BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16837
(204 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P18502|PTC_DROME Protein patched OS=Drosophila melanogaster GN=ptc PE=2 SV=2
Length = 1286
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 73/104 (70%)
Query: 55 AFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDYELKIPKSAPLIYAQIPVSLNNL 114
AFYNYLSAW+TND +YGASQ L PEP+ + H N+Y+LKIPKS PL+YAQ+P L+ L
Sbjct: 850 AFYNYLSAWATNDVFAYGASQGKLYPEPRQYFHQPNEYDLKIPKSLPLVYAQMPFYLHGL 909
Query: 115 YTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFK 158
T I LI +R + ++E GLPNYPSGI F FW+Q+ +
Sbjct: 910 TDTSQIKTLIGHIRDLSVKYEGFGLPNYPSGIPFIFWEQYMTLR 953
>sp|Q61115|PTC1_MOUSE Protein patched homolog 1 OS=Mus musculus GN=Ptch1 PE=2 SV=1
Length = 1434
Score = 107 bits (266), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 70/115 (60%), Gaps = 4/115 (3%)
Query: 55 AFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDY----ELKIPKSAPLIYAQIPVS 110
AFY YL+AW +ND ++Y ASQ ++RP W+H DY L+IP + P+ YAQ P
Sbjct: 904 AFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETRLRIPAAEPIEYAQFPFY 963
Query: 111 LNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAI 165
LN L T D E I +VR IC+ + S GL +YP+G F FW+Q+ + + L+I
Sbjct: 964 LNGLRDTSDFVEAIEKVRVICNNYTSLGLSSYPNGYPFLFWEQYISLRHWLLLSI 1018
>sp|Q90693|PTC1_CHICK Protein patched homolog 1 OS=Gallus gallus GN=PTCH1 PE=1 SV=1
Length = 1442
Score = 106 bits (265), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 49/116 (42%), Positives = 70/116 (60%), Gaps = 4/116 (3%)
Query: 54 GAFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDY----ELKIPKSAPLIYAQIPV 109
AFY YL+AW +ND ++Y ASQ ++RP W+H DY L+IP + P+ YAQ P
Sbjct: 916 NAFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETRLRIPAAEPIEYAQFPF 975
Query: 110 SLNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAI 165
LN L T D E I +VR IC+ + S G+ +YP+G F FW+Q+ + + L+I
Sbjct: 976 YLNGLRETSDFVEAIEKVRAICNNYTSLGIASYPNGYPFLFWEQYIGLRHWLLLSI 1031
>sp|Q98864|PTC1_DANRE Protein patched homolog 1 OS=Danio rerio GN=ptch1 PE=2 SV=1
Length = 1220
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 68/119 (57%), Gaps = 5/119 (4%)
Query: 50 PPSGGAFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSND---YELKIPKSAPLIYAQ 106
PP FY YL+ W +ND L Y ASQ + P P+ W+H D L+IP + PL +AQ
Sbjct: 905 PPE--VFYIYLTVWVSNDPLGYAASQANFYPHPREWIHDKYDTTGENLRIPAAEPLEFAQ 962
Query: 107 IPVSLNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAI 165
P LN L D E I VR IC+EF +G+ NYP+G F FW+Q+ + +F L+I
Sbjct: 963 FPFYLNGLRQASDFIEAIESVRTICEEFMRQGIKNYPNGYPFLFWEQYIGLRHWFLLSI 1021
>sp|Q13635|PTC1_HUMAN Protein patched homolog 1 OS=Homo sapiens GN=PTCH1 PE=1 SV=2
Length = 1447
Score = 104 bits (260), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 68/115 (59%), Gaps = 4/115 (3%)
Query: 55 AFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDY----ELKIPKSAPLIYAQIPVS 110
AFY YL+AW +ND ++Y ASQ ++RP W+H DY L+IP + P+ YAQ P
Sbjct: 918 AFYIYLTAWVSNDPVAYAASQANIRPHRPEWVHDKADYMPETRLRIPAAEPIEYAQFPFY 977
Query: 111 LNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAI 165
LN L T D E I +VR IC + S GL +YP+G F FW+Q+ + + L I
Sbjct: 978 LNGLRDTSDFVEAIEKVRTICSNYTSLGLSSYPNGYPFLFWEQYIGLRHWLLLFI 1032
>sp|Q09614|PTC1_CAEEL Protein patched homolog 1 OS=Caenorhabditis elegans GN=ptc-1 PE=1
SV=2
Length = 1408
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 56/99 (56%)
Query: 56 FYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDYELKIPKSAPLIYAQIPVSLNNLY 115
FYNYL+AW D + Y SQ S P P W N E IP + PL Y+QIP L L
Sbjct: 1078 FYNYLTAWFNVDHMMYYVSQASFFPTPPKWELSKNHTENFIPAAEPLAYSQIPFYLTGLT 1137
Query: 116 TTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQF 154
T I + I +R +C+ F +GLPN+P GI F FW+Q+
Sbjct: 1138 DTAVIVDAIKDIRSVCERFTDQGLPNFPQGIAFTFWEQY 1176
>sp|O35595|PTC2_MOUSE Protein patched homolog 2 OS=Mus musculus GN=Ptch2 PE=2 SV=2
Length = 1182
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 56 FYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSND---YELKIPKSAPLIYAQIPVSLN 112
FY L+ W ++D L ASQ + P P WLH D L+IP + PL +AQ P L+
Sbjct: 856 FYMGLTVWVSSDPLGLAASQANFYPPPPEWLHDKYDTTGENLRIPAAQPLEFAQFPFLLH 915
Query: 113 NLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAI 165
L T D E I R C E G+ YPSG F FW+Q+ + F LA+
Sbjct: 916 GLQKTADFVEAIEGARAACTEAGQAGVHAYPSGSPFLFWEQYLGLRRCFLLAV 968
>sp|Q9Y6C5|PTC2_HUMAN Protein patched homolog 2 OS=Homo sapiens GN=PTCH2 PE=2 SV=2
Length = 1203
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 56 FYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSND---YELKIPKSAPLIYAQIPVSLN 112
FY L+ W ++D L ASQ + P P WLH D L+IP + PL +AQ P L
Sbjct: 856 FYMGLTVWVSSDPLGLAASQANFYPPPPEWLHDKYDTTGENLRIPPAQPLEFAQFPFLLR 915
Query: 113 NLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAI 165
L T D E I R C E G+ YPSG F FW+Q+ + F LA+
Sbjct: 916 GLQKTADFVEAIEGARAACAEAGQAGVHAYPSGSPFLFWEQYLGLRRCFLLAV 968
>sp|Q6CE96|MED7_YARLI Mediator of RNA polymerase II transcription subunit 7 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=MED7 PE=3 SV=1
Length = 235
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 39 DTPLPTIVSAQPPSGGAFYNYLSAWSTNDALS 70
+ PL + PP GA++N+ W ND L+
Sbjct: 46 EAPLKYLTPPSPPEAGAYHNFGDVWQVNDKLA 77
>sp|Q2H0U8|CHO2_CHAGB Phosphatidylethanolamine N-methyltransferase OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=CHO2 PE=3 SV=1
Length = 946
Score = 31.2 bits (69), Expect = 4.8, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
Query: 82 PKPWLH--VSNDYELKIPKSAPLIYAQIPVSLNNLYTTRDITELITQVRGICD 132
P+PWL+ + N+ E KIPK + A+ P+ N R + +LI +CD
Sbjct: 151 PRPWLYQLLQNELEAKIPKDYKM--AEAPLEYNTWLVFRRVVDLIL----MCD 197
>sp|Q6ZNG1|ZN600_HUMAN Zinc finger protein 600 OS=Homo sapiens GN=ZNF600 PE=1 SV=2
Length = 722
Score = 31.2 bits (69), Expect = 5.1, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 64 STNDALSYGASQCSLRPEPKPWLHVSNDYELKIPKSAPLIYAQ 106
ST+DA S SQ R P+P +H+SN+Y P S+ L Q
Sbjct: 114 STSDAPSVSTSQ---RISPRPQIHISNNYGNNSPNSSLLPQKQ 153
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,152,983
Number of Sequences: 539616
Number of extensions: 3794815
Number of successful extensions: 15948
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 15585
Number of HSP's gapped (non-prelim): 294
length of query: 204
length of database: 191,569,459
effective HSP length: 112
effective length of query: 92
effective length of database: 131,132,467
effective search space: 12064186964
effective search space used: 12064186964
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)