BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy16837
         (204 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4I4A|A Chain A, Crystal Structure Of Plu4264 Protein From Photorhabdus
          Luminescens
 pdb|4I4A|B Chain B, Crystal Structure Of Plu4264 Protein From Photorhabdus
          Luminescens
          Length = 128

 Score = 29.3 bits (64), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 71 YGASQCSLRPEPKPWLHVSNDYELKI 96
          +G + C +RPE K + H  N+YEL I
Sbjct: 34 FGGAWCIVRPETKSFRHSHNEYELFI 59


>pdb|3UYS|A Chain A, Crystal Structure Of Apo Human Ck1d
 pdb|3UYS|B Chain B, Crystal Structure Of Apo Human Ck1d
 pdb|3UYS|C Chain C, Crystal Structure Of Apo Human Ck1d
 pdb|3UYS|D Chain D, Crystal Structure Of Apo Human Ck1d
 pdb|3UYT|A Chain A, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
           Form
 pdb|3UYT|B Chain B, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
           Form
 pdb|3UYT|C Chain C, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
           Form
 pdb|3UYT|D Chain D, Crystal Structure Of Ck1d With Pf670462 From P1 Crystal
           Form
 pdb|3UZP|A Chain A, Crystal Structure Of Ck1d With Pf670462 From P21 Crystal
           Form
 pdb|3UZP|B Chain B, Crystal Structure Of Ck1d With Pf670462 From P21 Crystal
           Form
 pdb|4HNF|A Chain A, Crystal Structure Of Ck1d In Complex With Pf4800567
 pdb|4HNF|B Chain B, Crystal Structure Of Ck1d In Complex With Pf4800567
 pdb|4HGT|A Chain A, Crystal Structure Of Ck1d With Compound 13
 pdb|4HGT|B Chain B, Crystal Structure Of Ck1d With Compound 13
          Length = 296

 Score = 28.9 bits (63), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 14/58 (24%), Positives = 25/58 (43%)

Query: 14  GQWPCLEYKAANKRRSHPRLTARHGDTPLPTIVSAQPPSGGAFYNYLSAWSTNDALSY 71
           G  P    KAA KR+ + R++ +   TP+  +    P     + N+  +   +D   Y
Sbjct: 211 GSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDY 268


>pdb|1CKJ|A Chain A, Casein Kinase I Delta Truncation Mutant Containing
           Residues 1-317 Complex With Bound Tungstate
 pdb|1CKJ|B Chain B, Casein Kinase I Delta Truncation Mutant Containing
           Residues 1-317 Complex With Bound Tungstate
 pdb|1CKI|A Chain A, Recombinant Casein Kinase I Delta Truncation Mutant
           Containing Residues 1-317
 pdb|1CKI|B Chain B, Recombinant Casein Kinase I Delta Truncation Mutant
           Containing Residues 1-317
          Length = 317

 Score = 28.9 bits (63), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 14/58 (24%), Positives = 25/58 (43%)

Query: 14  GQWPCLEYKAANKRRSHPRLTARHGDTPLPTIVSAQPPSGGAFYNYLSAWSTNDALSY 71
           G  P    KAA KR+ + R++ +   TP+  +    P     + N+  +   +D   Y
Sbjct: 209 GSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDY 266


>pdb|4HNI|A Chain A, Crystal Structure Of Ck1e In Complex With Pf4800567
 pdb|4HNI|B Chain B, Crystal Structure Of Ck1e In Complex With Pf4800567
 pdb|4HOK|A Chain A, Crystal Structure Of Apo Ck1e
 pdb|4HOK|C Chain C, Crystal Structure Of Apo Ck1e
 pdb|4HOK|E Chain E, Crystal Structure Of Apo Ck1e
 pdb|4HOK|G Chain G, Crystal Structure Of Apo Ck1e
 pdb|4HOK|I Chain I, Crystal Structure Of Apo Ck1e
 pdb|4HOK|K Chain K, Crystal Structure Of Apo Ck1e
 pdb|4HOK|M Chain M, Crystal Structure Of Apo Ck1e
 pdb|4HOK|O Chain O, Crystal Structure Of Apo Ck1e
 pdb|4HOK|Q Chain Q, Crystal Structure Of Apo Ck1e
 pdb|4HOK|S Chain S, Crystal Structure Of Apo Ck1e
 pdb|4HOK|U Chain U, Crystal Structure Of Apo Ck1e
 pdb|4HOK|W Chain W, Crystal Structure Of Apo Ck1e
          Length = 296

 Score = 28.9 bits (63), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 14/58 (24%), Positives = 25/58 (43%)

Query: 14  GQWPCLEYKAANKRRSHPRLTARHGDTPLPTIVSAQPPSGGAFYNYLSAWSTNDALSY 71
           G  P    KAA KR+ + R++ +   TP+  +    P     + N+  +   +D   Y
Sbjct: 211 GSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFSTYLNFCRSLRFDDKPDY 268


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.460 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,542,148
Number of Sequences: 62578
Number of extensions: 225521
Number of successful extensions: 329
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 325
Number of HSP's gapped (non-prelim): 4
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)