Query psy16846
Match_columns 253
No_of_seqs 51 out of 53
Neff 2.1
Searched_HMMs 29240
Date Fri Aug 16 23:33:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16846.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16846hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am7_A Lysozyme; glycosidase, 21.5 29 0.00098 28.6 1.0 13 221-235 122-134 (158)
2 2nvm_A FDXN element excision c 11.5 89 0.0031 25.4 1.5 13 85-97 78-90 (126)
3 2lu7_A Obscurin-like protein 1 11.2 1.2E+02 0.004 20.5 1.8 9 69-77 27-35 (84)
4 2nwv_A XISI protein-like; YP_3 10.9 81 0.0028 25.0 1.0 13 85-97 66-78 (114)
5 2nlv_A XISI protein-like; XISI 10.7 83 0.0028 24.9 1.0 13 85-97 64-76 (112)
6 3d7q_A XISI protein-like; stru 10.7 83 0.0028 24.9 1.0 13 85-97 64-76 (112)
7 2e6q_A Obscurin-like protein 1 10.3 1.8E+02 0.0063 21.1 2.7 11 68-78 37-47 (112)
8 2yuv_A Myosin-binding protein 9.3 2.7E+02 0.0094 18.1 3.1 10 68-77 38-47 (100)
9 2d9o_A DNAJ (HSP40) homolog, s 9.2 2.4E+02 0.0083 20.3 3.0 33 9-41 3-39 (100)
10 2yuz_A Myosin-binding protein 8.7 2.4E+02 0.0081 19.1 2.7 11 68-78 36-46 (100)
No 1
>1am7_A Lysozyme; glycosidase, transglycosylase, evolution; HET: TRN; 2.30A {Enterobacteria phage lambda} SCOP: d.2.1.4 PDB: 1d9u_A* 3d3d_A*
Probab=21.54 E-value=29 Score=28.64 Aligned_cols=13 Identities=54% Similarity=0.882 Sum_probs=11.1
Q ss_pred ccceecccCCCCCCC
Q psy16846 221 RRWSVASLPSSGYGT 235 (253)
Q Consensus 221 RRWSvASLPSSGYGT 235 (253)
..| ||||-+|||-
T Consensus 122 ~~W--ASLP~~gYGq 134 (158)
T 1am7_A 122 NIX--ASLPGAGYGQ 134 (158)
T ss_dssp TTC--TTSCCTTSTT
T ss_pred ccc--ccCCCCCCCC
Confidence 568 7999999985
No 2
>2nvm_A FDXN element excision controlling factor XISI; YP_321976.1, structural genomics, PSI-2, protein structure initiative; 2.19A {Anabaena variabilis atcc 29413} SCOP: d.326.1.1
Probab=11.53 E-value=89 Score=25.40 Aligned_cols=13 Identities=38% Similarity=0.966 Sum_probs=10.9
Q ss_pred EeeceeeeecCCC
Q psy16846 85 IMDKKLWVEDDGG 97 (253)
Q Consensus 85 ~~~~~~~~~~~~~ 97 (253)
|.|.|+|++.|+-
T Consensus 78 IkdgKIWIq~D~T 90 (126)
T 2nvm_A 78 IQNGKIWIEEDST 90 (126)
T ss_dssp EETTEEEEEECSS
T ss_pred EeCCeEEEEeCCc
Confidence 5699999998874
No 3
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=11.22 E-value=1.2e+02 Score=20.45 Aligned_cols=9 Identities=56% Similarity=1.228 Sum_probs=7.2
Q ss_pred EEEeecccc
Q psy16846 69 VEWYLDGSV 77 (253)
Q Consensus 69 ~~~~~~~~~ 77 (253)
|.||-||..
T Consensus 27 v~W~k~g~~ 35 (84)
T 2lu7_A 27 VRWYKDGER 35 (84)
T ss_dssp CEEEETTEE
T ss_pred EEEEECCEE
Confidence 689999864
No 4
>2nwv_A XISI protein-like; YP_323822.1, structural genomics, PSI-2, structure initiative, joint center for structural genomics; 1.85A {Anabaena variabilis} SCOP: d.326.1.1
Probab=10.89 E-value=81 Score=25.04 Aligned_cols=13 Identities=31% Similarity=0.644 Sum_probs=10.8
Q ss_pred EeeceeeeecCCC
Q psy16846 85 IMDKKLWVEDDGG 97 (253)
Q Consensus 85 ~~~~~~~~~~~~~ 97 (253)
|.|.|+|++.|+-
T Consensus 66 Ikd~KIWIq~d~T 78 (114)
T 2nwv_A 66 IKNEKIYIEEDYT 78 (114)
T ss_dssp EETTEEEEEEECC
T ss_pred EECCeEEEEeCCc
Confidence 5699999998864
No 5
>2nlv_A XISI protein-like; XISI-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.30A {Anabaena variabilis} SCOP: d.326.1.1
Probab=10.74 E-value=83 Score=24.87 Aligned_cols=13 Identities=31% Similarity=0.705 Sum_probs=10.9
Q ss_pred EeeceeeeecCCC
Q psy16846 85 IMDKKLWVEDDGG 97 (253)
Q Consensus 85 ~~~~~~~~~~~~~ 97 (253)
|.|.|+|++-|+-
T Consensus 64 Ikd~KIWIq~d~T 76 (112)
T 2nlv_A 64 IKDGKIWLQQNLT 76 (112)
T ss_dssp EETTEEEEEEECS
T ss_pred EECCeEEEEeCCc
Confidence 5699999998864
No 6
>3d7q_A XISI protein-like; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.30A {Nostoc punctiforme pcc 73102}
Probab=10.73 E-value=83 Score=24.87 Aligned_cols=13 Identities=23% Similarity=0.808 Sum_probs=10.9
Q ss_pred EeeceeeeecCCC
Q psy16846 85 IMDKKLWVEDDGG 97 (253)
Q Consensus 85 ~~~~~~~~~~~~~ 97 (253)
|.|.|+|++-|+-
T Consensus 64 Ikd~KIWIq~d~T 76 (112)
T 3d7q_A 64 IKNNKIWIQQNTT 76 (112)
T ss_dssp EETTEEEEEEECS
T ss_pred EECCeEEEEeCCc
Confidence 5699999998864
No 7
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=10.30 E-value=1.8e+02 Score=21.14 Aligned_cols=11 Identities=27% Similarity=0.688 Sum_probs=8.2
Q ss_pred EEEEeeccccc
Q psy16846 68 VVEWYLDGSVE 78 (253)
Q Consensus 68 ~~~~~~~~~~~ 78 (253)
-|.||.||..-
T Consensus 37 ~v~W~knG~~l 47 (112)
T 2e6q_A 37 QGTWFLNGEEL 47 (112)
T ss_dssp CCEEEESSCBC
T ss_pred eEEEEECCEEC
Confidence 37899999643
No 8
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Probab=9.26 E-value=2.7e+02 Score=18.05 Aligned_cols=10 Identities=40% Similarity=0.989 Sum_probs=7.8
Q ss_pred EEEEeecccc
Q psy16846 68 VVEWYLDGSV 77 (253)
Q Consensus 68 ~~~~~~~~~~ 77 (253)
.|.||.||..
T Consensus 38 ~v~W~k~g~~ 47 (100)
T 2yuv_A 38 EVKWYKNGQE 47 (100)
T ss_dssp CEEEEESSCB
T ss_pred eEEEEECCEE
Confidence 4789999864
No 9
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=9.22 E-value=2.4e+02 Score=20.32 Aligned_cols=33 Identities=27% Similarity=0.330 Sum_probs=21.7
Q ss_pred CCCccceeeEEEEeecccCC----cccchhhhhhhhh
Q psy16846 9 SHSSASVTSVLEISWSYKKP----IRAPWEMVLEVFF 41 (253)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 41 (253)
|.+..+..-.|-|.|..++. -..-.+.+.++|-
T Consensus 3 ~~~~~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~ 39 (100)
T 2d9o_A 3 SGSSGQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQ 39 (100)
T ss_dssp CCCCCCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHH
T ss_pred CCcCCCccceEEEeeeccCccCcCCCCCHHHHHHHHH
Confidence 33445557789999988764 3455677666663
No 10
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=8.70 E-value=2.4e+02 Score=19.06 Aligned_cols=11 Identities=18% Similarity=0.284 Sum_probs=8.2
Q ss_pred EEEEeeccccc
Q psy16846 68 VVEWYLDGSVE 78 (253)
Q Consensus 68 ~~~~~~~~~~~ 78 (253)
.|.||.||..-
T Consensus 36 ~v~W~k~g~~l 46 (100)
T 2yuz_A 36 PGKWTKNGLPV 46 (100)
T ss_dssp CEEEEETTEEC
T ss_pred eEEEEECCEEC
Confidence 37899999643
Done!