RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16834
(488 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 72.9 bits (180), Expect = 3e-15
Identities = 63/181 (34%), Positives = 88/181 (48%), Gaps = 20/181 (11%)
Query: 9 EK-FSCSLCSYSVTIKRNLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIEIH-GAD 66
EK ++C C S + +L H +R HT E CPECG+ F ++K+L H+ H G
Sbjct: 19 EKPYACPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKSFSDKKDLTRHQR-THTGEK 76
Query: 67 PFLCIPCNKPFSKIENYRLHQRR------YHLNSVNKECKICHKVL-RTARLSEHMKQVH 119
P+ C C K FS+ N R HQR Y C C K + A L H + H
Sbjct: 77 PYKCPECGKSFSQRANLRAHQRTHTGEKPY-------ACPECGKSFSQLAHLRAHQR-TH 128
Query: 120 YA-KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVR 178
K + C CGK+ E N H + H+ +KP++C C K+F + L +H RTHTG +
Sbjct: 129 TGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Query: 179 P 179
Sbjct: 189 T 189
Score = 71.7 bits (177), Expect = 8e-15
Identities = 69/223 (30%), Positives = 90/223 (40%), Gaps = 51/223 (22%)
Query: 259 SRKEKLNRHIRTVHT-DVNYKCEICGEEFLSKTRYNRHVVTHEEKQKFEC-ECGYVTCNK 316
+ Y C CG+ F H TH ++ ++C ECG +K
Sbjct: 4 FGSSSSVAQAAL-EPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDK 62
Query: 317 YRLTEHVRRTHL--KDYKVLCPICGYGCFRNAELEEHFISAHSADRFKCVFCEKSFARNC 374
LT H +RTH K YK CP CG KSF++
Sbjct: 63 KDLTRH-QRTHTGEKPYK--CPECG----------------------------KSFSQRA 91
Query: 375 NLKLHIRRYHDKSDNT-----ECPLCGKSFPSRGRLNEHLIQ-VHPAQK-HQCHICNKIV 427
NL+ H +R H T CP CGKSF L H Q H +K ++C C K
Sbjct: 92 NLRAH-QRTH-----TGEKPYACPECGKSFSQLAHLRAH--QRTHTGEKPYKCPECGKSF 143
Query: 428 VSEKTLKKHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
E L H HT +P+ CPECGK+F + + +H RTHTG
Sbjct: 144 SREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 69.8 bits (172), Expect = 4e-14
Identities = 46/126 (36%), Positives = 64/126 (50%), Gaps = 14/126 (11%)
Query: 361 FKCVFCEKSFARNCNLKLHIRRYHDKSDNT-----ECPLCGKSFPSRGRLNEHLIQVHPA 415
+ C C KSF+R+ +L H +R H T +CP CGKSF + L H + H
Sbjct: 22 YACPECGKSFSRSDHLAEH-QRTH-----TGEKPYKCPECGKSFSDKKDLTRHQ-RTHTG 74
Query: 416 QK-HQCHICNKIVVSEKTLKKHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
+K ++C C K L+ H HT +P+ CPECGK+F ++ H RTHTG P
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKP- 133
Query: 475 FVCKIC 480
+ C C
Sbjct: 134 YKCPEC 139
Score = 62.1 bits (152), Expect = 2e-11
Identities = 62/209 (29%), Positives = 88/209 (42%), Gaps = 47/209 (22%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMF 181
K + C CGK+ + +H + H+ +KP++C C K+F K LT H RTHTG +P +
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP-Y 78
Query: 182 ECDICHKVLKTKSKKSSGISKNENLRPCTLCDKKLASERKLKEHIRKQHPTSVEADLIRR 241
+C C K ++ L+ H R H
Sbjct: 79 KCPECGKSFSQRA--------------------------NLRAHQRT-H---------TG 102
Query: 242 EK-YEREKVQCPYCAKFLSRKEKLNRHIRTVHTDVN-YKCEICGEEFLSKTRYNRHVVTH 299
EK Y CP C K S+ L H RT HT YKC CG+ F + + H TH
Sbjct: 103 EKPYA-----CPECGKSFSQLAHLRAHQRT-HTGEKPYKCPECGKSFSREDNLHTHQRTH 156
Query: 300 EEKQKFEC-ECGYVTCNKYRLTEHVRRTH 327
++ ++C ECG + L H +RTH
Sbjct: 157 TGEKPYKCPECGKSFSRRDALNVH-QRTH 184
Score = 48.2 bits (116), Expect = 8e-07
Identities = 67/228 (29%), Positives = 88/228 (38%), Gaps = 53/228 (23%)
Query: 160 AFKLKYYLTLHLRTHTGVRPMFECDICHKVLKTKSKKSSGISKNENLRPCTLCDKKLASE 219
+ G +P + C C K+ S+
Sbjct: 2 SEFGSSSSVAQAALEPGEKP-YACPECG---KSFSRSDH--------------------- 36
Query: 220 RKLKEHIRKQHPTSVEADLIRREK-YEREKVQCPYCAKFLSRKEKLNRHIRTVHT-DVNY 277
L EH R H T EK Y+ CP C K S K+ L RH RT HT + Y
Sbjct: 37 --LAEHQRT-H-T--------GEKPYK-----CPECGKSFSDKKDLTRHQRT-HTGEKPY 78
Query: 278 KCEICGEEFLSKTRYNRHVVTHEEKQKFEC-ECGYVTCNKYRLTEHVRRTHL--KDYKVL 334
KC CG+ F + H TH ++ + C ECG L H +RTH K YK
Sbjct: 79 KCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH-QRTHTGEKPYK-- 135
Query: 335 CPICGYGCFRNAELEEHFISAHSADR-FKCVFCEKSFARNCNLKLHIR 381
CP CG R L H + H+ ++ +KC C KSF+R L +H R
Sbjct: 136 CPECGKSFSREDNLHTHQRT-HTGEKPYKCPECGKSFSRRDALNVHQR 182
Score = 44.0 bits (105), Expect = 2e-05
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 432 TLKKHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCKIC 480
+ L +P+ CPECGK+F ++ H RTHTG P + C C
Sbjct: 8 SSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKP-YKCPEC 55
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 68.3 bits (168), Expect = 3e-14
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
Query: 361 FKCVFCEKSFARNCNLKLHIRRYHDKSDNTECPLCGKSFPSRGRLNEH--LIQVHPAQK- 417
+C C K F LK+H R H ECP CGK + + L EH ++ +++
Sbjct: 8 VECPTCHKKFLSKYYLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV 66
Query: 418 HQCHICNKIVVSEKTLKKHLLLHTNSEPFHCPECGKAFKFKRYVTLHM-RTHTG 470
C +C + L+ H++ HT P+ C C + F K+ + HM + H+G
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 61.4 bits (150), Expect = 9e-12
Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 28/145 (19%)
Query: 34 HTDEFSILCPECGRGFFNEKELAAHKIEIH-GADPFLCIPCNKPFSKIENYRLHQRRYHL 92
+ + CP C + F ++ L H H G PF C C K + + EN H+ R +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHN-RKHTGEKPFECPKCGKCYFRKENLLEHEARNCM 60
Query: 93 NSVNKECKICHKVLRTARLSEHMKQVHYAKLFDCHICGKTVVTEKNYKKHMQLHSDDKPF 152
N SE ++F C +C +T + HM H+ + P+
Sbjct: 61 NR-----------------SE--------QVFTCSVCQETFRRRMELRLHMVSHTGEMPY 95
Query: 153 ECQFCRKAFKLKYYLTLH-LRTHTG 176
+C C + F K L H ++ H+G
Sbjct: 96 KCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 57.5 bits (140), Expect = 2e-10
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 98 ECKICHKV-LRTARLSEHMKQVHYA-KLFDCHICGKTVVTEKNYKKHM---QLHSDDKPF 152
EC CHK L L H + H K F+C CGK ++N +H ++ ++ F
Sbjct: 9 ECPTCHKKFLSKYYLKVHNR-KHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 153 ECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHKVLKTKS 194
C C++ F+ + L LH+ +HTG P ++C C + K
Sbjct: 68 TCSVCQETFRRRMELRLHMVSHTGEMP-YKCSSCSQQFMQKK 108
Score = 52.5 bits (127), Expect = 9e-09
Identities = 41/154 (26%), Positives = 55/154 (35%), Gaps = 46/154 (29%)
Query: 146 HSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHKVLKTKSKKSSGISKNEN 205
S EC C K F KYYL +H R HTG +P FEC C K K
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKCGKCYFRKE----------- 49
Query: 206 LRPCTLCDKKLASERKLKEHIRKQ--HPTSVEADLIRREK-YEREKVQCPYCAKFLSRKE 262
L EH + + R E+ + C C + R+
Sbjct: 50 ---------------NLLEHEARNCMN---------RSEQVFT-----CSVCQETFRRRM 80
Query: 263 KLNRHIRTVHTDVN-YKCEICGEEFLSKTRYNRH 295
+L H+ + HT YKC C ++F+ K H
Sbjct: 81 ELRLHMVS-HTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 46.7 bits (112), Expect = 9e-07
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 440 HTNSEPFHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCKIC 480
+ S CP C K F K Y+ +H R HTG P F C C
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKC 41
Score = 43.3 bits (103), Expect = 2e-05
Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 30/139 (21%)
Query: 277 YKCEICGEEFLSKTRYNRHVVTHEEKQKFEC-ECGYVTCNKYRLTEHVRRTHLKDYKVLC 335
+C C ++FLSK H H ++ FEC +CG K L EH R +
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCM------- 60
Query: 336 PICGYGCFRNAELEEHFISAHSADR-FKCVFCEKSFARNCNLKLHIRRYHDKSDNTECPL 394
+ +++ F C C+++F R L+LH H +C
Sbjct: 61 --------------------NRSEQVFTCSVCQETFRRRMELRLH-MVSHTGEMPYKCSS 99
Query: 395 CGKSFPSRGRLNEHLIQVH 413
C + F + L H+I++H
Sbjct: 100 CSQQFMQKKDLQSHMIKLH 118
Score = 42.1 bits (100), Expect = 4e-05
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 250 QCPYCAKFLSRKEKLNRHIR--TVHTDVN-YKCEICGEEFLSKTRYNRHVVTHEEKQKFE 306
+CP C K RKE L H ++ + C +C E F + H+V+H + ++
Sbjct: 37 ECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYK 96
Query: 307 C-ECGYVTCNKYRLTEHVRRTH 327
C C K L H+ + H
Sbjct: 97 CSSCSQQFMQKKDLQSHMIKLH 118
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 66.9 bits (164), Expect = 2e-13
Identities = 36/123 (29%), Positives = 49/123 (39%), Gaps = 14/123 (11%)
Query: 361 FKCVFCEKSFARNCNLKLHIRRYH--------DKSDNTECPLCGKSFPSRGRLNEHLIQV 412
C+++F+ L H+ H ECP GKSF ++ +L H I+V
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH-IRV 84
Query: 413 HPAQK-HQCHI--CNKIVVSEKTLKKHLLLHTNSEPFHC--PECGKAFKFKRYVTLHMRT 467
H +K C C KI + LK H HT +PF C C + F HM
Sbjct: 85 HTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHV 144
Query: 468 HTG 470
HT
Sbjct: 145 HTS 147
Score = 62.7 bits (153), Expect = 5e-12
Identities = 33/149 (22%), Positives = 55/149 (36%), Gaps = 24/149 (16%)
Query: 44 ECGRGFFNEKELAAHKIEIHGADPFLCIPCNKPFSKIENYRLHQRRYHLNSVNKECKICH 103
G K+ + K C++ FS + H H+ + +C+
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY 61
Query: 104 KVLRTARLSEHMKQVHYAKLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQF--CRKAF 161
+C GK+ + H+++H+ +KPF C F C K F
Sbjct: 62 W-------------------EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIF 102
Query: 162 KLKYYLTLHLRTHTGVRPMFECDI--CHK 188
L +H RTHTG +P F+C+ C +
Sbjct: 103 ARSENLKIHKRTHTGEKP-FKCEFEGCDR 130
Score = 61.1 bits (149), Expect = 2e-11
Identities = 38/171 (22%), Positives = 53/171 (30%), Gaps = 44/171 (25%)
Query: 28 MHIKRKHTDEFSILCPECGRGFFNEKELAAHKIEIHGADPF---------LCIPCNKPFS 78
+ K + S C R F EL H H P C K F
Sbjct: 14 LSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFK 73
Query: 79 KIENYRLHQRRYHLNSVNKECKICHKVLRTARLSEHMKQVHYA-KLFDCHI--CGKTVVT 135
+Y L + H++ VH K F C CGK
Sbjct: 74 ---------AKYKLVN-------------------HIR-VHTGEKPFPCPFPGCGKIFAR 104
Query: 136 EKNYKKHMQLHSDDKPFECQF--CRKAFKLKYYLTLHLRTHTGVRPMFECD 184
+N K H + H+ +KPF+C+F C + F H+ HT +
Sbjct: 105 SENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKS-GPSS 154
Score = 53.1 bits (128), Expect = 1e-08
Identities = 36/189 (19%), Positives = 55/189 (29%), Gaps = 48/189 (25%)
Query: 129 CGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHK 188
G + K + + C + F + L H+ P +C+
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 189 VLKTKSKKSSGISKNENLRPCTLCDKKLASERKLKEHIR-----KQHPTSVEADLIRREK 243
C K ++ KL HIR K P
Sbjct: 63 ------------------EECPREGKSFKAKYKLVNHIRVHTGEKPFP------------ 92
Query: 244 YEREKVQCPY--CAKFLSRKEKLNRHIRTVHT-DVNYKCEI--CGEEFLSKTRYNRHVVT 298
CP+ C K +R E L H RT HT + +KCE C F + + +H+
Sbjct: 93 -------CPFPGCGKIFARSENLKIHKRT-HTGEKPFKCEFEGCDRRFANSSDRKKHMHV 144
Query: 299 HEEKQKFEC 307
H +
Sbjct: 145 HTSDKSGPS 153
Score = 50.4 bits (121), Expect = 1e-07
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 12/87 (13%)
Query: 396 GKSFPSRGRLNEHLI--QVHPAQK-HQCHICNKIVVSEKTLKKHLLLHTNSEPFH----- 447
G S S + + L + AQ C++ + L H+ + P
Sbjct: 1 GSSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
Query: 448 ----CPECGKAFKFKRYVTLHMRTHTG 470
CP GK+FK K + H+R HTG
Sbjct: 61 YWEECPREGKSFKAKYKLVNHIRVHTG 87
Score = 37.7 bits (88), Expect = 0.002
Identities = 32/141 (22%), Positives = 48/141 (34%), Gaps = 16/141 (11%)
Query: 282 CGEEFLSKTRYNRHVVTHEEKQKFEC-ECGYVTCNKYRLTEHVRRTHL-KDYKVLCPICG 339
G + E + C + L HV H+ +
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 340 YGCFRN-------AELEEHFISAHSADR-FKCVF--CEKSFARNCNLKLHIRRYH--DKS 387
C R +L H I H+ ++ F C F C K FAR+ NLK+H +R H +K
Sbjct: 63 EECPREGKSFKAKYKLVNH-IRVHTGEKPFPCPFPGCGKIFARSENLKIH-KRTHTGEKP 120
Query: 388 DNTECPLCGKSFPSRGRLNEH 408
E C + F + +H
Sbjct: 121 FKCEFEGCDRRFANSSDRKKH 141
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 61.4 bits (150), Expect = 8e-12
Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 361 FKCVF--CEKSFARNCNLKLHIRRYHDKSDNTECPLCGKSFPSRGRLNEHLIQVHPAQK- 417
C C K F N ++ H+ + + C CGK+F +L H VH +K
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTHGPRVH--VCAECGKAFVESSKLKRH-QLVHTGEKP 62
Query: 418 HQCHI--CNKIVVSEKTLKKHLLLHTNSEPFHCP--ECGKAFKFKRYVTLHMRTHTG 470
QC C K + L+ H+ +HT P+ CP C K F + H+ TH
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 119
Score = 57.9 bits (141), Expect = 1e-10
Identities = 33/143 (23%), Positives = 49/143 (34%), Gaps = 35/143 (24%)
Query: 42 CPECGRGFFNEKELAAHKIEIHGADPFLCIPCNKPFSKIENYRLHQRRYHLNSVNKECKI 101
C + F + + H HG +C C K F + + HQ
Sbjct: 10 HKGCTKMFRDNSAMRKHLH-THGPRVHVCAECGKAFVESSKLKRHQL------------- 55
Query: 102 CHKVLRTARLSEHMKQVHYA-KLFDCHI--CGKTVVTEKNYKKHMQLHSDDKPFECQF-- 156
VH K F C CGK + N + H+++H+ D+P+ C F
Sbjct: 56 ----------------VHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDG 99
Query: 157 CRKAFKLKYYLTLHLRTHTGVRP 179
C K F L H+ TH +
Sbjct: 100 CNKKFAQSTNLKSHILTHAKAKN 122
Score = 56.8 bits (138), Expect = 3e-10
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 111 LSEHMKQVHYAKLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQF--CRKAFKLKYYLT 168
+ +H+ H ++ C CGK V K+H +H+ +KPF+C F C K F L + L
Sbjct: 23 MRKHLH-THGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR 81
Query: 169 LHLRTHTGVRPMFEC 183
H+R HTG RP + C
Sbjct: 82 THVRIHTGDRP-YVC 95
Score = 45.6 bits (109), Expect = 2e-06
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 125 DCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
C K +KH+ H + C C KAF L H HTG +P F+C
Sbjct: 9 PHKGCTKMFRDNSAMRKHLHTHGP-RVHVCAECGKAFVESSKLKRHQLVHTGEKP-FQC 65
Score = 37.5 bits (88), Expect = 0.001
Identities = 36/145 (24%), Positives = 56/145 (38%), Gaps = 40/145 (27%)
Query: 246 REK-VQCPY--CAKFLSRKEKLNRHIRTVHTDVNYKCEICGEEFLSKTRYNRHVVTHEEK 302
+ + CP+ C K + +H+ T H + C CG+ F+ ++ RH + H +
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHT-HGPRVHVCAECGKAFVESSKLKRHQLVHTGE 60
Query: 303 QKFEC---ECGYVTCNKYRLTEHVRRTHLKDYKVLCPICGYGCFRNAELEEHFISAHSAD 359
+ F+C CG + L HVR H+ D
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHVR------------------------------IHTGD 90
Query: 360 R-FKCVF--CEKSFARNCNLKLHIR 381
R + C F C K FA++ NLK HI
Sbjct: 91 RPYVCPFDGCNKKFAQSTNLKSHIL 115
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 59.7 bits (146), Expect = 1e-11
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 391 ECPLCGKSFPSRGRLNEHLIQVHPAQK-HQCHICNKIVVSEKTLKKHLLLHTNSEPFHCP 449
+C +CGK F + +L H ++ H K ++C C+ +L KHL +H++ PF C
Sbjct: 10 KCEVCGKCFSRKDKLKTH-MRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 450 ECGKAFKFKRYVTLHMRTHTG 470
C A + +T+H+R+HTG
Sbjct: 69 ICPYASRNSSQLTVHLRSHTG 89
Score = 56.3 bits (137), Expect = 3e-10
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 98 ECKICHKVL-RTARLSEHMKQVHYA-KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQ 155
+C++C K R +L HM+ H K + C C + KH+++HSD++PF+CQ
Sbjct: 10 KCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 156 FCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
C A + LT+HLR+HTG
Sbjct: 69 ICPYASRNSSQLTVHLRSHTGDSG-PSS 95
Score = 46.6 bits (112), Expect = 6e-07
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 146 HSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHK 188
P +C+ C K F K L H+R HTGV+P ++C C
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDY 44
Score = 44.3 bits (106), Expect = 4e-06
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 440 HTNSEPFHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCKIC 480
+S P C CGK F K + HMR HTG P + CK C
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTC 42
Score = 42.8 bits (102), Expect = 1e-05
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 250 QCPYCAKFLSRKEKLNRHIRTVHTDVN-YKCEICGEEFLSKTRYNRHVVTHEEKQKFEC- 307
+C C K SRK+KL H+R HT V YKC+ C + N+H+ H +++ F+C
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRC-HTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQ 68
Query: 308 ECGYVTCNKYRLTEHVRRTH 327
C Y + N +LT H R+H
Sbjct: 69 ICPYASRNSSQLTVH-LRSH 87
Score = 34.7 bits (81), Expect = 0.008
Identities = 21/115 (18%), Positives = 33/115 (28%), Gaps = 32/115 (27%)
Query: 42 CPECGRGFFNEKELAAHKIEIH-GADPFLCIPCNKPFSKIENYRLHQRRYHLNSVNKECK 100
C CG+ F + +L H H G P+ C C+ + + H R
Sbjct: 11 CEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLR------------ 57
Query: 101 ICHKVLRTARLSEHMKQVHYA-KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFEC 154
+H + F C IC H++ H+ D
Sbjct: 58 -----------------IHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 32.8 bits (76), Expect = 0.040
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Query: 298 THEEKQKFEC-ECGYVTCNKYRLTEHVRRTHL--KDYKVLCPICGYGCFRNAELEEHFIS 354
+ +C CG K +L H R H K YK C C Y ++ L +H +
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTH-MRCHTGVKPYK--CKTCDYAAADSSSLNKH-LR 57
Query: 355 AHSADR-FKCVFCEKSFARNCNLKLHIR 381
HS +R FKC C + + L +H+R
Sbjct: 58 IHSDERPFKCQICPYASRNSSQLTVHLR 85
Score = 31.6 bits (73), Expect = 0.11
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 361 FKCVFCEKSFARNCNLKLHIRRYHDKSDNTECPLCGKSFPSRGRLNEH 408
+KC C+ + A + +L H R H +C +C + + +L H
Sbjct: 37 YKCKTCDYAAADSSSLNKH-LRIHSDERPFKCQICPYASRNSSQLTVH 83
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 58.2 bits (142), Expect = 4e-11
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 391 ECPL--CGKSFPSRGRLNEHLIQVHPAQK-HQCHICNKIVVSEKTLKKHLLLHTNSEPFH 447
CP+ C + F G L H I++H QK QC IC + L H+ HT +PF
Sbjct: 6 ACPVESCDRRFSQSGSLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA 64
Query: 448 CPECGKAFKFKRYVTLHMRTHTG 470
C CG+ F H + H
Sbjct: 65 CDICGRKFARSDERKRHTKIHLR 87
Score = 55.6 bits (135), Expect = 4e-10
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 129 CGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHK 188
C + + +H+++H+ KPF+C+ C + F +LT H+RTHTG +P F CDIC +
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGR 70
Score = 50.5 bits (122), Expect = 2e-08
Identities = 15/55 (27%), Positives = 23/55 (41%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTG 176
K F C IC + + H++ H+ +KPF C C + F H + H
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLR 87
Score = 48.6 bits (117), Expect = 1e-07
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 432 TLKKHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCKIC 480
+L +H+ +HT +PF C C + F ++T H+RTHTG P F C IC
Sbjct: 21 SLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDIC 68
Score = 35.9 bits (84), Expect = 0.003
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Query: 254 CAKFLSRKEKLNRHIRTVHTDVN-YKCEICGEEFLSKTRYNRHVVTHEEKQKFEC-ECGY 311
C + S+ L RHIR HT ++C IC F H+ TH ++ F C CG
Sbjct: 12 CDRRFSQSGSLTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70
Query: 312 VTCNKYRLTEHVRRTH 327
H + H
Sbjct: 71 KFARSDERKRH-TKIH 85
Score = 34.0 bits (79), Expect = 0.014
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 250 QCPYCAKFLSRKEKLNRHIRTVHTDVN-YKCEICGEEFLSKTRYNRHVVTH 299
QC C + SR + L HIRT HT + C+ICG +F RH H
Sbjct: 36 QCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 30.9 bits (71), Expect = 0.18
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 12/82 (14%)
Query: 308 ECGYVTCNK-----YRLTEHVRRTHL--KDYKVLCPICGYGCFRNAELEEHFISAHSADR 360
C +C++ LT H R H K ++ C IC R+ L H I H+ ++
Sbjct: 6 ACPVESCDRRFSQSGSLTRH-IRIHTGQKPFQ--CRICMRNFSRSDHLTTH-IRTHTGEK 61
Query: 361 -FKCVFCEKSFARNCNLKLHIR 381
F C C + FAR+ K H +
Sbjct: 62 PFACDICGRKFARSDERKRHTK 83
Score = 29.7 bits (68), Expect = 0.42
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 44 ECGRGFFNEKELAAHKIEIH-GADPFLCIPCNKPFSKIENYRLHQR 88
C R F L H IH G PF C C + FS+ ++ H R
Sbjct: 11 SCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIR 55
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 58.6 bits (143), Expect = 6e-11
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMF 181
KL+ C CGK+ + +HM +H +P+ C C K FK+K++L H++ HTG++P +
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKP-Y 66
Query: 182 ECDICHKVLKTKS 194
EC+IC K +
Sbjct: 67 ECNICAKRFMWRD 79
Score = 51.3 bits (124), Expect = 2e-08
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMF 181
+ + C +CGK + + HM++H+ KP+EC C K F + + H + + +
Sbjct: 36 RPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRD--SFHRHVTSCTKS-Y 92
Query: 182 ECDICHKVLKTKSKKSSG 199
E + S SSG
Sbjct: 93 EAAKAEQNTTEASGPSSG 110
Score = 50.9 bits (123), Expect = 3e-08
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 395 CGKSFPSRGRLNEHLIQVHPAQK-HQCHICNKIVVSEKTLKKHLLLHTNSEPFHCPECGK 453
CGKSF + + + H+ +H + + C +C K + L H+ +HT +P+ C C K
Sbjct: 15 CGKSFTHKSQRDRHM-SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAK 73
Query: 454 AFKFKRYVTLHMRTHTGNWPTFVCKIC 480
F ++ + H + +
Sbjct: 74 RFMWRD--SFHRHVTSCTKS-YEAAKA 97
Score = 47.4 bits (114), Expect = 5e-07
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 146 HSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHKVLKTKS 194
S DK + CQ C K+F K H+ H G+RP + C +C K K K
Sbjct: 5 SSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRP-YGCGVCGKKFKMKH 51
Score = 37.4 bits (88), Expect = 0.001
Identities = 23/153 (15%), Positives = 40/153 (26%), Gaps = 64/153 (41%)
Query: 305 FECECGYVTCNKYRLTEHVRRTHL--KDYKVLCPICGYGCFRNAELEEHFISAHSADRFK 362
+ C+CG +K + H HL + Y C +CG
Sbjct: 11 YPCQCGKSFTHKSQRDRH-MSMHLGLRPYG--CGVCG----------------------- 44
Query: 363 CVFCEKSFARNCNLKLHIRRYHDKSDNTECPLCGKSFPSRGRLNEHLIQVHPAQKHQCHI 422
K F +L H + H EC +C K F R + H
Sbjct: 45 -----KKFKMKHHLVGH-MKIHTGIKPYECNICAKRFMWRDSFHRH-------------- 84
Query: 423 CNKIVVSEKTLKKHLLLHTNSEPFHCPECGKAF 455
+ + ++ + + +
Sbjct: 85 ----------------VTSCTKSYEAAKAEQNT 101
Score = 37.4 bits (88), Expect = 0.002
Identities = 23/139 (16%), Positives = 45/139 (32%), Gaps = 35/139 (25%)
Query: 32 RKHTDEFSILCPECGRGFFNEKELAAHKIEIH-GADPFLCIPCNKPFSKIENYRLHQRRY 90
+ + C +CG+ F ++ + H +H G P+ C C K F + H +
Sbjct: 3 SGSSGDKLYPC-QCGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMK-- 58
Query: 91 HLNSVNKECKICHKVLRTARLSEHMKQVHYA-KLFDCHICGKTVVTEKNYKKHMQLHSDD 149
+H K ++C+IC K + ++ H + S
Sbjct: 59 ---------------------------IHTGIKPYECNICAKRFMWRDSF--HRHVTSCT 89
Query: 150 KPFECQFCRKAFKLKYYLT 168
K +E + +
Sbjct: 90 KSYEAAKAEQNTTEASGPS 108
Score = 31.6 bits (73), Expect = 0.15
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 250 QCPYCAKFLSRKEKLNRHIRTVHTDVN-YKCEICGEEFLSKTRYNRHVVTHEEKQKFEC- 307
C C K K L H++ HT + Y+C IC + F+ + ++RHV + + +E
Sbjct: 39 GCGVCGKKFKMKHHLVGHMKI-HTGIKPYECNICAKRFMWRDSFHRHVTSCT--KSYEAA 95
Query: 308 ECG 310
+
Sbjct: 96 KAE 98
Score = 30.9 bits (71), Expect = 0.22
Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 9/93 (9%)
Query: 252 PY---CAKFLSRKEKLNRHIRTVHTDVN-YKCEICGEEFLSKTRYNRHVVTHEEKQKFEC 307
Y C K + K + +RH+ H + Y C +CG++F K H+ H + +EC
Sbjct: 10 LYPCQCGKSFTHKSQRDRHMSM-HLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYEC 68
Query: 308 -ECGYVTCNKYRLTEHVRRTHLKDYKVLCPICG 339
C + HV + K Y+
Sbjct: 69 NICAKRFMWRDSFHRHV-TSCTKSYE--AAKAE 98
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 57.4 bits (140), Expect = 7e-11
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 124 FDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
FDC ICGK+ H+ +HSD +P+ CQ+C K F K + H HTG +P +C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP-HKC 60
Query: 184 DICHK 188
+C K
Sbjct: 61 QVCGK 65
Score = 55.5 bits (135), Expect = 3e-10
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 391 ECPLCGKSFPSRGRLNEHLIQVHPAQK-HQCHICNKIVVSEKTLKKHLLLHTNSEPFHCP 449
+C +CGKSF L+ HL+ +H + + C C K + +KKH +HT +P C
Sbjct: 3 DCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 450 ECGKAFKFKRYVTLHMRTHTG 470
CGKAF + H R HTG
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 49.7 bits (120), Expect = 3e-08
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 98 ECKICHKVL-RTARLSEHMKQVHYA-KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQ 155
+CKIC K R++ LS H+ +H + + C CGK + + KKH +H+ +KP +CQ
Sbjct: 3 DCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 156 FCRKAFKLKYYLTLHLRTHTG 176
C KAF L H R HTG
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 48.6 bits (117), Expect = 8e-08
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 419 QCHICNKIVVSEKTLKKHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCK 478
C IC K TL HLL+H+++ P+ C CGK F K + H HTG P C+
Sbjct: 3 DCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP-HKCQ 61
Query: 479 IC 480
+C
Sbjct: 62 VC 63
Score = 38.9 bits (92), Expect = 2e-04
Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 11 FSCSLCSYSVTIKRNLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIEIH-GADPFL 69
F C +C S L H H+D C CG+ F + ++ H IH G P
Sbjct: 2 FDCKICGKSFKRSSTLSTH-LLIHSDTRPYPCQYCGKRFHQKSDMKKHTF-IHTGEKPHK 59
Query: 70 CIPCNKPFSKIENYRLHQR 88
C C K FS+ N H R
Sbjct: 60 CQVCGKAFSQSSNLITHSR 78
Score = 34.7 bits (81), Expect = 0.008
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 250 QCPYCAKFLSRKEKLNRHIRTVHTDVN-YKCEICGEEFLSKTRYNRHVVTHEEKQKFEC- 307
C C K R L+ H+ +H+D Y C+ CG+ F K+ +H H ++ +C
Sbjct: 3 DCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 308 ECGYVTCNKYRLTEHVRRTH 327
CG L H R H
Sbjct: 62 VCGKAFSQSSNLITH-SRKH 80
Score = 27.0 bits (61), Expect = 3.5
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 277 YKCEICGEEFLSKTRYNRHVVTHEEKQKFEC-ECGYVTCNKYRLTEHVRRTHL--KDYKV 333
+ C+ICG+ F + + H++ H + + + C CG K + +H H K +K
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH-TFIHTGEKPHK- 59
Query: 334 LCPICGYGCFRNAELEEH 351
C +CG +++ L H
Sbjct: 60 -CQVCGKAFSQSSNLITH 76
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 57.9 bits (141), Expect = 1e-10
Identities = 32/115 (27%), Positives = 46/115 (40%), Gaps = 9/115 (7%)
Query: 361 FKC--VFCEKSFARNCNLKLHIRRYH--DKSDNTECPLCGKSFPSRGRLNEHLIQVHPAQ 416
F C C K + + +L++H R+ H +K + C + F +L H + H
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRK-HTGEKPYQCDFKDCERRFSRSDQLKRH-QRRHTGV 64
Query: 417 K-HQCHICNKIVVSEKTLKKHLLLHTNSEPFHC--PECGKAFKFKRYVTLHMRTH 468
K QC C + LK H HT +PF C P C K F + H H
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 53.3 bits (129), Expect = 5e-09
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 393 PLCGKSFPSRGRLNEHLIQVHPAQK-HQCHI--CNKIVVSEKTLKKHLLLHTNSEPFHCP 449
P C K + L H + H +K +QC C + LK+H HT +PF C
Sbjct: 12 PGCNKRYFKLSHLQMH-SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCK 70
Query: 450 ECGKAFKFKRYVTLHMRTHTG 470
C + F ++ H RTHTG
Sbjct: 71 TCQRKFSRSDHLKTHTRTHTG 91
Score = 51.4 bits (124), Expect = 2e-08
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 129 CGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDI--C 186
C + K+H + H+ KPF+C+ C++ F +L H RTHTG +P F C C
Sbjct: 44 CERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKP-FSCRWPSC 102
Query: 187 HK 188
K
Sbjct: 103 QK 104
Score = 43.3 bits (103), Expect = 1e-05
Identities = 38/156 (24%), Positives = 58/156 (37%), Gaps = 47/156 (30%)
Query: 150 KPFEC--QFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHKVLKTKSKKSSGISKNENLR 207
+PF C C K + +L +H R HTG +P ++CD
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKP-YQCDFKD-------------------- 43
Query: 208 PCTLCDKKLASERKLKEHIRKQHPTSVEADLIRREK-YEREKVQCPYCAKFLSRKEKLNR 266
C+++ + +LK H R+ H T K ++ C C + SR + L
Sbjct: 44 ----CERRFSRSDQLKRHQRR-H-TG--------VKPFQ-----CKTCQRKFSRSDHLKT 84
Query: 267 HIRTVHTDVN-YKCEI--CGEEFLSKTRYNRHVVTH 299
H RT HT + C C ++F RH H
Sbjct: 85 HTRT-HTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 35.6 bits (83), Expect = 0.008
Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 13/111 (11%)
Query: 308 ECGYVTCNK-----YRLTEHVRRTHL--KDYKVLCPICGYGCFRNAELEEHFISAHSADR 360
C Y CNK L H R H K Y+ C R+ +L+ H H+ +
Sbjct: 8 MCAYPGCNKRYFKLSHLQMH-SRKHTGEKPYQCDFKDCERRFSRSDQLKRH-QRRHTGVK 65
Query: 361 -FKCVFCEKSFARNCNLKLHIRRYH--DKSDNTECPLCGKSFPSRGRLNEH 408
F+C C++ F+R+ +LK H R H +K + P C K F L H
Sbjct: 66 PFQCKTCQRKFSRSDHLKTHTRT-HTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 32.9 bits (76), Expect = 0.063
Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 25 NLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIEIH-GADPFLCIP--CNKPFSKIE 81
L H +R+HT C C R F L H H G PF C C K F++ +
Sbjct: 53 QLKRH-QRRHTGVKPFQCKTCQRKFSRSDHLKTHTR-THTGEKPFSCRWPSCQKKFARSD 110
Query: 82 NYRLHQR 88
H
Sbjct: 111 ELVRHHN 117
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 57.1 bits (139), Expect = 2e-10
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 391 ECPLCGKSFPSRGRLNEHLIQVHPAQK-HQCHICNKIVVSEKTLKKHLLLHTNSEPFHCP 449
C CG+ F L H H ++ + C IC+K + L+ H +H+ +PF C
Sbjct: 19 ICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 450 ECGKAFKFKRYVTLHMRTHTG 470
ECGK F R + +H H
Sbjct: 78 ECGKGFCQSRTLAVHKTLHMQ 98
Score = 55.5 bits (135), Expect = 6e-10
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMF 181
K F C CG+ N H + H+D++P+ C C KAF+ + +L H H+ +P F
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKP-F 74
Query: 182 ECDICHK 188
+C C K
Sbjct: 75 KCQECGK 81
Score = 55.1 bits (134), Expect = 7e-10
Identities = 27/131 (20%), Positives = 44/131 (33%), Gaps = 33/131 (25%)
Query: 55 LAAHKIEIH-GADPFLCIPCNKPFSKIENYRLHQRRYHLNSVNKECKICHKVLRTARLSE 113
+ ++ F+C C + F+K N +H+R
Sbjct: 5 SSGGRL-PSKTKKEFICKFCGRHFTKSYNLLIHER------------------------- 38
Query: 114 HMKQVHYA-KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLR 172
H + + C IC K + + + H +HS +KPF+CQ C K F L +H
Sbjct: 39 ----THTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKT 94
Query: 173 THTGVRPMFEC 183
H
Sbjct: 95 LHMQTSS-PTA 104
Score = 55.1 bits (134), Expect = 9e-10
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHK 188
K F C+FC + F Y L +H RTHT RP + CDICHK
Sbjct: 7 GGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERP-YTCDICHK 53
Score = 47.4 bits (114), Expect = 4e-07
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 432 TLKKHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCKIC 480
L + F C CG+ F + +H RTHT P + C IC
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERP-YTCDIC 51
Score = 40.1 bits (95), Expect = 1e-04
Identities = 25/132 (18%), Positives = 37/132 (28%), Gaps = 33/132 (25%)
Query: 25 NLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIEIH-GADPFLCIPCNKPFSKIENY 83
+ + +C CGR F L H+ H P+ C C+K F + ++
Sbjct: 4 GSSGG-RLPSKTKKEFICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHL 61
Query: 84 RLHQRRYHLNSVNKECKICHKVLRTARLSEHMKQVHYA-KLFDCHICGKTVVTEKNYKKH 142
R H+ +H K F C CGK + H
Sbjct: 62 RDHRY-----------------------------IHSKEKPFKCQECGKGFCQSRTLAVH 92
Query: 143 MQLHSDDKPFEC 154
LH
Sbjct: 93 KTLHMQTSSPTA 104
Score = 36.6 bits (86), Expect = 0.002
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 250 QCPYCAKFLSRKEKLNRHIRTVHTDVN-YKCEICGEEFLSKTRYNRHVVTHEEKQKFEC- 307
C +C + ++ L H RT HTD Y C+IC + F + H H +++ F+C
Sbjct: 19 ICKFCGRHFTKSYNLLIHERT-HTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 308 ECGYVTCNKYRLTEHVRRTH 327
ECG C L H + H
Sbjct: 78 ECGKGFCQSRTLAVH-KTLH 96
Score = 27.0 bits (61), Expect = 5.3
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 9 EK-FSCSLCSYSVTIKRNLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIEIH-GAD 66
E+ ++C +C + + +L H + H+ E C ECG+GF + LA HK +H
Sbjct: 43 ERPYTCDICHKAFRRQDHLRDH-RYIHSKEKPFKCQECGKGFCQSRTLAVHKT-LHMQTS 100
Query: 67 PFLC 70
Sbjct: 101 SPTA 104
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 58.4 bits (142), Expect = 3e-10
Identities = 49/179 (27%), Positives = 62/179 (34%), Gaps = 38/179 (21%)
Query: 25 NLIMHIKRKHTDEFSILCPE--CGRGFFNEKELAAHKIEIH-GADPFLC--IPCNKPFSK 79
L H KHT E C E C +GF + L H + H G F C C+ F+
Sbjct: 29 KLQAH-LCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSL-THTGEKNFTCDSDGCDLRFTT 86
Query: 80 IENYRLHQRRYHLNSVNKECKICHKVLRTARLSEHMKQVHYAKLFDCHI--CGKTVVTEK 137
N + H R+H K Y CH CGK
Sbjct: 87 KANMKKHFNRFHNI----------------------KICVY----VCHFENCGKAFKKHN 120
Query: 138 NYKKHMQLHSDDKPFEC--QFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHKVLKTKS 194
K H H+ P+EC + C K F L L H + H G + D C V KT +
Sbjct: 121 QLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC-KKDDSCSFVGKTWT 178
Score = 55.7 bits (135), Expect = 3e-09
Identities = 45/209 (21%), Positives = 66/209 (31%), Gaps = 44/209 (21%)
Query: 141 KHMQLHSDDKPFECQF--CRKAFKLKYYLTLHLRTHTGVRPMFECD--ICHKVLKTKSKK 196
L K + C F C A+ + L HL HTG +P F C C K +
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKP-FPCKEEGCEKGFTSLH-- 58
Query: 197 SSGISKNENLR------------PCT--LCDKKLASERKLKEHIRKQHPTSVEADLIRRE 242
+L C CD + ++ +K+H + H
Sbjct: 59 --------HLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFH----------NI 100
Query: 243 KYEREKVQCPYCAKFLSRKEKLNRHIRTVHTDVN-YKC--EICGEEFLSKTRYNRHVVTH 299
K C K + +L H + HT Y+C E C + F +R RH H
Sbjct: 101 KICVYVCHFENCGKAFKKHNQLKVHQFS-HTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 159
Query: 300 EEKQKFEC-ECGYVTCNKYRLTEHVRRTH 327
+ C +V +HV H
Sbjct: 160 AGYPCKKDDSCSFVGKTWTLYLKHVAECH 188
Score = 55.7 bits (135), Expect = 3e-09
Identities = 33/124 (26%), Positives = 41/124 (33%), Gaps = 13/124 (10%)
Query: 361 FKC--VFCEKSFARNCNLKLHIRRYHDKSDNTEC--PLCGKSFPSRGRLNEHLIQVHPAQ 416
F C CEK F +L H H N C C F ++ + +H
Sbjct: 43 FPCKEEGCEKGFTSLHHLTRH-SLTHTGEKNFTCDSDGCDLRFTTKANMKKH-FNRFHNI 100
Query: 417 KHQ---CHI--CNKIVVSEKTLKKHLLLHTNSEPFHCPE--CGKAFKFKRYVTLHMRTHT 469
K CH C K LK H HT P+ CP C K F + H + H
Sbjct: 101 KICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 160
Query: 470 GNWP 473
G
Sbjct: 161 GYPC 164
Score = 51.8 bits (125), Expect = 6e-08
Identities = 34/127 (26%), Positives = 49/127 (38%), Gaps = 23/127 (18%)
Query: 360 RFKCVF--CEKSFARNCNLKLHIRRYHDKSDNT-----EC--PLCGKSFPSRGRLNEHLI 410
R+ C F C ++ +N L+ H H T C C K F S L H +
Sbjct: 12 RYICSFADCGAAYNKNWKLQAH-LCKH-----TGEKPFPCKEEGCEKGFTSLHHLTRHSL 65
Query: 411 QVHPAQK-HQC--HICNKIVVSEKTLKKHLLLHTN--SEPFHC--PECGKAFKFKRYVTL 463
H +K C C+ ++ +KKH N + C CGKAFK + +
Sbjct: 66 -THTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKV 124
Query: 464 HMRTHTG 470
H +HT
Sbjct: 125 HQFSHTQ 131
Score = 50.7 bits (122), Expect = 1e-07
Identities = 42/190 (22%), Positives = 66/190 (34%), Gaps = 18/190 (9%)
Query: 295 HVVTHEEKQKFEC---ECGYVTCNKYRLTEHVRRTHL--KDYKVLCPICGYGCFRNAELE 349
+++ C +CG ++L H H K + C G L
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAH-LCKHTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 350 EHFISAHSADR-FKC--VFCEKSFARNCNLKLHIRRYH-DKSDNTECPL--CGKSFPSRG 403
H ++ H+ ++ F C C+ F N+K H R+H K C CGK+F
Sbjct: 62 RHSLT-HTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHN 120
Query: 404 RLNEHLIQVHPAQK-HQCH--ICNKIVVSEKTLKKHLLLHTNSEPFHCPECGKAFK-FKR 459
+L H H Q ++C C+K LK+H +H C K +
Sbjct: 121 QLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTL 179
Query: 460 YVTLHMRTHT 469
Y+ H
Sbjct: 180 YLKHVAECHQ 189
Score = 49.5 bits (119), Expect = 4e-07
Identities = 38/190 (20%), Positives = 58/190 (30%), Gaps = 50/190 (26%)
Query: 122 KLFDCH--ICGKTVVTEKNYKKHMQLHSDDKPFEC--QFCRKAFKLKYYLTLHLRTHTGV 177
K F C C K + + +H H+ +K F C C F K + H +
Sbjct: 41 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNI 100
Query: 178 RPM-FECDICHKVLKTKSKKSSGISKNENLRPCTLCDKKLASERKLKEHIRKQHPTSVEA 236
+ + C + C K +LK H H
Sbjct: 101 KICVYVCHFEN------------------------CGKAFKKHNQLKVHQF-SH------ 129
Query: 237 DLIRREK-YEREKVQC--PYCAKFLSRKEKLNRHIRTVHT-DVNYKCEICGEEFLSKTRY 292
++ YE C C K S +L RH + H K + C + T Y
Sbjct: 130 ---TQQLPYE-----CPHEGCDKRFSLPSRLKRHEKV-HAGYPCKKDDSCSFVGKTWTLY 180
Query: 293 NRHVV-THEE 301
+HV H++
Sbjct: 181 LKHVAECHQD 190
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 55.6 bits (135), Expect = 4e-10
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTG--VRP 179
C ICGK + +H HS +KP+ C C FK K ++ H+R+H G +P
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP 65
Query: 180 MFECDICHK 188
+ C C K
Sbjct: 66 -YICQSCGK 73
Score = 52.5 bits (127), Expect = 5e-09
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 391 ECPLCGKSFPSRGRLNEHLIQVHPAQK-HQCHICNKIVVSEKTLKKHLLLHT--NSEPFH 447
C +CGK F LN H + H +K + C +C + + H+ H +P+
Sbjct: 9 ACEICGKIFRDVYHLNRHKL-SHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 448 CPECGKAFKFKRYVTLHM-RTHTG 470
C CGK F ++ H+ + H+G
Sbjct: 68 CQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 51.0 bits (123), Expect = 2e-08
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 418 HQCHICNKIVVSEKTLKKHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTGNWPT-FV 476
C IC KI L +H L H+ +P+ CP CG FK K ++ H+R+H G+ ++
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 477 CKIC 480
C+ C
Sbjct: 68 CQSC 71
Score = 47.9 bits (115), Expect = 2e-07
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 146 HSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHKVLKTKSKKSS--GISKN 203
S C+ C K F+ Y+L H +H+G +P + C +C K K + S
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYHVRSHDG 60
Query: 204 ENLRP--CTLCDKKLASERKLKEHIRKQH 230
+P C C K + L HI++ H
Sbjct: 61 SVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 45.2 bits (108), Expect = 2e-06
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 440 HTNSEPFHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCKIC 480
+ S C CGK F+ ++ H +H+G P + C +C
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVC 41
Score = 44.4 bits (106), Expect = 4e-06
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 250 QCPYCAKFLSRKEKLNRHIRTVHT-DVNYKCEICGEEFLSKTRYNRHVVTH--EEKQKFE 306
C C K LNRH + H+ + Y C +CG F K R + HV +H + +
Sbjct: 9 ACEICGKIFRDVYHLNRHKLS-HSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 307 C-ECGYVTCNKYRLTEHVRRTH 327
C CG L H+++ H
Sbjct: 68 CQSCGKGFSRPDHLNGHIKQVH 89
Score = 40.6 bits (96), Expect = 8e-05
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 9 EK-FSCSLCSYSVTIKRNLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIEIH---G 64
+C +C +L H K H+ E CP CG F + ++ H H
Sbjct: 5 SSGVACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVR-SHDGSV 62
Query: 65 ADPFLCIPCNKPFSKIENYRLHQRRYH 91
P++C C K FS+ ++ H ++ H
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 30.5 bits (70), Expect = 0.27
Identities = 22/115 (19%), Positives = 34/115 (29%), Gaps = 34/115 (29%)
Query: 34 HTDEFSILCPECGRGFFNEKELAAHKIEIH-GADPFLCIPCNKPFSKIENYRLHQRRYHL 92
+ + C CG+ F + L HK+ H G P+ C C F + + H R
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKL-SHSGEKPYSCPVCGLRFKRKDRMSYHVR---- 56
Query: 93 NSVNKECKICHKVLRTARLSEHMKQVH---YAKLFDCHICGKTVVTEKNYKKHMQ 144
H K + C CGK + H++
Sbjct: 57 -------------------------SHDGSVGKPYICQSCGKGFSRPDHLNGHIK 86
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 54.7 bits (132), Expect = 6e-10
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSD---DKPFECQFCRKAFKLKYYLTLHLRTHTGVR 178
C ICG T + + H + H++ F C+FC K F+ + H
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65
Query: 179 PMFECDICHKV 189
+ +
Sbjct: 66 LLAPQESSGPS 76
Score = 52.8 bits (127), Expect = 3e-09
Identities = 15/66 (22%), Positives = 20/66 (30%), Gaps = 3/66 (4%)
Query: 418 HQCHICNKIVVSEKTLKKHLLLHTNSE---PFHCPECGKAFKFKRYVTLHMRTHTGNWPT 474
QC IC + +L H H + F C CGK F+ V H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 475 FVCKIC 480
+
Sbjct: 68 APQESS 73
Score = 47.0 bits (112), Expect = 2e-07
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 361 FKCVFCEKSFARNCNLKLHIRRYHDKSDNT---ECPLCGKSFPSRGRLNEHLIQVHPAQK 417
+C C + + +L H R+ H ++ C CGK F + H + HPA
Sbjct: 8 LQCEICGFTCRQKASLNWHQRK-HAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66
Query: 418 HQCH 421
Sbjct: 67 LAPQ 70
Score = 46.2 bits (110), Expect = 6e-07
Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 146 HSDDKPFECQFCRKAFKLKYYLTLHLRTHT---GVRPMFECDICHKVLKTKS 194
S +C+ C + K L H R H F C+ C K +
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPD 52
Score = 43.9 bits (104), Expect = 4e-06
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 335 CPICGYGCFRNAELEEHFISAHSADR----FKCVFCEKSFARNCNLKLHIRRYHDKSDNT 390
C ICG+ C + A L H H+ F C FC K F + ++ H + H
Sbjct: 10 CEICGFTCRQKASLNWH-QRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLA 68
Query: 391 ECPLCGKSF 399
G S
Sbjct: 69 PQESSGPSS 77
Score = 42.4 bits (100), Expect = 1e-05
Identities = 15/64 (23%), Positives = 20/64 (31%), Gaps = 5/64 (7%)
Query: 250 QCPYCAKFLSRKEKLNRHIRTVHTDVN----YKCEICGEEFLSKTRYNRHVVTHEEKQKF 305
QC C +K LN H R H + + CE CG+ F H
Sbjct: 9 QCEICGFTCRQKASLNWHQRK-HAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 306 ECEC 309
+
Sbjct: 68 APQE 71
Score = 40.9 bits (96), Expect = 5e-05
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 440 HTNSEPFHCPECGKAFKFKRYVTLHMRTHTGNWPT--FVCKIC 480
+ S C CG + K + H R H F C+ C
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFC 44
Score = 38.5 bits (90), Expect = 3e-04
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 11 FSCSLCSYSVTIKRNLIMHIKRKHTDEFSIL---CPECGRGFFNEKELAAHKIEIHGADP 67
C +C ++ K +L H +RKH + + L C CG+ F +AAH+ + H A
Sbjct: 8 LQCEICGFTCRQKASLNWH-QRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALL 66
Query: 68 FLCIPCNKPFS 78
+ P S
Sbjct: 67 LAPQESSGPSS 77
Score = 35.5 bits (82), Expect = 0.003
Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
Query: 277 YKCEICGEEFLSKTRYNRHVVTHEEKQK---FECE-CGYVTCNKYRLTEHVRRTHLKDYK 332
+CEICG K N H H E F CE CG + H ++H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 333 VLCPICG 339
G
Sbjct: 68 APQESSG 74
Score = 32.4 bits (74), Expect = 0.046
Identities = 14/92 (15%), Positives = 21/92 (22%), Gaps = 25/92 (27%)
Query: 64 GADPFLCIPCNKPFSKIENYRLHQRRYHLNSVNKECKICHKVLRTARLSEHMKQVHYAKL 123
G+ C C + + HQR+ H ++
Sbjct: 4 GSSGLQCEICGFTCRQKASLNWHQRK-H----------------AETVAA--------LR 38
Query: 124 FDCHICGKTVVTEKNYKKHMQLHSDDKPFECQ 155
F C CGK + H Q
Sbjct: 39 FPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQ 70
Score = 30.8 bits (70), Expect = 0.14
Identities = 12/72 (16%), Positives = 21/72 (29%), Gaps = 11/72 (15%)
Query: 209 CTLCDKKLASERKLKEHIRKQHPTSVEADLIRREKYEREKVQCPYCAKFLSRKEKLNRHI 268
C +C + L H RK T + C +C K + + + H
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAA-----------LRFPCEFCGKRFEKPDSVAAHR 58
Query: 269 RTVHTDVNYKCE 280
H + +
Sbjct: 59 SKSHPALLLAPQ 70
Score = 30.8 bits (70), Expect = 0.16
Identities = 7/45 (15%), Positives = 12/45 (26%), Gaps = 1/45 (2%)
Query: 3 HSQEDTEK-FSCSLCSYSVTIKRNLIMHIKRKHTDEFSILCPECG 46
H++ F C C ++ H + H G
Sbjct: 30 HAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSG 74
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 56.4 bits (137), Expect = 8e-10
Identities = 47/209 (22%), Positives = 73/209 (34%), Gaps = 72/209 (34%)
Query: 277 YKCEICGEEFLSKTRYNRHVVT---HEEKQKFEC-ECGYVTCNK-----YRLTEHVRRTH 327
+ + C +EF S+ + H+ + H E+++F C G + Y L H+ R H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM-RRH 62
Query: 328 L--KDYKVLCPICGYGCFRNAELEEHFISAHSADRFKCVFCEKSFARNCNLKLHIRRYH- 384
K +K C G C KS++R NLK H+ R H
Sbjct: 63 TGEKPHK--CTFEG--------------------------CRKSYSRLENLKTHL-RSHT 93
Query: 385 -DKSDNTECPLCGKSFPSRGRLNEHLIQVHPAQKHQCHICNKIVVSEKTLKKHLLLHTNS 443
+K E C K+F + KHQ H+N
Sbjct: 94 GEKPYMCEHEGCSKAFSNASDRA----------KHQNRT-----------------HSNE 126
Query: 444 EPFHC--PECGKAFKFKRYVTLHMRTHTG 470
+P+ C P C K + + H++T G
Sbjct: 127 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 54.1 bits (131), Expect = 5e-09
Identities = 29/128 (22%), Positives = 45/128 (35%), Gaps = 29/128 (22%)
Query: 67 PFLCIPCNKPFSKIENYRLHQRRYHLNSVNK--ECKICHKVLRTARLSEHMKQVHYAKLF 124
C++ F E H H++ K C
Sbjct: 3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWG---------------------- 40
Query: 125 DCHICGKTVVTEKNYKKHMQLHSDDKPFECQF--CRKAFKLKYYLTLHLRTHTGVRPMFE 182
C + + HM+ H+ +KP +C F CRK++ L HLR+HTG +P +
Sbjct: 41 GCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKP-YM 99
Query: 183 C--DICHK 188
C + C K
Sbjct: 100 CEHEGCSK 107
Score = 51.1 bits (123), Expect = 6e-08
Identities = 36/158 (22%), Positives = 57/158 (36%), Gaps = 31/158 (19%)
Query: 42 CPECGRGFFNEKELAAHKIEIH---GADPFLCIPCN-----KPFSKIENYRLHQRR---- 89
C + F ++++L H H F+C +PF +H RR
Sbjct: 6 WDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE 65
Query: 90 --YHLNSVNKECKI--CHKVL-RTARLSEHMKQVHYA-KLFDCH--ICGKTVVTEKNYKK 141
+ +C C K R L H++ H K + C C K + K
Sbjct: 66 KPH-------KCTFEGCRKSYSRLENLKTHLR-SHTGEKPYMCEHEGCSKAFSNASDRAK 117
Query: 142 HMQ-LHSDDKPFECQF--CRKAFKLKYYLTLHLRTHTG 176
H HS++KP+ C+ C K + L H++T G
Sbjct: 118 HQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 48.0 bits (115), Expect = 6e-07
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQ---LHSDDKPFECQFC-----RKAFKLKYYLTLHLRT 173
C + +++ H+ +H + K F C + + FK +Y L +H+R
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 174 HTGVRPMFECDI--CHKV 189
HTG +P +C C K
Sbjct: 62 HTGEKP-HKCTFEGCRKS 78
Score = 32.6 bits (75), Expect = 0.14
Identities = 7/40 (17%), Positives = 11/40 (27%), Gaps = 4/40 (10%)
Query: 445 PFHCPECGKAFKFKRYVTLHM---RTHTGNWPTFVCKICN 481
C + F + + H+ H FVC
Sbjct: 3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKE-FVCHWGG 41
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 53.7 bits (130), Expect = 2e-09
Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 5/71 (7%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLH----SDDKPFECQFCRKAFKLKYYLTLHLRTHTGV 177
K + C C KT ++ H + + F C C K F + + H G
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGP 73
Query: 178 RPMFECDICHK 188
E +
Sbjct: 74 DG-VEGENSGP 83
Score = 46.8 bits (112), Expect = 4e-07
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 138 NYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPM---FECDICHK 188
+ + H+ +KP+ C C K F+ K L +H + + + F C C K
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGK 55
Score = 46.4 bits (111), Expect = 5e-07
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 432 TLKKHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTGNWPT---FVCKIC 480
+ HT +P+ C C K F+ K+ + +H + + FVC C
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKC 53
Score = 46.0 bits (110), Expect = 7e-07
Identities = 15/90 (16%), Positives = 23/90 (25%), Gaps = 25/90 (27%)
Query: 391 ECPLCGKSFPSRGRLNEHLIQVHPAQKHQCHICNKIVVSEKTLKKHLLLHTNSEPFHCPE 450
C C K+F + L+ H K + F C +
Sbjct: 17 ACSHCDKTFRQKQLLDMHF---------------KRYHDPNFVPA---------AFVCSK 52
Query: 451 CGKAFKFKRYVTLHMRTHTGNWPTFVCKIC 480
CGK F + + H G +
Sbjct: 53 CGKTFTRRNTMARHADNCAGPDG-VEGENS 81
Score = 46.0 bits (110), Expect = 8e-07
Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 31/98 (31%)
Query: 361 FKCVFCEKSFARNCNLKLHIRRYHDKSDNT---ECPLCGKSFPSRGRLNEHLIQVHPAQK 417
+ C C+K+F + L +H +RYHD + C CGK+F R
Sbjct: 16 YACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN-------------- 61
Query: 418 HQCHICNKIVVSEKTLKKHLLLHTNSEPFHCPECGKAF 455
T+ +H + G +
Sbjct: 62 --------------TMARHADNCAGPDGVEGENSGPSS 85
Score = 40.6 bits (96), Expect = 6e-05
Identities = 17/108 (15%), Positives = 29/108 (26%), Gaps = 26/108 (24%)
Query: 55 LAAHKIEIH-GADPFLCIPCNKPFSKIENYRLHQRRYHLNSVNKECKICHKVLRTARLSE 113
+ H G P+ C C+K F + + +H +R
Sbjct: 3 SGSSG-RTHTGEKPYACSHCDKTFRQKQLLDMHFKR------------------------ 37
Query: 114 HMKQVHYAKLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAF 161
+ F C CGKT +H + E + +
Sbjct: 38 YHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 36.3 bits (85), Expect = 0.002
Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 5/68 (7%)
Query: 25 NLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKI----EIHGADPFLCIPCNKPFSKI 80
+ R HT E C C + F ++ L H F+C C K F++
Sbjct: 2 SSGSS-GRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRR 60
Query: 81 ENYRLHQR 88
H
Sbjct: 61 NTMARHAD 68
Score = 35.2 bits (82), Expect = 0.005
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Query: 250 QCPYCAKFLSRKEKLNRHIRTVHTDVN-----YKCEICGEEFLSKTRYNRHVVTHEEKQK 304
C +C K +K+ L+ H + + D N + C CG+ F + RH
Sbjct: 17 ACSHCDKTFRQKQLLDMHFKR-YHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDG 75
Query: 305 FEC-ECG 310
E G
Sbjct: 76 VEGENSG 82
Score = 30.6 bits (70), Expect = 0.24
Identities = 21/121 (17%), Positives = 32/121 (26%), Gaps = 39/121 (32%)
Query: 167 LTLHLRTHTGVRPMFECDICHKVLKTKSKKSSGISKNENLRPCTLCDKKLASERKLKEHI 226
RTHTG +P + C C K + K L H
Sbjct: 3 SGSSGRTHTGEKP-YACSHCDKTFRQKQL--------------------------LDMHF 35
Query: 227 RKQHPTSVEADLIRREKYEREKVQCPYCAKFLSRKEKLNRHIRTVHTDVN-YKCEICGEE 285
++ H + C C K +R+ + RH + + E G
Sbjct: 36 KRYH----------DPNFVPAAFVCSKCGKTFTRRNTMARHADN-CAGPDGVEGENSGPS 84
Query: 286 F 286
Sbjct: 85 S 85
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 51.8 bits (125), Expect = 5e-09
Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 29/95 (30%)
Query: 138 NYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHKVLKTKSKKS 197
+ + HS +KP+EC C F + +H+
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHT--------------------- 40
Query: 198 SGISKNENLRP--CTLCDKKLASERKLKEHIRKQH 230
EN+ C CD +A + L H+RKQH
Sbjct: 41 ------ENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 49.8 bits (120), Expect = 2e-08
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 432 TLKKHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG-NWPTFVCKICNATIS 485
+ H+ +P+ C C F + +H+ N F C C+ I+
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIA 56
Score = 47.9 bits (115), Expect = 1e-07
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 418 HQCHICNKIVVSEKTLKKHLLLHT--NSEPFHCPECGKAFKFKRYVTLHMRT-HTG 470
++C+IC+ T+K H+L N FHCP C K + +H+R H+
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY 71
Score = 45.2 bits (108), Expect = 1e-06
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 361 FKCVFCEKSFARNCNLKLHIRRYHDKSDNT-ECPLCGKSFPSRGRLNEHLIQVH 413
++C C F ++ +K+HI + H ++ CP C + L HL + H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 42.9 bits (102), Expect = 7e-06
Identities = 24/108 (22%), Positives = 35/108 (32%), Gaps = 41/108 (37%)
Query: 167 LTLHLRTHTGVRPMFECDICHKVLKTKSKKSSGISKNENLRPCTLCDKKLASERKLKEHI 226
RTH+G +P +EC ICH +K HI
Sbjct: 3 SGSSGRTHSGEKP-YECYICHARFTQSGT--------------------------MKMHI 35
Query: 227 RKQHPTSVEADLIRREKYEREKV-QCPYCAKFLSRKEKLNRHIRTVHT 273
++H E CP+C ++RK L H+R H+
Sbjct: 36 LQKHT-------------ENVAKFHCPHCDTVIARKSDLGVHLRKQHS 70
Score = 40.2 bits (95), Expect = 7e-05
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 263 KLNRHIRTVHTDVN-YKCEICGEEFLSKTRYNRHVVTH--EEKQKFEC-ECGYVTCNKYR 318
RT H+ Y+C IC F H++ E KF C C V K
Sbjct: 2 SSGSSGRT-HSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSD 60
Query: 319 LTEHVRRTH 327
L H+R+ H
Sbjct: 61 LGVHLRKQH 69
Score = 37.5 bits (88), Expect = 6e-04
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 25 NLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIEIHGAD--PFLCIPCNKPFSKIEN 82
+ R H+ E C C F + H ++ H + F C C+ ++ +
Sbjct: 2 SSGSS-GRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSD 60
Query: 83 YRLHQRRYH 91
+H R+ H
Sbjct: 61 LGVHLRKQH 69
Score = 37.5 bits (88), Expect = 7e-04
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Query: 319 LTEHVRRTHL--KDYKVLCPICGYGCFRNAELEEHFISAHSADR---FKCVFCEKSFARN 373
RTH K Y+ C IC ++ ++ H I + F C C+ AR
Sbjct: 3 SGSS-GRTHSGEKPYE--CYICHARFTQSGTMKMH-ILQKHTENVAKFHCPHCDTVIARK 58
Query: 374 CNLKLHIRRYH 384
+L +H+R+ H
Sbjct: 59 SDLGVHLRKQH 69
Score = 29.4 bits (67), Expect = 0.43
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 3 HSQEDTEKFSCSLCSYSVTIKRNLIMHIKRKHTDE 37
E+ KF C C + K +L +H++++H+
Sbjct: 38 KHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYS 72
Score = 28.6 bits (65), Expect = 0.81
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 98 ECKICHKVL-RTARLSEHMKQVH--YAKLFDCHICGKTVVTEKNYKKHMQ-LHSDDKPF 152
EC ICH ++ + H+ Q H F C C + + + H++ HS P
Sbjct: 17 ECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 50.6 bits (122), Expect = 1e-08
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 146 HSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHKVLKTKS 194
S P +C C + K L +H R H RP F+C+ C K S
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPS 51
Score = 49.8 bits (120), Expect = 2e-08
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTG 176
C C + ++ + H ++H D+PF+C +C K L+ H++ G
Sbjct: 8 HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Score = 45.6 bits (109), Expect = 7e-07
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 420 CHICNKIVVSEKTLKKHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
C C+ S+ L+ H +H PF C C K ++ HM+ G
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
Score = 34.8 bits (81), Expect = 0.005
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 361 FKCVFCEKSFARNCNLKLHIRRYHDKSDNTECPLCGKSFPSRGRLNEHL 409
KC C S + L++H R H +C C L++H+
Sbjct: 10 EKCSECSYSCSSKAALRIH-ERIHCTDRPFKCNYCSFDTKQPSNLSKHM 57
Score = 34.0 bits (79), Expect = 0.010
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 277 YKCEICGEEFLSKTRYNRHVVTHEEKQKFEC-ECGYVTCNKYRLTEHVRRTH 327
KC C SK H H + F+C C + T L++H +
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKH-MKKF 60
Score = 33.2 bits (77), Expect = 0.017
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 11/76 (14%)
Query: 325 RTHL--KDYKVLCPICGYGCFRNAELEEHFISAHSADR-FKCVFCEKSFARNCNLKLHIR 381
+ K C C Y C A L H H DR FKC +C + NL H++
Sbjct: 2 SSGSSGHPEK--CSECSYSCSSKAALRIH-ERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
Query: 382 RYH-DKSDNTECPLCG 396
++H D S P G
Sbjct: 59 KFHGDMS----GPSSG 70
Score = 31.3 bits (72), Expect = 0.079
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 32 RKHTDEFSILCPECGRGFFNEKELAAHKIEIH-GADPFLCIPCNKPFSKIENYRLHQR 88
+ C EC ++ L H+ IH PF C C+ + N H +
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHE-RIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58
Score = 29.0 bits (66), Expect = 0.57
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 9 EK-FSCSLCSYSVTIKRNLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHK 59
CS CSYS + K L +H +R H + C C L+ H
Sbjct: 7 GHPEKCSECSYSCSSKAALRIH-ERIHCTDRPFKCNYCSFDTKQPSNLSKHM 57
Score = 26.3 bits (59), Expect = 5.2
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 9 EK-FSCSLCSYSVTIKRNLIMHIKRKHTDEFSILCPECG 46
++ F C+ CS+ NL H +K + S P G
Sbjct: 35 DRPFKCNYCSFDTKQPSNLSKH-MKKFHGDMS--GPSSG 70
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 50.5 bits (122), Expect = 1e-08
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
K + C CGK +H ++H+ +KP++C C KAF L H R HT
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPS 70
Score = 49.4 bits (119), Expect = 4e-08
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHKVLKTKS 194
+HS +KP+ C C KAF L H R HTG +P ++C C K S
Sbjct: 4 GSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFSQNS 56
Score = 45.2 bits (108), Expect = 9e-07
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 433 LKKHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCKIC 480
+H+ +P+ C ECGKAF + H R HTG P + C C
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLEC 48
Score = 45.2 bits (108), Expect = 1e-06
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 418 HQCHICNKIVVSEKTLKKHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
+ C C K L +H +HT +P+ C ECGKAF + H R HT
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTS 67
Score = 35.5 bits (83), Expect = 0.003
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 26 LIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIEIH-GADPFLCIPCNKPFSKIENYR 84
H+ E C ECG+ F L H+ +H G P+ C+ C K FS+
Sbjct: 2 SSGS-SGIHSGEKPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLI 59
Query: 85 LHQR 88
HQR
Sbjct: 60 NHQR 63
Score = 30.9 bits (71), Expect = 0.11
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 361 FKCVFCEKSFARNCNLKLHIRRYHDKSDNTECPLCGKSFPSRGRLNEH 408
+ CV C K+F+R+ L H +R H +C CGK+F L H
Sbjct: 15 YGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 28.6 bits (65), Expect = 0.83
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 264 LNRHIRTVHT-DVNYKCEICGEEFLSKTRYNRHVVTHEEKQKFEC-ECGYVTCNKYRLTE 321
+ +H+ + Y C CG+ F + +H H ++ ++C ECG L
Sbjct: 2 SSGSSG-IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLIN 60
Query: 322 HVRRTH 327
H +R H
Sbjct: 61 H-QRIH 65
Score = 27.8 bits (63), Expect = 1.4
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 250 QCPYCAKFLSRKEKLNRHIRTVHTDVN-YKCEICGEEFLSKTRYNRHVVTH 299
C C K SR L +H R VHT YKC CG+ F + H H
Sbjct: 16 GCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 25.5 bits (57), Expect = 9.0
Identities = 6/22 (27%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 167 LTLHLRTHTGVRPMFECDICHK 188
+ H+G +P + C C K
Sbjct: 2 SSGSSGIHSGEKP-YGCVECGK 22
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 50.2 bits (121), Expect = 2e-08
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Query: 122 KLFDCHI--CGKTVVTEKNYKKHMQL-HSDDKPFECQF--CRKAFKLKYYLTLHLRTHTG 176
C CG+ + H + H K F C C K+F K +L H++ H+
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSD 65
Query: 177 VRPMFECDICHK 188
R + C+
Sbjct: 66 TRD-YICEFSGP 76
Score = 47.5 bits (114), Expect = 2e-07
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 391 ECPLCGKSFPSRGRLNEHLIQVHPAQK-HQC--HICNKIVVSEKTLKKHLLLHTNSEPFH 447
+ P CG+ F +R LN H H QK C C K +K LK+H+ LH+++ +
Sbjct: 11 DFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYI 70
Query: 448 CPECGKAF 455
C G +
Sbjct: 71 CEFSGPSS 78
Score = 46.8 bits (112), Expect = 4e-07
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 423 CNKIVVSEKTLKKHL-LLHTNSEPFHCPE--CGKAFKFKRYVTLHMRTHTGNWPTFVCKI 479
C +I + + L H H + + F CPE CGK+F FK+++ HM+ H+ ++C+
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRD-YICEF 73
Query: 480 C 480
Sbjct: 74 S 74
Score = 41.8 bits (99), Expect = 2e-05
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 111 LSEHMKQVHYA-KLFDC--HICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAF 161
L+ H K H K F C CGK+ +K+ K+HM+LHSD + + C+F +
Sbjct: 25 LNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 38.7 bits (91), Expect = 3e-04
Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 6/54 (11%)
Query: 146 HSDDKPFECQF--CRKAFKLKYYLTLHLR-THTGVRPMFECD--ICHKVLKTKS 194
S C F C + F + YL H + H + F C C K K
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKS-FSCPEPACGKSFNFKK 54
Score = 37.1 bits (87), Expect = 0.001
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 440 HTNSEPFHC--PECGKAFKFKRYVTLHMR-THTGNWPTFVCK 478
+ S C P CG+ F ++Y+ H + H F C
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKS-FSCP 42
Score = 36.8 bits (86), Expect = 0.001
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 251 CPYCAKFLSRKEKLNRHIRTVHT-DVNYKCE--ICGEEFLSKTRYNRHVVTHEEKQKFEC 307
P C + S ++ LN H + H ++ C CG+ F K H+ H + + + C
Sbjct: 12 FPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 71
Query: 308 -ECG 310
G
Sbjct: 72 EFSG 75
Score = 32.9 bits (76), Expect = 0.032
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 34 HTDE--FSILCPECGRGFFNEKELAAHKIEIH-GADPFLC--IPCNKPFSKIENYRLHQR 88
+ P CGR F N + L HK H F C C K F+ ++ + H +
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Score = 31.8 bits (73), Expect = 0.076
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Query: 11 FSCSL--CSYSVTIKRNLIMHIKRKHTDEFSILCPE--CGRGFFNEKELAAHKIEIH-GA 65
C C + ++ L H K +H + S CPE CG+ F +K L H +H
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK-LHSDT 66
Query: 66 DPFLCIPCNKPF 77
++C
Sbjct: 67 RDYICEFSGPSS 78
Score = 27.9 bits (63), Expect = 1.9
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 252 PYCAKFLSRKEKLNRHIRTVHTDVN-YKCEICGEEF 286
P C K + K+ L H++ H+D Y CE G
Sbjct: 44 PACGKSFNFKKHLKEHMKL-HSDTRDYICEFSGPSS 78
Score = 27.1 bits (61), Expect = 2.7
Identities = 21/100 (21%), Positives = 30/100 (30%), Gaps = 34/100 (34%)
Query: 305 FEC---ECGYVTCNKYRLTEHVRRTHL--KDYKVLCPICGYGCFRNAELEEHFISAHSAD 359
C CG + N+ L H + H+ K + CP
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFS--CPEPA-------------------- 45
Query: 360 RFKCVFCEKSFARNCNLKLHIRRYHDKSDNTECPLCGKSF 399
C KSF +LK H + H + + C G S
Sbjct: 46 ------CGKSFNFKKHLKEH-MKLHSDTRDYICEFSGPSS 78
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 49.9 bits (120), Expect = 3e-08
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 129 CGKTVVTEKNYKKHMQLHSDDKPFECQF--CRKAFKLKYYLTLHLRTHTGVRPMFECDIC 186
CGK K H H+ P+EC C K F L L H + H G + D C
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC-KKDDSC 67
Query: 187 HKVLKTKS 194
V KT +
Sbjct: 68 SFVGKTWT 75
Score = 41.8 bits (99), Expect = 2e-05
Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 5/68 (7%)
Query: 418 HQCHI--CNKIVVSEKTLKKHLLLHTNSEPFHC--PECGKAFKFKRYVTLHMRTHTGNWP 473
+ CH C K LK H HT P+ C C K F + H + H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 474 TFVCKICN 481
C+
Sbjct: 62 -KKDDSCS 68
Score = 38.0 bits (89), Expect = 5e-04
Identities = 19/82 (23%), Positives = 28/82 (34%), Gaps = 5/82 (6%)
Query: 391 ECPLCGKSFPSRGRLNEHLIQVHPAQK-HQCH--ICNKIVVSEKTLKKHLLLHTNSEPFH 447
CGK+F +L H H Q ++C C+K LK+H +H
Sbjct: 5 HFENCGKAFKKHNQLKVHQFS-HTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKK 63
Query: 448 CPECGKAFK-FKRYVTLHMRTH 468
C K + Y+ H
Sbjct: 64 DDSCSFVGKTWTLYLKHVAECH 85
Score = 35.3 bits (82), Expect = 0.005
Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 5/81 (6%)
Query: 251 CPYCAKFLSRKEKLNRHIRTVHTDVN-YKC--EICGEEFLSKTRYNRHVVTHEEKQKFEC 307
C K + +L H + HT Y+C E C + F +R RH H +
Sbjct: 6 FENCGKAFKKHNQLKVHQFS-HTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
Query: 308 -ECGYVTCNKYRLTEHVRRTH 327
C +V +HV H
Sbjct: 65 DSCSFVGKTWTLYLKHVAECH 85
Score = 33.4 bits (77), Expect = 0.026
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 152 FECQF--CRKAFKLKYYLTLHLRTHTGVRPMFECD 184
+ C F C KAFK L +H +HT P +EC
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLP-YECP 35
Score = 32.6 bits (75), Expect = 0.045
Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 5/70 (7%)
Query: 25 NLIMHIKRKHTDEFSILC--PECGRGFFNEKELAAHKIEIH-GADPFLCIPCNKPFSKIE 81
L +H + HT + C C + F L H+ ++H G C+
Sbjct: 18 QLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHE-KVHAGYPCKKDDSCSFVGKTWT 75
Query: 82 NYRLHQRRYH 91
Y H H
Sbjct: 76 LYLKHVAECH 85
Score = 31.4 bits (72), Expect = 0.12
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Query: 129 CGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLK-YYLTLHLRTH 174
C K K+H ++H+ + C K YL H
Sbjct: 39 CDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 28.7 bits (65), Expect = 1.0
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 361 FKCVF--CEKSFARNCNLKLHIRRYHDKSDNTECPLCGKSFPSRGRLNEHLIQVH 413
++C C+K F+ LK H + H + C + +H+ + H
Sbjct: 32 YECPHEGCDKRFSLPSRLKRH-EKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 28.4 bits (64), Expect = 1.5
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 42 CPECGRGFFNEKELAAHKIEIH-GADPFLC--IPCNKPFSKIENYRLHQRRYHLNSVNKE 98
CG+ F +L H+ H P+ C C+K FS + H++ H K+
Sbjct: 6 FENCGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKV-HAGYPCKK 63
Query: 99 CKICHKVLRT-ARLSEHMKQVH 119
C V +T +H+ + H
Sbjct: 64 DDSCSFVGKTWTLYLKHVAECH 85
Score = 26.4 bits (59), Expect = 5.7
Identities = 14/83 (16%), Positives = 20/83 (24%), Gaps = 6/83 (7%)
Query: 308 ECGYVTCNK-----YRLTEHVRR-THLKDYKVLCPICGYGCFRNAELEEHFISAHSADRF 361
C + C K +L H T Y+ C + L+ H
Sbjct: 3 VCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCK 62
Query: 362 KCVFCEKSFARNCNLKLHIRRYH 384
K C H+ H
Sbjct: 63 KDDSCSFVGKTWTLYLKHVAECH 85
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 50.2 bits (121), Expect = 3e-08
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMF 181
K F C IC + + H++ H+ +KPF C C + F H P
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-LP-I 59
Query: 182 ECDICHK 188
D +
Sbjct: 60 LEDKVEE 66
Score = 49.0 bits (118), Expect = 6e-08
Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Query: 391 ECPLCGKSFPSRGRLNEHLIQVHPAQK-HQCHICNKIVVSEKTLKKHLLLHTNSEPFHCP 449
+C +C ++F L H I+ H +K C IC + K+H + P
Sbjct: 5 QCRICMRNFSRSDHLTTH-IRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPILED 62
Query: 450 ECGKAFKFKRYVTLH---MRTHTG 470
+ + ++ ++ G
Sbjct: 63 KVEELLSKNYHLENEVARLKKLVG 86
Score = 45.6 bits (109), Expect = 1e-06
Identities = 15/52 (28%), Positives = 19/52 (36%)
Query: 418 HQCHICNKIVVSEKTLKKHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHT 469
QC IC + L H+ HT +PF C CG+ F H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 43.3 bits (103), Expect = 6e-06
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 98 ECKICHKVL-RTARLSEHMKQVHYA-KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQ 155
+C+IC + R+ L+ H++ H K F C ICG+ K+H + P
Sbjct: 5 QCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHRDIQHI-LPILED 62
Query: 156 FCRKAFKLKYYLTLH---LRTHTG 176
+ Y+L L+ G
Sbjct: 63 KVEELLSKNYHLENEVARLKKLVG 86
Score = 42.5 bits (101), Expect = 2e-05
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 445 PFHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCKIC 480
PF C C + F ++T H+RTHTG P F C IC
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDIC 37
Score = 42.1 bits (100), Expect = 2e-05
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Query: 250 QCPYCAKFLSRKEKLNRHIRTVHT-DVNYKCEICGEEFLSKTRYNRHVVTHEEKQKFEC- 307
QC C + SR + L HIRT HT + + C+ICG +F RH
Sbjct: 5 QCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHRDIQHIL-PILED 62
Query: 308 ECGYVTCNKYRLTEHVR--RTH 327
+ + Y L V +
Sbjct: 63 KVEELLSKNYHLENEVARLKKL 84
Score = 39.4 bits (93), Expect = 2e-04
Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 11 FSCSLCSYSVTIKRNLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIEIHGADPFLC 70
F C +C + + +L H R HT E C CGR F E H+ I P L
Sbjct: 4 FQCRICMRNFSRSDHLTTH-IRTHTGEKPFACDICGRKFARSDERKRHRD-IQHILPILE 61
Query: 71 IPCNKPFSKIENYRLHQRR 89
+ SK + R
Sbjct: 62 DKVEELLSKNYHLENEVAR 80
Score = 39.0 bits (92), Expect = 2e-04
Identities = 28/127 (22%), Positives = 40/127 (31%), Gaps = 46/127 (36%)
Query: 150 KPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHKVLKTKSKKSSGISKNENLRPC 209
KPF+C+ C + F +LT H+RTHTG +P F CDIC
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDIC----------------------- 37
Query: 210 TLCDKKLASERKLKEHIRKQHPTSVEADLIRREK-YEREKVQCPYCAKFLSRKEKLNRHI 268
+K A + K H I+ + LS+ L +
Sbjct: 38 ---GRKFARSDERKRHRD-----------IQHILPIL-----EDKVEELLSKNYHLENEV 78
Query: 269 RT--VHT 273
Sbjct: 79 ARLKKLV 85
Score = 27.1 bits (61), Expect = 4.2
Identities = 20/106 (18%), Positives = 32/106 (30%), Gaps = 29/106 (27%)
Query: 277 YKCEICGEEFLSKTRYNRHVVTHEEKQKFECECGYVTCNKYRLTEHVRRTHLKDYKVLCP 336
++C IC F H+ TH T K + C
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTH--------------------------TGEKPFA--CD 35
Query: 337 ICGYGCFRNAELEEHFISAHSADRFKCVFCEKSFARNCNLKLHIRR 382
ICG R+ E + H E+ ++N +L+ + R
Sbjct: 36 ICGRKFARSDERKRH-RDIQHILPILEDKVEELLSKNYHLENEVAR 80
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 50.9 bits (121), Expect = 4e-08
Identities = 13/104 (12%), Positives = 35/104 (33%), Gaps = 6/104 (5%)
Query: 371 ARNCNLKLHIRRYHDKSDNTECPLCGKSFPSRGRLNEHLIQVH-----PAQKHQCHICNK 425
+ + KL+ + C C ++ + L H+ + + +
Sbjct: 2 SSGSSGKLY-GSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRW 60
Query: 426 IVVSEKTLKKHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHT 469
+++L + + C CG +F+ + +++HM
Sbjct: 61 SKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 45.9 bits (108), Expect = 2e-06
Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 6/100 (6%)
Query: 138 NYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLR-THTGVRPMFECDICHKVLKTKSKK 196
+ K + + + F C+ C A+ LT+H+ T E D + +K +K
Sbjct: 6 SGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRK 65
Query: 197 SSGISKNENLRP-----CTLCDKKLASERKLKEHIRKQHP 231
S + C C S + L H+ K
Sbjct: 66 RSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKH 105
Score = 42.4 bits (99), Expect = 3e-05
Identities = 16/131 (12%), Positives = 35/131 (26%), Gaps = 27/131 (20%)
Query: 55 LAAHKIEIHGADPFLCIPCNKPFSKIENYRLHQRR-YHLNSVNKECKICHKVLRTARLSE 113
+ GA F C C+ + + +H H N E
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHET-------------- 52
Query: 114 HMKQVHYAKLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHL-- 171
+ + + +++ + K +C +C +F+ L++H+
Sbjct: 53 ----------DNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIK 102
Query: 172 RTHTGVRPMFE 182
H
Sbjct: 103 TKHYQKVSGPS 113
Score = 40.1 bits (93), Expect = 2e-04
Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 5/95 (5%)
Query: 295 HVVTHEEKQKFEC-ECGYVTCNKYRLTEHVRRTHLKDYK----VLCPICGYGCFRNAELE 349
+ KF C +C LT H+ T + R L
Sbjct: 10 YGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLL 69
Query: 350 EHFISAHSADRFKCVFCEKSFARNCNLKLHIRRYH 384
E + KC++C SF +L +H+ +
Sbjct: 70 EMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 35.5 bits (81), Expect = 0.008
Identities = 16/98 (16%), Positives = 28/98 (28%), Gaps = 7/98 (7%)
Query: 31 KRKHTDEFSILCPECGRGFFNEKELAAHKIEIH-----GADPFLCIPCNKPFSKIENYRL 85
T C +C + EL H E + P + +
Sbjct: 11 GSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLE 70
Query: 86 HQRRYHLNSVNKECKICHKVLRTAR-LSEHMKQVHYAK 122
+ + V K C C + + LS HM + + +
Sbjct: 71 MEGKEDAQKVLK-CMYCGHSFESLQDLSVHMIKTKHYQ 107
Score = 34.0 bits (77), Expect = 0.025
Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 4/86 (4%)
Query: 10 KFSCSLCSYSVTIKRNLIMHIK----RKHTDEFSILCPECGRGFFNEKELAAHKIEIHGA 65
KF C CS + L +H+ + + + ++ L + +
Sbjct: 19 KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQ 78
Query: 66 DPFLCIPCNKPFSKIENYRLHQRRYH 91
C+ C F +++ +H +
Sbjct: 79 KVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 31.3 bits (70), Expect = 0.24
Identities = 17/96 (17%), Positives = 25/96 (26%), Gaps = 9/96 (9%)
Query: 209 CTLCDKKLASERKLKEHIRKQHPTSVEADLIRREKYEREKVQCPYCAKFLSRKEKLNRHI 268
C C + +L H+ + E RK L
Sbjct: 22 CKDCSAAYDTLVELTVHMNETG---------HYRDDNHETDNNNPKRWSKPRKRSLLEME 72
Query: 269 RTVHTDVNYKCEICGEEFLSKTRYNRHVVTHEEKQK 304
KC CG F S + H++ + QK
Sbjct: 73 GKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQK 108
Score = 30.9 bits (69), Expect = 0.30
Identities = 15/84 (17%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Query: 250 QCPYCAKFLSRKEKLNRHIRTVH--TDVNYKCEICGEEFLSKTRYN---RHVVTHEEKQK 304
+C C+ +L H+ D N++ + + SK R + ++
Sbjct: 21 RCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKV 80
Query: 305 FECE-CGYVTCNKYRLTEHVRRTH 327
+C CG+ + L+ H+ +T
Sbjct: 81 LKCMYCGHSFESLQDLSVHMIKTK 104
Score = 26.7 bits (58), Expect = 8.6
Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 2 EHSQEDTEKFSCSLCSYSVTIKRNLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKI 60
+ ++ E + + +S KR+L+ + K + + C CG F + ++L+ H I
Sbjct: 44 HYRDDNHETDNNNPKRWSKPRKRSLLEM-EGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 48.3 bits (116), Expect = 4e-08
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 146 HSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
S +KPF C C KAF K YL +H +TH +P
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP-SGP 41
Score = 44.8 bits (107), Expect = 7e-07
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 440 HTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
+ +PF C C KAF K Y+ +H +TH
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAE 35
Score = 26.0 bits (58), Expect = 3.8
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFEC 154
K F C C K ++ H Q H+++KP
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 25.2 bits (56), Expect = 6.6
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 354 SAHSADR-FKCVFCEKSFARNCNLKLHIR 381
S S ++ F C CEK+F+ L +H +
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQ 31
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 49.0 bits (118), Expect = 5e-08
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHK 188
H + DKP++C C+ +F+ K L H HTG +P + C+IC
Sbjct: 7 HHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGA 53
Score = 48.2 bits (116), Expect = 9e-08
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
K + C C + + N H +H+ +KP+ C C F L H R H+G +P
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 45.9 bits (110), Expect = 7e-07
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 433 LKKHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCKIC 480
H + + +P+ C C +F++K + H HTG P + C IC
Sbjct: 5 HHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKP-YRCNIC 51
Score = 44.4 bits (106), Expect = 2e-06
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 405 LNEHLIQ---VHPAQK-HQCHICNKIVVSEKTLKKHLLLHTNSEPFHCPECGKAFKFKRY 460
+ H + + K ++C C + L H +HT +P+ C CG F
Sbjct: 1 MGHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPAN 60
Query: 461 VTLHMRTHTG 470
+ H R H+G
Sbjct: 61 LKTHTRIHSG 70
Score = 38.2 bits (90), Expect = 3e-04
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 25 NLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIEIH-GADPFLCIPCNKPFSKIENY 83
+ H + C C F + LA+HK +H G P+ C C F++ N
Sbjct: 4 HHHHH-SHMTHSDKPYKCDRCQASFRYKGNLASHKT-VHTGEKPYRCNICGAQFNRPANL 61
Query: 84 RLHQR 88
+ H R
Sbjct: 62 KTHTR 66
Score = 29.0 bits (66), Expect = 0.59
Identities = 15/50 (30%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 251 CPYCAKFLSRKEKLNRHIRTVHTDVN-YKCEICGEEFLSKTRYNRHVVTH 299
C C K L H HT Y+C ICG +F H H
Sbjct: 20 CDRCQASFRYKGNLASHKTV-HTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 27.0 bits (61), Expect = 2.8
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 163 LKYYLTLHLRTHTGVRPMFECDICHKVLKTKS 194
+ ++ H +P ++CD C + K
Sbjct: 1 MGHHHHHHSHMTHSDKP-YKCDRCQASFRYKG 31
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 49.5 bits (119), Expect = 6e-08
Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 9/104 (8%)
Query: 369 SFARNCNLKLHIRRYHDKSDNTECPLCGKSFPSRGRLNEHLIQVHPAQK-HQCHI--CNK 425
S + R ++ + P C K + L HL + H +K ++C C+
Sbjct: 2 SSGSSGPDLEKRRIHY-----CDYPGCTKVYTKSSHLKAHL-RTHTGEKPYKCTWEGCDW 55
Query: 426 IVVSEKTLKKHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHT 469
L +H HT ++PF C C ++F ++ LHM+ H
Sbjct: 56 RFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 45.3 bits (108), Expect = 2e-06
Identities = 29/88 (32%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Query: 398 SFPSRGRLNEHLIQVHPAQKHQCHI--CNKIVVSEKTLKKHLLLHTNSEPFHC--PECGK 453
S S G E + H C C K+ LK HL HT +P+ C C
Sbjct: 2 SSGSSGPDLEK------RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDW 55
Query: 454 AFKFKRYVTLHMRTHTGNWPTFVCKICN 481
F +T H R HTG P F C +CN
Sbjct: 56 RFARSDELTRHYRKHTGAKP-FQCGVCN 82
Score = 41.5 bits (98), Expect = 4e-05
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 129 CGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHT 175
C +H + H+ KPF+C C ++F +L LH++ H
Sbjct: 53 CDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 38.0 bits (89), Expect = 7e-04
Identities = 29/132 (21%), Positives = 43/132 (32%), Gaps = 42/132 (31%)
Query: 145 LHSDDKPFECQF--CRKAFKLKYYLTLHLRTHTGVRPMFECDICHKVLKTKSKKSSGISK 202
+ C + C K + +L HLRTHTG +P ++C
Sbjct: 9 DLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKP-YKCTW----------------- 50
Query: 203 NENLRPCTLCDKKLASERKLKEHIRKQHPTSVEADLIRREKYEREKVQCPYCAKFLSRKE 262
CD + A +L H RK K QC C + SR +
Sbjct: 51 -------EGCDWRFARSDELTRHYRKH----------TGAK----PFQCGVCNRSFSRSD 89
Query: 263 KLNRHIRTVHTD 274
L H++ H +
Sbjct: 90 HLALHMKR-HQN 100
Score = 37.2 bits (87), Expect = 0.001
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 8/84 (9%)
Query: 309 CGYVTCNK-YRLTEHVR---RTHL--KDYKVLCPICGYGCFRNAELEEHFISAHSADR-F 361
C Y C K Y + H++ RTH K YK C + R+ EL H+ H+ + F
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTGAKPF 76
Query: 362 KCVFCEKSFARNCNLKLHIRRYHD 385
+C C +SF+R+ +L LH++R+ +
Sbjct: 77 QCGVCNRSFSRSDHLALHMKRHQN 100
Score = 36.8 bits (86), Expect = 0.002
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 366 CEKSFARNCNLKLHIRRYH--DKSDNTECPLCGKSFPSRGRLNEHLIQVHPAQK-HQCHI 422
C K + ++ +LK H+R H +K C F L H + H K QC +
Sbjct: 23 CTKVYTKSSHLKAHLRT-HTGEKPYKCTWEGCDWRFARSDELTRHY-RKHTGAKPFQCGV 80
Query: 423 CNKIVVSEKTLKKHLLLHTN 442
CN+ L H+ H N
Sbjct: 81 CNRSFSRSDHLALHMKRHQN 100
Score = 36.5 bits (85), Expect = 0.003
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 25 NLIMHIKRKHTDE--FSILCPECGRGFFNEKELAAHKIEIH-GADPFLCIPCNKPFSKIE 81
+L H R HT E + C F EL H H GA PF C CN+ FS+ +
Sbjct: 32 HLKAH-LRTHTGEKPYKCTWEGCDWRFARSDELTRHY-RKHTGAKPFQCGVCNRSFSRSD 89
Query: 82 NYRLHQRR 89
+ LH +R
Sbjct: 90 HLALHMKR 97
Score = 31.8 bits (73), Expect = 0.12
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 252 PYCAKFLSRKEKLNRHIRTVHTDV-NYKCEICGEEFLSKTRYNRHVVTHE 300
C +R ++L RH R HT ++C +C F H+ H+
Sbjct: 51 EGCDWRFARSDELTRHYRK-HTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 28.7 bits (65), Expect = 1.3
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 31 KRKHTDEFSILCPECGRGFFNEKELAAHKIEIH-GADPFLCIP--CNKPFSKIENYRLHQ 87
+R H ++ P C + + L AH H G P+ C C+ F++ + H
Sbjct: 13 RRIHYCDY----PGCTKVYTKSSHLKAHL-RTHTGEKPYKCTWEGCDWRFARSDELTRHY 67
Query: 88 RRYHLNSVNKECKICHKV-LRTARLSEHMK 116
R+ H + +C +C++ R+ L+ HMK
Sbjct: 68 RK-HTGAKPFQCGVCNRSFSRSDHLALHMK 96
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 48.6 bits (117), Expect = 8e-08
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+ + C CGK+ + KH + H+ +KP++C C KAF + +L H R HTG P
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 48.2 bits (116), Expect = 1e-07
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHK 188
+ + + ++C C K+F L+ H RTHTG +P ++CD C K
Sbjct: 8 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGK 54
Score = 44.7 bits (107), Expect = 2e-06
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 432 TLKKHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCKIC 480
+ + + C ECGK+F ++ H RTHTG P + C C
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDEC 52
Score = 43.2 bits (103), Expect = 6e-06
Identities = 21/53 (39%), Positives = 28/53 (52%)
Query: 418 HQCHICNKIVVSEKTLKKHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
++C C K L KH HT +P+ C ECGKAF + ++ H R HTG
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 36.3 bits (85), Expect = 0.002
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 25 NLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIEIH-GADPFLCIPCNKPFSKIENY 83
+ + + + C ECG+ F + +L+ H+ H G P+ C C K F + +
Sbjct: 5 SSGRS-EWQQRERRRYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSHL 62
Query: 84 RLHQR 88
H R
Sbjct: 63 IGHHR 67
Score = 31.6 bits (73), Expect = 0.071
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 361 FKCVFCEKSFARNCNLKLHIRRYHDKSDNTECPLCGKSFPSRGRLNEH 408
+KC C KSF+ + +L H RR H +C CGK+F R L H
Sbjct: 19 YKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 29.3 bits (67), Expect = 0.54
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 264 LNRHIRTVHTDVN-YKCEICGEEFLSKTRYNRHVVTHEEKQKFEC-ECGYVTCNKYRLTE 321
R + YKC+ CG+ F + ++H TH ++ ++C ECG + L
Sbjct: 6 SGRSEWQ-QRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIG 64
Query: 322 HVRRTH 327
H R H
Sbjct: 65 H-HRVH 69
Score = 27.4 bits (62), Expect = 2.1
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 250 QCPYCAKFLSRKEKLNRHIRTVHTDVN-YKCEICGEEFLSKTRYNRHVVTH 299
+C C K S L++H RT HT YKC+ CG+ F+ ++ H H
Sbjct: 20 KCDECGKSFSHSSDLSKHRRT-HTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 27.4 bits (62), Expect = 2.4
Identities = 6/28 (21%), Positives = 8/28 (28%), Gaps = 1/28 (3%)
Query: 167 LTLHLRTHTGVRPMFECDICHKVLKTKS 194
R ++CD C K S
Sbjct: 6 SGRSEWQQRERRR-YKCDECGKSFSHSS 32
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 46.8 bits (112), Expect = 2e-07
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ KP+ C C K F LK L +H R+HTGV+P
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP-SGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P+ C +C K F K + +H R+HTG
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTG 37
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 46.8 bits (112), Expect = 2e-07
Identities = 17/38 (44%), Positives = 20/38 (52%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
S +KP+EC C KAF K L +H RTH GV
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSG 40
Score = 42.9 bits (102), Expect = 3e-06
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
+ +P+ C ECGKAF +K + +H RTH G
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAG 37
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.7 bits (112), Expect = 2e-07
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECD 184
+ +KP+ C C KAF L +L HLR HT
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETL-SGPS 44
Score = 42.9 bits (102), Expect = 4e-06
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P+ C CGKAF ++ H+R HT
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQ 37
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.4 bits (111), Expect = 2e-07
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KP+ C C KAF K YL +H+RTH+G +P
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKP-SGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
+P+ C ECGKAF K Y+ +HMRTH+G
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSG 37
Score = 25.2 bits (56), Expect = 7.2
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 266 RHIRTVHTDVN-YKCEICGEEFLSKTRYNRHVVTHEEKQKFECECG 310
+ Y C CG+ F SK+ H+ TH ++ G
Sbjct: 2 SSGSS-GAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG 46
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 46.3 bits (111), Expect = 2e-07
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ KP+ C C KAF+ K YL +H RTHTG
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESG-PSS 43
Score = 44.4 bits (106), Expect = 9e-07
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P+ C ECGKAF+ K Y+ +H RTHTG
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTG 37
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 47.2 bits (113), Expect = 2e-07
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 122 KLFDCHICGKTVVTEKNYKKHM--QLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGV 177
+ C +C + N+ +H + K + C FC K F K +T H++ +
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 45.6 bits (109), Expect = 7e-07
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 418 HQCHICNKIVVSEKTLKKHL--LLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
++C +C+++ +H N + + CP C K F K +T H++
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 42.5 bits (101), Expect = 7e-06
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 146 HSDDKPFECQFCRKAFKLKYYLTLHLRT--HTGVRPMFECDICHK 188
+ + C+ C + + H T V+ + C C K
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKV-YPCPFCFK 48
Score = 38.3 bits (90), Expect = 2e-04
Identities = 6/44 (13%), Positives = 10/44 (22%), Gaps = 3/44 (6%)
Query: 440 HTNSEPFHCPECGKAFKFKRYVTLHMRT--HTGNWPTFVCKICN 481
+ C C + + H T + C C
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKV-YPCPFCF 47
Score = 38.3 bits (90), Expect = 3e-04
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 250 QCPYCAKFLSRKEKLNRHIRTV-HTDVN-YKCEICGEEFLSKTRYNRHVVTH 299
+C C++ + RH T +V Y C C +EF K HV
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 37.1 bits (87), Expect = 6e-04
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 30 IKRKHTDEFSILCPECGRGFFNEKELAAHKIEIH--GADPFLCIPCNKPFSKIENYRLHQ 87
++ E + C C R + + H + H + C C K F++ +N H
Sbjct: 1 MEFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Query: 88 RRYH 91
+ H
Sbjct: 61 KIIH 64
Score = 34.8 bits (81), Expect = 0.004
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 323 VRRTHL--KDYKVLCPICGYGCFRNAELEEHF-ISAHSADR-FKCVFCEKSFARNCNLKL 378
+ T Y+ C +C + H+ S + + C FC K F R N+
Sbjct: 1 MEFTKEGEHTYR--CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTA 58
Query: 379 HIRRYH 384
H++ H
Sbjct: 59 HVKIIH 64
Score = 31.4 bits (72), Expect = 0.069
Identities = 18/102 (17%), Positives = 29/102 (28%), Gaps = 41/102 (40%)
Query: 172 RTHTGVRPMFECDICHKVLKTKSKKSSGISKNENLRPCTLCDKKLASERKLKEHIRKQHP 231
T G + C +C +V S H H
Sbjct: 3 FTKEGEHT-YRCKVCSRVYTHISN--------------------------FCRHYVTSHK 35
Query: 232 TSVEADLIRREKYEREKV-QCPYCAKFLSRKEKLNRHIRTVH 272
+ KV CP+C K +RK+ + H++ +H
Sbjct: 36 RN-------------VKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 27.9 bits (63), Expect = 1.2
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 67 PFLCIPCNKPFSKIENYRLHQR-RYHLNSVNKECKICHKVL-RTARLSEHMKQVH 119
+ C C++ ++ I N+ H + N C C K R ++ H+K +H
Sbjct: 10 TYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 26.0 bits (58), Expect = 5.3
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 11 FSCSLCSYSVTIKRNLIMHIK-RKHTDEFSILCPECGRGF 49
+ C +CS T N H + CP C + F
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEF 50
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 46.7 bits (112), Expect = 2e-07
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHL-RTHTG 176
+ F C +C + +++ K+H + H+++KP+ C C +AF + L H + H+G
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 45.2 bits (108), Expect = 8e-07
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 150 KPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHK 188
+ F C+ C +AF + +L H R+HT +P + C +C++
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNR 38
Score = 42.9 bits (102), Expect = 5e-06
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 418 HQCHICNKIVVSEKTLKKHLLLHTNSEPFHCPECGKAFKFKRYVTLHM-RTHTGN 471
C +C + ++ LK+H HTN +P+ C C +AF + + H + H+GN
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 41.7 bits (99), Expect = 2e-05
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 445 PFHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCKIC 480
F C C +AF + ++ H R+HT P + C +C
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLC 36
Score = 30.5 bits (70), Expect = 0.13
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 335 CPICGYGCFRNAELEEHFISAHSADR-FKCVFCEKSFARNCNLKLHIRRYH 384
C +C R L+ H+ S H+ ++ + C C ++F R L H ++ H
Sbjct: 5 CEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 29.0 bits (66), Expect = 0.49
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 11 FSCSLCSYSVTIKRNLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIEIH 63
F C +C+ + + +L H R HT+E C C R F L H +IH
Sbjct: 3 FVCEVCTRAFARQEHLKRH-YRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 28.6 bits (65), Expect = 0.52
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 277 YKCEICGEEFLSKTRYNRHVVTHEEKQKFEC-ECGYVTCNKYRLTEHVRRTH 327
+ CE+C F + RH +H ++ + C C + L H ++ H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 46.0 bits (110), Expect = 3e-07
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KP+EC+ C KAF K +L H +THTG +P
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKP-SGP 43
Score = 41.7 bits (99), Expect = 9e-06
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P+ C C KAF K ++ H +THTG
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTG 37
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 46.4 bits (111), Expect = 3e-07
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHL-RTHTGVRPMFECDICHK 188
S KP+ CQ C K F +L H+ + HT RP +C +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERP-HKCQVWVS 49
Score = 40.3 bits (95), Expect = 4e-05
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 440 HTNSEPFHCPECGKAFKFKRYVTLHM-RTHTGNWPTFVCKICNATISS 486
+ +P+ C CGK F ++ H+ + HT P C++ + SS
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERP-HKCQVWVSGPSS 53
Score = 37.2 bits (87), Expect = 5e-04
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 354 SAHSADR-FKCVFCEKSFARNCNLKLHIRRYHDKSDNTECPLCGKSFPS 401
S+ S + + C C K F+R +L HI++ H +C + S
Sbjct: 5 SSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 36.4 bits (85), Expect = 0.001
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 251 CPYCAKFLSRKEKLNRHIRTVHT-DVNYKCEICGEEF 286
C C K SR + LN HI+ VHT + +KC++
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 33.3 bits (77), Expect = 0.011
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQ-LHSDDKPFECQFCRKAF 161
K + C CGK + H++ +H+ ++P +CQ
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 31.8 bits (73), Expect = 0.039
Identities = 14/65 (21%), Positives = 16/65 (24%), Gaps = 27/65 (41%)
Query: 391 ECPLCGKSFPSRGRLNEHLIQVHPAQKHQCHICNKIVVSEKTLKKHLLLHTNSEPFHCPE 450
C CGK F LN H+ QV HT+ P C
Sbjct: 14 ICQSCGKGFSRPDHLNGHIKQV---------------------------HTSERPHKCQV 46
Query: 451 CGKAF 455
Sbjct: 47 WVSGP 51
Score = 29.1 bits (66), Expect = 0.34
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 34 HTDEFSILCPECGRGFFNEKELAAHKIEIH-GADPFLCIPCNKPFS 78
+ +C CG+GF L H ++H P C S
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 28.7 bits (65), Expect = 0.57
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 9 EK-FSCSLCSYSVTIKRNLIMHIKRKHTDEFSILCPECGRGF 49
K + C C + +L HIK+ HT E C G
Sbjct: 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 26.4 bits (59), Expect = 3.1
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 329 KDYKVLCPICGYGCFRNAELEEHFISAHSADR-FKCVFCEKSFA 371
K Y C CG G R L H H+++R KC +
Sbjct: 11 KPYI--CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 4e-07
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
S KP+EC+ CRK F +L H R HTG R
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERS-SGP 43
Score = 40.2 bits (95), Expect = 3e-05
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 440 HTNSEPFHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCK 478
+ +P+ C EC K F ++ H R HTG
Sbjct: 7 GSGKKPYECKECRKTFIQIGHLNQHKRVHTGERS-SGPS 44
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 45.5 bits (109), Expect = 4e-07
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KP+EC C+KAF K L +H RTHTG
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESG-PSS 43
Score = 42.5 bits (101), Expect = 4e-06
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P+ C EC KAF K + +H RTHTG
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTG 37
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.6 bits (109), Expect = 4e-07
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
S +KP+ C C K F K L+ H RTHTG +P
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKP-SGP 43
Score = 42.5 bits (101), Expect = 4e-06
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
+ +P+ C ECGK F K ++ H RTHTG
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTG 37
Score = 26.3 bits (59), Expect = 2.9
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFEC 154
K + C+ CGKT + H + H+ +KP
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 5e-07
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ + P+EC C KAF KY L H RTH G +P
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKP-SGP 43
Score = 42.1 bits (100), Expect = 6e-06
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T P+ C ECGKAF K + H RTH G
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAG 37
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 5e-07
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ ++ +EC C KAF K L +H R HTG +P
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKP-SGP 43
Score = 42.9 bits (102), Expect = 4e-06
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T + C ECGKAF K + +H R HTG
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTG 37
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 45.2 bits (108), Expect = 5e-07
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +P+EC C KAFK K L H R+HTG +P
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKP-SGP 43
Score = 43.3 bits (103), Expect = 2e-06
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T P+ C ECGKAFK K + H R+HTG
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTG 37
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 45.2 bits (108), Expect = 6e-07
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KPFEC C K+F + L H R HTG +P
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKP-SGP 43
Score = 42.5 bits (101), Expect = 4e-06
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +PF C ECGK+F + H R HTG
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTG 37
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 45.2 bits (108), Expect = 6e-07
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ ++ +EC C KAF K L++H R H G +P
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKP-SGP 43
Score = 42.1 bits (100), Expect = 7e-06
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T + C ECGKAF K +++H R H G
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRG 37
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 7e-07
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KP++C C KAF K L +H ++HTG R
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERH-SGP 43
Score = 42.5 bits (101), Expect = 5e-06
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P+ C +CGKAF K + +H ++HTG
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTG 37
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 7e-07
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KP+EC C K+F K L +H R HTG P
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENP-SGP 43
Score = 41.8 bits (99), Expect = 9e-06
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P+ C +CGK+F K + +H R HTG
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTG 37
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 45.1 bits (106), Expect = 8e-07
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 126 CHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTG 176
C CG KKH++ H+D +P+ C +C +FK K LT H+++
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 42.8 bits (100), Expect = 5e-06
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 417 KHQCHICNKIVVSEKTLKKHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
K+ C C LKKH+ HT+ P+HC C +FK K +T HM++
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
Score = 32.8 bits (74), Expect = 0.018
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 251 CPYCAKFLSRKEKLNRHIRTVHTDVNYKCEICGEEFLSKTRYNRHVVTHE-EKQ 303
C C + L +HIRT Y C C F +K +H+ + K+
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 32.0 bits (72), Expect = 0.036
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 446 FHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCKICNATISSE 487
+ C ECG K + H+RTHT P + C CN + ++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTK 42
Score = 31.2 bits (70), Expect = 0.072
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 277 YKCEICGEEFLSKTRYNRHVVTHEEKQKFEC-ECGYVTCNKYRLTEHVR 324
Y CE CG + +H+ TH + + + C C + K LT+H++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 31.2 bits (70), Expect = 0.078
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 335 CPICGYGCFRNAELEEHFISAHSADRFKCVFCEKSFARNCNLKLHIRRY 383
C CG + + L++H + + C +C SF NL H++
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 30.8 bits (69), Expect = 0.11
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 152 FECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHKVLKTKS 194
+ C+ C K L H+RTHT VRP + C C+ KTK
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKG 43
Score = 30.5 bits (68), Expect = 0.13
Identities = 13/49 (26%), Positives = 15/49 (30%)
Query: 42 CPECGRGFFNEKELAAHKIEIHGADPFLCIPCNKPFSKIENYRLHQRRY 90
C ECG L H P+ C CN F N H +
Sbjct: 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 30.1 bits (67), Expect = 0.20
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 360 RFKCVFCEKSFARNCNLKLHIRRYHDKSDNTECPLCGKSFPSRGRLNEHL 409
++ C C + LK HIR H C C SF ++G L +H+
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRT-HTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 27.8 bits (61), Expect = 1.1
Identities = 15/50 (30%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 10 KFSCSLCSYSVTIKRNLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHK 59
K+ C C L HI R HTD C C F + L H
Sbjct: 1 KYICEECGIRXKKPSMLKKHI-RTHTDVRPYHCTYCNFSFKTKGNLTKHM 49
Score = 27.8 bits (61), Expect = 1.2
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 98 ECKICHK-VLRTARLSEHMKQVHYAKLFDCHICGKTVVTEKNYKKHMQLHSDDK 150
C+ C + + L +H++ + + C C + T+ N KHM+ + K
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 25.8 bits (56), Expect = 7.0
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 304 KFEC-ECGYVTCNKYRLTEHVRRTHLKDYKVLCPICGYGCFRNAELEEH 351
K+ C ECG L +H+R TH C C + L +H
Sbjct: 1 KYICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKH 48
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.8 bits (107), Expect = 9e-07
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KPFEC C+KAF K L +H RTHTG +P
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKP-SGP 43
Score = 42.9 bits (102), Expect = 4e-06
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +PF C EC KAF K + +H RTHTG
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTG 37
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.5 bits (106), Expect = 9e-07
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KP++C C KAF+ + L +H TH+G +P
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKP-SGP 43
Score = 42.5 bits (101), Expect = 5e-06
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P+ C ECGKAF+ + + +H TH+G
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSG 37
Score = 25.2 bits (56), Expect = 6.8
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFEC 154
K + C+ CGK + H HS +KP
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.5 bits (106), Expect = 9e-07
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KP+EC C K+F K L +H + HTG +P
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKP-SGP 43
Score = 41.0 bits (97), Expect = 2e-05
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P+ C CGK+F K + +H + HTG
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTG 37
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.4 bits (106), Expect = 9e-07
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KP+EC C KAF + L++H R H+G +P
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKP-SGP 43
Score = 41.3 bits (98), Expect = 1e-05
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P+ C CGKAF ++ +++H R H+G
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSG 37
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.4 bits (106), Expect = 1e-06
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECD 184
S +KP++C C K +K + L H R HTG +
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKL-SGPS 44
Score = 42.9 bits (102), Expect = 3e-06
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
+ +P+ C ECGK +K + + H R HTG
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTG 37
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.4 bits (106), Expect = 1e-06
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KP EC+ C K+F L +H R HTG P
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENP-SGP 43
Score = 42.5 bits (101), Expect = 5e-06
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P C ECGK+F F + +H R HTG
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTG 37
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.4 bits (106), Expect = 1e-06
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
S +KPF+C+ C KAF+ +L HLR HTG +P
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKP-SGP 43
Score = 40.9 bits (97), Expect = 2e-05
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
+ +PF C ECGKAF+ ++ H+R HTG
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTG 37
Score = 25.2 bits (56), Expect = 8.0
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFEC 154
K F C CGK + H+++H+ +KP
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 44.4 bits (106), Expect = 1e-06
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KPF+C C K++ + +LT H R HTG +P
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKP-SGP 43
Score = 41.7 bits (99), Expect = 8e-06
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +PF C ECGK++ + ++T H R HTG
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTG 37
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 44.5 bits (106), Expect = 1e-06
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
S K +C C + F LK +L H R HTG +P
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 42.1 bits (100), Expect = 6e-06
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
++++ C ECG+ F K ++ H R HTG
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTG 37
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.4 bits (106), Expect = 1e-06
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ KP++C C KAF L H R HTG +P
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKP-SGP 43
Score = 40.6 bits (96), Expect = 2e-05
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P+ C ECGKAF + H R HTG
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTG 37
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 44.4 bits (106), Expect = 1e-06
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+ + P+EC C K F K L H +TH+G
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSG 40
Score = 42.9 bits (102), Expect = 3e-06
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 440 HTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T P+ C ECGK F K + H +TH+G
Sbjct: 7 GTGENPYECCECGKVFSRKDQLVSHQKTHSG 37
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.5 bits (106), Expect = 1e-06
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
S +KPF+C+ C K F +L H R HTG +P
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKP-SGP 43
Score = 40.6 bits (96), Expect = 2e-05
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
+ +PF C ECGK F ++ H R HTG
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTG 37
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 44.1 bits (105), Expect = 1e-06
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KP +C C KAF K L +H RTH +
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKH-SGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 440 HTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P C ECGKAF +K + +H RTH
Sbjct: 7 GTGEKPCKCTECGKAFCWKSQLIMHQRTHVD 37
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 44.1 bits (105), Expect = 1e-06
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+ +KPF+C+ C F L HLR+H P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDP 40
Score = 41.4 bits (98), Expect = 1e-05
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 440 HTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +PF C ECG F + + H+R+H
Sbjct: 7 GTGEKPFQCKECGMNFSWSCSLFKHLRSHER 37
Score = 28.3 bits (64), Expect = 0.63
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFEC 154
K F C CG + KH++ H P
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 27.2 bits (61), Expect = 1.6
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 277 YKCEICGEEFLSKTRYNRHVVTHEEKQKFECECG 310
++C+ CG F +H+ +HE G
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTDPSGPSSG 46
Score = 26.0 bits (58), Expect = 3.2
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 361 FKCVFCEKSFARNCNLKLHIR 381
F+C C +F+ +C+L H+R
Sbjct: 13 FQCKECGMNFSWSCSLFKHLR 33
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 44.0 bits (105), Expect = 1e-06
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KPF+C C KAF L H R HTG +P
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP-SGP 43
Score = 41.7 bits (99), Expect = 1e-05
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +PF C +CGKAF + H R HTG
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTG 37
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 44.1 bits (105), Expect = 1e-06
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ KPFEC C K+F+ K L H R HTG +
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKS-GPS 43
Score = 41.8 bits (99), Expect = 8e-06
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +PF C CGK+F+ K + H R HTG
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTG 37
Score = 27.1 bits (61), Expect = 1.3
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFEC 154
K F+C CGK+ + N H ++H+ +K
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 44.0 bits (105), Expect = 1e-06
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 146 HSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
S + P+EC C KAF K L H RTH G
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTHAGESG-PSS 41
Score = 42.5 bits (101), Expect = 5e-06
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 440 HTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
+ P+ C ECGKAF K + H RTH G
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQRTHAG 35
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.1 bits (105), Expect = 1e-06
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KP++C+ C K + K+ L +H + HTG RP
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERP-SGP 43
Score = 41.7 bits (99), Expect = 1e-05
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P+ C +CGK + K + +H + HTG
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTG 37
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 44.1 bits (105), Expect = 1e-06
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP+ C C KAF K L +H+R HTG P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 41.8 bits (99), Expect = 7e-06
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTGNWP 473
+P+ C +CGKAF K + +H+R HTG+ P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 44.0 bits (105), Expect = 1e-06
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KP+EC+ C KAF +L H R HTG +P
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKP-SGP 43
Score = 40.6 bits (96), Expect = 3e-05
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P+ C ECGKAF ++ H R HTG
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTG 37
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.1 bits (105), Expect = 1e-06
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KP+EC C KAF ++ LT H HTG +P
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKP-SGP 43
Score = 41.4 bits (98), Expect = 1e-05
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P+ C +CGKAF + +T H HTG
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTG 37
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.1 bits (105), Expect = 1e-06
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP++C C K+F Y LT H THT +P
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKP 40
Score = 41.4 bits (98), Expect = 1e-05
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
+P+ C ECGK+F +T H THT
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTR 37
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 44.0 bits (105), Expect = 1e-06
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ K FEC C KAF K L++H + HTG +P
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKP-SGP 43
Score = 42.1 bits (100), Expect = 6e-06
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T + F C ECGKAF K +++H + HTG
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTG 37
Score = 25.2 bits (56), Expect = 6.4
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFEC 154
K F+C CGK + H ++H+ +KP
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 44.0 bits (105), Expect = 1e-06
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KPF+C C K F + L +H + HTG +P
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKP-SGP 43
Score = 42.5 bits (101), Expect = 5e-06
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +PF C ECGK F + + +H + HTG
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTG 37
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 44.0 bits (105), Expect = 1e-06
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
S +KP++C+ C K + + L +H R H G +
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKT 40
Score = 41.7 bits (99), Expect = 9e-06
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
+ +P+ C +CGK + + + +H R H G
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMG 37
Score = 25.1 bits (56), Expect = 8.0
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFEC 154
K + C CGK N H ++H +K
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 44.1 bits (105), Expect = 1e-06
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +K + C+ C K+F L H R H+G +P
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKP-SGP 43
Score = 41.7 bits (99), Expect = 8e-06
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T + ++C ECGK+F + H R H+G
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSG 37
Score = 25.6 bits (57), Expect = 6.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFEC 154
KL++C CGK+ KH +LHS +KP
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 43.7 bits (104), Expect = 2e-06
Identities = 11/38 (28%), Positives = 14/38 (36%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
S +K C C K F L +H R H G +
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKC 40
Score = 41.8 bits (99), Expect = 9e-06
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
+ + C ECGK F + + +H R H G
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMG 37
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 43.7 bits (104), Expect = 2e-06
Identities = 10/39 (25%), Positives = 13/39 (33%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
++ C C K F H R HTG +P
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 42.1 bits (100), Expect = 6e-06
Identities = 10/36 (27%), Positives = 11/36 (30%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
C +CGK F H R HTG
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTG 37
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 43.8 bits (104), Expect = 2e-06
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 142 HMQLHSDDKPFECQF--CRKAFKLKYYLTLHLRTHTGVRPMFECD 184
+ +KPF C + C F L+ H R+H+GV+P
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP-SGPS 46
Score = 36.1 bits (84), Expect = 8e-04
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 436 HLLLHTNSEPFHC--PECGKAFKFKRYVTLHMRTHTGNWPTFVC 477
T +PF C P CG F ++ H R+H+G P
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP-SGP 45
Score = 25.3 bits (56), Expect = 7.3
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 356 HSADR-FKCVF--CEKSFARNCNLKLHIR 381
+ ++ F C + C F+R+ L H R
Sbjct: 7 GTGEKPFACTWPGCGWRFSRSDELSRHRR 35
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.7 bits (104), Expect = 2e-06
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ K F+C C+K F LT+H R HTG +P
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKP-SGP 43
Score = 40.6 bits (96), Expect = 2e-05
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
+ F C EC K F +T+H R HTG
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTG 37
Score = 25.2 bits (56), Expect = 8.5
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFEC 154
KLF C+ C KT + H ++H+ +KP
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 43.7 bits (104), Expect = 2e-06
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
S ++PF+C C K F + +L HLR H+ +
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKS-SGP 43
Score = 41.0 bits (97), Expect = 2e-05
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
+ PF C ECGK F + ++ H+R H+
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSR 37
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.6 bits (104), Expect = 2e-06
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ + PF C C K F K L +H + HTG RP
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERP-SGP 43
Score = 41.3 bits (98), Expect = 1e-05
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T PF C ECGK F K + +H + HTG
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTG 37
Score = 25.5 bits (57), Expect = 5.4
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFEC 154
F C CGK + N H ++H+ ++P
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.6 bits (104), Expect = 2e-06
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
S +KP++C C KAF +L H R HTG RP
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRP-SGP 43
Score = 40.6 bits (96), Expect = 3e-05
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
+ +P+ C ECGKAF ++ H R HTG
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTG 37
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 43.7 bits (104), Expect = 2e-06
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +K ++C C K F L+ H + HTG +P
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKP-SGP 43
Score = 40.6 bits (96), Expect = 2e-05
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T + + C ECGK F ++ H + HTG
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTG 37
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 2e-06
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
S +KP+ C +C KAF L L H R HTG +P
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKP-SGP 43
Score = 41.0 bits (97), Expect = 2e-05
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
+ +P+ C CGKAF + H R HTG
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTG 37
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 43.3 bits (103), Expect = 2e-06
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTG 176
+D K + C C KAF ++LT H + HT
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTR 37
Score = 40.6 bits (96), Expect = 2e-05
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T+S+ ++C ECGKAF ++T H + HT
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTR 37
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 2e-06
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
S ++P+ C C K F +L HL+ H +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKS-SGP 43
Score = 41.0 bits (97), Expect = 2e-05
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
+ P+ C ECGK F ++ H++ H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFR 37
Score = 25.9 bits (58), Expect = 4.6
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 124 FDCHICGKTVVTEKNYKKHMQLHSDDKPFEC 154
+ C+ CGK + +H++ H +K
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 2e-06
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KP++C C K+F K L +H + HTG R
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERH-SGP 43
Score = 41.4 bits (98), Expect = 1e-05
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P+ C +CGK+F +K + +H + HTG
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTG 37
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 2e-06
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KP++C C K F +L H HTG +P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKP-SGP 43
Score = 40.6 bits (96), Expect = 2e-05
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P+ C ECGK F ++ H HTG
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTG 37
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 3e-06
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECD 184
+ +KPF+C C K+F + L H HT +P
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKP-SGPS 44
Score = 40.6 bits (96), Expect = 2e-05
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +PF C CGK+F + + H HT
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTA 37
Score = 29.8 bits (68), Expect = 0.19
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 277 YKCEICGEEFLSKTRYNRHVVTHEEKQKFECECG 310
+KC+ICG+ F ++R NRH + H ++ G
Sbjct: 13 FKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG 46
Score = 26.7 bits (60), Expect = 1.9
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 170 HLRTHTGVRPMFECDICHKVLKTKS 194
+ TG +P F+CDIC K +S
Sbjct: 3 SGSSGTGEKP-FKCDICGKSFCGRS 26
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 3e-06
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KP++C C KAF L H R HTG +P
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKP-SGP 43
Score = 41.0 bits (97), Expect = 2e-05
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P+ C ECGKAF + H R HTG
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTG 37
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 43.3 bits (103), Expect = 3e-06
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KP+EC CRKAF LT H R H+G +P
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKP-SGP 43
Score = 41.0 bits (97), Expect = 2e-05
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P+ C C KAF +T H R H+G
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSG 37
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 3e-06
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KP++C C K F +L H R HTGV+P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKP-SGP 43
Score = 40.2 bits (95), Expect = 3e-05
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P+ C ECGK F ++ H R HTG
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTG 37
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 3e-06
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KP++CQ C KAF++ +L H H+G RP
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERP-SGP 43
Score = 40.2 bits (95), Expect = 3e-05
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P+ C CGKAF+ ++ H H+G
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSG 37
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 42.9 bits (102), Expect = 3e-06
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ P++C C K+F K L +H R HT +P
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKP-SGP 43
Score = 39.8 bits (94), Expect = 5e-05
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 440 HTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
P+ C +C K+F K + +H R HT
Sbjct: 7 GAGVNPYKCSQCEKSFSGKLRLLVHQRMHTR 37
Score = 26.3 bits (59), Expect = 3.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 361 FKCVFCEKSFARNCNLKLHIR 381
+KC CEKSF+ L +H R
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQR 33
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 3e-06
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KP++C C K F +L H R HTG +P
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKP-SGP 43
Score = 39.8 bits (94), Expect = 4e-05
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P+ C ECGK F ++ H R HTG
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTG 37
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 42.9 bits (102), Expect = 3e-06
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP++C+ C F +L H+ HTG P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 40.6 bits (96), Expect = 2e-05
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
+P+ C CG F ++ H+ HTG
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTG 36
Score = 26.7 bits (60), Expect = 2.0
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 361 FKCVFCEKSFARNCNLKLHIR 381
+KC C F + +L+ H+
Sbjct: 12 YKCETCGARFVQVAHLRAHVL 32
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 42.9 bits (102), Expect = 4e-06
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 146 HSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
S + +ECQ C K+F+ K LTLH R HTG P
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 41.8 bits (99), Expect = 8e-06
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 440 HTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
+ + C ECGK+F+ K +TLH R HTG
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIHTG 35
Score = 24.8 bits (55), Expect = 7.7
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 391 ECPLCGKSFPSRGRLNEH 408
EC CGKSF +G L H
Sbjct: 12 ECQECGKSFRQKGSLTLH 29
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 4e-06
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KP+ C C K+F K +L H R HTG +P
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKP-SGP 43
Score = 42.1 bits (100), Expect = 7e-06
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTGNWP 473
T +P+ C ECGK+F K ++ H R HTG P
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 44.6 bits (105), Expect = 4e-06
Identities = 20/95 (21%), Positives = 30/95 (31%), Gaps = 22/95 (23%)
Query: 384 HDKSDNTECPLCGKSFPSRGRLNEHLIQVHPAQKHQ-CHICNKIVVSEKTLKKHLLLHTN 442
+ + C ++F + L H+ H Q H+C
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC------------------- 60
Query: 443 SEPFHCPECGKAFKFKRYVTLHMRTHTGNWPTFVC 477
CP GK+FK K + H+R HTG
Sbjct: 61 -YWEECPREGKSFKAKYKLVNHIRVHTGEKS-GPS 93
Score = 40.3 bits (94), Expect = 1e-04
Identities = 18/71 (25%), Positives = 23/71 (32%), Gaps = 10/71 (14%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQ-LHSDDKPF--------ECQFCRKAFKLKYYLTLHLR 172
C +T T H+ H EC K+FK KY L H+R
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR 83
Query: 173 THTGVRPMFEC 183
HTG +
Sbjct: 84 VHTGEKS-GPS 93
Score = 38.8 bits (90), Expect = 4e-04
Identities = 12/92 (13%), Positives = 27/92 (29%), Gaps = 19/92 (20%)
Query: 63 HGADPFLCIPCNKPFSKIENYRLHQRRYHLNSVNKECKICHKVLRTARLSEHMKQVHYAK 122
C++ FS + H H+ + +C+
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW------------------ 62
Query: 123 LFDCHICGKTVVTEKNYKKHMQLHSDDKPFEC 154
+C GK+ + H+++H+ +K
Sbjct: 63 -EECPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 34.6 bits (79), Expect = 0.010
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 361 FKCVFCEKSFARNCNLKLHIRRYHDKSDNT--------ECPLCGKSFPSRGRLNEHLIQV 412
C+++F+ L H+ H ECP GKSF ++ +L H I+V
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH-IRV 84
Query: 413 H 413
H
Sbjct: 85 H 85
Score = 31.9 bits (72), Expect = 0.084
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 200 ISKNENLRPCTLCDKKLASERKLKEHIRKQHPTSVEADLIRREKYEREKVQCPYCAKFLS 259
I + + RP CD+ ++ +L H+ +H + + +CP K
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEH-----VGGPEQNNHVCYWEECPREGKSFK 73
Query: 260 RKEKLNRHIRTVHT 273
K KL HIR HT
Sbjct: 74 AKYKLVNHIRV-HT 86
Score = 29.9 bits (67), Expect = 0.48
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 9/59 (15%)
Query: 250 QCPYCAKFLSRKEKLNRHIRTVHTDVNYK---------CEICGEEFLSKTRYNRHVVTH 299
C + S +L H+ H + C G+ F +K + H+ H
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Score = 28.8 bits (64), Expect = 1.1
Identities = 14/84 (16%), Positives = 23/84 (27%), Gaps = 20/84 (23%)
Query: 145 LHSDDKPFECQFCRKAFKLKYYLTLHL-RTHTGVRPMFECDICHKVLKTKSKKSSGISKN 203
+ + C + F + L H+ H G +C+
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPE-QNNHVCYW--------------- 62
Query: 204 ENLRPCTLCDKKLASERKLKEHIR 227
C K ++ KL HIR
Sbjct: 63 ---EECPREGKSFKAKYKLVNHIR 83
Score = 26.5 bits (58), Expect = 6.6
Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 11/62 (17%)
Query: 276 NYKCEICGEEFLSKTRYNRHV----VTHEEKQKFECE------CGYVTCNKYRLTEHVRR 325
+ + C F + HV V E+ C G KY+L H+ R
Sbjct: 25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI-R 83
Query: 326 TH 327
H
Sbjct: 84 VH 85
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.9 bits (102), Expect = 4e-06
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KP+ C+ C KAF L H R HTG +P
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKP-SGP 43
Score = 42.1 bits (100), Expect = 7e-06
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P++C ECGKAF + H R HTG
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTG 37
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 42.5 bits (101), Expect = 4e-06
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 440 HTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
+P+ C CG F+ + + H+R HTG
Sbjct: 6 SGGEKPYPCEICGTRFRHLQTLKSHLRIHTG 36
Score = 42.5 bits (101), Expect = 5e-06
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+KP+ C+ C F+ L HLR HTG P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 29.4 bits (67), Expect = 0.24
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 361 FKCVFCEKSFARNCNLKLHIR 381
+ C C F LK H+R
Sbjct: 12 YPCEICGTRFRHLQTLKSHLR 32
Score = 26.7 bits (60), Expect = 2.2
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPF 152
K + C ICG + K H+++H+ P
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 5e-06
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KP++C C K+F+ LT+H R HTG +P
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP-SGP 43
Score = 41.3 bits (98), Expect = 1e-05
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P+ C C K+F++ +T+H R HTG
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTG 37
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 5e-06
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ ++P +C C K+F +L H R HTG +P
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKP-SGP 43
Score = 39.8 bits (94), Expect = 5e-05
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTGNWP 473
T P C ECGK+F ++ H R HTG P
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 5e-06
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KP+ C C KAF K LT H R HTG +P
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKP-SGP 43
Score = 41.3 bits (98), Expect = 1e-05
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P+ C ECGKAF K +T H R HTG
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTG 37
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 6e-06
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KP++C C K F+ YL+ H R HTG +P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKP-SGP 43
Score = 41.7 bits (99), Expect = 8e-06
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P+ C ECGK F+ Y++ H R HTG
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTG 37
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 42.2 bits (100), Expect = 6e-06
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECD 184
S +KPF+C+ C K F H R+H+G +P
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKP-SGPS 44
Score = 41.0 bits (97), Expect = 2e-05
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
+ +PF C ECGK F H R+H+G
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSG 37
Score = 26.7 bits (60), Expect = 1.9
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 277 YKCEICGEEFLSKTRYNRHVVTHEEKQKFECECG 310
+KCE CG+ F + ++ H +H ++ G
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG 46
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 6e-06
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KP+ C C KAF ++ L H + HT +P
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKP-SGP 43
Score = 40.6 bits (96), Expect = 3e-05
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P+ C ECGKAF + + H + HT
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTK 37
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 7e-06
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ KP+ C C KAF + LT H HTG +P
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKP-SGP 43
Score = 41.0 bits (97), Expect = 2e-05
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P+ C ECGKAF +T H HTG
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTG 37
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 42.1 bits (100), Expect = 7e-06
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KP++C+ C K F + L H HTG +P
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKP-SGP 43
Score = 40.6 bits (96), Expect = 2e-05
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P+ C ECGK F +R + H HTG
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTG 37
Score = 25.2 bits (56), Expect = 6.8
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 277 YKCEICGEEFLSKTRYNRHVVTHEEKQKFECECG 310
YKCE CG+ F+ + H + H ++ G
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG 46
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 42.2 bits (100), Expect = 7e-06
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KP+ C+ C K+F+ L H R H+G +P
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKP-SGP 43
Score = 40.6 bits (96), Expect = 3e-05
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P++C ECGK+F++ + H R H+G
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSG 37
Score = 25.6 bits (57), Expect = 5.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFEC 154
K ++C CGK+ KH ++HS +KP
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 43.3 bits (103), Expect = 7e-06
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 417 KHQCHICNKIVVSEKTLKKHLLLHTNSEPFHC--PECGKAFKFKRYVTLHMRTHTGNWPT 474
C K LK HL HT +P+HC CG F +T H R HTG+ P
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP- 65
Query: 475 FVCKICN 481
F C+ C+
Sbjct: 66 FQCQKCD 72
Score = 42.5 bits (101), Expect = 2e-05
Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 31/111 (27%)
Query: 360 RFKCVFCEKSFARNCNLKLHIRRYH--DKSDNTECPLCGKSFPSRGRLNEHLIQVHPAQK 417
C K++ ++ +LK H+R H +K + + CG F
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRT-HTGEKPYHCDWDGCGWKFARSD-------------- 51
Query: 418 HQCHICNKIVVSEKTLKKHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTH 468
L +H HT PF C +C +AF ++ LHM+ H
Sbjct: 52 --------------ELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 39.4 bits (93), Expect = 2e-04
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 129 CGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTH 174
CG +H + H+ +PF+CQ C +AF +L LH++ H
Sbjct: 43 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 39.0 bits (92), Expect = 3e-04
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 440 HTNSEPFHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCK 478
T + CGK + ++ H+RTHTG P + C
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKP-YHCD 39
Score = 38.7 bits (91), Expect = 3e-04
Identities = 27/125 (21%), Positives = 39/125 (31%), Gaps = 39/125 (31%)
Query: 146 HSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHKVLKTKSKKSSGISKNEN 205
+ + C K + +L HLRTHTG +P + CD
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKP-YHCDWDG------------------ 42
Query: 206 LRPCTLCDKKLASERKLKEHIRKQHPTSVEADLIRREKYEREKVQCPYCAKFLSRKEKLN 265
C K A +L H RK + QC C + SR + L
Sbjct: 43 ------CGWKFARSDELTRHYRKH----------TGHR----PFQCQKCDRAFSRSDHLA 82
Query: 266 RHIRT 270
H++
Sbjct: 83 LHMKR 87
Score = 36.0 bits (84), Expect = 0.003
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 10 KFSCSLCSYSVTIKRNLIMHIKRKHTDE--FSILCPECGRGFFNEKELAAHKIEIH-GAD 66
+ C + T +L H R HT E + CG F EL H H G
Sbjct: 7 TCDYAGCGKTYTKSSHLKAH-LRTHTGEKPYHCDWDGCGWKFARSDELTRHY-RKHTGHR 64
Query: 67 PFLCIPCNKPFSKIENYRLHQRR 89
PF C C++ FS+ ++ LH +R
Sbjct: 65 PFQCQKCDRAFSRSDHLALHMKR 87
Score = 33.3 bits (77), Expect = 0.027
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 309 CGYVTCNK-YRLTEHVR---RTHL--KDYKVLCPICGYGCFRNAELEEHFISAHSADR-F 361
C Y C K Y + H++ RTH K Y CG+ R+ EL H+ H+ R F
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHRPF 66
Query: 362 KCVFCEKSFARNCNLKLHIRR 382
+C C+++F+R+ +L LH++R
Sbjct: 67 QCQKCDRAFSRSDHLALHMKR 87
Score = 32.5 bits (75), Expect = 0.043
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 33 KHTDEFSILCPECGRGFFNEKELAAHKIEIH-GADPFLC--IPCNKPFSKIENYRLHQRR 89
K T + CG+ + L AH H G P+ C C F++ + H R+
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHL-RTHTGEKPYHCDWDGCGWKFARSDELTRHYRK 59
Query: 90 YHLNSVNKECKICHKV-LRTARLSEHMK 116
H +C+ C + R+ L+ HMK
Sbjct: 60 -HTGHRPFQCQKCDRAFSRSDHLALHMK 86
Score = 30.6 bits (70), Expect = 0.21
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 252 PYCAKFLSRKEKLNRHIRTVHTDV-NYKCEICGEEFLSKTRYNRHVVTH 299
C +R ++L RH R HT ++C+ C F H+ H
Sbjct: 41 DGCGWKFARSDELTRHYRK-HTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 8e-06
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
S +KP++C C K F +LT H R HTG +P
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKP-SGP 43
Score = 39.4 bits (93), Expect = 6e-05
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
+ +P+ C ECGK F ++T H R HTG
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTG 37
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 8e-06
Identities = 79/553 (14%), Positives = 151/553 (27%), Gaps = 151/553 (27%)
Query: 1 MEHSQED-----TEKFSCSL-CSYSVTIKRNLIM-----HI-KRKHTDE-----FSILCP 43
++ +D + F + C + ++++ HI K F L
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 44 ECGRGFFNEKELAAHKIEIHGAD-PFLCIP----CNKPFSKIENYRLHQRRYHLNSVNKE 98
+ E+ + E+ + FL P +P Y + QR N
Sbjct: 74 K------QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY-IEQRDRLYNDNQVF 126
Query: 99 CKICHKVLRT---ARLSEHMKQVHYAKLFDCHI---CGKTVVTEKNYKKHMQLHSDDKPF 152
K + V R +L + + ++ AK GKT V
Sbjct: 127 AK--YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL--------SYKV 176
Query: 153 ECQFCRKAFKLKYYLTL-HLRTHTGVRPMFECDICHKVLKTKSKKSSGISKNENLRPCTL 211
+C+ K F +L L + + V M + + +++ + +S S N LR +
Sbjct: 177 QCKMDFKIF----WLNLKNCNSPETVLEMLQ-KLLYQIDPNWTSRSDH-SSNIKLR---I 227
Query: 212 CDKKLASERKLKEHIRKQHPTSVEADLIRREKYERE-----KVQCPYCAKFL--SRKEKL 264
+ R LK K + + L+ + + C K L +R +++
Sbjct: 228 HSIQAELRRLLKS---KPYENCL---LVLLNVQNAKAWNAFNLSC----KILLTTRFKQV 277
Query: 265 NRHIRTVHTDVNYKCEICGEEFLSKTRYNRHVVTHEE-KQKFECECGYVTCNKYRLTEHV 323
+ I + +T +E K Y+ C L V
Sbjct: 278 TDFL-----SAATTTHISLDHHSM-------TLTPDEVKSLLL---KYLDCRPQDLPREV 322
Query: 324 RRTHLKDYKVLCPICGYGCFRNAELEEHFISAHSADRFKCVFCEK------SFARNCNLK 377
T+ I + + + D +K V C+K S
Sbjct: 323 LTTNP----RRLSIIA------ESIRDG---LATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 378 LHIRRYHDKS---DNTECP----------------------LCGKSF----PSRGRLNEH 408
+ + + S + P L S P ++
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
Query: 409 LIQ----VHPAQKHQCHICNKIVVSEKTLKKHLLLHTNSEPFHCPECGKAFKFKRYVTLH 464
I V ++ H + +V + K P + + H
Sbjct: 430 SIYLELKVKLENEYALH---RSIVDHYNIPKTFDSDDLIPP---YLDQYFYSHIGH---H 480
Query: 465 MRT--HTGNWPTF 475
++ H F
Sbjct: 481 LKNIEHPERMTLF 493
Score = 41.0 bits (95), Expect = 9e-04
Identities = 55/384 (14%), Positives = 102/384 (26%), Gaps = 85/384 (22%)
Query: 63 HGADPFLCIPCNKPFS---KIENYRLHQRRYHLNSVNKECKICHKVLRTARLSEHMKQVH 119
+ DP + + +I + + RR + + C + VL + ++
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL---VLLNVQNAKA----- 258
Query: 120 YAKLFDCHICGKTVVTEKN----------YKKHMQLHSDDKPFECQFCRKAFKLKYYLTL 169
F+ C K ++T + H+ L + LKY L
Sbjct: 259 -WNAFNLS-C-KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-LKY---L 311
Query: 170 HLRTHT------GVRPMFECDICHKVLKTKSKKSSGISKNENLRPCTLCDKKL----ASE 219
R P I + ++ G++ +N + CDK +S
Sbjct: 312 DCRPQDLPREVLTTNP-RRLSIIAESIR------DGLATWDNWKH-VNCDKLTTIIESSL 363
Query: 220 RKLKEHIRKQH-------PTSV--EADLIRR-----EKYEREKVQCPYCAKFLSRKEKLN 265
L+ ++ P S L+ K + V L K+
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 266 RHIRTVHTDVNYKCEICGEEFLSKT---RYNRHVVTHEEKQKFECECGYV---------T 313
I + K ++ E L ++ YN + Y
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 314 CNKYRLTEHVRRTHLKDYKVL--------CPICGYGCFRN--AELE--EHFISAHSADRF 361
R L D++ L G N +L+ + +I +
Sbjct: 484 IEHPERMTLFRMVFL-DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 362 KCVFCEKSFARNCNLKLHIRRYHD 385
+ V F L +Y D
Sbjct: 543 RLVNAILDFLPKIEENLICSKYTD 566
Score = 40.2 bits (93), Expect = 0.001
Identities = 25/202 (12%), Positives = 61/202 (30%), Gaps = 30/202 (14%)
Query: 2 EHSQEDTEKFSCSLCSYSVTIKRNLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIE 61
+ + D L YS+ +++ + + E E A H+
Sbjct: 398 DVIKSDVMVVVNKLHKYSL-VEKQPKESTISIPSIYLELKVK-------LENEYALHRSI 449
Query: 62 IHGADPFLCIPCNKPF-SKIENYRLHQRRYHLNSVNKECKICHKVLRTARLSEHMKQVHY 120
+ + + ++ Y +HL ++ ++ + R L +
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM--TLFRMVFLDFRFLE--- 504
Query: 121 AKL----FDCHICGK---TVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRT 173
K+ + G T+ K YK ++ D+ P ++ R + +L +
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYI---CDNDP---KYERLVNAILDFL-PKIEE 557
Query: 174 HTGVRPMFECDICHKVLKTKSK 195
+ D+ L + +
Sbjct: 558 NLICSK--YTDLLRIALMAEDE 577
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 42.1 bits (100), Expect = 8e-06
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KP++C C K F+ +L H HTG +P
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKP-SGP 43
Score = 40.5 bits (96), Expect = 3e-05
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P+ C ECGK F+ ++ H HTG
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTG 37
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 8e-06
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+K ++C C K F +L H R HTG +P
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP-SGP 43
Score = 38.7 bits (91), Expect = 1e-04
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
+ + C CGK F ++ H R HTG
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 25.2 bits (56), Expect = 8.1
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFEC 154
K + C +CGK + + H ++H+ +KP
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 9e-06
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
S +KPF+C+ C K F L H R HTG +P
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKP-SGP 43
Score = 39.4 bits (93), Expect = 6e-05
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
+ +PF C ECGK F + H R HTG
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTG 37
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.7 bits (99), Expect = 9e-06
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ KP++C C K F +L H HTG +P
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKP-SGP 43
Score = 39.0 bits (92), Expect = 1e-04
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P+ C ECGK F ++ H HTG
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTG 37
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.8 bits (99), Expect = 1e-05
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KP++C C KAF T H R HTG RP
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRP-SGP 43
Score = 40.6 bits (96), Expect = 2e-05
Identities = 16/38 (42%), Positives = 18/38 (47%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTGNWP 473
T +P+ C ECGKAF T H R HTG P
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 41.4 bits (97), Expect = 1e-05
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTG 176
+ + PF+C C + F + YL H RTH
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHAR 37
Score = 38.7 bits (90), Expect = 1e-04
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
PF C +C + F + Y+ H RTH
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHAR 37
Score = 25.2 bits (55), Expect = 6.6
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 56 AAHKIEIHGADPFLCIPCNKPFSKIENYRLHQR 88
+ G +PF C C++ F++ H+R
Sbjct: 1 GSSGSSGAGENPFKCSKCDRVFTQRNYLVQHER 33
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.3 bits (98), Expect = 1e-05
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+ +KP++C C KAF+ LT H HTG +P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 41.0 bits (97), Expect = 2e-05
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P+ C ECGKAF+ +T H HTG
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTG 37
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 41.4 bits (98), Expect = 1e-05
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+K ++C+ C F L LH H G +P
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
Score = 39.4 bits (93), Expect = 6e-05
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 440 HTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
+ + C EC F + LH H G
Sbjct: 7 GMGEKTWKCRECDMCFSQASSLRLHQNVHVG 37
Score = 25.2 bits (56), Expect = 7.8
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 361 FKCVFCEKSFARNCNLKLHIR 381
+KC C+ F++ +L+LH
Sbjct: 13 WKCRECDMCFSQASSLRLHQN 33
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.3 bits (98), Expect = 1e-05
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ ++P+ C C KAF + L H + HTG +P
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKP-SGP 43
Score = 40.2 bits (95), Expect = 3e-05
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T P+ C CGKAF + + H + HTG
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTG 37
Score = 24.8 bits (55), Expect = 9.7
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQ 155
+ + C +CGK N KH ++H+ +KP
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 41.3 bits (98), Expect = 1e-05
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KP++C C K F +L H HTG +P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKP-SGP 43
Score = 39.4 bits (93), Expect = 6e-05
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P+ C ECGK F ++ H HTG
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTG 37
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 40.7 bits (96), Expect = 2e-05
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 440 HTNSEPFHCPECGKAFKFKRYVTLHMRTHTGNWP 473
P+ C +CGK+F + + +H R+ + + P
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGP 39
Score = 39.2 bits (92), Expect = 6e-05
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 146 HSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
+ P+ C C K+F + L +H R+ + P
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGP 39
Score = 26.5 bits (59), Expect = 2.6
Identities = 10/18 (55%), Positives = 10/18 (55%)
Query: 391 ECPLCGKSFPSRGRLNEH 408
C CGKSF RG L H
Sbjct: 13 LCGQCGKSFTQRGSLAVH 30
Score = 25.3 bits (56), Expect = 6.5
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPF 152
+ C CGK+ + H + S P
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 3e-05
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFEC 183
+ +KP+ C C KAF + L H + HTG +P
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKP-SGP 43
Score = 40.6 bits (96), Expect = 3e-05
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +P+ C ECGKAF + + H + HTG
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTG 37
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 41.1 bits (97), Expect = 3e-05
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 433 LKKHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHT 469
L +H+ +HT +PF C C + F ++T H+RTHT
Sbjct: 37 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 41.1 bits (97), Expect = 3e-05
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 140 KKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHT 175
+H+++H+ KPF+C+ C + F +LT H+RTHT
Sbjct: 38 TRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 40.0 bits (94), Expect = 9e-05
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 138 NYKKHMQLHSDDKPFEC--QFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHK 188
N ++ +P+ C + C + F LT H+R HTG +P F+C IC +
Sbjct: 8 NLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMR 57
Score = 39.6 bits (93), Expect = 1e-04
Identities = 15/59 (25%), Positives = 24/59 (40%)
Query: 324 RRTHLKDYKVLCPICGYGCFRNAELEEHFISAHSADRFKCVFCEKSFARNCNLKLHIRR 382
++ Y C R+ EL H F+C C ++F+R+ +L HIR
Sbjct: 13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
Score = 34.6 bits (80), Expect = 0.007
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 433 LKKHLLLHTNSEPFHCP--ECGKAFKFKRYVTLHMRTHTGNWPTFVCKICN 481
L ++ P+ CP C + F +T H+R HTG P F C+IC
Sbjct: 9 LLNYV--VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICM 56
Score = 32.3 bits (74), Expect = 0.038
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 361 FKCV--FCEKSFARNCNLKLHIRRYHDKSDNTECPLCGKSFPSRGRLNEHL 409
+ C C++ F+R+ L HIR H +C +C ++F L H+
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHI 69
Score = 31.5 bits (72), Expect = 0.069
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 252 PYCAKFLSRKEKLNRHIRTVHTDVN-YKCEICGEEFLSKTRYNRHVVTH 299
C + SR ++L RHIR HT ++C IC F H+ TH
Sbjct: 25 ESCDRRFSRSDELTRHIRI-HTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 31.5 bits (72), Expect = 0.076
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 43 PECGRGFFNEKELAAHKIEIHGADPFLCIPCNKPFSKIENYRLHQRR 89
C R F EL H G PF C C + FS+ ++ H R
Sbjct: 25 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 39.6 bits (93), Expect = 4e-05
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 440 HTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
+ +P+ C EC + F + H + HT
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTV 35
Score = 38.1 bits (89), Expect = 2e-04
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 146 HSDDKPFECQFCRKAFKLKYYLTLHLRTHTG 176
S +KP+ C C++ F L H + HT
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTV 35
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 39.5 bits (93), Expect = 7e-05
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLR-THTGVRPMFEC 183
+ KP+EC C KAF L H R HTG +P
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKP-SGP 44
Score = 36.8 bits (86), Expect = 6e-04
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMR-THTGNWP 473
T +P+ C ECGKAF + H R HTG P
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
Score = 27.1 bits (61), Expect = 1.5
Identities = 11/41 (26%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 31 KRKHTDEFSILCPECGRGFFNEKELAAHKIEIH-GADPFLC 70
T + C ECG+ F L H H G P
Sbjct: 4 GSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 25.2 bits (56), Expect = 8.4
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 56 AAHKIEIH-GADPFLCIPCNKPFSKIENYRLHQRRYH 91
+ G P+ CI C K F + + H R YH
Sbjct: 1 GSSG-SSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 39.9 bits (92), Expect = 2e-04
Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 4/88 (4%)
Query: 349 EEHFISAHSADRFKCVFCEKSFARNCNLKLHIRRYHDKSDNTECPLCGKSFPSRGRLNEH 408
+ + ++C C + H R + CP C F S EH
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR---NAAVCPYCSLRFFSPELKQEH 61
Query: 409 LIQVHPAQKHQCHICNKIVVSEKTLKKH 436
+ +K C C + S ++ +H
Sbjct: 62 ESK-CEYKKLTCLECMRTFKSSFSIWRH 88
Score = 38.3 bits (88), Expect = 6e-04
Identities = 19/85 (22%), Positives = 27/85 (31%), Gaps = 2/85 (2%)
Query: 246 REKVQCPYCAKFLSRKEKLNRHIRTVHTDVNYKCEICGEEFLSKTRYNRHVVTHEEKQKF 305
+E QC C LS + H R C C F S H E K+
Sbjct: 14 KEVYQCRLCNAKLSSLLEQGSHERLCRN--AAVCPYCSLRFFSPELKQEHESKCEYKKLT 71
Query: 306 ECECGYVTCNKYRLTEHVRRTHLKD 330
EC + + + H H ++
Sbjct: 72 CLECMRTFKSSFSIWRHQVEVHNQN 96
Score = 38.0 bits (87), Expect = 0.001
Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 4/86 (4%)
Query: 6 EDTEKFSCSLCSYSVTIKRNLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIEIHGA 65
E+ E + C LC+ ++ H + + +CP C FF+ + H+ +
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHERLCRN---AAVCPYCSLRFFSPELKQEHESK-CEY 67
Query: 66 DPFLCIPCNKPFSKIENYRLHQRRYH 91
C+ C + F + HQ H
Sbjct: 68 KKLTCLECMRTFKSSFSIWRHQVEVH 93
Score = 36.4 bits (83), Expect = 0.003
Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 15/100 (15%)
Query: 174 HTGVRPMFECDICHKVLKTKSKKSSGISKNENLRPCTLCDKKLASERKLKEHIRKQHPTS 233
+ +++C +C+ L + ++ S N C C + S +EH
Sbjct: 10 PVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEH-------- 61
Query: 234 VEADLIRREKYEREKVQCPYCAKFLSRKEKLNRHIRTVHT 273
K E +K+ C C + + RH VH
Sbjct: 62 -------ESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHN 94
Score = 35.3 bits (80), Expect = 0.009
Identities = 13/86 (15%), Positives = 26/86 (30%), Gaps = 4/86 (4%)
Query: 109 ARLSEHMKQVHYAKLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLT 168
+ S V +++ C +C + + H +L + C +C F
Sbjct: 2 SSGSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQ 59
Query: 169 LHLRTHTGVRPMFECDICHKVLKTKS 194
H + C C + K+
Sbjct: 60 EHESKCEYKK--LTCLECMRTFKSSF 83
Score = 34.9 bits (79), Expect = 0.012
Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 3/74 (4%)
Query: 391 ECPLCGKSFPSRGRLNEHLIQVHPAQKHQCHICNKIVVSEKTLKKHLLLHTNSEPFHCPE 450
+C LC S H A C C+ S + ++H + C E
Sbjct: 18 QCRLCNAKLSSLLEQGSHERLCRNAA--VCPYCSLRFFSPELKQEHES-KCEYKKLTCLE 74
Query: 451 CGKAFKFKRYVTLH 464
C + FK + H
Sbjct: 75 CMRTFKSSFSIWRH 88
Score = 33.7 bits (76), Expect = 0.031
Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 3/86 (3%)
Query: 57 AHKIEIHGADPFLCIPCNKPFSKIENYRLHQRRYHLNSVNKECKICHKVLRTARLSEHMK 116
+ + + + C CN S + H+R +V C C + L + +
Sbjct: 6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAV---CPYCSLRFFSPELKQEHE 62
Query: 117 QVHYAKLFDCHICGKTVVTEKNYKKH 142
K C C +T + + +H
Sbjct: 63 SKCEYKKLTCLECMRTFKSSFSIWRH 88
Score = 33.0 bits (74), Expect = 0.047
Identities = 18/80 (22%), Positives = 23/80 (28%), Gaps = 4/80 (5%)
Query: 407 EHLIQVHPAQKHQCHICNKIVVSEKTLKKHLLLHTNSEPFHCPECGKAFKFKRYVTLHMR 466
V + +QC +CN + S H L N+ CP C F H
Sbjct: 6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEHES 63
Query: 467 THTGNWPTFVCKICNATISS 486
C C T S
Sbjct: 64 KCEYK--KLTCLECMRTFKS 81
Score = 31.4 bits (70), Expect = 0.19
Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 4/79 (5%)
Query: 335 CPICGYGCFRNAELEEHFISAHSADRFKCVFCEKSFARNCNLKLHIRRYHDKSDNTECPL 394
C +C E H +A C +C F + H + C
Sbjct: 19 CRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEH--ESKCEYKKLTCLE 74
Query: 395 CGKSFPSRGRLNEHLIQVH 413
C ++F S + H ++VH
Sbjct: 75 CMRTFKSSFSIWRHQVEVH 93
Score = 31.4 bits (70), Expect = 0.20
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 308 ECGYVTCNKYRLTEHVRRTHLKDYKVLCPICGYGCFRNAELEEHFISAHSADRFKCVFCE 367
+C L E L +CP C F + EL++ S + C+ C
Sbjct: 18 QCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLR-FFSPELKQEHESKCEYKKLTCLECM 76
Query: 368 KSFARNCNLKLHIRRYHDK 386
++F + ++ H H++
Sbjct: 77 RTFKSSFSIWRHQVEVHNQ 95
Score = 30.6 bits (68), Expect = 0.33
Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 4/84 (4%)
Query: 148 DDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHKVLKTKSKKSSGISKNENLR 207
+ + ++C+ C H R R C C + K SK E +
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLC---RNAAVCPYCSLRFFSPELKQEHESKCEYKK 69
Query: 208 -PCTLCDKKLASERKLKEHIRKQH 230
C C + S + H + H
Sbjct: 70 LTCLECMRTFKSSFSIWRHQVEVH 93
Score = 30.6 bits (68), Expect = 0.37
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 98 ECKICHKVLRTA-RLSEHMKQVHYAKLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQF 156
+C++C+ L + H + A C C + + ++H + K C
Sbjct: 18 QCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEHES-KCEYKKLTCLE 74
Query: 157 CRKAFKLKYYLTLH 170
C + FK + + H
Sbjct: 75 CMRTFKSSFSIWRH 88
Score = 29.9 bits (66), Expect = 0.61
Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 5/94 (5%)
Query: 267 HIRTVHTDVNYKCEICGEEFLSKTRYNRHVVTHEEKQKFECE-CGYVTCNKYRLTEHVRR 325
V Y+C +C + S H C C + EH
Sbjct: 7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRN--AAVCPYCSLRFFSPELKQEH--E 62
Query: 326 THLKDYKVLCPICGYGCFRNAELEEHFISAHSAD 359
+ + K+ C C + + H + H+ +
Sbjct: 63 SKCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQN 96
Score = 28.3 bits (62), Expect = 2.2
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 3 HSQEDTEKFSCSLCSYSVTIKRNLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIEI 62
H + C CS H + + C EC R F + + H++E+
Sbjct: 35 HERLCRNAAVCPYCSLRFFSPELKQEH--ESKCEYKKLTCLECMRTFKSSFSIWRHQVEV 92
Query: 63 HGAD 66
H +
Sbjct: 93 HNQN 96
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 38.0 bits (88), Expect = 2e-04
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 146 HSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDIC 186
K C+ C K F+ Y+L H +H+G +P +
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKP-YSSGPS 46
Score = 32.6 bits (74), Expect = 0.017
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 445 PFHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCKICNA 482
C CGK F+ ++ H +H+G P + +
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKP-YSSGPSSG 48
Score = 32.6 bits (74), Expect = 0.020
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFC 157
K C ICGK + +H HS +KP+
Sbjct: 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 31.1 bits (70), Expect = 0.064
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 417 KHQCHICNKIVVSEKTLKKHLLLHTNSEPFHCPEC 451
+ C IC KI L +H L H+ +P+
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 27.2 bits (60), Expect = 1.5
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 276 NYKCEICGEEFLSKTRYNRHVVTHEEKQKFEC 307
CEICG+ F NRH ++H ++ +
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSS 43
Score = 25.7 bits (56), Expect = 5.9
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 241 REKYEREKVQCPYCAKFLSRKEKLNRHIRTVHTD 274
R++V C C K LNRH + H+
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLS-HSG 37
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 38.5 bits (90), Expect = 3e-04
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 140 KKHMQLHSDDKPFECQF--CRKAFKLKYYLTLHLRTHTGVRPMFECD 184
S + C C K + +L H RTHTG +P F C
Sbjct: 6 SGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKP-FSCS 51
Score = 38.1 bits (89), Expect = 4e-04
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 122 KLFDCHI--CGKTVVTEKNYKKHMQLHSDDKPFECQF--CRKAFKLKYYLTLHLRTH 174
+ C CGKT + K H + H+ +KPF C + C + F L+ H RTH
Sbjct: 16 RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 35.4 bits (82), Expect = 0.003
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 417 KHQCHI--CNKIVVSEKTLKKHLLLHTNSEPFHC--PECGKAFKFKRYVTLHMRTH 468
H C C K LK H HT +PF C C + F ++ H RTH
Sbjct: 17 SHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 34.3 bits (79), Expect = 0.008
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 431 KTLKKHLLLHTNSEPFHC--PECGKAFKFKRYVTLHMRTHTGNWPTFVC 477
+ + C P CGK + ++ H RTHTG P F C
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKP-FSC 50
Score = 25.8 bits (57), Expect = 8.8
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 324 RRTHLKDYKVLCPI--CGYGCFRNAELEEHFISAHSADR-FKCVF--CEKSFARNCNLKL 378
+ + +C CG F+++ L+ H H+ ++ F C + CE+ FAR+ L
Sbjct: 9 QIDSSRIRSHICSHPGCGKTYFKSSHLKAH-TRTHTGEKPFSCSWKGCERRFARSDELSR 67
Query: 379 HIRR 382
H R
Sbjct: 68 HRRT 71
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 36.9 bits (86), Expect = 4e-04
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTH 468
T +PF CP+C ++F ++ LH + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 36.5 bits (85), Expect = 5e-04
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGV 177
+ + KPF+C C ++F +L LH + H V
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37
Score = 29.2 bits (66), Expect = 0.19
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 360 RFKCVFCEKSFARNCNLKLHIRR 382
F+C C++SF+R+ +L LH +R
Sbjct: 11 PFQCPDCDRSFSRSDHLALHRKR 33
Score = 28.1 bits (63), Expect = 0.58
Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 170 HLRTHTGVRPMFECDICHK 188
R TG++P F+C C +
Sbjct: 2 STRGSTGIKP-FQCPDCDR 19
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 36.0 bits (82), Expect = 0.001
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 146 HSDDKPFECQFCRKAFKLKYYLTLHLRTHTG 176
S +KP+ C C FK K ++ H+R+H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 32.2 bits (72), Expect = 0.029
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 440 HTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
+ +P+ CP CG FK K ++ H+R+H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 26.0 bits (56), Expect = 4.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 277 YKCEICGEEFLSKTRYNRHVVTHE 300
Y C +CG F K R + HV +H+
Sbjct: 11 YSCPVCGLRFKRKDRMSYHVRSHD 34
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 36.6 bits (84), Expect = 0.001
Identities = 11/73 (15%), Positives = 20/73 (27%), Gaps = 7/73 (9%)
Query: 107 RTARLSEHMKQVHYAKLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYY 166
+ + K + C CG + + K C+ CRK +
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAA 54
Query: 167 LTLHLRTHTGVRP 179
L +G +
Sbjct: 55 LNKDEGNESGKKT 67
Score = 31.2 bits (70), Expect = 0.12
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 9/71 (12%)
Query: 401 SRGRLNEHLIQVHPAQK-HQCHICNKIVVSEKTLKKHLLLHTNSEPFHCPECGKAFKFKR 459
S G + ++H + +C C I + TL + + C +C K +
Sbjct: 2 SSGSSGKRQ-KIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEA 53
Query: 460 YVTLHMRTHTG 470
+ +G
Sbjct: 54 ALNKDEGNESG 64
Score = 29.2 bits (65), Expect = 0.57
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 7/58 (12%)
Query: 31 KRKHTDEFSILCPECGRGFFNEKELAAHKIEIHGADPFLCIPCNKPFSKIENYRLHQR 88
++ H + S C +CG F L+ K +C C K + +
Sbjct: 10 QKIHLGDRSQKCSKCGIIFIRRSTLSRRK-------TPMCEKCRKDSCQEAALNKDEG 60
Score = 26.9 bits (59), Expect = 3.0
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 7/66 (10%)
Query: 381 RRYHDKSDNTECPLCGKSFPSRGRLNEHLIQVHPAQKHQCHICNKIVVSEKTLKKHLLLH 440
++ H + +C CG F R L+ + C C K E L K
Sbjct: 10 QKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNKDEGNE 62
Query: 441 TNSEPF 446
+ +
Sbjct: 63 SGKKTS 68
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 0.002
Identities = 35/195 (17%), Positives = 50/195 (25%), Gaps = 79/195 (40%)
Query: 326 THLKDYKVLCPICGYGCFRNAELEEHF--ISAHSADRFKCVFC-----EKSFARNCNLKL 378
L Y V + G+ EL + + HS V +SF + +
Sbjct: 244 IQLAHYVVTAKLLGF---TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI 300
Query: 379 HI-----RRYHDKSDNTECPL--------CGKSFPS-----RG-----------RLNEHL 409
+ R ++ NT P + PS + N HL
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 410 IQVHPAQKHQCHI--CN---KIVVS---------EKTLKK-----------------HLL 438
PA K I N +VVS TL+K L
Sbjct: 361 ----PAGKQ-VEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK 415
Query: 439 LHTN----SEPFHCP 449
+ PFH
Sbjct: 416 FSNRFLPVASPFHSH 430
Score = 29.2 bits (65), Expect = 3.9
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 11/74 (14%)
Query: 225 HIRKQHPTSV------EADLIRREKYEREKVQCPYCAKFLSRKEKLNRHIRTVHTDVNYK 278
I +P ++ E RE Y + + EK+ + I T ++
Sbjct: 1663 DIVINNPVNLTIHFGGEKGKRIRENYS--AMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720
Query: 279 CEICGEEFLSKTRY 292
E + LS T++
Sbjct: 1721 SE---KGLLSATQF 1731
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 37.6 bits (86), Expect = 0.002
Identities = 16/108 (14%), Positives = 28/108 (25%), Gaps = 4/108 (3%)
Query: 361 FKCVFCEKSFARNCNLKLHIRRYHDKSDNTECPLCGKSFPSRGRLNEHLIQVHPAQKHQC 420
+ R L +R + + L+ + C
Sbjct: 20 IFIHVTLEELKRYHQLTPEQKRLI--RAIVKTLIHNPQLLDESSYLYRLLASKAISQFVC 77
Query: 421 HICNKIVVSEKTLKKHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTH 468
+C S +LK+H+ + CP C K F H+
Sbjct: 78 PLCLMPFSSSVSLKQHIRYTEH--TKVCPVCKKEFTSTDSALDHVCKK 123
Score = 36.8 bits (84), Expect = 0.003
Identities = 12/91 (13%), Positives = 31/91 (34%), Gaps = 2/91 (2%)
Query: 84 RLHQRRYHLNSVNKECKICHKVLRTARLSEHMKQVHYAKLFDCHICGKTVVTEKNYKKHM 143
+++ + ++ K ++L + + F C +C + + K+H+
Sbjct: 35 LTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHI 94
Query: 144 QLHSDDKPFECQFCRKAFKLKYYLTLHLRTH 174
+ + C C+K F H+
Sbjct: 95 RYT--EHTKVCPVCKKEFTSTDSALDHVCKK 123
Score = 34.1 bits (77), Expect = 0.028
Identities = 17/115 (14%), Positives = 36/115 (31%), Gaps = 3/115 (2%)
Query: 214 KKLASERKLKEHIRKQHPTSVEADLIRREKYEREKVQCPYCAKFLSRKEKLNRHIRTVHT 273
K L++ + + H+ + +++ R V+ L + +
Sbjct: 12 KYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKA 71
Query: 274 DVNYKCEICGEEFLSKTRYNRHVVTHEEKQKFECE-CGYVTCNKYRLTEHVRRTH 327
+ C +C F S +H+ E C C + +HV + H
Sbjct: 72 ISQFVCPLCLMPFSSSVSLKQHIRYTE--HTKVCPVCKKEFTSTDSALDHVCKKH 124
Score = 33.0 bits (74), Expect = 0.074
Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 11/111 (9%)
Query: 278 KCEICGEEFLSKTRYNRHVVTHEEKQKFECECGYVTCNKYRLTEHVRRTHLKDYKV---- 333
+ EE H +T E+K+ + N L E L K
Sbjct: 21 FIHVTLEELKRY-----HQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQF 75
Query: 334 LCPICGYGCFRNAELEEHFISAHSADRFKCVFCEKSFARNCNLKLHIRRYH 384
+CP+C + L++H C C+K F + H+ + H
Sbjct: 76 VCPLCLMPFSSSVSLKQHIRYTEHT--KVCPVCKKEFTSTDSALDHVCKKH 124
Score = 32.2 bits (72), Expect = 0.12
Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 4/72 (5%)
Query: 49 FFNEKELAAHKIEIHGADPFLCIPCNKPFSKIENYRLHQRRYHLNSVNKECKICHKVLRT 108
+E + F+C C PFS + + H R K C +C K +
Sbjct: 56 LLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE---HTKVCPVCKKEFTS 112
Query: 109 AR-LSEHMKQVH 119
+H+ + H
Sbjct: 113 TDSALDHVCKKH 124
Score = 32.2 bits (72), Expect = 0.13
Identities = 21/143 (14%), Positives = 41/143 (28%), Gaps = 29/143 (20%)
Query: 88 RRYHLNSVNKECKICHKVLRTARLSEHMKQVHYAKLFDCHICGKTVVTEKNYKKHMQLHS 147
++Y N + + L+ ++ + I ++ E +Y +
Sbjct: 11 KKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASK 70
Query: 148 DDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHKVLKTKSKKSSGISKNENLR 207
F C C F L H+R E+ +
Sbjct: 71 AISQFVCPLCLMPFSSSVSLKQHIRYT-----------------------------EHTK 101
Query: 208 PCTLCDKKLASERKLKEHIRKQH 230
C +C K+ S +H+ K+H
Sbjct: 102 VCPVCKKEFTSTDSALDHVCKKH 124
Score = 31.4 bits (70), Expect = 0.27
Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 422 ICNKIVVSEKTLKKHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTGNWPTFVCKICN 481
I N ++ E + LL F CP C F + H+R T VC +C
Sbjct: 51 IHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEH---TKVCPVCK 107
Query: 482 ATISSE 487
+S
Sbjct: 108 KEFTST 113
Score = 29.1 bits (64), Expect = 1.6
Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 16/66 (24%)
Query: 208 PCTLCDKKLASERKLKEHIRKQHPTSVEADLIRREKYEREKVQCPYCAKFLSRKEKLNRH 267
C LC +S LK+HIR Y CP C K + + H
Sbjct: 76 VCPLCLMPFSSSVSLKQHIR----------------YTEHTKVCPVCKKEFTSTDSALDH 119
Query: 268 IRTVHT 273
+ H
Sbjct: 120 VCKKHN 125
Score = 28.7 bits (63), Expect = 2.3
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 1 MEHSQEDTEKFSCSLCSYSVTIKRNLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKI 60
+ + +F C LC + +L HI+ E + +CP C + F + H
Sbjct: 65 RLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT---EHTKVCPVCKKEFTSTDSALDHVC 121
Query: 61 EIHG 64
+ H
Sbjct: 122 KKHN 125
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 39.1 bits (90), Expect = 0.003
Identities = 7/59 (11%), Positives = 14/59 (23%)
Query: 410 IQVHPAQKHQCHICNKIVVSEKTLKKHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTH 468
P + IV ++ + C C + H+ +H
Sbjct: 145 SNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 37.9 bits (87), Expect = 0.008
Identities = 11/86 (12%), Positives = 23/86 (26%), Gaps = 3/86 (3%)
Query: 214 KKLASERKLKEHIRKQHPTSVEADLIRREKYEREKVQCPYCAKFLSRKEKLNRHIRTVHT 273
+ + + E ++ R +S+ T +
Sbjct: 121 TYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATS---AIVSKHPARVGLPPTASS 177
Query: 274 DVNYKCEICGEEFLSKTRYNRHVVTH 299
Y+C +C S + HV +H
Sbjct: 178 GHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 36.4 bits (83), Expect = 0.023
Identities = 7/49 (14%), Positives = 11/49 (22%)
Query: 126 CHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTH 174
V S ++C C L H+ +H
Sbjct: 155 AEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 31.7 bits (71), Expect = 0.74
Identities = 6/32 (18%), Positives = 10/32 (31%), Gaps = 1/32 (3%)
Query: 382 RYHDKSDNTECPLCGKSFPSRGRLNEHLIQVH 413
+C +C S L+ H+ H
Sbjct: 173 PTASSGHGYQCHVCSAVLFSPLDLDAHV-ASH 203
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 35.9 bits (82), Expect = 0.004
Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 4/76 (5%)
Query: 321 EHVRRTHLKDYKVLCPICGYGCFRNAELEEHFISAHSADR----FKCVFCEKSFARNCNL 376
H ++ + C C + H S H + CV C R L
Sbjct: 7 HHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDAL 66
Query: 377 KLHIRRYHDKSDNTEC 392
H +YH +N +
Sbjct: 67 SEHNLKYHPGEENFKL 82
Score = 32.8 bits (74), Expect = 0.050
Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 3/77 (3%)
Query: 3 HSQEDTEKFSCSLCSYSVTIKRNLIMHIKRKHTD---EFSILCPECGRGFFNEKELAAHK 59
+++ + C C++ H+ +H + S +C EC L+ H
Sbjct: 11 QNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHN 70
Query: 60 IEIHGADPFLCIPCNKP 76
++ H + + K
Sbjct: 71 LKYHPGEENFKLTMVKR 87
Score = 32.1 bits (72), Expect = 0.084
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 4/82 (4%)
Query: 24 RNLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIEIH----GADPFLCIPCNKPFSK 79
+ H ++ E C C + H H ++C+ CN +
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR 62
Query: 80 IENYRLHQRRYHLNSVNKECKI 101
+ H +YH N + +
Sbjct: 63 YDALSEHNLKYHPGEENFKLTM 84
Score = 28.6 bits (63), Expect = 1.5
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 359 DRFKCVFCEKSFARNCNLKLHIRRYH---DKSDNTECPLCGKSFPSRGRLNEHLIQVHPA 415
++C +C H+ H + + C C L+EH ++ HP
Sbjct: 17 GGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPG 76
Query: 416 QK 417
++
Sbjct: 77 EE 78
Score = 28.2 bits (62), Expect = 2.4
Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 4/65 (6%)
Query: 240 RREKYEREKVQCPYCAKFLSRKEKLNRHIRTVHTDVN----YKCEICGEEFLSKTRYNRH 295
++ K +C YC H+ + H +V Y C C + H
Sbjct: 10 QQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEH 69
Query: 296 VVTHE 300
+ +
Sbjct: 70 NLKYH 74
Score = 27.4 bits (60), Expect = 4.3
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 4/66 (6%)
Query: 375 NLKLHIRRYHDKSDNTECPLCGKSFPSRGRLNEHLIQVHPAQK----HQCHICNKIVVSE 430
+ H ++ EC C P H+ HP + C CN +
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 431 KTLKKH 436
L +H
Sbjct: 64 DALSEH 69
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 32.9 bits (74), Expect = 0.010
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 147 SDDKPFECQFCRKAFKLKYYLTLHLRTHTG 176
S K F C++C K FK K+ L HLR HT
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTN 34
Score = 27.5 bits (60), Expect = 1.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 441 TNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
++ + F C C K FKFK + H+R HT
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTN 34
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 34.5 bits (78), Expect = 0.014
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 116 KQVHYAKLFDCHICGK-TVVTEKNYKKHMQL-HSDDKPFECQFCRKAFKLKYYLTLHLRT 173
+ +H C C T T KKHM++ +CQ CRK FK K L H
Sbjct: 17 RAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA 76
Query: 174 HTGVRP 179
+P
Sbjct: 77 EHSAKP 82
Score = 33.4 bits (75), Expect = 0.030
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 240 RREKYEREKVQCPYCAKFLSRK-EKLNRHIRTVHTDVN-YKCEICGEEFLSKTRYNRHV- 296
+R +ER + CP C + L +H+ + KC+ C ++F SK N H
Sbjct: 16 QRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM 75
Query: 297 VTHEEKQK 304
H K
Sbjct: 76 AEHSAKPS 83
Score = 33.4 bits (75), Expect = 0.033
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 360 RFKCVFCEKSFARNC-NLKLHIRRYHDKSDNTECPLCGKSFPSRGRLNEHLIQVHPAQK 417
C C + LK H+ D +C C K F S+ LN H + H A+
Sbjct: 24 EAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
Score = 31.1 bits (69), Expect = 0.19
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 411 QVHPAQKHQCHICNKIVV-SEKTLKKHL-LLHTNSEPFHCPECGKAFKFKRYVTLHMRTH 468
+H + C CN + + LKKH+ + + C C K FK K + H
Sbjct: 18 AIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAE 77
Query: 469 TGNWPT 474
P+
Sbjct: 78 HSAKPS 83
Score = 28.0 bits (61), Expect = 2.1
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 201 SKNENLRPCTLCDKKLASERKLKEHIRKQHPTS 233
K ++ C C K+ S+ L H +H
Sbjct: 49 QKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
Score = 28.0 bits (61), Expect = 2.7
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 10 KFSCSLCSYSVTIK--RNLIMHIKRKHTDEFSILCPECGRGFFNEKELAAHKIEIHGADP 67
+ C C+ VT K L H++ + ++ C C + F ++ L H + H A P
Sbjct: 24 EAVCPTCN-VVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein
of testis, proliferation potential-related protein,
protein P2P-R; NMR {Homo sapiens}
Length = 74
Score = 33.2 bits (76), Expect = 0.018
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 366 CEKSFARNCNLKLHIRRYHDKSDNTECPLCGKSFPSRGRLN 406
C S+ C IR +SD CP C ++ S L+
Sbjct: 34 CGNSYCDEC-----IRTALLESDEHTCPTCHQNDVSPDALS 69
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 31.8 bits (73), Expect = 0.021
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 150 KPFECQF--CRKAFKLKYYLTLHLRTHTGVR 178
+PF C + C K F L H RTHTG +
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 28.7 bits (65), Expect = 0.26
Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 445 PFHC--PECGKAFKFKRYVTLHMRTHTG 470
PF C CGK F + H RTHTG
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTHTG 29
Score = 24.5 bits (54), Expect = 9.5
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 252 PYCAKFLSRKEKLNRHIRTVHT 273
YC K +R ++L RH RT HT
Sbjct: 8 SYCGKRFTRSDELQRHKRT-HT 28
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 33.6 bits (77), Expect = 0.023
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 366 CEKSFARNCNLKLHIRRYHDKSDNTECPLCGKSFPSRGRLN 406
C S+ C IR +SD CP C ++ S L
Sbjct: 32 CGNSYCDEC-----IRTALLESDEHTCPTCHQNDVSPDALI 67
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 31.5 bits (72), Expect = 0.027
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 150 KPFECQFCRKAFKLKYYLTLHLRTHTGVR 178
+ F C+ C +AF + +L H R+HT +
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 29.6 bits (67), Expect = 0.13
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 445 PFHCPECGKAFKFKRYVTLHMRTHTG 470
F C C +AF + ++ H R+HT
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTN 27
Score = 26.5 bits (59), Expect = 1.6
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 250 QCPYCAKFLSRKEKLNRHIRTVHT 273
C C + +R+E L RH R+ HT
Sbjct: 4 VCEVCTRAFARQEHLKRHYRS-HT 26
>3py7_A Maltose-binding periplasmic protein,paxillin LD1, chimera; viral
protein; HET: MLR; 2.29A {Escherichia coli}
Length = 523
Score = 35.6 bits (82), Expect = 0.040
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 209 CTLC-DKKLASERKLKEHIRKQHPTSVEADLIRREKYEREKVQCPYCAKFLSRKEKLNRH 267
CT+C + LA+ER+L + + T EA+L+ + +R ++C YC L++ EK +RH
Sbjct: 436 CTICLENCLATERRLWQGVPV---TGEEAELLHGKTLDRLCIRCCYCGGKLTKNEK-HRH 491
Query: 268 I 268
+
Sbjct: 492 V 492
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 31.4 bits (71), Expect = 0.042
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 149 DKPFECQF--CRKAFKLKYYLTLHLRTHTGVR 178
DK FEC F C K FK +Y + H++TH R
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 26.4 bits (58), Expect = 2.9
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 445 PFHC--PECGKAFKFKRYVTLHMRTHTGN 471
F C P C K FK + + H++TH +
Sbjct: 18 TFECLFPGCTKTFKRRYNIRSHIQTHLED 46
Score = 26.4 bits (58), Expect = 3.3
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 350 EHFISAHSADRFKCVF--CEKSFARNCNLKLHIR 381
+ ++ F+C+F C K+F R N++ HI+
Sbjct: 8 DKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQ 41
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 34.7 bits (79), Expect = 0.044
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 8/63 (12%)
Query: 346 AELEEHFISAHSADRFKCVFCEKSFA-----RNCNLKLH---IRRYHDKSDNTECPLCGK 397
E+E++ + C C C +++H + +Y + CP C
Sbjct: 166 LEMEQYIRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCND 225
Query: 398 SFP 400
+P
Sbjct: 226 YWP 228
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 32.9 bits (74), Expect = 0.044
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 223 KEHIRKQ---HPTSVEADLIRREKYEREKVQCPYCAKFLSRK-EKLNRHIRTVHTDVNYK 278
IRK+ + + E ++ V CP C + E L +H+ ++ +
Sbjct: 6 SGRIRKEPPVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEM-FT 64
Query: 279 CEICGEEFLSKTRYNRHVVTHEEKQKFECECG 310
C CG++ S HV+ + G
Sbjct: 65 CHHCGKQLRSLAGMKYHVMANHNSLPSGPSSG 96
Score = 29.5 bits (65), Expect = 0.74
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Query: 116 KQVHYAKLFDCHICGK-TVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTH 174
++ C C T + KKHM+ + F C C K + + H+ +
Sbjct: 27 LEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQE-MFTCHHCGKQLRSLAGMKYHVMAN 85
Query: 175 TGVRPMF 181
P
Sbjct: 86 HNSLPSG 92
Score = 29.1 bits (64), Expect = 1.1
Identities = 13/64 (20%), Positives = 20/64 (31%)
Query: 321 EHVRRTHLKDYKVLCPICGYGCFRNAELEEHFISAHSADRFKCVFCEKSFARNCNLKLHI 380
E + V CP C + E + + + F C C K +K H+
Sbjct: 23 EQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHV 82
Query: 381 RRYH 384
H
Sbjct: 83 MANH 86
Score = 27.1 bits (59), Expect = 4.1
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 411 QVHPAQKHQCHICNKIVVSE-KTLKKHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHT 469
++ C C + + LKKH+ + E F C CGK + + H+ +
Sbjct: 28 EIVDKGSVSCPTCQAVGRKTIEGLKKHME-NCKQEMFTCHHCGKQLRSLAGMKYHVMANH 86
Query: 470 GNWPTF 475
+ P+
Sbjct: 87 NSLPSG 92
Score = 26.8 bits (58), Expect = 7.0
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 98 ECKICHKVLRT--ARLSEHMKQVHYAKLFDCHICGKTVVTEKNYKKH-MQLHSDDKPF 152
C C V R L +HM + ++F CH CGK + + K H M H+
Sbjct: 36 SCPTCQAVGRKTIEGLKKHM-ENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSG 92
Score = 26.4 bits (57), Expect = 9.2
Identities = 12/53 (22%), Positives = 17/53 (32%)
Query: 39 SILCPECGRGFFNEKELAAHKIEIHGADPFLCIPCNKPFSKIENYRLHQRRYH 91
S+ CP C E +E + F C C K + + H H
Sbjct: 34 SVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANH 86
Score = 26.4 bits (57), Expect = 9.8
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 360 RFKCVFCEKSFARNCN-LKLHIRRYHDKSDNTECPLCGKSFPSRGRLNEHLIQVHPAQK 417
C C+ + LK H+ K + C CGK S + H++ H +
Sbjct: 34 SVSCPTCQAVGRKTIEGLKKHMENC--KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLP 90
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 31.3 bits (70), Expect = 0.048
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 440 HTNSEPFHCPECGKAFKFKRYVTLHMRTHT 469
+ F C +C K F +Y+T H R HT
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 30.9 bits (69), Expect = 0.071
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 146 HSDDKPFECQFCRKAFKLKYYLTLHLRTHT 175
+K F+C C K F YLT H R HT
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA
binding motif, transcriptional regulator, bacter
antitoxin, Zn binding protein, transcription
regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB:
3gn5_A* 3gn5_B* 2kz8_A
Length = 133
Score = 32.4 bits (73), Expect = 0.12
Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 7/90 (7%)
Query: 42 CPECGRGFFNEK------ELAAHKIEIHGADPFLCIPCNKP-FSKIENYRLHQRRYHLNS 94
CP C +G K + G C+ C + +K E+ + +
Sbjct: 5 CPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMNKEESDAFMAQVKAFRA 64
Query: 95 VNKECKICHKVLRTARLSEHMKQVHYAKLF 124
+ + + R + Q +++F
Sbjct: 65 SVNAETVAPEFIVKVRKKLSLTQKEASEIF 94
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 29.0 bits (64), Expect = 0.23
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 150 KPFECQFCRKAFKLKYYLTLHLRTHTG 176
KP+ C C++ F L H+R HTG
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTG 28
Score = 24.7 bits (53), Expect = 7.2
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTG 470
+P+ C C + F + H+R HTG
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTG 28
>3ung_C CMR2DHD; ferredoxin fold, nucleotide-binding, polymerase, CMR
complex function; HET: ADP; 2.31A {Pyrococcus furiosus}
PDB: 3ur3_C 4doz_A
Length = 693
Score = 32.7 bits (73), Expect = 0.26
Identities = 47/237 (19%), Positives = 82/237 (34%), Gaps = 24/237 (10%)
Query: 50 FNEKELAAHKIEIHGADPFLCIPCNKPFSKIENYRLHQRRYHLNSVNKECKICHKVLRTA 109
+EKE E G K K EN R+ +R + K + T
Sbjct: 197 LSEKEDIYQVTENAGLSDEDVKKWLKFAEKKENSRVLERIAIYPLLVKILDSLGERKVTE 256
Query: 110 RLSEHMKQVHYAKLFDCHICGKTVVTEKNYKKHMQLHSDDKPFE--CQFCRKAFKLKYYL 167
E +Q+ K CH+CG+ + + H L S E C C +K Y
Sbjct: 257 ERFEKSEQLKGWK---CHVCGENLAIFGDMYDHDNLKSLWLDEEPLCPMCL----IKRYY 309
Query: 168 TLHLRTHTGVRPMFECDICHKVLKTKSKKSSGISKNENLRPCTLCDKKLASERKLKEHIR 227
+ +R+ TG + FE + +L +K ++L + SE +K+++
Sbjct: 310 PVWIRSKTGQKIRFESVVDVALLYKNWRKIFDEKYGKDLVS----KAREVSEDFVKDNM- 364
Query: 228 KQHPTSVEADLIRREKYEREKVQCPYCAKFLSRKEKLNRHIRTVHTDVNYKCEICGE 284
L+ + Y + K ++KE ++ V +N + G
Sbjct: 365 ----------LVDSDLYYSSTWESGLSKKLKNKKEIDEEKVKEVVDFLNAAYKEIGN 411
Score = 28.9 bits (63), Expect = 4.2
Identities = 12/72 (16%), Positives = 17/72 (23%), Gaps = 2/72 (2%)
Query: 256 KFLSRKEKLNRHIRTVHTDVNYKCEICGEEFLSKTRYNRHVVTHEEKQKFECECGYVTCN 315
L ++ +KC +CGE H E C C
Sbjct: 247 DSLGERKVTEERFEKSEQLKGWKCHVCGENLAIFGDMYDHDNLKSLWLDEEPLCPM--CL 304
Query: 316 KYRLTEHVRRTH 327
R R+
Sbjct: 305 IKRYYPVWIRSK 316
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex,
restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE;
1.50A {Helicobacter pylori} PDB: 3fc3_A*
Length = 200
Score = 32.2 bits (72), Expect = 0.27
Identities = 22/122 (18%), Positives = 33/122 (27%), Gaps = 6/122 (4%)
Query: 44 ECGRGFFNEKELAAHKIEIHGADPFLCIPCNKPFSKIENYRLHQRRYHLNSVNKECKICH 103
E R F+E E G D +C C+ + + C+ C
Sbjct: 52 ELKRVDFSELEAIDIYRTGKGYDKKICNICHILKNTDGFEINQTDAKGRKTTRPSCRECR 111
Query: 104 KVLRTARLSEHMK------QVHYAKLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFC 157
K + +LS K +F C IC K + + D C
Sbjct: 112 KNIDGVKLSSTEKKKMDEIAPPKGSVFTCPICEKRSIVGVTANLVHDHNHDTGWGREWIC 171
Query: 158 RK 159
Sbjct: 172 DS 173
>1fgj_A Hydroxylamine oxidoreductase; nitrification; HET: HEM HEC; 2.80A
{Nitrosomonas europaea} SCOP: a.138.1.3
Length = 546
Score = 32.9 bits (73), Expect = 0.27
Identities = 15/122 (12%), Positives = 30/122 (24%)
Query: 66 DPFLCIPCNKPFSKIENYRLHQRRYHLNSVNKECKICHKVLRTARLSEHMKQVHYAKLFD 125
DP + + + C CH + ++H K +
Sbjct: 112 DPLYYKKGKLEEVENNLRSMGKLGEKETLKEVGCIDCHVDVNKKDKADHTKDIRMPTADT 171
Query: 126 CHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDI 185
C C E+ ++ + + + + T T C +
Sbjct: 172 CGTCHLREFAERESERDTMVWPNGQWPAGRPSHALDYTANIETTVWATMPQREVAEGCTM 231
Query: 186 CH 187
CH
Sbjct: 232 CH 233
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 32.9 bits (74), Expect = 0.32
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 392 CPLCGKSFPSRGRLNEHLIQVH 413
C +C F + L+EHL H
Sbjct: 119 CNVCNARFSTMSALSEHLRSDH 140
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 28.6 bits (63), Expect = 0.34
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 441 TNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
++ +P+ CP+C A K + +H+R HTG
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTG 34
Score = 27.9 bits (61), Expect = 0.65
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 147 SDDKPFECQFCRKAFKLKYYLTLHLRTHTG 176
S KP++C C A +K L +HLR HTG
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTG 34
Score = 27.1 bits (59), Expect = 1.4
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 11 FSCSLCSYSVTIKRNLIMHIKRKHTDE 37
+ C CSY+ IK NL +H+ RKHT E
Sbjct: 10 YKCPQCSYASAIKANLNVHL-RKHTGE 35
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 28.6 bits (63), Expect = 0.35
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTG 470
P+ C CGK F K + H R HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 27.8 bits (61), Expect = 0.54
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 150 KPFECQFCRKAFKLKYYLTLHLRTHTG 176
+P+ C C K F LK+ + H R HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 28.6 bits (63), Expect = 0.42
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 146 HSDDKPFECQFCRKAFKLKYYLTLHLRTHT 175
S +PF C+ C AF K HL+ HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 28.3 bits (62), Expect = 0.50
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 445 PFHCPECGKAFKFKRYVTLHMRTHTG 470
C ECGK F+ + H H G
Sbjct: 12 TSECQECGKIFRHSSLLIEHQALHAG 37
Score = 27.6 bits (60), Expect = 1.3
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 151 PFECQFCRKAFKLKYYLTLHLRTHTG 176
ECQ C K F+ L H H G
Sbjct: 12 TSECQECGKIFRHSSLLIEHQALHAG 37
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ,
RISC, slicer, RNAse H hydrolase-gene regulation complex;
2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10
PDB: 1z25_A 1z26_A
Length = 771
Score = 32.1 bits (72), Expect = 0.51
Identities = 16/148 (10%), Positives = 39/148 (26%), Gaps = 19/148 (12%)
Query: 99 CKICHKVLRT-----------ARLSEHMKQVHYAKLFDCHICGKTVVTEKNYKKHMQLHS 147
I H++ L E + + V + ++++ +
Sbjct: 144 IHIIHQIQSMKTLWELVNKDPKELEEFLMTHKENLMLKDIASPLKTVYKPCFEEYTKKPK 203
Query: 148 DDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHKVLKTKSKKSSGISKNENLR 207
D E + ++ Y R + D+ + K +KN +
Sbjct: 204 LDHNQEIVKYWYNYHIERYWNTPEAKLEFYRKFGQVDLKQPAILAKFASKIKKNKNYKIY 263
Query: 208 PCT-LCDKKLASERK-------LKEHIR 227
L +E+ + E+ +
Sbjct: 264 LLPQLVVPTYNAEQLESDVAKEILEYTK 291
>3ov0_A Cytochrome C family protein; multiheme cytochrome C, electron
transfer, Fe reduction, GEO sulfurreducens; HET: HEM;
3.20A {Geobacter sulfurreducens}
Length = 318
Score = 31.6 bits (69), Expect = 0.54
Identities = 31/206 (15%), Positives = 60/206 (29%), Gaps = 17/206 (8%)
Query: 89 RYHLNSVNKECKICHKVLRTARLSEHMKQVHYAKLFDCHIC--GKTVVTEKNYKKHMQLH 146
HL N C+ICH L R + + K C C G + + + ++ H
Sbjct: 21 DIHLKKYNNNCRICHIALFDLRKPKRYTMLDMEKGKSCGACHTGMKAFSVADDSQCVRCH 80
Query: 147 SDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHKVLKTKSKKSSGISKNENL 206
S + A + + +H+ G +C CH + ++ +++ E
Sbjct: 81 SGSARPVAYRMKGAGEAVFSHEVHVPMLEG-----KCRTCHSNREITGGRNVTMAQMEKG 135
Query: 207 RPCTLCDKKLASERKLKEHIRKQHPTSVEADLIRREKYER----------EKVQCPYCAK 256
+ C C + + + + + K +C C
Sbjct: 136 KSCGACHNDKMAFTVAGNCGKCHKGMTPPKTVNFKMKGVADAAFSHEFHLGMYKCNECHT 195
Query: 257 FLSRKEKLNRHIRTVHTDVNYKCEIC 282
L + + D C C
Sbjct: 196 KLFAYKAGAKRFTMADMDKGKSCGAC 221
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 28.1 bits (63), Expect = 0.62
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 150 KPFECQF--CRKAFKLKYYLTLHLRTHTGVR 178
K C C K + +L HLR HTG R
Sbjct: 7 KQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 26.9 bits (60), Expect = 1.5
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 445 PFHC--PECGKAFKFKRYVTLHMRTHTG 470
C CGK + ++ H+R HTG
Sbjct: 8 QHICHIQGCGKVYGKTSHLRAHLRWHTG 35
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_9
Length = 189
Score = 30.5 bits (68), Expect = 0.86
Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 13/86 (15%)
Query: 288 SKTRYNRHVVTHEEKQKFECECGYVTCNKYRLTEHVRRTHLKDYKVLCPICGYGCFRNAE 347
K + + T ++ + Y+L + + + + CP CG G F
Sbjct: 72 KKKKKKKSYTTKKKTKHRHVHTKLGALAFYKLENNGKVSLQQKG---CPKCGPGIF---- 124
Query: 348 LEEHFISAHSADRFKCVFCEKSFARN 373
+ +H+ DR C C + +
Sbjct: 125 MAKHY------DRHYCGKCHLTLKID 144
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 26.4 bits (57), Expect = 2.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 209 CTLCDKKLASERKLKEHIRKQHP 231
C +C+K + +R +K HI+ HP
Sbjct: 12 CPVCEKSFSEDRLIKSHIKTNHP 34
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 29.4 bits (66), Expect = 2.8
Identities = 8/61 (13%), Positives = 14/61 (22%), Gaps = 11/61 (18%)
Query: 367 EKSFARNCNLKLHIRRYHDKSDNTECPLCGKSFPSRGRLNEHLIQVHPAQKHQCHICNKI 426
+ N H + + T C C Q ++C+ C
Sbjct: 335 SNIYPENATANGHDFQMFSFEETTSCKACQMLLRGTFY-----------QGYRCYRCRAP 383
Query: 427 V 427
Sbjct: 384 A 384
>2ct5_A Zinc finger BED domain containing protein 1; DREF homolog,
putative C-like transposable element, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.6
Length = 73
Score = 27.1 bits (59), Expect = 3.5
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 7 DTEKFSCSLCSYSVTIKR---NLIMHIKRKHTDEFSILC 42
+K C +C + NL H+++ H +EF
Sbjct: 26 QWKKIYCRICMAQIAYSGNTSNLSYHLEKNHPEEFCEFV 64
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 29.1 bits (64), Expect = 4.1
Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 2/68 (2%)
Query: 52 EKELAAHKIEIHGADPFLCIPCNKPFSKIENYRLHQR-RYHLNSVNKECKICHKVLRTAR 110
E + A C C++ F + H + H + +K + + R
Sbjct: 278 EHSYCRGSLR-SEAKGIYCPFCSRWFKTSSVFESHLVGKIHKKNESKRRNFVYSEYKLHR 336
Query: 111 LSEHMKQV 118
+++
Sbjct: 337 YLKYLNDE 344
>1iic_A Peptide N-myristoyltransferase; HET: MYA; 2.20A {Saccharomyces
cerevisiae} SCOP: d.108.1.2 d.108.1.2 PDB: 1iid_A*
2nmt_A* 2p6e_A* 2p6f_A* 2p6g_A*
Length = 422
Score = 28.9 bits (64), Expect = 4.2
Identities = 27/137 (19%), Positives = 49/137 (35%), Gaps = 21/137 (15%)
Query: 77 FSKIENYRLHQRRYHLNSVNKECKICHKVLRTARL-----SEHMKQVH----YAKLFDCH 127
+ + ++ +N C HK LR+ RL E ++V+ + L+
Sbjct: 117 SAIPVTLGVRGKQVPSVEINFLC--VHKQLRSKRLTPVLIKEITRRVNKCDIWHALYTAG 174
Query: 128 ICGKTVVTEKNYKKHMQLHSDDKPFECQFCR-----KAFKLKYYLTLHLRTHT-GVRPMF 181
I V+ Y H L+ K +E F + L +T T G+R +
Sbjct: 175 IVLPAPVSTCRYT-HRPLNWK-KLYEVDFTGLPDGHTEEDMIAENALPAKTKTAGLRKLK 232
Query: 182 ECDI--CHKVLKTKSKK 196
+ DI ++ K +
Sbjct: 233 KEDIDQVFELFKRYQSR 249
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 25.5 bits (55), Expect = 4.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 150 KPFECQFCRKAFKLKYYLTLHLRTHTG 176
KP +C C KAF L H+R HTG
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTG 27
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase,
deubiquitinase, cell cycle, hydrolase; 1.55A
{Saccharomyces cerevisiae} PDB: 3c0r_A
Length = 212
Score = 28.4 bits (63), Expect = 5.0
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 28 MHIKRKHTD--EFSILCPECGRGFFNEKELAAH 58
+ + + I C C F E+E+A H
Sbjct: 167 LKQTGYSFNTHKAQIKCNTCQMTFVGEREVARH 199
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator,
signaling protein; 2.00A {Mycobacterium tuberculosis}
SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Length = 230
Score = 28.3 bits (63), Expect = 5.1
Identities = 15/68 (22%), Positives = 20/68 (29%), Gaps = 13/68 (19%)
Query: 308 ECGYVTCNKYR---LTE-------HVRRTHLKDYKVLCPICGYGCF---RNAELEEHFIS 354
G + R LTE V R H ++L + G A EH +S
Sbjct: 50 RDGLLRVAGDRHLELTEKGRALAIAVMRKHRLAERLLVDVIGLPWEEVHAEACRWEHVMS 109
Query: 355 AHSADRFK 362
R
Sbjct: 110 EDVERRLV 117
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 28.2 bits (62), Expect = 5.1
Identities = 5/53 (9%), Positives = 12/53 (22%)
Query: 251 CPYCAKFLSRKEKLNRHIRTVHTDVNYKCEICGEEFLSKTRYNRHVVTHEEKQ 303
K L + H + + E + + + +Q
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 5.4
Identities = 9/76 (11%), Positives = 26/76 (34%), Gaps = 27/76 (35%)
Query: 214 KKLASERKLKEHIRKQHPTSVEADLIRREKYEREKVQCPYCAKFLSRKEKLNRHIRTVHT 273
+ A+ + +++ R++ +E E +R+ Q + + + NR
Sbjct: 100 ELDAASKVMEQEWREKAKKDLE------EWNQRQSEQ-------VEKNKINNR------- 139
Query: 274 DVNYKCEICGEEFLSK 289
+ + F +
Sbjct: 140 ----IAD---KAFYQQ 148
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix,
metal ION, ACT DNA-binding, ferrous iron, transcription;
1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A
1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A
1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A
1xcv_A 1f5t_A ...
Length = 226
Score = 28.3 bits (63), Expect = 5.4
Identities = 15/68 (22%), Positives = 20/68 (29%), Gaps = 13/68 (19%)
Query: 308 ECGYVTCNKYR---LTE-------HVRRTHLKDYKVLCPICGYGCF---RNAELEEHFIS 354
G V R +T V R H ++L I G A+ EH +S
Sbjct: 50 RDGLVVVASDRSLQMTPTGRTLATAVMRKHRLAERLLTDIIGLDINKVHDEADRWEHVMS 109
Query: 355 AHSADRFK 362
R
Sbjct: 110 DEVERRLV 117
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 28.4 bits (63), Expect = 5.6
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 406 NEHLIQVH-PAQKHQCHICNKIVVSEKTLKKHLLLHTNSEPFHCPECGKAFK 456
++ +I+ H C C K+ + K L H + C CG+ K
Sbjct: 132 DDLIIEAHGSFAHCHCIGCGKVYPPQ-VFKSKLAEHPIKDFVKCDVCGELVK 182
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.5 bits (55), Expect = 5.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 123 LFDCHICGKTVVTEKNYKKHMQLHSD 148
L+DCHIC + E + +HM +H D
Sbjct: 9 LYDCHICERKFKNELDRDRHMLVHGD 34
>3ouq_A Cytochrome C family protein; multiheme cytochrome C, electron
transfer, Fe reduction, GEO sulfurreducens, cytochrome
C7 (C3) fold; HET: HEM; 2.60A {Geobacter sulfurreducens}
Length = 161
Score = 27.7 bits (60), Expect = 5.9
Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 7/126 (5%)
Query: 89 RYHLNSVNKECKICHKVLRTARLSEHMKQVHYAKLFDCHIC--GKTVVTEKNYKKHMQLH 146
HL N C+ICH L R + + K C C G + + + ++ H
Sbjct: 21 DIHLKKYNNNCRICHIALFDLRKPKRYTMLDMEKGKSCGACHTGMKAFSVADDSQCVRCH 80
Query: 147 SDDKPFECQFCRKAFKLKYYLTLHLRTHTGVRPMFECDICHKVLKTKSKKSSGISKNENL 206
S + A + + +H+ G +C CH + ++ +++ E
Sbjct: 81 SGSARPVAYRMKGAGEAVFSHEVHVPMLEG-----KCRTCHSNREITGGRNVTMAQMEKG 135
Query: 207 RPCTLC 212
+ C C
Sbjct: 136 KSCGAC 141
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 35
Score = 25.2 bits (54), Expect = 6.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 209 CTLCDKKLASERKLKEHIRKQH 230
C LC KK S +L+ HIR+ H
Sbjct: 10 CALCLKKFVSSIRLRSHIREVH 31
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP
ribose,, gene regulation; HET: ALY OAD; 1.50A
{Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A*
1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Length = 289
Score = 28.2 bits (63), Expect = 6.2
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 406 NEHLIQVH-PAQKHQCHICNKIVVSEKTLKKHLLLHTNSEPFHCPECGKAFK 456
++ +I+ H C C K V + K L H + C CG+ K
Sbjct: 124 DDLIIEAHGSFAHCHCIGCGK-VYPPQVFKSKLAEHPIKDFVKCDVCGELVK 174
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.2 bits (54), Expect = 6.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 416 QKHQCHICNKIVVSEKTLKKHLLLHT 441
+ H C +C K S+ TLK H LLHT
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHT 33
>1rxt_A Myristoyl-, glycylpeptide N-tetradecanoyltransferase 1; alpha-beta
structure, unique N-myristoyltransferase fold; 3.00A
{Homo sapiens} SCOP: d.108.1.2 d.108.1.2
Length = 496
Score = 28.2 bits (62), Expect = 7.1
Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 21/137 (15%)
Query: 77 FSKIENYRLHQRRYHLNSVNKECKICHKVLRTARL-----SEHMKQVH----YAKLFDCH 127
+ N ++ + +N C HK LR+ R+ E ++VH + ++
Sbjct: 227 SAIPANIHIYDTEKKMVEINFLC--VHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAG 284
Query: 128 ICGKTVVTEKNYKKHMQLHSDDKPFECQFCR------KAFKLKYYLTLHLRTHTGVRPMF 181
+ V Y H L+ K E +F +K Y G+RPM
Sbjct: 285 VVLPKPVGTCRYW-HRSLNPR-KLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPME 342
Query: 182 ECDI--CHKVLKTKSKK 196
DI H++L K+
Sbjct: 343 TKDIPVVHQLLTRYLKQ 359
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Length = 37
Score = 25.1 bits (54), Expect = 7.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 354 SAHSADRFKCVFCEKSFARNCNLKLHIRRYHDKSD 388
S S + C FC+K ++ NL HIR HD D
Sbjct: 3 SGSSGIKQHCRFCKKKYSDVKNLIKHIRDAHDPQD 37
>3fo3_A Eight-heme nitrite reductase; alpha protein, eight hemes C,
oxidoreductase; HET: HEC PG6 PG4; 1.40A
{Thioalkalivibrio nitratireducens} PDB: 3d1i_A* 3f29_A*
2zo5_A* 3gm6_A* 3lg1_A* 3lgq_A* 3mmo_A* 2ot4_A* 3uu9_A*
3rkh_A* 3sce_A* 3s7w_A* 3owm_A* 3ttb_A*
Length = 525
Score = 28.2 bits (61), Expect = 7.4
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 62 IHGADPFLCIPCNKPFSKIEN---YRLHQRRYHLNSVNKECKICHKVLRTARLSEHMKQV 118
+H + C C+ P ++EN Y H +R + + + C CH + + +
Sbjct: 371 VHERNGVACADCHMPKVQLENGKVYTSHSQRTPRDMMGQACLNCHAEWTEDQALYAIDYI 430
Query: 119 H 119
Sbjct: 431 K 431
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent
deacetylase, sirtuin, substrate peptide comple
hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens}
PDB: 3gls_A 3glt_A* 3glu_A
Length = 285
Score = 27.7 bits (62), Expect = 7.5
Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 5/56 (8%)
Query: 403 GRLNEHLIQVH-PAQKHQCHICNKIVVSEKTLKKHLLLHTNSEPFHCPECGKAFKF 457
G L++ H C +C + + ++ ++ CP C K
Sbjct: 124 GIPASKLVEAHGTFASATCTVCQR-PFPGEDIRADVM---ADRVPRCPVCTGVVKP 175
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription;
2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Length = 214
Score = 27.4 bits (61), Expect = 8.4
Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 13/68 (19%)
Query: 308 ECGYVTCNKYR---LTE-------HVRRTHLKDYKVLCPICGYGCF---RNAELEEHFIS 354
+ +K LT+ + R H L GY AE+ EH +S
Sbjct: 46 AEELLIKDKKAGYLLTDLGLKLVSDLYRKHRLIEVFLVHHLGYTTEEIHEEAEVLEHTVS 105
Query: 355 AHSADRFK 362
H +R
Sbjct: 106 DHFVERLD 113
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 25.7 bits (56), Expect = 9.3
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 372 RNCNLKLH---IRRYHDKSDNTECPLCGKSFPSR 402
C +++H + +Y + CP C +P
Sbjct: 32 ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 24.5 bits (53), Expect = 9.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 446 FHCPECGKAFKFKRYVTLHMRTHTGN 471
F CPEC K F ++TLH+ H
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENK 28
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.136 0.442
Gapped
Lambda K H
0.267 0.0569 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,220,859
Number of extensions: 423962
Number of successful extensions: 4813
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3889
Number of HSP's successfully gapped: 1354
Length of query: 488
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 391
Effective length of database: 3,993,456
Effective search space: 1561441296
Effective search space used: 1561441296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.9 bits)