RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16836
(319 letters)
>2ixm_A Serine/threonine-protein phosphatase 2A regulatory subunit B'; 2
PTPA, ppiase, hydrolase activator; 1.5A {Homo sapiens}
SCOP: a.268.1.1 PDB: 2hv6_A 2hv7_A* 2g62_A
Length = 303
Score = 379 bits (975), Expect = e-133
Identities = 153/287 (53%), Positives = 206/287 (71%), Gaps = 1/287 (0%)
Query: 25 HVYAIPKRQVLKDSDMKQWENSEAYHEYQGFILSMNEAVRGKAIDTRLEPSNNVMSVFQM 84
+ IPK+++ DM +W+ S+AY +Y GFIL++NE V+GK + S + + +
Sbjct: 2 QNFIIPKKEIHTVPDMGKWKRSQAYADYIGFILTLNEGVKGKKLTFEYRVSEAIEKLLAL 61
Query: 85 LEHFNKLIDETPPIDQPQRFGNKAFAQWLNKIGECVETELQKALPEKFHAAIPEISVYLK 144
L ++ IDETPP+DQP RFGNKA+ W K+ E E + +P AA+PE++VYLK
Sbjct: 62 LNTLDRWIDETPPVDQPSRFGNKAYRTWYAKLDEEAENLVATVVPTHLAAAVPEVAVYLK 121
Query: 145 ESFGNSTRIDYGTGHEMAFCMFLLCLFRIGAFSMNDRVAVVNRIFVRYLDLVRRLQCEYR 204
ES GNSTRIDYGTGHE AF FL CL +IG ++D++A+V ++F RYL+++R+LQ YR
Sbjct: 122 ESVGNSTRIDYGTGHEAAFAAFLCCLCKIGVLRVDDQIAIVFKVFNRYLEVMRKLQKTYR 181
Query: 205 MEPAGSHGVWSLDDYQFVPFIWGSSQLFGNKDEIEPNMFLLERTVLDHRDKYMFLACIQY 264
MEPAGS GVW LDD+QF+PFIWGSSQL + +EP F+ E+ V ++ YMFL CI +
Sbjct: 182 MEPAGSQGVWGLDDFQFLPFIWGSSQLIDHP-YLEPRHFVDEKAVNENHKDYMFLECILF 240
Query: 265 IMKVKTGHFSEHSNQLWNISALPSWSKINQGLLKMYKGEVLAKFPVI 311
I ++KTG F+EHSNQLWNISA+PSWSK+NQGL++MYK E L KFPVI
Sbjct: 241 ITEMKTGPFAEHSNQLWNISAVPSWSKVNQGLIRMYKAECLEKFPVI 287
>2ixn_A Serine/threonine-protein phosphatase 2A activator; PP2A phosphatase
activator prolyl isomerase PTPA, isomerase; 2.8A
{Saccharomyces cerevisiae} SCOP: a.268.1.1
Length = 310
Score = 363 bits (932), Expect = e-126
Identities = 100/288 (34%), Positives = 163/288 (56%), Gaps = 6/288 (2%)
Query: 29 IPKRQVLKDSDMKQWENSEAYHEYQGFILSMNEAVRGKAI-DTRLEPSNNVMSVFQMLEH 87
+P++++L DMK WE S + FI+ + E+V+G + S ++ S+ +L
Sbjct: 2 LPEKRLLTPDDMKLWEESPTRAHFTKFIIDLAESVKGHENSQYKEPISESINSMMNLLSQ 61
Query: 88 FNKLIDETPPIDQ--PQRFGNKAFAQWLNKIGECVETELQKALPEKFHAAIPEISVYLKE 145
+ + P I RFG F + +++ L+ P + ++S+YL E
Sbjct: 62 IKDITQKHPVIKDADSSRFGKVEFRDFYDEVSRNSRKILRSEFPSLTDEQLEQLSIYLDE 121
Query: 146 SFGNSTRIDYGTGHEMAFCMFLLCLFRIGAFSM-NDRVAVVNRIFVRYLDLVRRLQCEYR 204
S+GN RIDYG+GHE+ F L L+ G F++ ND +V ++F+ YL ++R L+ +Y
Sbjct: 122 SWGNKRRIDYGSGHELNFMCLLYGLYSYGIFNLSNDSTNLVLKVFIEYLKIMRILETKYW 181
Query: 205 MEPAGSHGVWSLDDYQFVPFIWGSSQLFGNKDEIEPNMFLLERTVLDHRDKYMFLACIQY 264
+EPAGSHGVW LDDY F+PF++G+ QL +K ++P V +Y++ CI +
Sbjct: 182 LEPAGSHGVWGLDDYHFLPFLFGAFQLTTHKH-LKPISIHNNELVEMFAHRYLYFGCIAF 240
Query: 265 IMKVKT-GHFSEHSNQLWNISALPSWSKINQGLLKMYKGEVLAKFPVI 311
I KVK+ HS L +IS + +WSK+ +G++KMYK EVL+K P++
Sbjct: 241 INKVKSSASLRWHSPMLDDISGVKTWSKVAEGMIKMYKAEVLSKLPIM 288
>2ixo_A Serine/threonine-protein phosphatase 2A activator 1; isomerase,
PP2A phosphatase activator prolyl isomerase PTPA,
nuclear protein; 2.6A {Saccharomyces cerevisiae} SCOP:
a.268.1.1 PDB: 2ixp_A*
Length = 323
Score = 357 bits (918), Expect = e-124
Identities = 105/295 (35%), Positives = 167/295 (56%), Gaps = 7/295 (2%)
Query: 23 PDHVYAIPKRQVLKDSDMKQWENSEAYHEYQGFILSMNEAVRGKAIDTRLEPSNN---VM 79
P ++ P +++ +++S A H + + + + +++ V
Sbjct: 9 PHATFSTPVKRIFDTQTTLDFQSSLAIHRIKYHLHKYTTLISHCSDPDPHATASSIAMVN 68
Query: 80 SVFQMLEHFNKLIDETPPIDQPQRFGNKAFAQWLNKIGECVETELQKALPEKFHAAIPEI 139
+ +L+ LIDETPP+ P+R+GN A +W +K+ E + LQ+ LP ++H +PE+
Sbjct: 69 GLMGVLDKLAHLIDETPPLPGPRRYGNLACREWHHKLDERLPQWLQEMLPSEYHEVVPEL 128
Query: 140 SVYLKESFGNSTRIDYGTGHEMAFCMFLLCLFRIGAFSMNDRVAVVNRIFVRYLDLVRRL 199
YL SFG+STR+DYGTGHE++F + L +G F + R A V +F +Y ++RRL
Sbjct: 129 QYYLGNSFGSSTRLDYGTGHELSFMATVAALDMLGMFP-HHRGADVFLLFNKYYTIMRRL 187
Query: 200 QCEYRMEPAGSHGVWSLDDYQFVPFIWGSSQLFG--NKDEIEPNMFLLERTVLDHRDKYM 257
Y +EPAGSHGVW LDD+ + +I GSSQ + ++P L + V +++D
Sbjct: 188 ILTYTLEPAGSHGVWGLDDHFHLVYILGSSQWQLLDAQAPLQPREILDKSLVREYKDTNF 247
Query: 258 FLACIQYIMKVKTGHFSEHSNQLWNIS-ALPSWSKINQGLLKMYKGEVLAKFPVI 311
+ I +I +VK G F EHS L++I+ +P WSK+ +GLLKMY EV KFPV+
Sbjct: 248 YCQGINFINEVKMGPFEEHSPILYDIAVTVPRWSKVCKGLLKMYSVEVEKKFPVV 302
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 6e-04
Identities = 46/287 (16%), Positives = 86/287 (29%), Gaps = 82/287 (28%)
Query: 20 AVGPDHVYAIPKRQVLKDSDMKQWENSEAYHEYQGFILSMNEAVRGKAIDTRLEPSNNVM 79
P + I + ++D + W+N + + + + + +++ LEP
Sbjct: 324 TTNPRRLSIIAES--IRD-GLATWDNWKHVNCDK-----LTTIIE-SSLNV-LEP-AEYR 372
Query: 80 SVFQMLEHFNKLIDETPPIDQPQRFGNKAFAQWLNKIGECVETELQKALPEKFHAAIPEI 139
+F L F P W + I V + K H
Sbjct: 373 KMFDRLSVFPP--SAHIPTILLSLI-------WFDVIKSDVMVVVN-----KLHKY---- 414
Query: 140 SVYLKESFGNSTRIDYGTGHEMAFCMFLLCLFRIGAFSMNDRVAVVNRIFVRYLDLVRRL 199
S+ K+ ++ I + ++ + ++R V + ++ +
Sbjct: 415 SLVEKQPKESTISI-----PS------IYLELKV----KLENEYALHRSIVDHYNIPKTF 459
Query: 200 QCEYRMEPAGSHGVWSLDDYQFVPFIWGSSQLFG----NKDEIEPNMFLLERTVLDHRDK 255
+ + P LD Y + G N + E M L LD R
Sbjct: 460 DSDDLIPP-------YLDQYFY--------SHIGHHLKNIEHPE-RMTLFRMVFLDFR-- 501
Query: 256 YMFLACIQYIMKVKTGHFSEHSNQLWNISALPSWSKINQGLLKMYKG 302
FL K++ H + WN S + + Q LK YK
Sbjct: 502 --FLE-----QKIR------HDSTAWNASG-SILNTLQQ--LKFYKP 532
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.050
Identities = 41/218 (18%), Positives = 62/218 (28%), Gaps = 87/218 (39%)
Query: 4 PGPGHRRLDLAFSSKNAVGPDHVYAIPKRQVLKDSDMKQWENSEAY-HEYQGF-ILSM-- 59
G G +DL +SK A + V W ++ + + GF IL +
Sbjct: 1629 QGMG---MDLYKTSKAA-----------QDV--------WNRADNHFKDTYGFSILDIVI 1666
Query: 60 ---------NEAVRGKAI---------DTRLEPSNNVMSVFQML-EHFNKLIDETPPIDQ 100
+GK I +T ++ +F+ + EH +
Sbjct: 1667 NNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE---- 1722
Query: 101 PQRFGNKAFAQWLNKIGECVETEL-QKALPEKFHAAIPEISVY--LKESFGNSTRIDYGT 157
G T+ Q AL + E + + LK G
Sbjct: 1723 ---------------KGLLSATQFTQPAL-----TLM-EKAAFEDLKSK-GLIPADATFA 1760
Query: 158 GH---E-MAFCMFLLCLFRIGAFSMNDRVAVVNRIFVR 191
GH E A L L S+ V VV F R
Sbjct: 1761 GHSLGEYAA----LASL--ADVMSIESLVEVV---FYR 1789
Score = 32.7 bits (74), Expect = 0.21
Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 35/116 (30%)
Query: 27 YAIPKRQVLKDSDMKQWENSEAYH---EY-----QGFILSMNEAV-----RGKAIDTRLE 73
A + LK + + + A H EY ++S+ V RG + +
Sbjct: 1741 KAA--FEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVP 1798
Query: 74 PSNNVMSVFQMLEHFNKLIDETPPIDQPQR----FGNKAFAQWLNKI----GECVE 121
S + M+ I+ P R F +A + ++ G VE
Sbjct: 1799 RDELGRSNYGMIA-----IN-------PGRVAASFSQEALQYVVERVGKRTGWLVE 1842
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for
structural genomics, JCSG, protein structu initiative,
PSI; HET: MLY; 1.90A {Thermotoga maritima}
Length = 284
Score = 29.4 bits (65), Expect = 1.4
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 105 GNKAFAQWLNKIGECVETELQKALPEKFHAAIPE 138
+K + E VE +++ L + E
Sbjct: 3 SDKIHHHHHHMKXEXVEERIREILRPGWDLLTEE 36
>2nuh_A Periplasmic divalent cation tolerance protein; CUTA, unknown
function; 1.39A {Xylella fastidiosa}
Length = 118
Score = 26.7 bits (59), Expect = 5.8
Identities = 11/69 (15%), Positives = 19/69 (27%), Gaps = 22/69 (31%)
Query: 78 VMSVFQMLEHFNKLID--------ETP-----PIDQPQRFGNKAFAQWLNKIGECVETEL 124
+ + H N I P + G + W+N E +
Sbjct: 57 QLLIKTNAVHVNAAITRLCALHPYRLPEAIAVQVSV----GLPEYLTWINT-----EIDE 107
Query: 125 QKALPEKFH 133
+ +LP H
Sbjct: 108 EYSLPHHHH 116
>2lep_A Rhomboid protease GLPG 1; cell membrane, cytosol, membrane protein,
micelles, serine P domain swapping, hydrolase; NMR
{Escherichia coli}
Length = 69
Score = 25.1 bits (55), Expect = 7.9
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 7/51 (13%)
Query: 171 FRIGAFSMNDRVAVVNRIFVRYLDLVRRLQCEYRMEPAGSHGVWSLDDYQF 221
I +F+ N RVA + FV Y+ ++ VW D+ Q
Sbjct: 2 LMITSFA-NPRVA---QAFVDYM---ATQGVILTIQQHNQSDVWLADESQA 45
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate
synthase, trans; 1.65A {Pyrobaculum calidifontis}
Length = 358
Score = 27.3 bits (61), Expect = 8.0
Identities = 8/37 (21%), Positives = 12/37 (32%)
Query: 107 KAFAQWLNKIGECVETELQKALPEKFHAAIPEISVYL 143
++ K G VE L + L E +Y
Sbjct: 4 DVVSRLHQKYGAEVEKALVRYLSIGLAEDFREAVLYQ 40
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium, two domain; 2.30A {Rhizobium etli}
Length = 330
Score = 27.0 bits (60), Expect = 8.4
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 42 QWENSEAYHEYQGFILSMNEAVRGKAIDTRLEPSNNVMSVF 82
+ +E EY E ++ D + P +V F
Sbjct: 277 RLTFAEPEQEYPSLYRRFAEIIKAGKSDVDVAPLRHVADAF 317
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.430
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,941,371
Number of extensions: 284430
Number of successful extensions: 468
Number of sequences better than 10.0: 1
Number of HSP's gapped: 458
Number of HSP's successfully gapped: 14
Length of query: 319
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 225
Effective length of database: 4,077,219
Effective search space: 917374275
Effective search space used: 917374275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.8 bits)