Query psy16837
Match_columns 204
No_of_seqs 61 out of 63
Neff 3.1
Searched_HMMs 29240
Date Fri Aug 16 23:18:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16837.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16837hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hw8_A Bacterial extracellular 71.8 0.79 2.7E-05 38.5 0.0 24 122-145 165-188 (420)
2 2e9x_B DNA replication complex 46.8 2.1 7.1E-05 35.4 -1.8 28 103-130 83-123 (185)
3 1urj_A Major DNA-binding prote 33.1 48 0.0016 34.5 5.2 48 105-156 850-897 (1136)
4 2kxh_B Peptide of FAR upstream 30.6 31 0.0011 21.6 2.1 20 117-136 7-26 (31)
5 2ftx_A Hypothetical 25.2 kDa p 29.6 8.7 0.0003 28.9 -0.6 10 149-158 8-17 (90)
6 1z9e_A PC4 and SFRS1 interacti 27.9 18 0.00063 28.7 1.0 38 114-156 46-97 (127)
7 4b6i_A SMA2266; signaling prot 24.0 77 0.0026 24.2 3.8 29 121-150 53-81 (102)
8 2diu_A KIAA0430 protein; struc 20.8 61 0.0021 24.3 2.6 26 109-134 12-37 (96)
9 4hfk_B Putative uncharacterize 20.5 89 0.003 24.1 3.5 29 121-150 52-80 (105)
10 1c0a_A Aspartyl tRNA synthetas 17.4 1.7E+02 0.0057 27.6 5.3 34 100-135 226-260 (585)
No 1
>4hw8_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MAL; 2.25A {Staphylococcus aureus subsp} PDB: 4hs7_A*
Probab=71.84 E-value=0.79 Score=38.51 Aligned_cols=24 Identities=8% Similarity=0.106 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcc
Q psy16837 122 ELITQVRGICDEFESKGLPNYPSG 145 (204)
Q Consensus 122 eaI~~VRaICdeyt~~GlpnyPsG 145 (204)
+..+++.++|+++++.|.-.|+.+
T Consensus 165 ~Twdel~~~~~~l~~~~~~~~g~~ 188 (420)
T 4hw8_A 165 QTLEEVEANAAKLTDSKKKQYGML 188 (420)
T ss_dssp CBHHHHHHHHHHHCBTTTTBEEEE
T ss_pred CCHHHHHHHHHHHhccCCceeEEE
Confidence 355666677777777665434433
No 2
>2e9x_B DNA replication complex GINS protein PSF2; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.2 d.344.1.2 PDB: 2eho_C* 2q9q_A*
Probab=46.82 E-value=2.1 Score=35.38 Aligned_cols=28 Identities=14% Similarity=0.387 Sum_probs=17.8
Q ss_pred eeeeccee-------------ecCCCCchHHHHHHHHHHHH
Q psy16837 103 IYAQIPVS-------------LNNLYTTRDITELITQVRGI 130 (204)
Q Consensus 103 ~yaQ~PFY-------------L~gL~~T~diveaI~~VRaI 130 (204)
.|+.+||+ -.++.+.+++-.+|++||.|
T Consensus 83 ~f~~lP~~~~~Eia~lLl~~a~dDi~~~~~ir~Li~DI~~v 123 (185)
T 2e9x_B 83 TFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKDMWDT 123 (185)
T ss_dssp SCCCCSSTTHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHH
Confidence 58888874 34666666666666666553
No 3
>1urj_A Major DNA-binding protein; SSB, ICP8, HSV-1, DNA replication, zinc-finger, nuclear protein.; 3.0A {Human herpesvirus 1} SCOP: e.58.1.1
Probab=33.06 E-value=48 Score=34.53 Aligned_cols=48 Identities=17% Similarity=0.265 Sum_probs=42.7
Q ss_pred eecceeecCCCCchHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhhhHhHh
Q psy16837 105 AQIPVSLNNLYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQ 156 (204)
Q Consensus 105 aQ~PFYL~gL~~T~diveaI~~VRaICdeyt~~GlpnyPsG~PF~FWEQYL~ 156 (204)
-|+| .++-+.+|| |+|+=|+..+++|++..+-+.+..-.-.+=|+|++
T Consensus 850 N~lp---~~~~~~e~~-~~i~fv~~~S~~Y~e~N~Idi~P~~l~~ya~~~l~ 897 (1136)
T 1urj_A 850 NQLP---ARLLSREDI-ETIAFIKKFSLDYGAINFINLAPNNVSELAMYYMA 897 (1136)
T ss_dssp TCSC---SSCSCTTHH-HHHHHHHHHHHHHHHHCCCCSCCCSHHHHHHHHHH
T ss_pred ccCc---cccCCHHHH-HHHHHHHHhhHHhhccCeeecCCchHHHHHHHHHH
Confidence 4566 677778888 99999999999999999999999999999999985
No 4
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=30.56 E-value=31 Score=21.62 Aligned_cols=20 Identities=10% Similarity=0.278 Sum_probs=17.3
Q ss_pred chHHHHHHHHHHHHHHHHHh
Q psy16837 117 TRDITELITQVRGICDEFES 136 (204)
Q Consensus 117 T~diveaI~~VRaICdeyt~ 136 (204)
.+.|.++|+.+|.|..++..
T Consensus 7 ~daFadA~~RaRQIaAKig~ 26 (31)
T 2kxh_B 7 NDAFKDALQRARQIAAKIGG 26 (31)
T ss_dssp SSHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcC
Confidence 67899999999999888743
No 5
>2ftx_A Hypothetical 25.2 kDa protein in AFG3-SEB2 intergenic region; alpha-beta, complex, coiled-coil, structural protein, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.300.1.1 PDB: 2fv4_A
Probab=29.57 E-value=8.7 Score=28.89 Aligned_cols=10 Identities=10% Similarity=0.481 Sum_probs=8.9
Q ss_pred hhhhHhHhHH
Q psy16837 149 YFWQQFSQFK 158 (204)
Q Consensus 149 ~FWEQYL~LR 158 (204)
.|||+||+||
T Consensus 8 ~~~e~~LGLr 17 (90)
T 2ftx_A 8 ALYERLLQLR 17 (90)
T ss_dssp HHHHHHHCEE
T ss_pred HHHHHHcCcE
Confidence 5899999987
No 6
>1z9e_A PC4 and SFRS1 interacting protein 2; heat repeat-like, ledgf, protein binding/transcription complex; NMR {Homo sapiens} SCOP: a.48.4.1
Probab=27.89 E-value=18 Score=28.68 Aligned_cols=38 Identities=11% Similarity=0.181 Sum_probs=19.5
Q ss_pred CCCchHHHHHHHHHHH-------------HHHHHHhc-CCCCCCcccchhhhhHhHh
Q psy16837 114 LYTTRDITELITQVRG-------------ICDEFESK-GLPNYPSGIIFYFWQQFSQ 156 (204)
Q Consensus 114 L~~T~diveaI~~VRa-------------ICdeyt~~-GlpnyPsG~PF~FWEQYL~ 156 (204)
|...+++|+.|+.+|. |.++|.+. .++ .| +-||+|++.
T Consensus 46 L~Rnpe~V~TlkklRrY~gnq~Ir~kA~~iY~kFK~lf~~g---eg--~~fw~~~~~ 97 (127)
T 1z9e_A 46 AQKHTEMITTLKKIRRFKVSQVIMEKSTMLYNKFKNMFLVG---EG--DSVITQVLN 97 (127)
T ss_dssp HGGGHHHHHHHHHHTTCTTCSSHHHHHHHHHHHHHHHHHC-----------------
T ss_pred HhhChHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhcC---CC--chHHHHHHH
Confidence 5668899999999975 67777663 333 24 578999875
No 7
>4b6i_A SMA2266; signaling protein; 1.95A {Serratia marcescens}
Probab=23.98 E-value=77 Score=24.18 Aligned_cols=29 Identities=7% Similarity=0.116 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcccchhh
Q psy16837 121 TELITQVRGICDEFESKGLPNYPSGIIFYF 150 (204)
Q Consensus 121 veaI~~VRaICdeyt~~GlpnyPsG~PF~F 150 (204)
+|+=++||++.++|-++...| |.|.+|.+
T Consensus 53 ~Ea~~~~~~Li~kyl~~~y~~-~~g~~~~l 81 (102)
T 4b6i_A 53 MDAFEQGEKLAEQYANKNSQG-SVQGTYHT 81 (102)
T ss_dssp HHHHHHHHHHHHHHHTTCCCC-SSSSCCHH
T ss_pred hhhhHHHHHHHHHHHHhccCC-CCCchhHH
Confidence 467789999999999987766 47898874
No 8
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.79 E-value=61 Score=24.27 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=22.2
Q ss_pred eeecCCCCchHHHHHHHHHHHHHHHH
Q psy16837 109 VSLNNLYTTRDITELITQVRGICDEF 134 (204)
Q Consensus 109 FYL~gL~~T~diveaI~~VRaICdey 134 (204)
+|+.||...-+.-++-+.++++.++|
T Consensus 12 lYV~NL~~~~~~~~lk~~L~~lF~~y 37 (96)
T 2diu_A 12 LYVYNLPANKDGKSVSNRLRRLSDNC 37 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHTT
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHc
Confidence 89999998888766667799999988
No 9
>4hfk_B Putative uncharacterized protein; amidase, hydrolase; 2.10A {Enterobacter cloacae}
Probab=20.53 E-value=89 Score=24.05 Aligned_cols=29 Identities=3% Similarity=-0.013 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcccchhh
Q psy16837 121 TELITQVRGICDEFESKGLPNYPSGIIFYF 150 (204)
Q Consensus 121 veaI~~VRaICdeyt~~GlpnyPsG~PF~F 150 (204)
+|+-.+||++.++|-++...| |++..|.|
T Consensus 52 ~Ea~~~~~~Li~kyLa~~y~~-~~~~~f~l 80 (105)
T 4hfk_B 52 AENFEKADEVIVSLLKQKVGG-TEPGHYQI 80 (105)
T ss_dssp HHHHHHHHHHHHHHHTSCCBC-SSSSCCHH
T ss_pred HHHhHHHHHHHHHHHccccCC-CCCCcchH
Confidence 455578999999999887765 67777765
No 10
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=17.39 E-value=1.7e+02 Score=27.58 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=27.2
Q ss_pred CCeeeeecceeecCCCCchHHHHHHHH-HHHHHHHHH
Q psy16837 100 APLIYAQIPVSLNNLYTTRDITELITQ-VRGICDEFE 135 (204)
Q Consensus 100 ~PL~yaQ~PFYL~gL~~T~diveaI~~-VRaICdeyt 135 (204)
+| ||+|+=+|..... -.|+.+++|+ |+.|+.+..
T Consensus 226 ~p-EFT~lE~e~af~d-~~dvm~~~E~li~~i~~~v~ 260 (585)
T 1c0a_A 226 QP-EFTQIDVETSFMT-APQVREVMEALVRHLWLEVK 260 (585)
T ss_dssp CS-EEEEEEEEEESCC-HHHHHHHHHHHHHHHHHHHH
T ss_pred Cc-ccceeeeeecCCC-HHHHHHHHHHHHHHHHHHHh
Confidence 47 9999999999985 7888888887 566766653
Done!