RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16834
(488 letters)
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 41.8 bits (99), Expect = 2e-06
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 440 HTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
H+ +P+ C ECGKAF + H R HTG
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTG 32
Score = 41.1 bits (97), Expect = 4e-06
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 146 HSDDKPFECQFCRKAFKLKYYLTLHLRTHTG 176
HS +KP+ C C KAF L H R HTG
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTG 32
Score = 26.8 bits (60), Expect = 0.54
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 361 FKCVFCEKSFARNCNLKLHIR 381
+ CV C K+F+R+ L H R
Sbjct: 8 YGCVECGKAFSRSSILVQHQR 28
Score = 24.1 bits (53), Expect = 4.3
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 277 YKCEICGEEFLSKTRYNRHVVTH 299
Y C CG+ F + +H H
Sbjct: 8 YGCVECGKAFSRSSILVQHQRVH 30
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 41.5 bits (98), Expect = 3e-06
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 147 SDDKPFECQFCRKAFKLKYYLTLHLR-THTGVRPMFECDI 185
S KP+ CQ C K F +L H++ HT RP +C +
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERP-HKCQV 39
Score = 37.3 bits (87), Expect = 1e-04
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 445 PFHCPECGKAFKFKRYVTLHMR-THTGNWPTFVCKI 479
P+ C CGK F ++ H++ HT P C++
Sbjct: 5 PYICQSCGKGFSRPDHLNGHIKQVHTSERP-HKCQV 39
Score = 31.5 bits (72), Expect = 0.014
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 361 FKCVFCEKSFARNCNLKLHIRRYH 384
+ C C K F+R +L HI++ H
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVH 29
Score = 30.7 bits (70), Expect = 0.024
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 250 QCPYCAKFLSRKEKLNRHIRTVHTDVN-YKCEI 281
C C K SR + LN HI+ VHT +KC++
Sbjct: 7 ICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
Score = 30.0 bits (68), Expect = 0.040
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 121 AKLFDCHICGKTVVTEKNYKKHMQ-LHSDDKPFECQ 155
K + C CGK + H++ +H+ ++P +CQ
Sbjct: 3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38
Score = 26.5 bits (59), Expect = 0.67
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 11 FSCSLCSYSVTIKRNLIMHIKRKHTDE 37
+ C C + +L HIK+ HT E
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSE 32
Score = 26.5 bits (59), Expect = 0.75
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 391 ECPLCGKSFPSRGRLNEHLIQVHPAQK-HQCHI 422
C CGK F LN H+ QVH +++ H+C +
Sbjct: 7 ICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
Score = 25.7 bits (57), Expect = 1.6
Identities = 6/24 (25%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 305 FEC-ECGYVTCNKYRLTEHVRRTH 327
+ C CG L H+++ H
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVH 29
Score = 24.6 bits (54), Expect = 3.7
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 277 YKCEICGEEFLSKTRYNRHV-VTHEEKQKFECE 308
Y C+ CG+ F N H+ H ++ +C+
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 40.5 bits (95), Expect = 8e-06
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 141 KHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTG 176
+ + + ++C C K+F L+ H RTHTG
Sbjct: 2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTG 37
Score = 38.2 bits (89), Expect = 6e-05
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 435 KHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
+ + C ECGK+F ++ H RTHTG
Sbjct: 2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTG 37
Score = 23.6 bits (51), Expect = 7.7
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 266 RHIRTVHTDVNYKCEICGEEFLSKTRYNRHVVTH 299
R YKC+ CG+ F + ++H TH
Sbjct: 2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 35
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 39.1 bits (92), Expect = 2e-05
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 445 PFHCPECGKAFKFKRYVTLHMRTHTG 470
PF C C + F ++T H+RTHTG
Sbjct: 3 PFQCRICMRNFSRSDHLTTHIRTHTG 28
Score = 38.0 bits (89), Expect = 6e-05
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 150 KPFECQFCRKAFKLKYYLTLHLRTHTG 176
KPF+C+ C + F +LT H+RTHTG
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTG 28
Score = 26.4 bits (59), Expect = 0.76
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 361 FKCVFCEKSFARNCNLKLHIR 381
F+C C ++F+R+ +L HIR
Sbjct: 4 FQCRICMRNFSRSDHLTTHIR 24
Score = 23.3 bits (51), Expect = 7.3
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 277 YKCEICGEEFLSKTRYNRHVVTH 299
++C IC F H+ TH
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTH 26
Score = 23.3 bits (51), Expect = 8.2
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 250 QCPYCAKFLSRKEKLNRHIRTVHT 273
QC C + SR + L HIRT HT
Sbjct: 5 QCRICMRNFSRSDHLTTHIRT-HT 27
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 38.8 bits (91), Expect = 3e-05
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 445 PFHCPECGKAFKFKRYVTLHMRTHTG 470
F C C +AF + ++ H R+HT
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTN 27
Score = 38.0 bits (89), Expect = 6e-05
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 150 KPFECQFCRKAFKLKYYLTLHLRTHTG 176
+ F C+ C +AF + +L H R+HT
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTN 27
Score = 26.8 bits (60), Expect = 0.42
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 361 FKCVFCEKSFARNCNLKLHIR 381
F C C ++FAR +LK H R
Sbjct: 3 FVCEVCTRAFARQEHLKRHYR 23
Score = 24.1 bits (53), Expect = 4.6
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 250 QCPYCAKFLSRKEKLNRHIRTVHT 273
C C + +R+E L RH R+ HT
Sbjct: 4 VCEVCTRAFARQEHLKRHYRS-HT 26
Score = 23.4 bits (51), Expect = 8.7
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 277 YKCEICGEEFLSKTRYNRHVVTH 299
+ CE+C F + RH +H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSH 25
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 38.9 bits (91), Expect = 3e-05
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 142 HMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTHTGV 177
+ + KPF+C C ++F +L LH + H V
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37
Score = 34.3 bits (79), Expect = 0.001
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 436 HLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
T +PF CP+C ++F ++ LH + H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML 36
Score = 25.5 bits (56), Expect = 1.8
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 170 HLRTHTGVRPMFECDICHKVLKTKS 194
R TG++P F+C C +
Sbjct: 2 STRGSTGIKP-FQCPDCDRSFSRSD 25
Score = 24.7 bits (54), Expect = 3.3
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 361 FKCVFCEKSFARNCNLKLHIR 381
F+C C++SF+R+ +L LH +
Sbjct: 12 FQCPDCDRSFSRSDHLALHRK 32
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 37.8 bits (88), Expect = 7e-05
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 440 HTNSEPFHCPECGKAFKFKRYVTLHMRTHTGN 471
+ PF C C AF K H++ HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT 33
Score = 36.7 bits (85), Expect = 2e-04
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 146 HSDDKPFECQFCRKAFKLKYYLTLHLRTHTG 176
S +PF C+ C AF K HL+ HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD 32
Score = 24.7 bits (54), Expect = 2.7
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 361 FKCVFCEKSFARNCNLKLHIRRYHD 385
F C C +F N H++ + D
Sbjct: 8 FVCRICLSAFTTKANCARHLKVHTD 32
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 37.0 bits (86), Expect = 1e-04
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 440 HTNSEPFHCPECGKAFKFKRYVTLHMRTHTG 470
HT +P+ C C K F+ K+ + +H + +
Sbjct: 3 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHD 33
Score = 36.6 bits (85), Expect = 2e-04
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 146 HSDDKPFECQFCRKAFKLKYYLTLHLRTHTG 176
H+ +KP+ C C K F+ K L +H + +
Sbjct: 3 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHD 33
Score = 29.6 bits (67), Expect = 0.051
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 361 FKCVFCEKSFARNCNLKLHIRRYHDKS 387
+ C C+K+F + L +H +RYHD +
Sbjct: 9 YACSHCDKTFRQKQLLDMHFKRYHDPN 35
Score = 25.8 bits (57), Expect = 1.5
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 250 QCPYCAKFLSRKEKLNRHIRTVHTDVNY 277
C +C K +K+ L+ H + + D N+
Sbjct: 10 ACSHCDKTFRQKQLLDMHFKR-YHDPNF 36
Score = 23.9 bits (52), Expect = 7.3
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDK 150
K + C C KT ++ H + + D
Sbjct: 7 KPYACSHCDKTFRQKQLLDMHFKRYHDPN 35
Score = 23.5 bits (51), Expect = 8.9
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 277 YKCEICGEEFLSKTRYNRHVVTHEEK 302
Y C C + F K + H + +
Sbjct: 9 YACSHCDKTFRQKQLLDMHFKRYHDP 34
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 36.2 bits (84), Expect = 2e-04
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 445 PFHCPECGKAFKFKRYVTLHMRTHTG 470
F CPEC K F +++ H++TH
Sbjct: 2 KFACPECPKRFMRSDHLSKHIKTHQN 27
Score = 35.4 bits (82), Expect = 4e-04
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 150 KPFECQFCRKAFKLKYYLTLHLRTHTGVR 178
K F C C K F +L+ H++TH +
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 25.0 bits (55), Expect = 1.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 361 FKCVFCEKSFARNCNLKLHIR 381
F C C K F R+ +L HI+
Sbjct: 3 FACPECPKRFMRSDHLSKHIK 23
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 34.5 bits (80), Expect = 7e-04
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 445 PFHCPECGKAFKFKRYVTLHMRTHT 469
P+ C ECGKAF + H R HT
Sbjct: 2 PYKCLECGKAFSQNSGLINHQRIHT 26
Score = 34.1 bits (79), Expect = 0.001
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 150 KPFECQFCRKAFKLKYYLTLHLRTHT 175
KP++C C KAF L H R HT
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIHT 26
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 35.0 bits (80), Expect = 9e-04
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 122 KLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCRKAFKLKYYLTLHLRTH 174
KL+ C CGK+ + +HM +H +P+ C C K FK+K++L H++ H
Sbjct: 2 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 34.7 bits (79), Expect = 0.002
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 423 CNKIVVSEKTLKKHLLLHTNSEPFHCPECGKAFKFKRYVTLHMRTH 468
C K + +H+ +H P+ C CGK FK K ++ HM+ H
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 32.0 bits (72), Expect = 0.011
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 254 CAKFLSRKEKLNRHIRTVHTDVNYKCEICGEEFLSKTRYNRHVVTH 299
C K + K + +RH+ Y C +CG++F K H+ H
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 31.2 bits (70), Expect = 0.026
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 395 CGKSFPSRGRLNEHLIQVHPAQKHQCHICNKIVVSEKTLKKHLLLH 440
CGKSF + + + H+ + + C +C K + L H+ +H
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
Score = 30.8 bits (69), Expect = 0.029
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 366 CEKSFARNCNLKLHIRRYHDKSDNTECPLCGKSFPSRGRLNEHL 409
C KSF H+ + C +CGK F + L H+
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGL-RPYGCGVCGKKFKMKHHLVGHM 50
Score = 30.4 bits (68), Expect = 0.042
Identities = 9/44 (20%), Positives = 16/44 (36%)
Query: 338 CGYGCFRNAELEEHFISAHSADRFKCVFCEKSFARNCNLKLHIR 381
CG ++ + H + C C K F +L H++
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 51
Score = 27.7 bits (61), Expect = 0.40
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 305 FECECGYVTCNKYRLTEHVRRTHLKDYKVLCPICGYGCFRNAELEEH 351
+ C+CG +K + H+ C +CG L H
Sbjct: 4 YPCQCGKSFTHKSQRDRHMSMHLGLRPYG-CGVCGKKFKMKHHLVGH 49
Score = 27.0 bits (59), Expect = 0.71
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 44 ECGRGFFNEKELAAHKIEIHGADPFLCIPCNKPFSKIENYRLHQR 88
+CG+ F ++ + H G P+ C C K F + H +
Sbjct: 7 QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 51
Score = 26.2 bits (57), Expect = 1.4
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 277 YKCEICGEEFLSKTRYNRHVVTHEEKQKFEC-ECGYVTCNKYRLTEHVR 324
Y C+ CG+ F K++ +RH+ H + + C CG K+ L H++
Sbjct: 4 YPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 51
Score = 25.4 bits (55), Expect = 2.9
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 107 RTARLSEHMKQVHYAKLFDCHICGKTVVTEKNYKKHMQLH 146
++ HM + + C +CGK + + HM++H
Sbjct: 14 HKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 34.6 bits (80), Expect = 0.001
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 440 HTNSEPFHCPECGKAFKFKRYVTLH-MRTHTGN 471
H+ +P+ C C F + +H ++ HT N
Sbjct: 3 HSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35
Score = 33.0 bits (76), Expect = 0.003
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 146 HSDDKPFECQFCRKAFKLKYYLTLH-LRTHTG 176
HS +KP+EC C F + +H L+ HT
Sbjct: 3 HSGEKPYECYICHARFTQSGTMKMHILQKHTE 34
Score = 30.3 bits (69), Expect = 0.028
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 361 FKCVFCEKSFARNCNLKLHIRRYH 384
++C C F ++ +K+HI + H
Sbjct: 9 YECYICHARFTQSGTMKMHILQKH 32
Score = 28.0 bits (63), Expect = 0.18
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 11 FSCSLCSYSVTIKRNLIMHIKRKHTDE 37
+ C +C T + MHI +KHT+
Sbjct: 9 YECYICHARFTQSGTMKMHILQKHTEN 35
Score = 26.5 bits (59), Expect = 0.70
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 32 RKHTDEFSILCPECGRGFFNEKELAAHKIEIHGAD 66
R H+ E C C F + H ++ H +
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35
Score = 26.5 bits (59), Expect = 0.82
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 250 QCPYCAKFLSRKEKLNRHIRTVHTD 274
+C C ++ + HI HT+
Sbjct: 10 ECYICHARFTQSGTMKMHILQKHTE 34
Score = 25.7 bits (57), Expect = 1.3
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 391 ECPLCGKSFPSRGRLNEHLIQVH 413
EC +C F G + H++Q H
Sbjct: 10 ECYICHARFTQSGTMKMHILQKH 32
Score = 24.2 bits (53), Expect = 5.6
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 62 IH-GADPFLCIPCNKPFSKIENYRLHQRRYH 91
H G P+ C C+ F++ ++H + H
Sbjct: 2 THSGEKPYECYICHARFTQSGTMKMHILQKH 32
Score = 23.4 bits (51), Expect = 8.9
Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 298 THEEKQKFEC-ECGYVTCNKYRLTEHVRRTHLKD 330
TH ++ +EC C + H+ + H ++
Sbjct: 2 THSGEKPYECYICHARFTQSGTMKMHILQKHTEN 35
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 34.3 bits (79), Expect = 0.001
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 153 ECQFCRKAFKLKYYLTLHLRTHTGVRPMFECD 184
C K+F K +L H++ H+ R + C+
Sbjct: 5 PEPACGKSFNFKKHLKEHMKLHSDTRD-YICE 35
Score = 33.5 bits (77), Expect = 0.002
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 446 FHCPE--CGKAFKFKRYVTLHMRTHTGNWPTFVCK 478
F CPE CGK+F FK+++ HM+ H+ ++C+
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRD-YICE 35
Score = 29.7 bits (67), Expect = 0.049
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 125 DCHICGKTVVTEKNYKKHMQLHSDDKPFECQF 156
CGK+ +K+ K+HM+LHSD + + C+F
Sbjct: 5 PEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 36
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 30
Score = 33.8 bits (78), Expect = 0.001
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 150 KPFEC--QFCRKAFKLKYYLTLHLRTHTG 176
KP +C + CRK++ L HLR+HTG
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHTG 29
Score = 33.8 bits (78), Expect = 0.002
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 445 PFHCPE--CGKAFKFKRYVTLHMRTHTG 470
P C C K++ + H+R+HTG
Sbjct: 2 PHKCTFEGCRKSYSRLENLKTHLRSHTG 29
Score = 23.4 bits (51), Expect = 8.0
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 361 FKC--VFCEKSFARNCNLKLHIR 381
KC C KS++R NLK H+R
Sbjct: 3 HKCTFEGCRKSYSRLENLKTHLR 25
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 33.8 bits (78), Expect = 0.002
Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 445 PFHC--PECGKAFKFKRYVTLHMRTHTG 470
PF C CGK F + H RTHTG
Sbjct: 2 PFMCTWSYCGKRFTRSDELQRHKRTHTG 29
Score = 33.4 bits (77), Expect = 0.002
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 150 KPFECQF--CRKAFKLKYYLTLHLRTHTGVR 178
+PF C + C K F L H RTHTG +
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 33.4 bits (77), Expect = 0.002
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 150 KPFECQF--CRKAFKLKYYLTLHLRTHTG 176
+P+ C C + F LT H+R HTG
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHTG 29
Score = 32.7 bits (75), Expect = 0.004
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 445 PFHCPE--CGKAFKFKRYVTLHMRTHTG 470
P+ CP C + F +T H+R HTG
Sbjct: 2 PYACPVESCDRRFSRSADLTRHIRIHTG 29
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 32.7 bits (74), Expect = 0.004
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTG 176
++PF+CQ C A + LT+HLR+HTG
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLRSHTG 28
Score = 25.0 bits (54), Expect = 2.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 445 PFHCPECGKAFKFKRYVTLHMRTHTGN 471
PF C C A + +T+H+R+HTG+
Sbjct: 3 PFKCQICPYASRNSSQLTVHLRSHTGD 29
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 31.6 bits (72), Expect = 0.009
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 150 KPFEC--QFCRKAFKLKYYLTLHLRTHTG 176
KPF+C + C K F L + L H+R HTG
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTG 29
Score = 30.4 bits (69), Expect = 0.027
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 445 PFHCPE--CGKAFKFKRYVTLHMRTHTG 470
PF C CGK F + H+R HTG
Sbjct: 2 PFQCTFEGCGKRFSLDFNLRTHVRIHTG 29
>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS),
large subunit ATP-binding domains {Escherichia coli
[TaxId: 562]}
Length = 275
Score = 35.0 bits (80), Expect = 0.014
Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 2/96 (2%)
Query: 342 CFRNAELEEHFISAHSADRFKCVFCEKSFARNCNLKLHIRRYHDKSDNTECPLCGKSFPS 401
+ E EE K + ++S ++ + R DK+DN ++F +
Sbjct: 55 AYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVR--DKNDNCIIVCSIENFDA 112
Query: 402 RGRLNEHLIQVHPAQKHQCHICNKIVVSEKTLKKHL 437
G I V PAQ + + + + +
Sbjct: 113 MGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREI 148
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 31.1 bits (71), Expect = 0.016
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 149 DKPFECQF--CRKAFKLKYYLTLHLRTHTG 176
D+P+ C C KAF + L H ++H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
Score = 29.6 bits (67), Expect = 0.054
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 445 PFHCPE--CGKAFKFKRYVTLHMRTHTG 470
P+ C C KAF + H ++H
Sbjct: 3 PYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
Score = 23.8 bits (52), Expect = 5.2
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 361 FKCVF--CEKSFARNCNLKLHIRRYHDKS 387
+ C C+K+F RN +L H + + +K+
Sbjct: 4 YSCDHPGCDKAFVRNHDLIRHKKSHQEKA 32
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 30.3 bits (68), Expect = 0.049
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 432 TLKKHLLLHTNSEPFHCPEC--GKAFKFKRYVTLHMRTHTG 470
++ K++ + F C K FK + + H++TH
Sbjct: 6 SIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLE 45
Score = 29.9 bits (67), Expect = 0.055
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 137 KNYKKHMQLHSDDKPFECQFCR--KAFKLKYYLTLHLRTHTGVR 178
+ DK FEC F K FK +Y + H++TH R
Sbjct: 4 RGSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 29.2 bits (65), Expect = 0.082
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTG 176
+KP+ C C FK K ++ H+R+H G
Sbjct: 1 EKPYSCPVCGLRFKRKDRMSYHVRSHDG 28
Score = 28.5 bits (63), Expect = 0.15
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 444 EPFHCPECGKAFKFKRYVTLHMRTHTG 470
+P+ CP CG FK K ++ H+R+H G
Sbjct: 2 KPYSCPVCGLRFKRKDRMSYHVRSHDG 28
Score = 23.5 bits (50), Expect = 9.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 277 YKCEICGEEFLSKTRYNRHVVTHE 300
Y C +CG F K R + HV +H+
Sbjct: 4 YSCPVCGLRFKRKDRMSYHVRSHD 27
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 28.5 bits (64), Expect = 0.11
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 150 KPFECQF--CRKAFKLKYYLTLHLRTHT 175
+P+ C F C K F L H+ TH
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
Score = 26.5 bits (59), Expect = 0.58
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 445 PFHCPE--CGKAFKFKRYVTLHMRTHT 469
P+ CP C K F + H+ TH
Sbjct: 2 PYVCPFDGCNKKFAQSTNLKSHILTHA 28
Score = 24.2 bits (53), Expect = 4.6
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 361 FKCVF--CEKSFARNCNLKLHIR 381
+ C F C K FA++ NLK HI
Sbjct: 3 YVCPFDGCNKKFAQSTNLKSHIL 25
>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 27.7 bits (61), Expect = 0.21
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 248 KVQCPYCAKFLSRKEKLNRHIRTVHT 273
K CP+C ++RK L H+R H+
Sbjct: 2 KFHCPHCDTVIARKSDLGVHLRKQHS 27
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 27
Score = 27.7 bits (61), Expect = 0.24
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 153 ECQFCRKAFKLKYYLTLHLRTHTGVR 178
EC C K F KYYL +H R HTG +
Sbjct: 2 ECPTCHKKFLSKYYLKVHNRKHTGEK 27
Score = 25.4 bits (55), Expect = 1.7
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 447 HCPECGKAFKFKRYVTLHMRTHTG 470
CP C K F K Y+ +H R HTG
Sbjct: 2 ECPTCHKKFLSKYYLKVHNRKHTG 25
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 27.3 bits (60), Expect = 0.29
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 445 PFHCPECGKAFKFKRYVTLHMRTHTG 470
P C CGK F K + HMR HTG
Sbjct: 1 PHKCEVCGKCFSRKDKLKTHMRCHTG 26
Score = 26.6 bits (58), Expect = 0.60
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 151 PFECQFCRKAFKLKYYLTLHLRTHTG 176
P +C+ C K F K L H+R HTG
Sbjct: 1 PHKCEVCGKCFSRKDKLKTHMRCHTG 26
>d1fgja_ a.138.1.3 (A:) Hydroxylamine oxidoreductase, HAO
{Nitrosomonas europaea [TaxId: 915]}
Length = 499
Score = 29.6 bits (65), Expect = 0.99
Identities = 13/90 (14%), Positives = 25/90 (27%)
Query: 99 CKICHKVLRTARLSEHMKQVHYAKLFDCHICGKTVVTEKNYKKHMQLHSDDKPFECQFCR 158
C CH + ++H K + C C E+ ++ + + + +
Sbjct: 145 CIDCHVDVNKKDKADHTKDIRMPTADTCGTCHLREFAERESERDTMVWPNGQWPAGRPSH 204
Query: 159 KAFKLKYYLTLHLRTHTGVRPMFECDICHK 188
T T C +CH
Sbjct: 205 ALDYTANIETTVWATMPQREVAEGCTMCHT 234
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 53
Score = 26.5 bits (58), Expect = 1.1
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 206 LRPCTLCDKKLASERKLKEHIRKQHPTS 233
+ PC LC K +L++H QH +
Sbjct: 6 ILPCGLCGKVFTDANRLRQH-EAQHGVT 32
Score = 26.1 bits (57), Expect = 1.5
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 392 CPLCGKSFPSRGRLNEHLIQ 411
C LCGK F RL +H Q
Sbjct: 9 CGLCGKVFTDANRLRQHEAQ 28
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 30
Score = 25.5 bits (55), Expect = 1.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 149 DKPFECQFCRKAFKLKYYLTLHLRTHTG 176
++ F C C++ F+ + L LH+ +HTG
Sbjct: 2 EQVFTCSVCQETFRRRMELRLHMVSHTG 29
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 25.3 bits (55), Expect = 1.9
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 11 FSCSLCSYSVTIKRNLIMHIKRKHTD 36
F C+ CS+ NL H+K+ H D
Sbjct: 3 FKCNYCSFDTKQPSNLSKHMKKFHGD 28
>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 30
Score = 25.0 bits (54), Expect = 2.0
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 150 KPFECQF--CRKAFKLKYYLTLHLRTHTG 176
KPF C+ C K F ++LT H THTG
Sbjct: 1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTG 29
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 26.2 bits (58), Expect = 2.1
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 209 CTLCDKKLASERKLKEHIR-KQHPTSVEADLIRREKYERE 247
C C + LK H R K H ++ + E Y +E
Sbjct: 18 CLACARYFIDSTNLKTHFRSKDHKKRLKQ--LSVEPYSQE 55
>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 33
Score = 24.7 bits (54), Expect = 3.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 153 ECQFCRKAFKLKYYLTLHLRTHTG 176
C + FK +Y L +H+R HTG
Sbjct: 9 GCSRELRPFKAQYMLVVHMRRHTG 32
Score = 24.3 bits (53), Expect = 4.7
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 448 CPECGKAFKFKRYVTLHMRTHTG 470
C + FK + + +HMR HTG
Sbjct: 10 CSRELRPFKAQYMLVVHMRRHTG 32
>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger
peptide) {Drosophila melanogaster [TaxId: 7227]}
Length = 26
Score = 24.2 bits (52), Expect = 4.2
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 251 CPYCAKFLSRKEKLNRHIRTVH 272
CP+C K +RK+ + H++ +H
Sbjct: 4 CPFCFKEFTRKDNMTAHVKIIH 25
>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 44
Score = 24.3 bits (52), Expect = 5.0
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 277 YKCEICGEEFLSKTRYNRHVVTHEEK 302
Y+C IC + F+ + ++RHV + +
Sbjct: 6 YECNICAKRFMWRDSFHRHVTSCTKS 31
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 24.3 bits (52), Expect = 5.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 150 KPFECQFCRKAFKLKYYLTLHLRTHTGVRP 179
K C+ C K F+ Y+L H +H+G +P
Sbjct: 4 KQVACEICGKIFRDVYHLNRHKLSHSGEKP 33
Score = 23.5 bits (50), Expect = 8.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 276 NYKCEICGEEFLSKTRYNRHVVTHEEKQKF 305
CEICG+ F NRH ++H ++ +
Sbjct: 5 QVACEICGKIFRDVYHLNRHKLSHSGEKPY 34
>d2rdza1 a.138.1.3 (A:38-477) Cytochrome c nitrite reductase
{Escherichia coli [TaxId: 562]}
Length = 440
Score = 26.7 bits (58), Expect = 6.9
Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 46 GRGFFNEKELAAHKIEIHGADPFLCIPCNKPFSKIEN---YRLHQRRYHLNSVNKECKIC 102
E IHG + CI C+ P + Y H+ ++ + C C
Sbjct: 221 PMLKAQHPEYETWTAGIHGKNNVTCIDCHMPKVQNAEGKLYTDHKIGNPFDNFAQTCANC 280
Query: 103 HK 104
H
Sbjct: 281 HT 282
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 23.2 bits (49), Expect = 9.3
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 418 HQCHICNKIVVSEKTLKKHLLLHTN 442
++C C+ +L KHL +H++
Sbjct: 4 YKCKTCDYAAADSSSLNKHLRIHSD 28
>d2ct5a1 g.37.1.6 (A:8-67) Zinc finger BED domain-containing
protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 60
Score = 24.2 bits (52), Expect = 9.5
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 13 CSLCSYSVTIK---RNLIMHIKRKHTDEFSILCPE 44
C +C + NL H+++ H +EF
Sbjct: 25 CRICMAQIAYSGNTSNLSYHLEKNHPEEFCEFVKS 59
>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 121
Score = 25.2 bits (55), Expect = 9.9
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 208 PCTLCDKKLASERKLKEHIRKQH 230
PC CD+ AS + H + +H
Sbjct: 17 PCLFCDRLFASAEETFSHCKLEH 39
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.136 0.442
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,877,629
Number of extensions: 94396
Number of successful extensions: 1138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1108
Number of HSP's successfully gapped: 339
Length of query: 488
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 399
Effective length of database: 1,185,626
Effective search space: 473064774
Effective search space used: 473064774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.5 bits)