BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16836
(319 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HV6|A Chain A, Crystal Structure Of The Phosphotyrosyl Phosphatase
Activator
pdb|2HV6|B Chain B, Crystal Structure Of The Phosphotyrosyl Phosphatase
Activator
pdb|2HV7|A Chain A, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|B Chain B, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|C Chain C, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|D Chain D, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|E Chain E, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|F Chain F, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|G Chain G, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
pdb|2HV7|H Chain H, Crystal Structure Of Phosphotyrosyl Phosphatase Activator
Bound To Atpgammas
Length = 323
Score = 335 bits (860), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 156/296 (52%), Positives = 210/296 (70%), Gaps = 1/296 (0%)
Query: 16 SSKNAVGPDHVYAIPKRQVLKDSDMKQWENSEAYHEYQGFILSMNEAVRGKAIDTRLEPS 75
SS+ A + IPK+++ DM +W+ S+AY +Y GFIL++NE V+GK + S
Sbjct: 12 SSEEAPPATQNFIIPKKEIHTVPDMGKWKRSQAYADYIGFILTLNEGVKGKKLTFEYRVS 71
Query: 76 NNVMSVFQMLEHFNKLIDETPPIDQPQRFGNKAFAQWLNKIGECVETELQKALPEKFHAA 135
+ + +L ++ IDETPP+DQP RFGNKA+ W K+ E E + +P AA
Sbjct: 72 EAIEKLVALLNTLDRWIDETPPVDQPSRFGNKAYRTWYAKLDEEAENLVATVVPTHLAAA 131
Query: 136 IPEISVYLKESFGNSTRIDYGTGHEMAFCMFLLCLFRIGAFSMNDRVAVVNRIFVRYLDL 195
+PE++VYLKES GNSTRIDYGTGHE AF FL CL +IG ++D++A+V ++F RYL++
Sbjct: 132 VPEVAVYLKESVGNSTRIDYGTGHEAAFAAFLCCLCKIGVLRVDDQIAIVFKVFNRYLEV 191
Query: 196 VRRLQCEYRMEPAGSHGVWSLDDYQFVPFIWGSSQLFGNKDEIEPNMFLLERTVLDHRDK 255
+R+LQ YRMEPAGS GVW LDD+QF+PFIWGSSQL + +EP F+ E+ V ++
Sbjct: 192 MRKLQKTYRMEPAGSQGVWGLDDFQFLPFIWGSSQLI-DHPYLEPRHFVDEKAVNENHKD 250
Query: 256 YMFLACIQYIMKVKTGHFSEHSNQLWNISALPSWSKINQGLLKMYKGEVLAKFPVI 311
YMFL CI +I ++KTG F+EHSNQLWNISA+PSWSK+NQGL++MYK E L KFPVI
Sbjct: 251 YMFLECILFITEMKTGPFAEHSNQLWNISAVPSWSKVNQGLIRMYKAECLEKFPVI 306
>pdb|2G62|A Chain A, Crystal Structure Of Human Ptpa
Length = 325
Score = 335 bits (859), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 157/300 (52%), Positives = 212/300 (70%), Gaps = 8/300 (2%)
Query: 12 DLAFSSKNAVGPDHVYAIPKRQVLKDSDMKQWENSEAYHEYQGFILSMNEAVRGKAIDTR 71
+L F S+N + IPK+++ DM +W+ S+AY +Y GFIL++NE V+GK +
Sbjct: 17 NLYFQSRN-------FIIPKKEIHTVPDMGKWKRSQAYADYIGFILTLNEGVKGKKLTFE 69
Query: 72 LEPSNNVMSVFQMLEHFNKLIDETPPIDQPQRFGNKAFAQWLNKIGECVETELQKALPEK 131
S + + +L ++ IDETPP+DQP RFGNKA+ W K+ E E + +P
Sbjct: 70 YRVSEAIEKLVALLNTLDRWIDETPPVDQPSRFGNKAYRTWYAKLDEEAENLVATVVPTH 129
Query: 132 FHAAIPEISVYLKESFGNSTRIDYGTGHEMAFCMFLLCLFRIGAFSMNDRVAVVNRIFVR 191
AA+PE++VYLKES GNSTRIDYGTGHE AF FL CL +IG ++D++A+V ++F R
Sbjct: 130 LAAAVPEVAVYLKESVGNSTRIDYGTGHEAAFAAFLCCLCKIGVLRVDDQIAIVFKVFNR 189
Query: 192 YLDLVRRLQCEYRMEPAGSHGVWSLDDYQFVPFIWGSSQLFGNKDEIEPNMFLLERTVLD 251
YL+++R+LQ YRMEPAGS GVW LDD+QF+PFIWGSSQL + +EP F+ E+ V +
Sbjct: 190 YLEVMRKLQKTYRMEPAGSQGVWGLDDFQFLPFIWGSSQLI-DHPYLEPRHFVDEKAVNE 248
Query: 252 HRDKYMFLACIQYIMKVKTGHFSEHSNQLWNISALPSWSKINQGLLKMYKGEVLAKFPVI 311
+ YMFL CI +I ++KTG F+EHSNQLWNISA+PSWSK+NQGL++MYK E L KFPVI
Sbjct: 249 NHKDYMFLECILFITEMKTGPFAEHSNQLWNISAVPSWSKVNQGLIRMYKAECLEKFPVI 308
>pdb|2IXM|A Chain A, Structure Of Human Ptpa
Length = 303
Score = 334 bits (857), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 153/285 (53%), Positives = 206/285 (72%), Gaps = 1/285 (0%)
Query: 27 YAIPKRQVLKDSDMKQWENSEAYHEYQGFILSMNEAVRGKAIDTRLEPSNNVMSVFQMLE 86
+ IPK+++ DM +W+ S+AY +Y GFIL++NE V+GK + S + + +L
Sbjct: 4 FIIPKKEIHTVPDMGKWKRSQAYADYIGFILTLNEGVKGKKLTFEYRVSEAIEKLLALLN 63
Query: 87 HFNKLIDETPPIDQPQRFGNKAFAQWLNKIGECVETELQKALPEKFHAAIPEISVYLKES 146
++ IDETPP+DQP RFGNKA+ W K+ E E + +P AA+PE++VYLKES
Sbjct: 64 TLDRWIDETPPVDQPSRFGNKAYRTWYAKLDEEAENLVATVVPTHLAAAVPEVAVYLKES 123
Query: 147 FGNSTRIDYGTGHEMAFCMFLLCLFRIGAFSMNDRVAVVNRIFVRYLDLVRRLQCEYRME 206
GNSTRIDYGTGHE AF FL CL +IG ++D++A+V ++F RYL+++R+LQ YRME
Sbjct: 124 VGNSTRIDYGTGHEAAFAAFLCCLCKIGVLRVDDQIAIVFKVFNRYLEVMRKLQKTYRME 183
Query: 207 PAGSHGVWSLDDYQFVPFIWGSSQLFGNKDEIEPNMFLLERTVLDHRDKYMFLACIQYIM 266
PAGS GVW LDD+QF+PFIWGSSQL + +EP F+ E+ V ++ YMFL CI +I
Sbjct: 184 PAGSQGVWGLDDFQFLPFIWGSSQLI-DHPYLEPRHFVDEKAVNENHKDYMFLECILFIT 242
Query: 267 KVKTGHFSEHSNQLWNISALPSWSKINQGLLKMYKGEVLAKFPVI 311
++KTG F+EHSNQLWNISA+PSWSK+NQGL++MYK E L KFPVI
Sbjct: 243 EMKTGPFAEHSNQLWNISAVPSWSKVNQGLIRMYKAECLEKFPVI 287
>pdb|2IXP|A Chain A, Crystal Structure Of The Pp2a Phosphatase Activator Ypa1
Ptpa1 In Complex With Model Substrate
pdb|2IXP|B Chain B, Crystal Structure Of The Pp2a Phosphatase Activator Ypa1
Ptpa1 In Complex With Model Substrate
pdb|2IXP|C Chain C, Crystal Structure Of The Pp2a Phosphatase Activator Ypa1
Ptpa1 In Complex With Model Substrate
pdb|2IXP|D Chain D, Crystal Structure Of The Pp2a Phosphatase Activator Ypa1
Ptpa1 In Complex With Model Substrate
Length = 323
Score = 194 bits (494), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 170/298 (57%), Gaps = 13/298 (4%)
Query: 23 PDHVYAIPKRQVLKDSDMKQWENSEAYHEYQ------GFILSMNEAVRGKAIDTRLEPSN 76
P ++ P +++ +++S A H + ++S A + + N
Sbjct: 9 PHATFSTPVKRIFDTQTTLDFQSSLAIHRIKYHLHKYTTLISHCSDPDPHATASSIAMVN 68
Query: 77 NVMSVFQMLEHFNKLIDETPPIDQPQRFGNKAFAQWLNKIGECVETELQKALPEKFHAAI 136
+M V L H LIDETPP+ P+R+GN A +W +K+ E + LQ+ LP ++H +
Sbjct: 69 GLMGVLDKLAH---LIDETPPLPGPRRYGNLACREWHHKLDERLPQWLQEMLPSEYHEVV 125
Query: 137 PEISVYLKESFGNSTRIDYGTGHEMAFCMFLLCLFRIGAFSMNDRVAVVNRIFVRYLDLV 196
PE+ YL SFG+STR+DYGTGHE++F + L +G F + R A V +F +Y ++
Sbjct: 126 PELQYYLGNSFGSSTRLDYGTGHELSFMATVAALDMLGMFP-HMRGADVFLLFNKYYTIM 184
Query: 197 RRLQCEYRMEPAGSHGVWSLDDYQFVPFIWGSS--QLFGNKDEIEPNMFLLERTVLDHRD 254
RRL Y +EPAGSHGVW LDD+ + +I GSS QL + ++P L + V +++D
Sbjct: 185 RRLILTYTLEPAGSHGVWGLDDHFHLVYILGSSQWQLLDAQAPLQPREILDKSLVREYKD 244
Query: 255 KYMFLACIQYIMKVKTGHFSEHSNQLWNIS-ALPSWSKINQGLLKMYKGEVLAKFPVI 311
+ I +I +VK G F EHS L++I+ +P WSK+ +GLLKMY EVL KFPV+
Sbjct: 245 TNFYCQGINFINEVKMGPFEEHSPILYDIAVTVPRWSKVCKGLLKMYSVEVLKKFPVV 302
>pdb|2IXO|A Chain A, Crystal Structure Of The Pp2a Phosphatase Activator Ypa1
Ptpa1
pdb|2IXO|B Chain B, Crystal Structure Of The Pp2a Phosphatase Activator Ypa1
Ptpa1
Length = 323
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 169/298 (56%), Gaps = 13/298 (4%)
Query: 23 PDHVYAIPKRQVLKDSDMKQWENSEAYHEYQ------GFILSMNEAVRGKAIDTRLEPSN 76
P ++ P +++ +++S A H + ++S A + + N
Sbjct: 9 PHATFSTPVKRIFDTQTTLDFQSSLAIHRIKYHLHKYTTLISHCSDPDPHATASSIAMVN 68
Query: 77 NVMSVFQMLEHFNKLIDETPPIDQPQRFGNKAFAQWLNKIGECVETELQKALPEKFHAAI 136
+M V L H LIDETPP+ P+R+GN A +W +K+ E + LQ+ LP ++H +
Sbjct: 69 GLMGVLDKLAH---LIDETPPLPGPRRYGNLACREWHHKLDERLPQWLQEMLPSEYHEVV 125
Query: 137 PEISVYLKESFGNSTRIDYGTGHEMAFCMFLLCLFRIGAFSMNDRVAVVNRIFVRYLDLV 196
PE+ YL SFG+STR+DYGTGHE++F + L +G F + R A V +F +Y ++
Sbjct: 126 PELQYYLGNSFGSSTRLDYGTGHELSFMATVAALDMLGMFP-HHRGADVFLLFNKYYTIM 184
Query: 197 RRLQCEYRMEPAGSHGVWSLDDYQFVPFIWGSS--QLFGNKDEIEPNMFLLERTVLDHRD 254
RRL Y +EPAGSHGVW LDD+ + +I GSS QL + ++P L + V +++D
Sbjct: 185 RRLILTYTLEPAGSHGVWGLDDHFHLVYILGSSQWQLLDAQAPLQPREILDKSLVREYKD 244
Query: 255 KYMFLACIQYIMKVKTGHFSEHSNQLWNIS-ALPSWSKINQGLLKMYKGEVLAKFPVI 311
+ I +I +VK G F EHS L++I+ +P WSK+ +GLLKMY EV KFPV+
Sbjct: 245 TNFYCQGINFINEVKMGPFEEHSPILYDIAVTVPRWSKVCKGLLKMYSVEVEKKFPVV 302
>pdb|2IXN|A Chain A, Crystal Structure Of The Pp2a Phosphatase Activator Ypa2
Ptpa2
pdb|2IXN|B Chain B, Crystal Structure Of The Pp2a Phosphatase Activator Ypa2
Ptpa2
Length = 310
Score = 191 bits (486), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 102/288 (35%), Positives = 164/288 (56%), Gaps = 6/288 (2%)
Query: 29 IPKRQVLKDSDMKQWENSEAYHEYQGFILSMNEAVRGKAIDTRLEP-SNNVMSVFQMLEH 87
+P++++L DMK WE S + FI+ + E+V+G EP S ++ S+ +L
Sbjct: 2 LPEKRLLTPDDMKLWEESPTRAHFTKFIIDLAESVKGHENSQYKEPISESINSMMNLLSQ 61
Query: 88 FNKLIDETPPIDQP--QRFGNKAFAQWLNKIGECVETELQKALPEKFHAAIPEISVYLKE 145
+ + P I RFG F + +++ L+ P + ++S+YL E
Sbjct: 62 IKDITQKHPVIKDADSSRFGKVEFRDFYDEVSRNSRKILRSEFPSLTDEQLEQLSIYLDE 121
Query: 146 SFGNSTRIDYGTGHEMAFCMFLLCLFRIGAFSM-NDRVAVVNRIFVRYLDLVRRLQCEYR 204
S+GN RIDYG+GHE+ F L L+ G F++ ND +V ++F+ YL ++R L+ +Y
Sbjct: 122 SWGNKRRIDYGSGHELNFMCLLYGLYSYGIFNLSNDSTNLVLKVFIEYLKIMRILETKYW 181
Query: 205 MEPAGSHGVWSLDDYQFVPFIWGSSQLFGNKDEIEPNMFLLERTVLDHRDKYMFLACIQY 264
+EPAGSHGVW LDDY F+PF++G+ QL +K ++P V +Y++ CI +
Sbjct: 182 LEPAGSHGVWGLDDYHFLPFLFGAFQLTTHK-HLKPISIHNNELVEMFAHRYLYFGCIAF 240
Query: 265 IMKVK-TGHFSEHSNQLWNISALPSWSKINQGLLKMYKGEVLAKFPVI 311
I KVK + HS L +IS + +WSK+ +G++KMYK EVL+K P++
Sbjct: 241 INKVKSSASLRWHSPMLDDISGVKTWSKVAEGMIKMYKAEVLSKLPIM 288
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 463
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Query: 66 KAIDTRLEPSNNVMSVFQMLEHFNKLIDETPPID 99
K DTR+EP N +SV Q++EH DET ID
Sbjct: 174 KRSDTRVEPYNATLSVHQLVEH----SDETFCID 203
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,068,049
Number of Sequences: 62578
Number of extensions: 412913
Number of successful extensions: 866
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 843
Number of HSP's gapped (non-prelim): 10
length of query: 319
length of database: 14,973,337
effective HSP length: 99
effective length of query: 220
effective length of database: 8,778,115
effective search space: 1931185300
effective search space used: 1931185300
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)