Query psy16846
Match_columns 253
No_of_seqs 51 out of 53
Neff 2.1
Searched_HMMs 13730
Date Fri Aug 16 23:34:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16846.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16846hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1am7a_ d.2.1.4 (A:) Lambda ly 14.1 26 0.0019 26.7 1.0 13 221-235 122-134 (154)
2 d1gl4b_ b.1.1.4 (B:) Perlecan 13.9 67 0.0048 19.5 2.9 22 67-88 33-54 (89)
3 d2nwva1 d.326.1.1 (A:2-113) Hy 13.5 28 0.002 25.8 1.0 13 85-97 64-76 (112)
4 d2nlva1 d.326.1.1 (A:1-111) Hy 13.4 29 0.0021 25.7 1.0 13 85-97 63-75 (111)
5 d2nvma1 d.326.1.1 (A:2-118) Xi 12.5 38 0.0027 25.2 1.5 13 85-97 76-88 (117)
6 d2h85a2 d.294.1.2 (A:191-345) 9.7 96 0.007 24.1 3.1 52 44-95 76-146 (155)
7 d1dypa_ b.29.1.2 (A:) kappa-Ca 9.4 70 0.0051 23.5 2.1 26 55-80 190-215 (271)
8 d1cs6a4 b.1.1.4 (A:300-388) Ax 9.4 77 0.0056 19.8 2.0 11 68-78 32-42 (89)
9 d1biha4 b.1.1.4 (A:307-395) He 9.4 78 0.0057 19.7 2.1 10 68-77 34-43 (89)
10 d1upsa1 b.29.1.2 (A:19-284) Gl 9.3 1.1E+02 0.0077 22.6 3.1 29 55-83 194-222 (266)
No 1
>d1am7a_ d.2.1.4 (A:) Lambda lysozyme {Bacteriophage lambda [TaxId: 10710]}
Probab=14.14 E-value=26 Score=26.70 Aligned_cols=13 Identities=62% Similarity=1.301 Sum_probs=11.2
Q ss_pred ccceecccCCCCCCC
Q psy16846 221 RRWSVASLPSSGYGT 235 (253)
Q Consensus 221 RRWSvASLPSSGYGT 235 (253)
+-| ||||-+|||-
T Consensus 122 ~eW--ASlP~~~ygQ 134 (154)
T d1am7a_ 122 NIW--ASLPGAGYGQ 134 (154)
T ss_dssp TTC--TTSCCTTSTT
T ss_pred Hhc--cCCCCCcCCC
Confidence 567 8999999986
No 2
>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.91 E-value=67 Score=19.54 Aligned_cols=22 Identities=5% Similarity=-0.028 Sum_probs=13.1
Q ss_pred EEEEEeecccccceeceeEeec
Q psy16846 67 SVVEWYLDGSVESKVNRVIMDK 88 (253)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~ 88 (253)
-.|+||.+|.....-+.+..+.
T Consensus 33 ~~v~W~k~~~~~~~~~~~~~~~ 54 (89)
T d1gl4b_ 33 YTLVWTRLHNGKLPSRAMDFNG 54 (89)
T ss_dssp CEEEEEEGGGBCCCTTEEEETT
T ss_pred CEEEEecCCceeeccccEeece
Confidence 3579999887654444333333
No 3
>d2nwva1 d.326.1.1 (A:2-113) Hypothetical protein Ava3320 {Anabaena variabilis [TaxId: 1172]}
Probab=13.54 E-value=28 Score=25.77 Aligned_cols=13 Identities=31% Similarity=0.644 Sum_probs=11.0
Q ss_pred EeeceeeeecCCC
Q psy16846 85 IMDKKLWVEDDGG 97 (253)
Q Consensus 85 ~~~~~~~~~~~~~ 97 (253)
|.|.|+|++.|+-
T Consensus 64 I~d~KIWIq~D~T 76 (112)
T d2nwva1 64 IKNEKIYIEEDYT 76 (112)
T ss_dssp EETTEEEEEEECC
T ss_pred EeCCeEEEEeCCc
Confidence 6799999998864
No 4
>d2nlva1 d.326.1.1 (A:1-111) Hypothetical protein Ava3825 {Anabaena variabilis [TaxId: 1172]}
Probab=13.39 E-value=29 Score=25.74 Aligned_cols=13 Identities=31% Similarity=0.705 Sum_probs=11.0
Q ss_pred EeeceeeeecCCC
Q psy16846 85 IMDKKLWVEDDGG 97 (253)
Q Consensus 85 ~~~~~~~~~~~~~ 97 (253)
|.|.|+|++.|+-
T Consensus 63 I~d~KIWIq~D~T 75 (111)
T d2nlva1 63 IKDGKIWLQQNLT 75 (111)
T ss_dssp EETTEEEEEEECS
T ss_pred EeCCeEEEEeCCc
Confidence 6799999998874
No 5
>d2nvma1 d.326.1.1 (A:2-118) XisI {Anabaena variabilis [TaxId: 1172]}
Probab=12.52 E-value=38 Score=25.21 Aligned_cols=13 Identities=38% Similarity=0.966 Sum_probs=11.1
Q ss_pred EeeceeeeecCCC
Q psy16846 85 IMDKKLWVEDDGG 97 (253)
Q Consensus 85 ~~~~~~~~~~~~~ 97 (253)
|.|.|+|++-|+-
T Consensus 76 Ikd~KIWIq~D~T 88 (117)
T d2nvma1 76 IQNGKIWIEEDST 88 (117)
T ss_dssp EETTEEEEEECSS
T ss_pred EeCCeEEEEeCCc
Confidence 6799999998874
No 6
>d2h85a2 d.294.1.2 (A:191-345) Nsp15, C-terminal domain {SARS coronavirus [TaxId: 227859]}
Probab=9.66 E-value=96 Score=24.09 Aligned_cols=52 Identities=38% Similarity=0.447 Sum_probs=39.4
Q ss_pred ccccCCCCccc----ccccccceeeeEEEEEEeec----------ccccceeceeEeece-----eeeecC
Q psy16846 44 EPLAKGDSTLN----TPVHNRSLKLSLSVVEWYLD----------GSVESKVNRVIMDKK-----LWVEDD 95 (253)
Q Consensus 44 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~-----~~~~~~ 95 (253)
++.-.-|+++. |-.++.+-|---+|+.-||| -+|-|||-.|++|-| ||..|.
T Consensus 76 ~~~~~~ds~v~~~~~t~~~~~ssK~vCTv~DvlLdDfv~ilK~~~~~vvSKV~~V~ID~k~~~fMlW~~d~ 146 (155)
T d2h85a2 76 EDFIPMDSTVKNYFITDAQTGSSKCGCSVIDLLLGDFVEIIKSQDLSVISKVVKVTIDYAEISFMLWCKDG 146 (155)
T ss_dssp EESSCSCCSSEEEEEEETTTCCEEEEEEEBCCCHHHHHHHHHTSCCSSSEEEEEEEETTEEEEEEEEEETT
T ss_pred ccccCcccceEEEEEEECCCCceeeeeEEEEEehHHHHHHHHhcCCCceeEEEEEEecceeEEEEEEecCC
Confidence 33445577753 45577889999999998875 677899999999987 676664
No 7
>d1dypa_ b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseudoalteromonas carrageenovora [TaxId: 227]}
Probab=9.43 E-value=70 Score=23.48 Aligned_cols=26 Identities=19% Similarity=0.625 Sum_probs=17.9
Q ss_pred ccccccceeeeEEEEEEeecccccce
Q psy16846 55 TPVHNRSLKLSLSVVEWYLDGSVESK 80 (253)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (253)
+-.|.-.+.-.-.-+.||+||.+-..
T Consensus 190 ~~fH~Y~v~W~~~~i~fyvDg~~v~~ 215 (271)
T d1dypa_ 190 NDFHTYGVNVTKDKITWYVDGEIVGE 215 (271)
T ss_dssp SSCEEEEEEECSSEEEEEETTEEEEE
T ss_pred CCcEEEEEEEeCCEEEEEEcCeEEEe
Confidence 33566666666677899999976433
No 8
>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=9.43 E-value=77 Score=19.84 Aligned_cols=11 Identities=36% Similarity=0.691 Sum_probs=8.2
Q ss_pred EEEEeeccccc
Q psy16846 68 VVEWYLDGSVE 78 (253)
Q Consensus 68 ~~~~~~~~~~~ 78 (253)
-|.||.||..-
T Consensus 32 ~v~W~k~g~~i 42 (89)
T d1cs6a4 32 AVRWLRDGQPL 42 (89)
T ss_dssp EEEEEETTEEC
T ss_pred EEEEEEeeccc
Confidence 47899998643
No 9
>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}
Probab=9.41 E-value=78 Score=19.74 Aligned_cols=10 Identities=20% Similarity=0.358 Sum_probs=7.5
Q ss_pred EEEEeecccc
Q psy16846 68 VVEWYLDGSV 77 (253)
Q Consensus 68 ~~~~~~~~~~ 77 (253)
.|.||.||..
T Consensus 34 ~v~W~~~~~~ 43 (89)
T d1biha4 34 NVVWSHNAKP 43 (89)
T ss_dssp CCEEEETTEE
T ss_pred EEEEEeCCcc
Confidence 3689998854
No 10
>d1upsa1 b.29.1.2 (A:19-284) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, catalytic domain {Clostridium perfringens [TaxId: 1502]}
Probab=9.33 E-value=1.1e+02 Score=22.59 Aligned_cols=29 Identities=10% Similarity=0.268 Sum_probs=19.5
Q ss_pred ccccccceeeeEEEEEEeecccccceece
Q psy16846 55 TPVHNRSLKLSLSVVEWYLDGSVESKVNR 83 (253)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (253)
+-.|.-.+.-.-.-+.||+||.+-..+++
T Consensus 194 ~~fHtY~~~W~p~~i~~yvDG~~~~t~~~ 222 (266)
T d1upsa1 194 SEYHIYAMEWTPTALKFYYDNELFKVIYG 222 (266)
T ss_dssp TSCEEEEEEECSSEEEEEETTEEEEEEEC
T ss_pred cccEEEEEEEcCCeEEEEECCEEEEEEcC
Confidence 34566666666677899999976554444
Done!