RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16846
         (253 letters)



>d1xo5a_ a.39.1.5 (A:) Calcium- and integrin-binding protein, CIB
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 180

 Score = 27.0 bits (59), Expect = 1.6
 Identities = 10/51 (19%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 74  DGSVESKVNRVIMDKKLWVEDDGGRRYSDSDKNDKKSKMKELDKNNEGSIS 124
           DG++  +    ++   L  E +  R  +   K    + ++E D + +G+I+
Sbjct: 109 DGTLNREDLSRLV-NCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTIN 158


>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae
           (Chlamydomonas reinhardtii) [TaxId: 3055]}
          Length = 77

 Score = 25.2 bits (55), Expect = 2.4
 Identities = 7/26 (26%), Positives = 16/26 (61%), Gaps = 3/26 (11%)

Query: 112 MKELDKNNEGSISN---LVLMRKSNL 134
           + E D+N++  I     + +M+K++L
Sbjct: 51  IAEADRNDDNEIDEDEFIRIMKKTSL 76


>d2j8ga1 b.109.1.1 (A:191-339) C-terminal domain of endolysin
           {Bacteriophage cp-1 [TaxId: 10747]}
          Length = 149

 Score = 26.0 bits (56), Expect = 3.1
 Identities = 4/28 (14%), Positives = 13/28 (46%)

Query: 91  WVEDDGGRRYSDSDKNDKKSKMKELDKN 118
           W +D  G  +  ++ +   +K +++   
Sbjct: 12  WKQDSKGWWFRRNNGSFPYNKWEKIGGV 39


>d1a4pa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), P11
           s100a10, calpactin [TaxId: 9606]}
          Length = 92

 Score = 25.3 bits (55), Expect = 3.7
 Identities = 8/37 (21%), Positives = 16/37 (43%)

Query: 88  KKLWVEDDGGRRYSDSDKNDKKSKMKELDKNNEGSIS 124
           + L  ++  G   +  D       MK+LD+  +G + 
Sbjct: 31  RVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVG 67


>d1xk4c1 a.39.1.2 (C:4-86) Calcyclin (S100) {Human (Homo sapiens),
           s100a9 (mrp14) [TaxId: 9606]}
          Length = 83

 Score = 23.9 bits (52), Expect = 7.6
 Identities = 5/23 (21%), Positives = 13/23 (56%)

Query: 102 DSDKNDKKSKMKELDKNNEGSIS 124
           + ++   +  M++LD N +  +S
Sbjct: 50  NKNEKVIEHIMEDLDTNADKQLS 72


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.127    0.374 

Gapped
Lambda     K      H
   0.267   0.0472    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 871,053
Number of extensions: 37025
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 7
Length of query: 253
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 170
Effective length of database: 1,268,006
Effective search space: 215561020
Effective search space used: 215561020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.4 bits)