Query psy16837
Match_columns 204
No_of_seqs 61 out of 63
Neff 3.1
Searched_HMMs 46136
Date Fri Aug 16 23:18:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16837.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16837hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1935|consensus 100.0 3.6E-51 7.7E-56 401.6 5.2 138 30-170 785-929 (1143)
2 TIGR00918 2A060602 The Eukaryo 100.0 4.2E-31 9E-36 266.5 8.8 138 30-167 825-973 (1145)
3 TIGR00917 2A060601 Niemann-Pic 99.2 6E-11 1.3E-15 121.4 8.4 108 51-166 947-1055(1204)
4 PF02460 Patched: Patched fami 97.0 0.00066 1.4E-08 66.4 4.0 69 98-168 586-654 (798)
5 KOG1933|consensus 86.2 0.81 1.8E-05 48.9 4.0 62 101-162 959-1022(1201)
6 KOG1934|consensus 80.3 3.8 8.3E-05 42.5 6.0 65 101-167 621-685 (868)
7 PF03176 MMPL: MMPL family; I 61.7 16 0.00036 31.7 4.9 57 105-161 88-145 (333)
8 PF00586 AIRS: AIR synthase re 50.8 22 0.00049 25.7 3.4 41 94-135 48-88 (96)
9 KOG2204|consensus 40.8 28 0.00061 35.3 3.3 46 110-156 341-388 (625)
10 PRK14745 RepA leader peptide T 39.2 21 0.00046 22.4 1.4 12 153-164 6-17 (26)
11 PRK07395 L-aspartate oxidase; 35.1 70 0.0015 30.9 5.0 59 110-168 443-513 (553)
12 KOG4163|consensus 32.4 76 0.0017 31.8 4.7 63 90-152 332-402 (551)
13 PRK06069 sdhA succinate dehydr 30.6 1.3E+02 0.0029 28.9 6.0 62 107-169 459-520 (577)
14 smart00386 HAT HAT (Half-A-TPR 29.2 56 0.0012 17.9 2.1 29 124-158 3-31 (33)
15 PF10853 DUF2650: Protein of u 27.1 51 0.0011 22.1 1.8 18 153-170 20-37 (38)
16 PRK06474 hypothetical protein; 26.8 1.1E+02 0.0024 25.5 4.2 33 101-137 126-158 (178)
17 PRK08626 fumarate reductase fl 25.8 1.4E+02 0.0031 29.6 5.4 62 107-169 475-536 (657)
18 PRK08641 sdhA succinate dehydr 24.6 1.6E+02 0.0035 28.6 5.5 57 112-169 464-520 (589)
19 cd02978 KaiB_like KaiB-like fa 24.1 80 0.0017 23.6 2.6 27 107-135 4-30 (72)
20 TIGR03475 tap_IncFII_lead RepA 23.4 57 0.0012 20.5 1.4 13 153-165 6-18 (26)
21 PF00690 Cation_ATPase_N: Cati 22.0 1.3E+02 0.0029 20.7 3.3 31 138-168 34-68 (69)
22 COG1528 Ftn Ferritin-like prot 21.7 1.6E+02 0.0035 25.4 4.3 38 118-159 125-162 (167)
23 cd02038 FleN-like FleN is a me 20.7 1.5E+02 0.0032 22.9 3.6 34 108-141 101-134 (139)
24 smart00545 JmjN Small domain f 20.1 60 0.0013 21.9 1.2 27 108-134 3-29 (42)
No 1
>KOG1935|consensus
Probab=100.00 E-value=3.6e-51 Score=401.64 Aligned_cols=138 Identities=41% Similarity=0.677 Sum_probs=133.4
Q ss_pred cceeecCCCCCCCCCccccC-------CCCchhhhhhhhccccCCCcccccccCCCCCCCCCCcccCCccccccCCCCCe
Q psy16837 30 HPRLTARHGDTPLPTIVSAQ-------PPSGGAFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDYELKIPKSAPL 102 (204)
Q Consensus 30 ~LLvQTG~~~~Pin~~~l~~-------~I~p~aFYnYLTaW~snD~l~Y~aSQan~~P~Pp~W~h~~~d~~l~IP~A~PL 102 (204)
+|++|||+.+| |.+||++ +|||++||||||||+|||+|+|+||||++||+||+|.|+ ++++..||++|||
T Consensus 785 kL~~qtG~~~~--~~~~l~k~rlVd~giInp~~FYnyLTaW~~~D~~~y~aSQa~~yP~pP~w~h~-~~~~~~iP~aePl 861 (1143)
T KOG1935|consen 785 KLLCQTGSLDN--DAGRLGKIRLVDAGIINPEAFYNYLTAWFNNDPMAYYASQASFYPTPPEWEHD-NDYAKEIPAAEPL 861 (1143)
T ss_pred HHHHhcCCccc--hhHhhhhhhhhhccccCHHHHHHhhhhhcccchHHhhhhccCCCCCCcccccc-ccccccccccccc
Confidence 59999999999 8888876 499999999999999999999999999999999999999 9999999999999
Q ss_pred eeeecceeecCCCCchHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhhhHhHhHHHHHHHHhhhccc
Q psy16837 103 IYAQIPVSLNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAILMGAP 170 (204)
Q Consensus 103 ~yaQ~PFYL~gL~~T~diveaI~~VRaICdeyt~~GlpnyPsG~PF~FWEQYL~LR~~L~lAI~iia~ 170 (204)
+|+||||||+||++|++|+|+|++||++|++|+.+||||||+|+||+|||||+.||++|+++|+|++.
T Consensus 862 ~yaQmPFyL~gL~dTa~Ivk~I~~iR~~c~~~~s~Gl~nyPsGiPF~FWEQYl~Lrg~l~~~IcIil~ 929 (1143)
T KOG1935|consen 862 EYAQMPFYLNGLTDTADIVKAIESIRASCEEYTSLGLPNYPSGIPFTFWEQYLTLRGNLLQAICIILL 929 (1143)
T ss_pred hhccCchHHhhhhhHHHHHHHHHHHHHHHhhcccCCCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999864
No 2
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=99.97 E-value=4.2e-31 Score=266.51 Aligned_cols=138 Identities=42% Similarity=0.804 Sum_probs=129.3
Q ss_pred cceeecCCCCCCCCCccccC--------CCCchhhhhhhhccccCCCcccccccCCCCCCCCCCcccCCccc---cccCC
Q psy16837 30 HPRLTARHGDTPLPTIVSAQ--------PPSGGAFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDYE---LKIPK 98 (204)
Q Consensus 30 ~LLvQTG~~~~Pin~~~l~~--------~I~p~aFYnYLTaW~snD~l~Y~aSQan~~P~Pp~W~h~~~d~~---l~IP~ 98 (204)
+|++|||+.++|+|++++++ +++|++||+||++|+++|+++|++||++++|+||+|.|++++.+ ++||+
T Consensus 825 ~l~~qtg~~~~p~~~~~~~~~r~v~~~g~~~~~~F~~yL~~wl~~~~~~y~~sq~~~~p~~~~~~~~~~~~~~~~~~I~a 904 (1145)
T TIGR00918 825 KLLVQTGHRDKPVDKEQLTTQRLVNADGIINPNAFYIYLSAWVSNDPVAYAASQANIYPHPPEWLHDKNDYDPENLRIPA 904 (1145)
T ss_pred hhcccccccCCccccccccccccccccCCCCHHHHHHHHHHHHcCCcchhhcccccccCCcchhcccccccccccccccc
Confidence 58999999999999998654 48899999999999999999999999999999999999987642 67999
Q ss_pred CCCeeeeecceeecCCCCchHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhhhHhHhHHHHHHHHhhh
Q psy16837 99 SAPLIYAQIPVSLNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAILM 167 (204)
Q Consensus 99 A~PL~yaQ~PFYL~gL~~T~diveaI~~VRaICdeyt~~GlpnyPsG~PF~FWEQYL~LR~~L~lAI~i 167 (204)
++|++|+||+||+++|++++|++++++++|+|+++++..|++.||.|++|+|||||+.++..+++.+++
T Consensus 905 s~~i~~~~F~fy~~~L~~~~d~i~al~~~R~Ia~~~~~~~~~vf~~g~~fvf~eQy~~i~~~~~~~l~~ 973 (1145)
T TIGR00918 905 AEPLEYAQFPFYLNGLRETSQFVEAIEHVRAICNNYEGFGLPSYPSGYPFLFWEQYMGLRHWLLLSISV 973 (1145)
T ss_pred cccchhheeeEEEcCCCCHHHHHHHHHHHHHHHHhhhhcCceeccCCCceeHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999989999999999999999999999998777666
No 3
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=99.17 E-value=6e-11 Score=121.44 Aligned_cols=108 Identities=15% Similarity=0.192 Sum_probs=84.0
Q ss_pred CCchhhhhhhhccccCCCcccccccCCCCCCCCCCcccCCccccccCCCCCeeeeecceeecCCCCchHHHHHHHHHHHH
Q psy16837 51 PSGGAFYNYLSAWSTNDALSYGASQCSLRPEPKPWLHVSNDYELKIPKSAPLIYAQIPVSLNNLYTTRDITELITQVRGI 130 (204)
Q Consensus 51 I~p~aFYnYLTaW~snD~l~Y~aSQan~~P~Pp~W~h~~~d~~l~IP~A~PL~yaQ~PFYL~gL~~T~diveaI~~VRaI 130 (204)
.+++.||+||..|++.++-.+-+.++. .|+++.-+ +.-....-+.-++|.+|++.|++++|+++++|+.|.|
T Consensus 947 p~~~~F~~~l~~fl~~~~~~~c~~gg~------~~y~~~v~--~~~~~~~~I~aS~f~~~h~~l~~~~d~i~a~~~~R~i 1018 (1204)
T TIGR00917 947 PSTTQFKEYLPFFLNDNPSADCAKGGH------AAYSSAVD--LQGHANTIIQASYFMTYHTPLNTQADFINALRAAREI 1018 (1204)
T ss_pred CCHHHHHHHHHHHhcCCCccccccccc------cccccceE--eecCCCceEEEEEEEEeccCCCCHHHHHHHHHHHHHH
Confidence 346889999999999888777777665 22221111 0000011267789999999999999999999999999
Q ss_pred HHHHHh-cCCCCCCcccchhhhhHhHhHHHHHHHHhh
Q psy16837 131 CDEFES-KGLPNYPSGIIFYFWQQFSQFKMYFFLAIL 166 (204)
Q Consensus 131 Cdeyt~-~GlpnyPsG~PF~FWEQYL~LR~~L~lAI~ 166 (204)
++++++ .+++.||-+..|.|||||+.++..++..++
T Consensus 1019 a~~i~~~~~~~vfpys~~~vf~eQY~~i~~~~~~~l~ 1055 (1204)
T TIGR00917 1019 SANVTRSLKMEVFPYSVFYVFFEQYLTIWSDALINLG 1055 (1204)
T ss_pred HHHhhhccCCccccCcCceehhHHHHHHHHHHHHHHH
Confidence 999985 699999999999999999999987765543
No 4
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=96.99 E-value=0.00066 Score=66.44 Aligned_cols=69 Identities=17% Similarity=0.235 Sum_probs=57.5
Q ss_pred CCCCeeeeecceeecCCCCchHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhhhHhHhHHHHHHHHhhhc
Q psy16837 98 KSAPLIYAQIPVSLNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAILMG 168 (204)
Q Consensus 98 ~A~PL~yaQ~PFYL~gL~~T~diveaI~~VRaICdeyt~~GlpnyPsG~PF~FWEQYL~LR~~L~lAI~ii 168 (204)
....+.-.++.+.++++.++.+.++++++.|+|++++.+.++-.|. ..|.|||||+.++...+..+++.
T Consensus 586 ~~~~I~a~rf~~~~~~~~~~~~~~~~~~~~R~i~~~~~~~~~~~~~--~~~~~~dq~~~i~~~~~~~~~~a 654 (798)
T PF02460_consen 586 DTTQISAFRFTTQLKNLSDWSDRIEAMKDWRQIADKYSDFNVFVFS--PFFIFYDQYLSIVPETIQNIGIA 654 (798)
T ss_pred CccceeeEEEEEEccCCCCHHHHHHHHHHHHHhhhcceecceEeec--cchhhHhhhhhcchHHHHHHHHH
Confidence 3446777888888899999999999999999999999987776665 56778999999999887765543
No 5
>KOG1933|consensus
Probab=86.17 E-value=0.81 Score=48.87 Aligned_cols=62 Identities=13% Similarity=0.280 Sum_probs=55.4
Q ss_pred CeeeeecceeecCCCCchHHHHHHHHHHHHHHHHHh--cCCCCCCcccchhhhhHhHhHHHHHH
Q psy16837 101 PLIYAQIPVSLNNLYTTRDITELITQVRGICDEFES--KGLPNYPSGIIFYFWQQFSQFKMYFF 162 (204)
Q Consensus 101 PL~yaQ~PFYL~gL~~T~diveaI~~VRaICdeyt~--~GlpnyPsG~PF~FWEQYL~LR~~L~ 162 (204)
-++-+++=-|.+.|.+..||+++.+..|.+..+.++ +|+..||--.-|.|-|||+.+-.+.+
T Consensus 959 ~iqas~F~tyh~~l~ns~d~~~alr~ar~~s~~i~r~~~~~~vfpys~fy~fyEqylti~~~~~ 1022 (1201)
T KOG1933|consen 959 GIQASYFMTYHTPLSNSSDFIKALRAARKLSADITRSLKGVEVFPYSVFYSFYEQYLTIWTDTL 1022 (1201)
T ss_pred cchhhhhhhhccccccHHHHHHHHHHhhhhhhhhhhcccccceeeeeeehhHHHHHHHHhhhhh
Confidence 466778888999999999999999999999999887 59999999999999999999876654
No 6
>KOG1934|consensus
Probab=80.31 E-value=3.8 Score=42.46 Aligned_cols=65 Identities=20% Similarity=0.309 Sum_probs=52.7
Q ss_pred CeeeeecceeecCCCCchHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhhhHhHhHHHHHHHHhhh
Q psy16837 101 PLIYAQIPVSLNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAILM 167 (204)
Q Consensus 101 PL~yaQ~PFYL~gL~~T~diveaI~~VRaICdeyt~~GlpnyPsG~PF~FWEQYL~LR~~L~lAI~i 167 (204)
.+.-.++.+=++++.+..+-.++.++.|.|+++|.+-.+-.|=. -|.|-+||+.+....+..+++
T Consensus 621 ~i~~f~f~~~~~~~~~~~~~~~~~~~~R~ia~~~~~fnvtvf~~--~~~f~Dq~~~v~~~ti~~~~~ 685 (868)
T KOG1934|consen 621 IIFAFRFTIGLTNLTKWNERTRLLETWRKIADEYSDFNVTVFDP--SFVFLDQYLSVVPVTIQSIVI 685 (868)
T ss_pred eEEEEEEEEEEeccCCHHHHHHHHHHHHHHHhhccCCCeEEecC--chHHHHHHHHhccHHHHHHHH
Confidence 67788888999999999999999999999999997666622211 178999999998887766554
No 7
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=61.68 E-value=16 Score=31.74 Aligned_cols=57 Identities=21% Similarity=0.203 Sum_probs=44.5
Q ss_pred eecceeecCCCCchHHHHHHHHHHHHHHHHH-hcCCCCCCcccchhhhhHhHhHHHHH
Q psy16837 105 AQIPVSLNNLYTTRDITELITQVRGICDEFE-SKGLPNYPSGIIFYFWQQFSQFKMYF 161 (204)
Q Consensus 105 aQ~PFYL~gL~~T~diveaI~~VRaICdeyt-~~GlpnyPsG~PF~FWEQYL~LR~~L 161 (204)
+.+.-.+++-.++++..+.+++||++.+++. ..|+..|..|.|.+..+..=.+.+.+
T Consensus 88 ~~~~v~~~~~~~~~~~~~~~~~i~~~i~~~~~~~g~~v~~~G~~~~~~~~~~~~~~~~ 145 (333)
T PF03176_consen 88 ALVVVQLKGDPGSQEAQEAVKAIRDIIKEAEKPPGLKVYVTGSPAIAADIQEAIQHDL 145 (333)
T ss_pred EEEEEEecCCcchhhHHHHHHHHHHHHHHhhccCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 3444456655677888899999999999998 57999999999999999555554444
No 8
>PF00586 AIRS: AIR synthase related protein, N-terminal domain; InterPro: IPR000728 This family includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; GO: 0003824 catalytic activity; PDB: 3VIU_A 2Z1T_A 2Z1U_A 3C9U_B 3C9S_A 3C9R_A 1VQV_A 3C9T_B 3M84_A 3QTY_A ....
Probab=50.78 E-value=22 Score=25.75 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=32.0
Q ss_pred cccCCCCCeeeeecceeecCCCCchHHHHHHHHHHHHHHHHH
Q psy16837 94 LKIPKSAPLIYAQIPVSLNNLYTTRDITELITQVRGICDEFE 135 (204)
Q Consensus 94 l~IP~A~PL~yaQ~PFYL~gL~~T~diveaI~~VRaICdeyt 135 (204)
+.-==|+|+ +...-+-+....+..++.++++.+++.|++|.
T Consensus 48 l~a~Ga~P~-~~~~~l~~~~~~~~~~l~~~~~Gi~~~~~~~g 88 (96)
T PF00586_consen 48 LAAMGAKPL-AILDSLGLPNPESPEELKEIVKGIAEACREFG 88 (96)
T ss_dssp HHTTTEEEE-EEEEEEEESTTSBHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCeee-EEEEEEEcCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 444445676 66777777777778899999999999999983
No 9
>KOG2204|consensus
Probab=40.79 E-value=28 Score=35.32 Aligned_cols=46 Identities=26% Similarity=0.398 Sum_probs=38.7
Q ss_pred eecCCCCchHHHHHHHHHHHHHHHHHh-cCC-CCCCcccchhhhhHhHh
Q psy16837 110 SLNNLYTTRDITELITQVRGICDEFES-KGL-PNYPSGIIFYFWQQFSQ 156 (204)
Q Consensus 110 YL~gL~~T~diveaI~~VRaICdeyt~-~Gl-pnyPsG~PF~FWEQYL~ 156 (204)
||+.|+.++.+-|.++.||.+-++.+. +|| |||=+=--= .|-|++.
T Consensus 341 ~LS~ltg~P~~~ekv~~IRk~l~k~ekP~GLypnYinP~sg-~wgq~~t 388 (625)
T KOG2204|consen 341 YLSKLTGNPTFAEKVVKIRKVLNKSEKPHGLYPNYINPSSG-EWGQHHT 388 (625)
T ss_pred HhhhccCCchHHHHHHHHHHHHHhhcCCCCCCcccccCCCC-chhhHHh
Confidence 899999999999999999999999887 799 888432222 8988886
No 10
>PRK14745 RepA leader peptide Tap; Provisional
Probab=39.18 E-value=21 Score=22.40 Aligned_cols=12 Identities=8% Similarity=0.072 Sum_probs=10.3
Q ss_pred HhHhHHHHHHHH
Q psy16837 153 QFSQFKMYFFLA 164 (204)
Q Consensus 153 QYL~LR~~L~lA 164 (204)
||+.|+++|+.-
T Consensus 6 qylfl~hlllpc 17 (26)
T PRK14745 6 QYLFLWHLLLPC 17 (26)
T ss_pred HHHHHHHHHhhc
Confidence 999999998864
No 11
>PRK07395 L-aspartate oxidase; Provisional
Probab=35.08 E-value=70 Score=30.94 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=42.0
Q ss_pred eecCCCCchHHHHHHHHHHHHHHHHHhcCCCCCC------cccch------hhhhHhHhHHHHHHHHhhhc
Q psy16837 110 SLNNLYTTRDITELITQVRGICDEFESKGLPNYP------SGIIF------YFWQQFSQFKMYFFLAILMG 168 (204)
Q Consensus 110 YL~gL~~T~diveaI~~VRaICdeyt~~GlpnyP------sG~PF------~FWEQYL~LR~~L~lAI~ii 168 (204)
|+--.|+.....+++++++.|-+++.+..+.++. ..--| ..|.+++.|+..|.+|-.|+
T Consensus 443 ~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~i~ 513 (553)
T PRK07395 443 SAGICREADTLERAIAQVEQWQQQLAALPLSQFLANLPPGQTVSFNGPDAEQQLRLWAETRNLLDIAYLIL 513 (553)
T ss_pred cccEEEcHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccchhhHHHHHHHHhHHHHHHHHH
Confidence 4445677778888999999998777765444422 22223 45999999999988887775
No 12
>KOG4163|consensus
Probab=32.40 E-value=76 Score=31.78 Aligned_cols=63 Identities=25% Similarity=0.531 Sum_probs=48.3
Q ss_pred CccccccCCC-CCeeeeecceeecCCCCchHHHHHHHHHHHHHHHHHhcCC-------CCCCcccchhhhh
Q psy16837 90 NDYELKIPKS-APLIYAQIPVSLNNLYTTRDITELITQVRGICDEFESKGL-------PNYPSGIIFYFWQ 152 (204)
Q Consensus 90 ~d~~l~IP~A-~PL~yaQ~PFYL~gL~~T~diveaI~~VRaICdeyt~~Gl-------pnyPsG~PF~FWE 152 (204)
+|..|.+|+. .|+..+=+|--.++-.+-+|--+++...++++++....|+ -||-.|.-|.+||
T Consensus 332 DdkGLvLPPrVA~vQvVvvP~git~~~s~~~~~~l~~a~~~v~~~L~~~giR~~~D~rDnytpGwKfnhwE 402 (551)
T KOG4163|consen 332 DDKGLVLPPRVAPVQVVVVPVGITDATSEEDKQELLDACSAVESRLLGAGIRAEADLRDNYTPGWKFNHWE 402 (551)
T ss_pred CCcccccCCcccceEEEEEeccccccCchHHHHHHHHHHHHHHHHHhccCceEeecccccCCCCcccccee
Confidence 3356777654 6888888898888888756666666666777777777776 5999999999999
No 13
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=30.57 E-value=1.3e+02 Score=28.86 Aligned_cols=62 Identities=5% Similarity=0.085 Sum_probs=47.0
Q ss_pred cceeecCCCCchHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhhhHhHhHHHHHHHHhhhcc
Q psy16837 107 IPVSLNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAILMGA 169 (204)
Q Consensus 107 ~PFYL~gL~~T~diveaI~~VRaICdeyt~~GlpnyPsG~PF~FWEQYL~LR~~L~lAI~iia 169 (204)
|-=|+.-+|+....-+++++++.|.+++.+..+......+..- |.+.+.|+..|.+|-.++.
T Consensus 459 m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~a~~~~~ 520 (577)
T PRK06069 459 MDKNFGIFRDESGLAEALKKIKKLRERYKNVRIEDKSRIYNTD-LKDALELDGMLDLAEVVAI 520 (577)
T ss_pred HHHhcccccCHHHHHHHHHHHHHHHHHHHHhcccccccccchh-HHHHHHHHHHHHHHHHHHH
Confidence 4456667788888999999999999888876666666655553 5666789988888877664
No 14
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=29.20 E-value=56 Score=17.88 Aligned_cols=29 Identities=21% Similarity=0.567 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCcccchhhhhHhHhHH
Q psy16837 124 ITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFK 158 (204)
Q Consensus 124 I~~VRaICdeyt~~GlpnyPsG~PF~FWEQYL~LR 158 (204)
++.+|.|.++.- ..+| .--.+|-+|+.+.
T Consensus 3 ~~~~r~i~e~~l----~~~~--~~~~~W~~y~~~e 31 (33)
T smart00386 3 IERARKIYERAL----EKFP--KSVELWLKYAEFE 31 (33)
T ss_pred HHHHHHHHHHHH----HHCC--CChHHHHHHHHHH
Confidence 567788877764 3444 4557899998764
No 15
>PF10853 DUF2650: Protein of unknown function (DUF2650); InterPro: IPR022559 This region is found in proteins with unknown function in metazoa.
Probab=27.05 E-value=51 Score=22.14 Aligned_cols=18 Identities=0% Similarity=0.091 Sum_probs=14.9
Q ss_pred HhHhHHHHHHHHhhhccc
Q psy16837 153 QFSQFKMYFFLAILMGAP 170 (204)
Q Consensus 153 QYL~LR~~L~lAI~iia~ 170 (204)
==.+||.|++++++++++
T Consensus 20 CCf~lq~Wv~v~l~v~~v 37 (38)
T PF10853_consen 20 CCFRLQIWVIVLLAVLGV 37 (38)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 346899999999999875
No 16
>PRK06474 hypothetical protein; Provisional
Probab=26.79 E-value=1.1e+02 Score=25.49 Aligned_cols=33 Identities=6% Similarity=0.282 Sum_probs=28.7
Q ss_pred CeeeeecceeecCCCCchHHHHHHHHHHHHHHHHHhc
Q psy16837 101 PLIYAQIPVSLNNLYTTRDITELITQVRGICDEFESK 137 (204)
Q Consensus 101 PL~yaQ~PFYL~gL~~T~diveaI~~VRaICdeyt~~ 137 (204)
=..|+|.++||+ .+++.|+.++++++-++|.++
T Consensus 126 ~~~~s~~~L~Lt----~ee~~el~~el~~ll~~y~~~ 158 (178)
T PRK06474 126 KATFSVVELKLD----EEEFEEFQSELNELMIKYYNS 158 (178)
T ss_pred ccceeeeeEecC----HHHHHHHHHHHHHHHHHHHhC
Confidence 456899999985 688999999999999999875
No 17
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=25.75 E-value=1.4e+02 Score=29.62 Aligned_cols=62 Identities=8% Similarity=0.098 Sum_probs=48.2
Q ss_pred cceeecCCCCchHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhhhHhHhHHHHHHHHhhhcc
Q psy16837 107 IPVSLNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAILMGA 169 (204)
Q Consensus 107 ~PFYL~gL~~T~diveaI~~VRaICdeyt~~GlpnyPsG~PF~FWEQYL~LR~~L~lAI~iia 169 (204)
|--|+.-.|+.....+++++++.|-+++.+..+.+....+.. =|...+.|+..|.+|.+|+.
T Consensus 475 m~~~~gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~n~-~~~~a~e~~~~l~~a~~i~~ 536 (657)
T PRK08626 475 MMEKVGIFRNGPELEKAVKELQELLERSKNIGLKSKKRGANP-ELEEALRVPRMLKLALCVAY 536 (657)
T ss_pred HhcccCEEecHHHHHHHHHHHHHHHHHHHHhcccCcccccCH-HHHHHHHHHhHHHHHHHHHH
Confidence 445666678888999999999999999988887765544443 46678899999998888764
No 18
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=24.57 E-value=1.6e+02 Score=28.65 Aligned_cols=57 Identities=7% Similarity=-0.031 Sum_probs=41.6
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhhhHhHhHHHHHHHHhhhcc
Q psy16837 112 NNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAILMGA 169 (204)
Q Consensus 112 ~gL~~T~diveaI~~VRaICdeyt~~GlpnyPsG~PF~FWEQYL~LR~~L~lAI~iia 169 (204)
--.|+...+.+++++++.|-+++.+..+.+....+. .-|...+.|+..|.+|-.++-
T Consensus 464 gi~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~~el~n~l~~a~~i~~ 520 (589)
T PRK08641 464 TVVRENDKLLETDEKIQELMERYKRISVNDTSRWSN-QGASFTRQLWNMLELARVITI 520 (589)
T ss_pred CEEECHHHHHHHHHHHHHHHHHHHhcCcCccccccc-HHHHHHHHHHHHHHHHHHHHH
Confidence 345778888899999999988888776655543221 357788899988888877663
No 19
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=24.14 E-value=80 Score=23.60 Aligned_cols=27 Identities=11% Similarity=0.198 Sum_probs=20.6
Q ss_pred cceeecCCCCchHHHHHHHHHHHHHHHHH
Q psy16837 107 IPVSLNNLYTTRDITELITQVRGICDEFE 135 (204)
Q Consensus 107 ~PFYL~gL~~T~diveaI~~VRaICdeyt 135 (204)
+-.|..|- |+.-.++|+.+|.+||++-
T Consensus 4 L~Lyv~g~--tp~S~~ai~nl~~i~e~~l 30 (72)
T cd02978 4 LRLYVAGR--TPKSERALQNLKRILEELL 30 (72)
T ss_pred EEEEECCC--CchHHHHHHHHHHHHHHhc
Confidence 44556553 5677899999999999985
No 20
>TIGR03475 tap_IncFII_lead RepA leader peptide Tap. This protein is a translated leader peptide that actis in the regulation of the expression of the plasmid replication protein RepA in incF2 group plasmids.
Probab=23.45 E-value=57 Score=20.53 Aligned_cols=13 Identities=8% Similarity=0.013 Sum_probs=10.8
Q ss_pred HhHhHHHHHHHHh
Q psy16837 153 QFSQFKMYFFLAI 165 (204)
Q Consensus 153 QYL~LR~~L~lAI 165 (204)
||+.|.++|++-+
T Consensus 6 Q~~FLc~~LL~cn 18 (26)
T TIGR03475 6 QYLFLCHLLLPCN 18 (26)
T ss_pred HHHHHHHHHhhhc
Confidence 8999999988654
No 21
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=22.01 E-value=1.3e+02 Score=20.66 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=22.4
Q ss_pred CCCCC----CcccchhhhhHhHhHHHHHHHHhhhc
Q psy16837 138 GLPNY----PSGIIFYFWQQFSQFKMYFFLAILMG 168 (204)
Q Consensus 138 Glpny----PsG~PF~FWEQYL~LR~~L~lAI~ii 168 (204)
|.... +..+.-.||+|+...-..++++.++|
T Consensus 34 G~N~l~~~~~~s~~~~~~~~f~~~~~~lL~~aail 68 (69)
T PF00690_consen 34 GPNELPEPKKKSLWRIFLKQFKNPFIILLLIAAIL 68 (69)
T ss_dssp SSSSTTTTTSSSHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred ccccccccccCcHHHHHHHHHHhHHHHHHHHHHHH
Confidence 66555 56667778888888777777777765
No 22
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=21.72 E-value=1.6e+02 Score=25.36 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhhhHhHhHHH
Q psy16837 118 RDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKM 159 (204)
Q Consensus 118 ~diveaI~~VRaICdeyt~~GlpnyPsG~PF~FWEQYL~LR~ 159 (204)
++.+|-.+.+|.|+|+++..|. .|-.+.+-+|||.-|.
T Consensus 125 ~EQ~eEe~l~~~I~d~~~~ag~----~~~~l~~~D~~L~~~~ 162 (167)
T COG1528 125 AEQVEEEKLFKTILDKLELAGN----DGEGLYLIDKELKNRA 162 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC----CccchhhhHHHHHhhc
Confidence 3556677788899999999887 8888999999998763
No 23
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=20.71 E-value=1.5e+02 Score=22.92 Aligned_cols=34 Identities=12% Similarity=0.240 Sum_probs=28.3
Q ss_pred ceeecCCCCchHHHHHHHHHHHHHHHHHhcCCCC
Q psy16837 108 PVSLNNLYTTRDITELITQVRGICDEFESKGLPN 141 (204)
Q Consensus 108 PFYL~gL~~T~diveaI~~VRaICdeyt~~Glpn 141 (204)
-+-+|......+..|..+.+..+|++|...++|-
T Consensus 101 ~lVvN~~~~~~~~~~~~~~~~~~~~r~~~~~l~~ 134 (139)
T cd02038 101 RVVVNRAESPKEGKKVFKRLSNVSNRFLGLSLDY 134 (139)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHHHhCCChhh
Confidence 3567777777888899999999999999888763
No 24
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=20.09 E-value=60 Score=21.86 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=18.4
Q ss_pred ceeecCCCCchHHHHHHHHHHHHHHHH
Q psy16837 108 PVSLNNLYTTRDITELITQVRGICDEF 134 (204)
Q Consensus 108 PFYL~gL~~T~diveaI~~VRaICdey 134 (204)
|.|--...+-+|+++.|++||.+..+|
T Consensus 3 Pvf~Pt~eEF~Dp~~yi~~i~~~~~~y 29 (42)
T smart00545 3 PVFYPTMEEFKDPLAYISKIRPQAEKY 29 (42)
T ss_pred CeEcCCHHHHHCHHHHHHHHHHHHhhC
Confidence 334444556678888888888876666
Done!