RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16846
         (253 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 31.1 bits (69), Expect = 0.19
 Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 11/35 (31%)

Query: 108 KKSKMKELDKNNEGSISNLVLMRKSNLGQSAPSLS 142
           +K  +K+L    + S+       K     SAP+L+
Sbjct: 18  EKQALKKL----QASL-------KLYADDSAPALA 41


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 32.1 bits (72), Expect = 0.19
 Identities = 25/184 (13%), Positives = 58/184 (31%), Gaps = 50/184 (27%)

Query: 16  TSVLEISWSYKKPIRAPWEMVLEVFFLTEPLAKGDSTLNT-PVHNRSLKLSLSVVEWYLD 74
           T +L + W           MV+        L +     +T  + +  L+L + +      
Sbjct: 389 TILLSLIWFDVIKSD---VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN---- 441

Query: 75  GSVESKVNRVIMDKKLWVEDDGGRRYSDSDKNDKKSK----------MKELDKNNEGSIS 124
              E  ++R I+D       +  + +   D                 +K ++     ++ 
Sbjct: 442 ---EYALHRSIVDH-----YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493

Query: 125 NLVLM---------RKSNLGQSAP-SLSNSMKDLTVPSGCLRKTSRIHAHRKSFIANTSP 174
            +V +         R  +   +A  S+ N+++ L           + +   K +I +  P
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL-----------KFY---KPYICDNDP 539

Query: 175 TLPR 178
              R
Sbjct: 540 KYER 543


>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
           7 linker; phosphorylation, cytosolic,
           transferase-transferase inhibitor complex; HET: DB8;
           3.55A {Homo sapiens}
          Length = 444

 Score = 28.4 bits (64), Expect = 2.7
 Identities = 3/25 (12%), Positives = 8/25 (32%)

Query: 109 KSKMKELDKNNEGSISNLVLMRKSN 133
           +S+   +    +G    +   R   
Sbjct: 418 QSEETRVWHRRDGKWQIVHFHRSGA 442


>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
           genomics, PSI-B protein structure initiative, NEW YORK
           structural genomics consortium; 1.54A {Homo sapiens}
           PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
          Length = 93

 Score = 25.9 bits (57), Expect = 4.9
 Identities = 5/21 (23%), Positives = 9/21 (42%)

Query: 104 DKNDKKSKMKELDKNNEGSIS 124
           D+   +  M  LD N +  + 
Sbjct: 51  DEAAFQKLMSNLDSNRDNEVD 71


>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
           a.39.1.2 PDB: 1ozo_A
          Length = 95

 Score = 25.5 bits (56), Expect = 6.6
 Identities = 6/21 (28%), Positives = 11/21 (52%)

Query: 104 DKNDKKSKMKELDKNNEGSIS 124
           DK+     +K+LD N +  + 
Sbjct: 50  DKDAVDKLLKDLDANGDAQVD 70


>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
           calcium/phospholipid binding protein,
           calcium-phospholipid protein complex; 2.25A {Homo
           sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
          Length = 96

 Score = 25.5 bits (56), Expect = 7.1
 Identities = 6/21 (28%), Positives = 10/21 (47%)

Query: 104 DKNDKKSKMKELDKNNEGSIS 124
           D       MK+LD+  +G + 
Sbjct: 47  DPLAVDKIMKDLDQCRDGKVG 67


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.312    0.127    0.374 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,518,497
Number of extensions: 186665
Number of successful extensions: 368
Number of sequences better than 10.0: 1
Number of HSP's gapped: 368
Number of HSP's successfully gapped: 8
Length of query: 253
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 162
Effective length of database: 4,160,982
Effective search space: 674079084
Effective search space used: 674079084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.5 bits)