Query psy16846
Match_columns 253
No_of_seqs 51 out of 53
Neff 2.1
Searched_HMMs 46136
Date Fri Aug 16 23:33:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16846.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16846hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08926 DUF1908: Domain of un 99.8 8E-23 1.7E-27 184.8 0.0 60 187-252 1-63 (282)
2 PF06832 BiPBP_C: Penicillin-B 69.7 5.9 0.00013 29.1 3.1 32 68-99 44-84 (89)
3 cd00736 bacteriophage_lambda_l 33.5 19 0.00042 30.9 0.9 14 221-236 122-135 (151)
4 PF08115 Toxin_28: SFI toxin f 22.7 33 0.00071 23.8 0.3 11 25-35 25-35 (35)
5 KOG2265|consensus 16.3 68 0.0015 28.8 0.9 64 33-99 23-89 (179)
6 cd05875 Ig6_hNeurofascin_like 14.5 2E+02 0.0044 20.3 2.9 26 68-93 14-44 (77)
7 PF00722 Glyco_hydro_16: Glyco 14.4 1.4E+02 0.003 23.7 2.2 29 53-81 116-144 (185)
8 KOG1324|consensus 14.2 86 0.0019 28.4 1.0 17 76-92 41-57 (190)
9 cd05757 Ig2_IL1R_like Second i 14.2 1.7E+02 0.0038 21.8 2.5 27 68-94 31-58 (92)
10 PRK11240 penicillin-binding pr 14.1 2.7E+02 0.0058 29.1 4.6 32 68-99 726-764 (772)
No 1
>PF08926 DUF1908: Domain of unknown function (DUF1908); InterPro: IPR015022 This domain is found in microtubule-associated serine/threonine-protein kinases. ; GO: 0000287 magnesium ion binding, 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1V9V_A.
Probab=99.85 E-value=8e-23 Score=184.84 Aligned_cols=60 Identities=53% Similarity=0.736 Sum_probs=0.0
Q ss_pred CCCCCCCCC---CCCCCCCCCCCCCCCCCcccCCCCcccceecccCCCCCCCCCCCCcccccccccccc
Q psy16846 187 PLESPRVAS---NQHFPFIPMKRPFNHLNTDCRSDGTRRWSVASLPSSGYGTTPGSSNVSSIFEIGEFK 252 (253)
Q Consensus 187 PldSPRn~s---~~hFpF~p~kR~~r~~~~~~~~DgtRRWSvASLPSSGYGT~~pSS~vSSscSSQEr~ 252 (253)
|+||||||+ ++||+|++..+ .....+|| ||||||||||||||||||||++||+|||||++
T Consensus 1 p~dsprn~~~~~~~~f~f~~~~~-----~~~~~~D~-RRWSlASLPSSGYgT~~~sS~vSSscSSQE~L 63 (282)
T PF08926_consen 1 PLDSPRNFSPNSPAHFSFASSHV-----PRSDRADG-RRWSLASLPSSGYGTNTPSSTVSSSCSSQERL 63 (282)
T ss_dssp ---------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCccCcccccccc-----ccccccCC-CccccccCCCCCCCcCCCCCeeecchhhHHHh
Confidence 899999998 48999976322 11235899 99999999999999999999999999999997
No 2
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=69.69 E-value=5.9 Score=29.11 Aligned_cols=32 Identities=28% Similarity=0.541 Sum_probs=21.1
Q ss_pred EEEEeeccccc--ceeceeEe-------eceeeeecCCCcc
Q psy16846 68 VVEWYLDGSVE--SKVNRVIM-------DKKLWVEDDGGRR 99 (253)
Q Consensus 68 ~~~~~~~~~~~--~~~~~~~~-------~~~~~~~~~~~~~ 99 (253)
-+.|||||..- .+..+-+. .-.|.|.|+.||.
T Consensus 44 ~~~W~vdg~~~g~~~~~~~~~~~~~~~G~h~l~vvD~~G~~ 84 (89)
T PF06832_consen 44 PVYWFVDGEPLGTTQPGHQLFWQPDRPGEHTLTVVDAQGRS 84 (89)
T ss_pred cEEEEECCEEcccCCCCCeEEeCCCCCeeEEEEEEcCCCCE
Confidence 57999999876 33333221 2357888888875
No 3
>cd00736 bacteriophage_lambda_lysozyme The lysozyme from bacteriophage lambda hydrolyses the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc), as do other lysozymes. But unlike other lysozymes, bacteriophage lambda does not produce a reducing end upon cleavage of the peptidoglycan but rather uses the 6-OH of the same MurNAc residue to produce a 1,6-anhydromuramic acid terminal residue and is therefore a lytic transglycosylase. An identical 1,6-anhydro bond is formed in bacterial peptidoglycans by the action of the lytic transglycosylases of E. coli. However, they differ structurally.
Probab=33.54 E-value=19 Score=30.86 Aligned_cols=14 Identities=57% Similarity=1.206 Sum_probs=12.0
Q ss_pred ccceecccCCCCCCCC
Q psy16846 221 RRWSVASLPSSGYGTT 236 (253)
Q Consensus 221 RRWSvASLPSSGYGT~ 236 (253)
+-| ||||.+|||-.
T Consensus 122 ~~W--ASLPg~gYGQ~ 135 (151)
T cd00736 122 NIW--ASLPGAGYGQE 135 (151)
T ss_pred hhc--cCCCCcCCCCC
Confidence 578 89999999974
No 4
>PF08115 Toxin_28: SFI toxin family; InterPro: IPR012633 This family consists of the SFI family of spider toxins. This family of toxins might share structural, evolutionary and functional relationships with other small, highly structurally constrained spider neurotoxins. These toxins are highly selective agonists/antagonists of different voltage-dependent calcium channels and are extremely valuable reagents in the analysis of neuromuscular function.; GO: 0009405 pathogenesis, 0005576 extracellular region
Probab=22.69 E-value=33 Score=23.78 Aligned_cols=11 Identities=45% Similarity=0.960 Sum_probs=9.4
Q ss_pred ccCCcccchhh
Q psy16846 25 YKKPIRAPWEM 35 (253)
Q Consensus 25 ~~~~~~~~~~~ 35 (253)
-+.|+..||||
T Consensus 25 ~~~~~A~PWEm 35 (35)
T PF08115_consen 25 SNGPHARPWEM 35 (35)
T ss_pred cCCccCCcccC
Confidence 36799999998
No 5
>KOG2265|consensus
Probab=16.31 E-value=68 Score=28.76 Aligned_cols=64 Identities=23% Similarity=0.473 Sum_probs=40.5
Q ss_pred hhhhhhhhhhcccccCCC---CcccccccccceeeeEEEEEEeecccccceeceeEeeceeeeecCCCcc
Q psy16846 33 WEMVLEVFFLTEPLAKGD---STLNTPVHNRSLKLSLSVVEWYLDGSVESKVNRVIMDKKLWVEDDGGRR 99 (253)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (253)
|.--|+-.++.-|+.+|. ..+..-++.+.+++++---.-||||.... +|..|.-.|+.+|+-.-
T Consensus 23 W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~kg~~~ildG~L~~---~vk~des~WtiEd~k~i 89 (179)
T KOG2265|consen 23 WDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLKGQPPILDGELSH---SVKVDESTWTIEDGKMI 89 (179)
T ss_pred eeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecCCCCceecCcccc---ccccccceEEecCCEEE
Confidence 555566666667888877 22333344455555554445699998864 55678888988776543
No 6
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=14.51 E-value=2e+02 Score=20.26 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=14.7
Q ss_pred EEEEeecccc--cceeceeEe---eceeeee
Q psy16846 68 VVEWYLDGSV--ESKVNRVIM---DKKLWVE 93 (253)
Q Consensus 68 ~~~~~~~~~~--~~~~~~~~~---~~~~~~~ 93 (253)
.|.||-||.. ..+-.+++| +..|.+.
T Consensus 14 ~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~ 44 (77)
T cd05875 14 TFQWTRNGKFFNVAKDPRVSMRRRSGTLVID 44 (77)
T ss_pred EEEEEECCEEccCcCCCcEEEeCCCceEEEe
Confidence 5899999963 123344544 2345544
No 7
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=14.37 E-value=1.4e+02 Score=23.73 Aligned_cols=29 Identities=21% Similarity=0.439 Sum_probs=20.6
Q ss_pred ccccccccceeeeEEEEEEeeccccccee
Q psy16846 53 LNTPVHNRSLKLSLSVVEWYLDGSVESKV 81 (253)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (253)
..+-.|.-.+.-.-.-++||+||.+-..+
T Consensus 116 ~~~~~h~y~~~W~~~~i~fyiDg~~~~~~ 144 (185)
T PF00722_consen 116 PSTDFHTYGFEWTPDRIRFYIDGKLVRTV 144 (185)
T ss_dssp TTTSEEEEEEEEETTEEEEEETTEEEEEE
T ss_pred cCCCcEEEEEEEecCeEEEEECCEEEEEE
Confidence 34556777777777789999999655444
No 8
>KOG1324|consensus
Probab=14.21 E-value=86 Score=28.41 Aligned_cols=17 Identities=53% Similarity=0.675 Sum_probs=15.6
Q ss_pred cccceeceeEeeceeee
Q psy16846 76 SVESKVNRVIMDKKLWV 92 (253)
Q Consensus 76 ~~~~~~~~~~~~~~~~~ 92 (253)
+..+|-|.|||.+|-|-
T Consensus 41 sd~~k~NaViMGRKtwe 57 (190)
T KOG1324|consen 41 SDPSKKNAVIMGRKTWE 57 (190)
T ss_pred CCcccceeEEecccccc
Confidence 77899999999999994
No 9
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=14.17 E-value=1.7e+02 Score=21.81 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=15.4
Q ss_pred EEEEeecccccceeceeE-eeceeeeec
Q psy16846 68 VVEWYLDGSVESKVNRVI-MDKKLWVED 94 (253)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 94 (253)
-|.||-||.--..-++.+ ....||+.+
T Consensus 31 ~i~Wyk~~~~i~~~~~~~~~~~~L~I~~ 58 (92)
T cd05757 31 PVQWYKDCKLLEGDRKRFVKGSKLLIQN 58 (92)
T ss_pred cEEEeECCEECCCCccEEecCCEEEEee
Confidence 478999996433323333 445566543
No 10
>PRK11240 penicillin-binding protein 1C; Provisional
Probab=14.06 E-value=2.7e+02 Score=29.09 Aligned_cols=32 Identities=28% Similarity=0.509 Sum_probs=19.5
Q ss_pred EEEEeecccccceece-eEee------ceeeeecCCCcc
Q psy16846 68 VVEWYLDGSVESKVNR-VIMD------KKLWVEDDGGRR 99 (253)
Q Consensus 68 ~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~ 99 (253)
.+.|||||..-.+-+. .... -+|=|.||.|+.
T Consensus 726 ~~~W~~d~~~~~~~~~~~~~~~~~~G~~~l~v~d~~G~~ 764 (772)
T PRK11240 726 RRWWFLNGEPLTERGRNVTLHLTDPGRYQLLVMDESGQI 764 (772)
T ss_pred eEEEEECCEEccCCCcceeeccCCCccEEEEEECCCCCE
Confidence 4899999987653311 1111 246677887764
Done!