RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16837
         (204 letters)



>d1rlfa_ d.15.1.5 (A:) RalGDS-like factor, Rlf {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 90

 Score = 26.6 bits (59), Expect = 0.80
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 88  VSNDYELKIPKSAPLIYAQIPVSLN 112
           +  D EL IP SA + YA    S +
Sbjct: 59  LPGDRELTIPHSANVFYAMDGASHD 83


>d2gc4d1 a.3.1.1 (D:1-147) Cytochrome c551 {Paracoccus denitrificans
           [TaxId: 266]}
          Length = 147

 Score = 27.5 bits (60), Expect = 0.81
 Identities = 11/84 (13%), Positives = 21/84 (25%), Gaps = 6/84 (7%)

Query: 3   CCCCCIPTGSGGQWPCLEYKAANKRRSHPRLTARHGDTPLPTIVSAQPPSGGAFYNYLSA 62
           C  C      G   P L         +   +          T+        G  +  L+ 
Sbjct: 57  CSGCHGHYAEGKIGPGLNDAYWTYPGNETDVGLFS------TLYGGATGQMGPMWGSLTL 110

Query: 63  WSTNDALSYGASQCSLRPEPKPWL 86
                 +++     +  P+   WL
Sbjct: 111 DEMLRTMAWVRHLYTGDPKDASWL 134


>d2qapa1 c.1.10.1 (A:1-357) Fructose-1,6-bisphosphate aldolase
           {Trypanosome (Leishmania mexicana) [TaxId: 5665]}
          Length = 357

 Score = 26.9 bits (59), Expect = 1.7
 Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 3/40 (7%)

Query: 134 FESKGLPNYPSGIIFY---FWQQFSQFKMYFFLAILMGAP 170
            E++G   Y SG+I +     Q+ S  + +       G  
Sbjct: 73  LEAEGFEQYISGVILHDETVGQKASNGQTFPEYLTARGVV 112


>d1pbya2 a.3.1.7 (A:86-165) Quinohemoprotein amine dehydrogenase A
          chain, domains 1 and 2 {Paracoccus denitrificans
          [TaxId: 266]}
          Length = 80

 Score = 24.8 bits (54), Expect = 3.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 14 GQWPCLEYKAANKRR 28
          GQ+P LEY+A  + R
Sbjct: 43 GQFPTLEYQALARDR 57


>d1jmxa2 a.3.1.7 (A:86-162) Quinohemoprotein amine dehydrogenase A
          chain, domains 1 and 2 {Pseudomonas putida [TaxId:
          303]}
          Length = 77

 Score = 24.4 bits (53), Expect = 3.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 14 GQWPCLEYKAANKRR 28
          GQWP LEY+A  + R
Sbjct: 43 GQWPSLEYQAQARDR 57


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.431 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 784,674
Number of extensions: 34228
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 6
Length of query: 204
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,295,466
Effective search space: 159342318
Effective search space used: 159342318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.8 bits)