RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16837
         (204 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 44.7 bits (105), Expect = 1e-05
 Identities = 37/204 (18%), Positives = 55/204 (26%), Gaps = 71/204 (34%)

Query: 13  GGQ---WPCLE-----YKAANKRRSHP---RLTARHGDTPLPTIVSAQPPSGGAFYNY-- 59
           GGQ       E     Y+       H     L     +T L  ++          +    
Sbjct: 161 GGQGNTDDYFEELRDLYQ-----TYHVLVGDLIKFSAET-LSELIR-TTLDAEKVFTQGL 213

Query: 60  -LSAWSTNDALSYGASQCSLRPEPKPWLHVSNDYELKIPKSAPLI----YAQIPVSLNNL 114
            +  W  N             P   P      DY L IP S PLI     A   V+   L
Sbjct: 214 NILEWLEN-------------PSNTP----DKDYLLSIPISCPLIGVIQLAHYVVTAKLL 256

Query: 115 -YTTRDITE----LITQVRGI--------CDEFESKGLPNYPSGIIFYFW------QQFS 155
            +T  ++           +G+         D +ES    +    I   F+      + + 
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF-FVSVRKAITVLFFIGVRCYEAYP 315

Query: 156 QFKMYFFLAILM-------GAPGP 172
                   +IL        G P P
Sbjct: 316 N--TSLPPSILEDSLENNEGVPSP 337



 Score = 39.3 bits (91), Expect = 6e-04
 Identities = 29/181 (16%), Positives = 43/181 (23%), Gaps = 72/181 (39%)

Query: 71  YGASQCSLRPEPKPWLHVSNDYELKIPKSAPL---------IYA----QIPVS-----LN 112
             A   + RP  K               SA           + A    Q         L 
Sbjct: 127 ITARIMAKRPFDKK------------SNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR 174

Query: 113 NLYTT--RDITELITQVRGICDEF---ESKGLPNYPSGIIFYFWQQ-------------- 153
           +LY T    + +LI        E           +  G+    W +              
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI 234

Query: 154 -FS-------QFKMYFFLAILMG-APG---PSSSLPGGGASTCSSD-------SQSTTSS 194
             S       Q   Y   A L+G  PG           GA+  S         +++ +  
Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK----GATGHSQGLVTAVAIAETDSWE 290

Query: 195 S 195
           S
Sbjct: 291 S 291


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 29.1 bits (64), Expect = 0.56
 Identities = 8/18 (44%), Positives = 10/18 (55%), Gaps = 4/18 (22%)

Query: 94  LKI--PKSAP-L-IYAQI 107
           LK+    SAP L I A +
Sbjct: 29  LKLYADDSAPALAIKATM 46


>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA,
          transfer RNA, 23S ribosomal subunit, ribosome recycling
          factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
          1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0*
          2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0*
          2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
          Length = 56

 Score = 25.6 bits (57), Expect = 2.5
 Identities = 11/29 (37%), Positives = 12/29 (41%), Gaps = 7/29 (24%)

Query: 25 NKRRSHPRLTARHGDTPLPTIVSAQPPSG 53
            RRSH  LTA        T +S    SG
Sbjct: 13 GMRRSHDALTA-------VTSLSVDKTSG 34


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.5 bits (60), Expect = 4.4
 Identities = 25/152 (16%), Positives = 40/152 (26%), Gaps = 49/152 (32%)

Query: 19  LEYKAANKRRSHPRLTAR-------HGDTPLPTIVSAQPPSGGAFYNYLSAWSTNDALSY 71
           L+ K  N+   H  +            D  +P      P     FY++         + +
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIP------PYLDQYFYSH---------IGH 479

Query: 72  GASQCSLRPE----PKPWLHVSNDY---ELKIPKSAPLIYAQIPVSLNNL---------Y 115
                            +L    D+   E KI   +    A    S+ N          Y
Sbjct: 480 HLKNIEHPERMTLFRMVFL----DFRFLEQKIRHDSTAWNA--SGSILNTLQQLKFYKPY 533

Query: 116 TTRDITELITQVRGICDEFESKGLPNYPSGII 147
              +  +    V  I D F    LP     +I
Sbjct: 534 ICDNDPKYERLVNAILD-F----LPKIEENLI 560


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.134    0.431 

Gapped
Lambda     K      H
   0.267   0.0786    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,074,416
Number of extensions: 167331
Number of successful extensions: 383
Number of sequences better than 10.0: 1
Number of HSP's gapped: 383
Number of HSP's successfully gapped: 6
Length of query: 204
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 115
Effective length of database: 4,216,824
Effective search space: 484934760
Effective search space used: 484934760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.9 bits)