Query psy16837
Match_columns 204
No_of_seqs 61 out of 63
Neff 3.1
Searched_HMMs 13730
Date Fri Aug 16 23:19:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16837.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16837hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kf6a1 a.7.3.1 (A:443-576) Fu 50.4 20 0.0014 25.6 6.3 55 114-169 24-78 (134)
2 d1m0ga_ g.46.1.1 (A:) Metallot 41.6 2.8 0.0002 24.4 0.2 9 4-12 2-10 (30)
3 d1neka1 a.7.3.1 (A:451-588) Su 41.2 26 0.0019 25.0 5.6 55 114-169 24-78 (138)
4 d2e9xb1 a.278.1.2 (B:62-173) D 40.4 1.1 7.8E-05 32.4 -2.3 17 113-129 45-61 (112)
5 d1jmxa2 a.3.1.7 (A:86-162) Qui 35.9 3.7 0.00027 28.7 0.1 19 14-32 43-61 (77)
6 d1pbya2 a.3.1.7 (A:86-165) Qui 35.0 3.9 0.00028 28.8 0.1 21 14-34 43-63 (80)
7 d1o0pa_ d.58.7.1 (A:) Splicing 32.0 14 0.0011 24.6 2.7 35 101-136 6-40 (104)
8 d2bs2a1 a.7.3.1 (A:458-655) Fu 21.5 98 0.0072 23.7 6.3 55 114-169 24-78 (198)
9 d2z1ea1 d.79.4.1 (A:43-155) Hy 20.8 38 0.0028 23.2 3.3 42 93-135 42-83 (113)
10 d1ji9a_ g.46.1.1 (A:) Metallot 20.3 12 0.00085 22.5 0.3 9 4-12 3-11 (37)
No 1
>d1kf6a1 a.7.3.1 (A:443-576) Fumarate reductase {Escherichia coli [TaxId: 562]}
Probab=50.35 E-value=20 Score=25.59 Aligned_cols=55 Identities=11% Similarity=0.044 Sum_probs=41.9
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhhhHhHhHHHHHHHHhhhcc
Q psy16837 114 LYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAILMGA 169 (204)
Q Consensus 114 L~~T~diveaI~~VRaICdeyt~~GlpnyPsG~PF~FWEQYL~LR~~L~lAI~iia 169 (204)
.|+...+.++++++..|-+++.+..++.- +-.--.=|..++.|+.-|.+|-+|+.
T Consensus 24 ~R~~~~L~~al~~l~~l~~~~~~~~~~~~-~~~~n~~l~~~~el~n~l~~a~~i~~ 78 (134)
T d1kf6a1 24 YRTPELMQKTIDKLAELQERFKRVRITDT-SSVFNTDLLYTIELGHGLNVAECMAH 78 (134)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHTTBCCCCC-CCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHHHHHHhhhcccccc-ccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 56777888899999999999988787752 22222457778889999988887764
No 2
>d1m0ga_ g.46.1.1 (A:) Metallothionein {Black rockcod (Notothenia coriiceps) [TaxId: 8208]}
Probab=41.60 E-value=2.8 Score=24.44 Aligned_cols=9 Identities=56% Similarity=1.704 Sum_probs=7.1
Q ss_pred eeeeecCCC
Q psy16837 4 CCCCIPTGS 12 (204)
Q Consensus 4 ~~~~~~~~~ 12 (204)
||-|||+|-
T Consensus 2 cc~ccpsgc 10 (30)
T d1m0ga_ 2 CCPCCPSGC 10 (30)
T ss_dssp CCTTSCSCC
T ss_pred CCCcccccc
Confidence 677899883
No 3
>d1neka1 a.7.3.1 (A:451-588) Succinate dehydogenase {Escherichia coli [TaxId: 562]}
Probab=41.17 E-value=26 Score=25.00 Aligned_cols=55 Identities=9% Similarity=0.044 Sum_probs=43.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhhhHhHhHHHHHHHHhhhcc
Q psy16837 114 LYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAILMGA 169 (204)
Q Consensus 114 L~~T~diveaI~~VRaICdeyt~~GlpnyPsG~PF~FWEQYL~LR~~L~lAI~iia 169 (204)
.++.+.+.+++++++.|=+++.+.+++.....+..- |-..+.|+.-|.+|-+|+.
T Consensus 24 ~R~~~~L~~al~~l~~l~~~~~~~~~~~~~~~~n~~-l~~~~el~n~l~~a~~i~~ 78 (138)
T d1neka1 24 FREGDAMAKGLEQLKVIRERLKNARLDDTSSEFNTQ-RVECLELDNLMETAYATAV 78 (138)
T ss_dssp EECHHHHHHHHHHHHHHHHHGGGBCCCCCCSSCCHH-HHHHHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHHHHHhhceeeccccchhhhhh-HHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999999888887766655443 4446889999999888875
No 4
>d2e9xb1 a.278.1.2 (B:62-173) DNA replication complex GINS protein PSF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.42 E-value=1.1 Score=32.38 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=12.2
Q ss_pred CCCCchHHHHHHHHHHH
Q psy16837 113 NLYTTRDITELITQVRG 129 (204)
Q Consensus 113 gL~~T~diveaI~~VRa 129 (204)
++.+.+++..+||+||+
T Consensus 45 di~~~~~vr~Lv~DI~~ 61 (112)
T d2e9xb1 45 NIPKADEIRTLVKDMWD 61 (112)
T ss_dssp GSTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 66677777777777776
No 5
>d1jmxa2 a.3.1.7 (A:86-162) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Pseudomonas putida [TaxId: 303]}
Probab=35.87 E-value=3.7 Score=28.70 Aligned_cols=19 Identities=47% Similarity=0.940 Sum_probs=15.2
Q ss_pred CCCcchhhhhhhcccCcce
Q psy16837 14 GQWPCLEYKAANKRRSHPR 32 (204)
Q Consensus 14 ~~~~~~~~~~~~~~~~~LL 32 (204)
||||-+||.|-.+-|.-+-
T Consensus 43 Gq~PtlEyqA~~RDR~W~~ 61 (77)
T d1jmxa2 43 GQWPSLEYQAQARDRDWLP 61 (77)
T ss_dssp HHCGGGGGSTTTTTTTHHH
T ss_pred ccCchHHHHHhcccccHHH
Confidence 7999999999877776443
No 6
>d1pbya2 a.3.1.7 (A:86-165) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}
Probab=35.05 E-value=3.9 Score=28.76 Aligned_cols=21 Identities=38% Similarity=0.667 Sum_probs=16.6
Q ss_pred CCCcchhhhhhhcccCcceee
Q psy16837 14 GQWPCLEYKAANKRRSHPRLT 34 (204)
Q Consensus 14 ~~~~~~~~~~~~~~~~~LLvQ 34 (204)
||||-+||.|--+-|.-+-|.
T Consensus 43 GQ~PtlEyqA~~RDR~W~~iA 63 (80)
T d1pbya2 43 GQFPTLEYQALARDRDWWGIA 63 (80)
T ss_dssp HHCGGGGGSTTTTTTTHHHHH
T ss_pred ccCchHHHHHhccCccHHHHH
Confidence 799999999988777655443
No 7
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.02 E-value=14 Score=24.62 Aligned_cols=35 Identities=20% Similarity=0.400 Sum_probs=24.6
Q ss_pred CeeeeecceeecCCCCchHHHHHHHHHHHHHHHHHh
Q psy16837 101 PLIYAQIPVSLNNLYTTRDITELITQVRGICDEFES 136 (204)
Q Consensus 101 PL~yaQ~PFYL~gL~~T~diveaI~~VRaICdeyt~ 136 (204)
-|....| |....|.+..++-+..++||..|++|-.
T Consensus 6 vl~l~N~-~~~~~l~~~~~~~~i~edi~~e~~k~G~ 40 (104)
T d1o0pa_ 6 VLCLMNM-VLPEELLDDEEYEEIVEDVRDECSKYGL 40 (104)
T ss_dssp EEEEESS-CCTTTTTSHHHHHHHHHHHHHHHTTTSC
T ss_pred EEEEeCC-CCHHHcCCchhHHHHHHHHHHHhcccCc
Confidence 3444444 5556667677788889999999998854
No 8
>d2bs2a1 a.7.3.1 (A:458-655) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}
Probab=21.54 E-value=98 Score=23.67 Aligned_cols=55 Identities=7% Similarity=0.082 Sum_probs=41.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhhhHhHhHHHHHHHHhhhcc
Q psy16837 114 LYTTRDITELITQVRGICDEFESKGLPNYPSGIIFYFWQQFSQFKMYFFLAILMGA 169 (204)
Q Consensus 114 L~~T~diveaI~~VRaICdeyt~~GlpnyPsG~PF~FWEQYL~LR~~L~lAI~iia 169 (204)
.|+.+..-+++++++.|-+++.+..++.--. ...+=|...+.|+.-|.+|.+|+.
T Consensus 24 ~R~~~~L~~al~~L~~L~~~~~~i~v~d~s~-~~N~~l~ealEL~nml~vA~~i~~ 78 (198)
T d2bs2a1 24 FRDGPHLEKAVKELEELYKKSKNVGIKNKRL-HANPELEEAYRVPMMLKVALCVAK 78 (198)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHTTBCCSCCCS-SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHHHHHHHHhhccccccc-ccchhhHHHHHHhHHHHHHHHHHH
Confidence 5667788899999999999998877754321 122457778899999999888764
No 9
>d2z1ea1 d.79.4.1 (A:43-155) Hydrogenase expression/formation protein HypE {Thermococcus kodakaraensis [TaxId: 311400]}
Probab=20.85 E-value=38 Score=23.19 Aligned_cols=42 Identities=7% Similarity=0.155 Sum_probs=29.3
Q ss_pred ccccCCCCCeeeeecceeecCCCCchHHHHHHHHHHHHHHHHH
Q psy16837 93 ELKIPKSAPLIYAQIPVSLNNLYTTRDITELITQVRGICDEFE 135 (204)
Q Consensus 93 ~l~IP~A~PL~yaQ~PFYL~gL~~T~diveaI~~VRaICdeyt 135 (204)
|+.-=-++|+ +..+-+-|..=.+.+.+.++++.+++.|++|.
T Consensus 42 Di~amGa~P~-~~~~~l~lp~~~~~~~l~~i~~gi~~~~~~~~ 83 (113)
T d2z1ea1 42 DLAVMGAEPI-ALANSMIIGEGLDMEVLKRVLKSMDETAREVP 83 (113)
T ss_dssp HHHTTTCEEE-EEEEEEEEETTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcChHH-HHhhheccCCCccHHHHHHHHHHHHHHHHHcC
Confidence 4555666775 44455555433356788899999999999984
No 10
>d1ji9a_ g.46.1.1 (A:) Metallothionein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.28 E-value=12 Score=22.53 Aligned_cols=9 Identities=56% Similarity=1.789 Sum_probs=6.9
Q ss_pred eeeeecCCC
Q psy16837 4 CCCCIPTGS 12 (204)
Q Consensus 4 ~~~~~~~~~ 12 (204)
||-|||.|-
T Consensus 3 ccsccpagc 11 (37)
T d1ji9a_ 3 CCSCCPAGC 11 (37)
T ss_dssp CCSSSCTTC
T ss_pred ccccchhhH
Confidence 677888874
Done!