471
C C + L +H+ HT +P C G F R + L H+RTH N
Sbjct: 34 DSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNN 89
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 30.4 bits (69), Expect = 0.100
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 433 LKKHLLLHTNSEPFHCPECGKAFK 456
L++H+ HT +P+ CP CGK+F
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSFS 25
Score = 29.7 bits (67), Expect = 0.23
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 138 NYKKHMQLHSDDKPFECQFCRKAFK 162
N ++HM+ H+ +KP++C C K+F
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFS 25
Score = 25.0 bits (55), Expect = 9.1
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 166 YLTLHLRTHTGVRPMFECDICHKVLKT 192
L H+RTHTG +P ++C +C K +
Sbjct: 1 NLRRHMRTHTGEKP-YKCPVCGKSFSS 26
Score = 25.0 bits (55), Expect = 9.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 264 LNRHIRTVHTDVNYKCEICGEEFLS 288
L RH+RT + YKC +CG+ F S
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSFSS 26
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 32.2 bits (73), Expect = 0.23
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 361 FKCVFCEKSFARNCNLKLHIRRYHDKSDNTECPLCGKSFPSRGRLNEHLIQVH 413
+ C C F+ + +LK HIR + CP+CGK F + +H+ + H
Sbjct: 74 YVCPLCLMPFSSSVSLKQHIRY---TEHSKVCPVCGKEFRNTDSTLDHVCKKH 123
Score = 27.9 bits (62), Expect = 6.6
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 251 CPYCAKFLSRKEKLNRHIRTVHTDVNYKCEICGEEFLSKTRYNRHV 296
CP C S L +HIR +T+ + C +CG+EF + HV
Sbjct: 76 CPLCLMPFSSSVSLKQHIR--YTEHSKVCPVCGKEFRNTDSTLDHV 119
>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 493
Score = 31.9 bits (72), Expect = 0.84
Identities = 39/167 (23%), Positives = 52/167 (31%), Gaps = 32/167 (19%)
Query: 2 EHSQEDTE---KFSCSLCSYSVTIK--RNLIMHIKRKHTDEFSILCPECGRGFFNE---- 52
E +++ E F C + L H K +H C + F+NE
Sbjct: 140 EDVRDEMEDLLSFKCPKSKCHRRCGSLKELKKHYKAQHGFVLCSECIGNKKDFWNEIRLF 199
Query: 53 --KELAAHKIEIHGADPF----LCIPCNKPFSKIENYRLHQRRYHLNSVNKECKICHKVL 106
L HK + F LCI C F + R H R H + C IC V
Sbjct: 200 RSSTLRDHKNGGLEEEGFKGHPLCIFCKIYFYDDDELRRHCRLRH-----EACHICDMVG 254
Query: 107 RTA--------RLSEHMKQVHYAKLFDCHICGKTVVTEKNYKKHMQL 145
L H + HY F GK V + H +L
Sbjct: 255 PIRYQYFKSYEDLEAHFRNAHYCCTFQTCRVGKCYV----FPYHTEL 297
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 31.6 bits (71), Expect = 1.0
Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 27/95 (28%)
Query: 100 KICHKVLRTARLSEHMKQVHYAKLFDCHI--CGKTVVTEKNYKKHMQLH----------- 146
K+ H R M +V K + C + C K + K HM LH
Sbjct: 326 KLAHGGERNIDTPSRMLKVKDGKPYKCPVEGCNKKYKNQNGLKYHM-LHGHQNQKLHENP 384
Query: 147 ---------SDDKPFECQFCRKAFK----LKYYLT 168
+ DKP+ C+ C K +K LKY+
Sbjct: 385 SPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK 419
Score = 29.7 bits (66), Expect = 3.7
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 14/97 (14%)
Query: 138 NYKKHMQLHSDDKPFECQF--CRKAFKLKYYLTLHLRTHTGVRPMFECDICHKVLKTKSK 195
+ M D KP++C C K +K + L H M K+ + S
Sbjct: 336 DTPSRMLKVKDGKPYKCPVEGCNKKYKNQNGLKYH---------MLHGHQNQKLHENPSP 386
Query: 196 KSSGISKNENLRP--CTLCDKKLASERKLKEHIRKQH 230
+ I ++ +P C +CDK+ + LK H + H
Sbjct: 387 EKMNIFSAKD-KPYRCEVCDKRYKNLNGLKYHRKHSH 422
Score = 28.5 bits (63), Expect = 8.1
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 12/80 (15%)
Query: 392 CPL--CGKSFPSRGRLNEHLIQVHPAQKHQCHICNKIVVSEKTLKKHLLLHTNSEPFHCP 449
CP+ C K + ++ L H++ H N+ + + +K + +P+ C
Sbjct: 352 CPVEGCNKKYKNQNGLKYHMLHGH---------QNQKLHENPSPEKMNIFSAKDKPYRCE 402
Query: 450 ECGKAFKFKRYVTLHMRTHT 469
C K +K + H R H+
Sbjct: 403 VCDKRYKNLNGLKYH-RKHS 421
Score = 28.5 bits (63), Expect = 9.8
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 361 FKCVFCEKSFARNCNLKLHIRRYHD 385
++C C+K + LK H + HD
Sbjct: 399 YRCEVCDKRYKNLNGLKYHRKHSHD 423
>gnl|CDD|225840 COG3303, NrfA, Formate-dependent nitrite reductase, periplasmic
cytochrome c552 subunit [Inorganic ion transport and
metabolism].
Length = 501
Score = 31.0 bits (70), Expect = 1.7
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 62 IHGADPFLCIPCNKPFSKIEN---YRLHQRRYHLNSVNKECKICHK 104
+HG + CI C+ P + Y H+ ++ C CH
Sbjct: 293 VHGKNGVTCIDCHMPKVQNAEGKLYTDHKIGNPFDNFASTCANCHT 338
>gnl|CDD|177300 PHA00732, PHA00732, hypothetical protein.
Length = 79
Score = 28.2 bits (63), Expect = 1.9
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 361 FKCVFCEKSFARNCNLKLHIRRYHDKSDNTECPLCGKSFPSRGRLNEHL 409
FKC C + LK H RR H T+CP+C KS+ RLN+H
Sbjct: 2 FKCPICGFTTVTLFALKQHARRNHTL---TKCPVCNKSYR---RLNQHF 44
Score = 27.8 bits (62), Expect = 3.1
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 305 FECE-CGYVTCNKYRLTEHVRRTHLKDYKVLCPICGYGCFRNAELEEHFISAHSADRFKC 363
F+C CG+ T + L +H RR H CP+C L +HF S + +
Sbjct: 2 FKCPICGFTTVTLFALKQHARRNHTLTK---CPVCN---KSYRRLNQHFYSQYDIEHLIY 55
Query: 364 VFCEKSFARNCNLKLHIRR 382
+ ++ +++L I+R
Sbjct: 56 CYLFSTYKLPYHVRLAIKR 74
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 26.3 bits (58), Expect = 2.7
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 446 FHCPECGKAFKFKRYVTLHMRTH 468
+ CPECGK FK K + HMRTH
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.9 bits (57), Expect = 3.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 277 YKCEICGEEFLSKTRYNRHVVTH 299
Y+C CG+ F SK+ H+ TH
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.1 bits (55), Expect = 7.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 152 FECQFCRKAFKLKYYLTLHLRTH 174
+ C C K FK K L H+RTH
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
>gnl|CDD|222704 pfam14353, CpXC, CpXC protein. This presumed domain is
functionally uncharacterized. This domain is found in
bacteria and archaea, and is typically between 122 and
134 amino acids in length. It contains four conserved
cysteines forming two CpXC motifs.
Length = 128
Score = 28.9 bits (65), Expect = 3.2
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 8/50 (16%)
Query: 447 HCPECGKAFKFKRYVTLHMRTH--------TGNWPTFVCKICNATISSEY 488
CP CG F+ + + +++ G TF C C +Y
Sbjct: 3 TCPSCGHEFEAEVWTSVNADEDPELREAILDGTLFTFTCPSCGHEFRLDY 52
>gnl|CDD|216902 pfam02146, SIR2, Sir2 family. This region is characteristic of
Silent information regulator 2 (Sir2) proteins, or
sirtuins. These are protein deacetylases that depend on
nicotine adenine dinucleotide (NAD). They are found in
many subcellular locations, including the nucleus,
cytoplasm and mitochondria. Eukaryotic forms play in
important role in the regulation of transcriptional
repression. Moreover, they are involved in microtubule
organisation and DNA damage repair processes.
Length = 177
Score = 28.7 bits (65), Expect = 4.6
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 350 EHFISAH-SADRFKCVFCEKSFARNCNLKLHIRRYHDKSDNTECPLCG 396
+ + H S + +CV C K + + D + +C CG
Sbjct: 93 KKVVELHGSFAKARCVSCHKKYTGE-----TLPERIDAAKVPKCDKCG 135
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys. The
C2H2 zinc finger is composed of two short beta strands
followed by an alpha helix. The amino terminal part of
the helix binds the major groove in DNA binding zinc
fingers. The accepted consensus binding sequence for Sp1
is usually defined by the asymmetric hexanucleotide core
GGGCGG but this sequence does not include, among others,
the GAG (=CTC) repeat that constitutes a high-affinity
site for Sp1 binding to the wt1 promoter.
Length = 22
Score = 25.4 bits (56), Expect = 5.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 153 ECQFCRKAFKLKYYLTLHLRTH 174
+C C K+F K L HLRTH
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 25.4 bits (56), Expect = 5.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 448 CPECGKAFKFKRYVTLHMRTH 468
CP+CGK+F K + H+RTH
Sbjct: 2 CPDCGKSFSRKSNLKRHLRTH 22
>gnl|CDD|227399 COG5067, DBF4, Protein kinase essential for the initiation of DNA
replication [DNA replication, recombination, and repair
/ Cell division and chromosome partitioning].
Length = 468
Score = 29.1 bits (65), Expect = 6.4
Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 11/98 (11%)
Query: 185 ICHKVLKTKSKKSSGISKNENLRP----------CTLCDKKLASERKLKEHIRKQHPTSV 234
I TK + + I++ N P CTL + + + +
Sbjct: 347 ILLNETDTKEQPLTSIAEESNKYPQRKEAAATPLCTLKTRLIVDRKLGVKQTNGAPSKET 406
Query: 235 EADLIRREKYEREKVQCPYCAKFLSRKEKLNRHIRTVH 272
D +K ++E + YC + E L +HI +
Sbjct: 407 GKDSAVHQKVKKETKK-GYCENCREKYESLEQHIVSEK 443
>gnl|CDD|165133 PHA02768, PHA02768, hypothetical protein; Provisional.
Length = 55
Score = 26.2 bits (57), Expect = 6.8
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 446 FHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCK 478
+ CP CG+ + ++ + H+R H N CK
Sbjct: 6 YECPICGEIYIKRKSMITHLRKHNTNLKLSNCK 38
>gnl|CDD|215056 PLN00104, PLN00104, MYST -like histone acetyltransferase;
Provisional.
Length = 450
Score = 28.6 bits (64), Expect = 8.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 251 CPYCAKFLSRKEKLNRHIRT 270
C +C KF+ RKE+L RH++
Sbjct: 201 CEFCLKFMKRKEQLQRHMKK 220
>gnl|CDD|234777 PRK00481, PRK00481, NAD-dependent deacetylase; Provisional.
Length = 242
Score = 28.2 bits (64), Expect = 9.2
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 10/49 (20%)
Query: 60 IEIHGA-DPFLCIPCNKPFSKIENYRLHQRRYHLNSVNKECKICHKVLR 107
IE+HG+ C C + + +L C C +LR
Sbjct: 114 IELHGSLLRARCTKCGQTYDL---------DEYLKPEPPRCPKCGGILR 153
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.136 0.442
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,209,631
Number of extensions: 2130318
Number of successful extensions: 3512
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3469
Number of HSP's successfully gapped: 139
Length of query: 488
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 387
Effective length of database: 6,457,848
Effective search space: 2499187176
Effective search space used: 2499187176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.3 bits)