RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16836
(319 letters)
>d2ixma1 a.268.1.1 (A:23-322) Serine/threonine-protein phosphatase
2A regulatory subunit B', PTPA {Human (Homo sapiens)
[TaxId: 9606]}
Length = 300
Score = 395 bits (1017), Expect = e-140
Identities = 153/285 (53%), Positives = 206/285 (72%), Gaps = 1/285 (0%)
Query: 27 YAIPKRQVLKDSDMKQWENSEAYHEYQGFILSMNEAVRGKAIDTRLEPSNNVMSVFQMLE 86
+ IPK+++ DM +W+ S+AY +Y GFIL++NE V+GK + S + + +L
Sbjct: 1 FIIPKKEIHTVPDMGKWKRSQAYADYIGFILTLNEGVKGKKLTFEYRVSEAIEKLLALLN 60
Query: 87 HFNKLIDETPPIDQPQRFGNKAFAQWLNKIGECVETELQKALPEKFHAAIPEISVYLKES 146
++ IDETPP+DQP RFGNKA+ W K+ E E + +P AA+PE++VYLKES
Sbjct: 61 TLDRWIDETPPVDQPSRFGNKAYRTWYAKLDEEAENLVATVVPTHLAAAVPEVAVYLKES 120
Query: 147 FGNSTRIDYGTGHEMAFCMFLLCLFRIGAFSMNDRVAVVNRIFVRYLDLVRRLQCEYRME 206
GNSTRIDYGTGHE AF FL CL +IG ++D++A+V ++F RYL+++R+LQ YRME
Sbjct: 121 VGNSTRIDYGTGHEAAFAAFLCCLCKIGVLRVDDQIAIVFKVFNRYLEVMRKLQKTYRME 180
Query: 207 PAGSHGVWSLDDYQFVPFIWGSSQLFGNKDEIEPNMFLLERTVLDHRDKYMFLACIQYIM 266
PAGS GVW LDD+QF+PFIWGSSQL + +EP F+ E+ V ++ YMFL CI +I
Sbjct: 181 PAGSQGVWGLDDFQFLPFIWGSSQLIDHPY-LEPRHFVDEKAVNENHKDYMFLECILFIT 239
Query: 267 KVKTGHFSEHSNQLWNISALPSWSKINQGLLKMYKGEVLAKFPVI 311
++KTG F+EHSNQLWNISA+PSWSK+NQGL++MYK E L KFPVI
Sbjct: 240 EMKTGPFAEHSNQLWNISAVPSWSKVNQGLIRMYKAECLEKFPVI 284
>d2ixoa1 a.268.1.1 (A:2-317) Serine/threonine-protein phosphatase 2A
regulatory subunit B', PTPA {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 316
Score = 373 bits (960), Expect = e-131
Identities = 103/295 (34%), Positives = 164/295 (55%), Gaps = 7/295 (2%)
Query: 23 PDHVYAIPKRQVLKDSDMKQWENSEAYHEYQGFILSMNEAVRGKAIDTRLEPSN---NVM 79
P ++ P +++ +++S A H + + + + ++ V
Sbjct: 8 PHATFSTPVKRIFDTQTTLDFQSSLAIHRIKYHLHKYTTLISHCSDPDPHATASSIAMVN 67
Query: 80 SVFQMLEHFNKLIDETPPIDQPQRFGNKAFAQWLNKIGECVETELQKALPEKFHAAIPEI 139
+ +L+ LIDETPP+ P+R+GN A +W +K+ E + LQ+ LP ++H +PE+
Sbjct: 68 GLMGVLDKLAHLIDETPPLPGPRRYGNLACREWHHKLDERLPQWLQEMLPSEYHEVVPEL 127
Query: 140 SVYLKESFGNSTRIDYGTGHEMAFCMFLLCLFRIGAFSMNDRVAVVNRIFVRYLDLVRRL 199
YL SFG+STR+DYGTGHE++F + L +G F + V +F +Y ++RRL
Sbjct: 128 QYYLGNSFGSSTRLDYGTGHELSFMATVAALDMLGMFPHHRGADVF-LLFNKYYTIMRRL 186
Query: 200 QCEYRMEPAGSHGVWSLDDYQFVPFIWGSSQLFGNKDE--IEPNMFLLERTVLDHRDKYM 257
Y +EPAGSHGVW LDD+ + +I GSSQ + ++P L + V +++D
Sbjct: 187 ILTYTLEPAGSHGVWGLDDHFHLVYILGSSQWQLLDAQAPLQPREILDKSLVREYKDTNF 246
Query: 258 FLACIQYIMKVKTGHFSEHSNQLWNIS-ALPSWSKINQGLLKMYKGEVLAKFPVI 311
+ I +I +VK G F EHS L++I+ +P WSK+ +GLLKMY EV KFPV+
Sbjct: 247 YCQGINFINEVKMGPFEEHSPILYDIAVTVPRWSKVCKGLLKMYSVEVEKKFPVV 301
>d2ixna1 a.268.1.1 (A:3-299) Serine/threonine-protein phosphatase 2A
regulatory subunit B', PTPA {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 297
Score = 357 bits (917), Expect = e-125
Identities = 100/287 (34%), Positives = 162/287 (56%), Gaps = 6/287 (2%)
Query: 30 PKRQVLKDSDMKQWENSEAYHEYQGFILSMNEAVRGKAI-DTRLEPSNNVMSVFQMLEHF 88
P++++L DMK WE S + FI+ + E+V+G + S ++ S+ +L
Sbjct: 1 PEKRLLTPDDMKLWEESPTRAHFTKFIIDLAESVKGHENSQYKEPISESINSMMNLLSQI 60
Query: 89 NKLIDETPPI--DQPQRFGNKAFAQWLNKIGECVETELQKALPEKFHAAIPEISVYLKES 146
+ + P I RFG F + +++ L+ P + ++S+YL ES
Sbjct: 61 KDITQKHPVIKDADSSRFGKVEFRDFYDEVSRNSRKILRSEFPSLTDEQLEQLSIYLDES 120
Query: 147 FGNSTRIDYGTGHEMAFCMFLLCLFRIGAFSM-NDRVAVVNRIFVRYLDLVRRLQCEYRM 205
+GN RIDYG+GHE+ F L L+ G F++ ND +V ++F+ YL ++R L+ +Y +
Sbjct: 121 WGNKRRIDYGSGHELNFMCLLYGLYSYGIFNLSNDSTNLVLKVFIEYLKIMRILETKYWL 180
Query: 206 EPAGSHGVWSLDDYQFVPFIWGSSQLFGNKDEIEPNMFLLERTVLDHRDKYMFLACIQYI 265
EPAGSHGVW LDDY F+PF++G+ QL +K ++P V +Y++ CI +I
Sbjct: 181 EPAGSHGVWGLDDYHFLPFLFGAFQLTTHKH-LKPISIHNNELVEMFAHRYLYFGCIAFI 239
Query: 266 MKVK-TGHFSEHSNQLWNISALPSWSKINQGLLKMYKGEVLAKFPVI 311
KVK + HS L +IS + +WSK+ +G++KMYK EVL+K P++
Sbjct: 240 NKVKSSASLRWHSPMLDDISGVKTWSKVAEGMIKMYKAEVLSKLPIM 286
>d2ibna1 a.211.1.4 (A:37-285) Myo-inositol oxygenase MioX {Human
(Homo sapiens) [TaxId: 9606]}
Length = 249
Score = 26.7 bits (59), Expect = 3.3
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 66 KAIDTRLEPSNNVMSVFQMLEHFNKLIDE-TPPIDQPQ 102
S M+V + ++ + L+DE P +D P
Sbjct: 22 SKHAQFGGFSYKKMTVMEAVDLLDGLVDESDPDVDFPN 59
>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase
{Thermotoga maritima [TaxId: 2336]}
Length = 376
Score = 27.0 bits (58), Expect = 3.4
Identities = 13/94 (13%), Positives = 25/94 (26%)
Query: 200 QCEYRMEPAGSHGVWSLDDYQFVPFIWGSSQLFGNKDEIEPNMFLLERTVLDHRDKYMFL 259
P G + P I G Q G + + ++
Sbjct: 200 SAHKFHGPKGVGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELS 259
Query: 260 ACIQYIMKVKTGHFSEHSNQLWNISALPSWSKIN 293
+++ K+++ S N +I S N
Sbjct: 260 EAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPN 293
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.430
Gapped
Lambda K H
0.267 0.0612 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,217,939
Number of extensions: 56374
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 10
Length of query: 319
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 234
Effective length of database: 1,240,546
Effective search space: 290287764
Effective search space used: 290287764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.4 bits)