Query psy16847
Match_columns 208
No_of_seqs 116 out of 1064
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 23:35:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16847.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16847hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03749 proteasome_alpha_type_ 100.0 4.8E-50 1E-54 324.4 24.1 191 1-191 21-211 (211)
2 cd03750 proteasome_alpha_type_ 100.0 4.6E-49 1E-53 322.0 24.1 189 1-193 21-211 (227)
3 cd03751 proteasome_alpha_type_ 100.0 2.4E-48 5.2E-53 314.6 22.9 187 1-190 24-212 (212)
4 COG0638 PRE1 20S proteasome, a 100.0 4.6E-48 9.9E-53 317.3 23.0 187 2-193 24-214 (236)
5 cd03752 proteasome_alpha_type_ 100.0 6.5E-48 1.4E-52 312.4 23.4 187 1-190 23-213 (213)
6 cd03755 proteasome_alpha_type_ 100.0 2.1E-47 4.6E-52 308.2 23.2 184 1-190 21-207 (207)
7 cd03754 proteasome_alpha_type_ 100.0 2.2E-47 4.9E-52 309.6 23.2 188 1-190 22-215 (215)
8 cd03756 proteasome_alpha_arche 100.0 4.1E-47 8.8E-52 307.3 24.0 188 1-192 22-211 (211)
9 PTZ00246 proteasome subunit al 100.0 4.8E-47 1E-51 314.7 23.9 191 1-194 25-219 (253)
10 PRK03996 proteasome subunit al 100.0 6.9E-47 1.5E-51 311.7 23.9 190 1-194 30-221 (241)
11 TIGR03633 arc_protsome_A prote 100.0 7.5E-47 1.6E-51 308.4 23.6 190 1-194 23-214 (224)
12 cd03760 proteasome_beta_type_4 100.0 8.2E-47 1.8E-51 302.6 22.8 186 6-194 1-191 (197)
13 cd03759 proteasome_beta_type_3 100.0 2.8E-46 6E-51 299.1 22.6 183 6-195 2-189 (195)
14 cd03758 proteasome_beta_type_2 100.0 3.8E-46 8.1E-51 297.8 23.1 184 8-196 2-189 (193)
15 cd01911 proteasome_alpha prote 100.0 4E-46 8.7E-51 301.1 22.6 186 1-190 21-209 (209)
16 cd03761 proteasome_beta_type_5 100.0 4.9E-46 1.1E-50 296.1 22.6 181 8-195 1-184 (188)
17 cd03753 proteasome_alpha_type_ 100.0 7.8E-46 1.7E-50 300.2 23.1 186 1-190 21-213 (213)
18 KOG0176|consensus 100.0 6.9E-47 1.5E-51 291.5 15.9 189 1-193 28-223 (241)
19 TIGR03634 arc_protsome_B prote 100.0 3.8E-45 8.3E-50 290.1 23.1 181 7-194 1-184 (185)
20 cd03757 proteasome_beta_type_1 100.0 3.2E-45 6.9E-50 296.5 22.3 190 3-197 4-204 (212)
21 cd03763 proteasome_beta_type_7 100.0 2.6E-44 5.7E-49 286.3 23.3 185 8-200 1-189 (189)
22 KOG0183|consensus 100.0 1.7E-45 3.8E-50 286.8 14.1 190 1-194 24-216 (249)
23 KOG0181|consensus 100.0 2.2E-45 4.7E-50 282.6 13.9 189 1-193 26-216 (233)
24 cd03764 proteasome_beta_archea 100.0 9.8E-44 2.1E-48 282.7 23.4 180 8-194 1-183 (188)
25 cd03765 proteasome_beta_bacter 100.0 8E-44 1.7E-48 291.2 23.4 186 8-197 1-204 (236)
26 PTZ00488 Proteasome subunit be 100.0 3.6E-44 7.7E-49 295.9 20.9 182 4-194 36-222 (247)
27 PF00227 Proteasome: Proteasom 100.0 9E-44 1.9E-48 282.6 22.5 184 4-190 1-190 (190)
28 cd03762 proteasome_beta_type_6 100.0 2.4E-43 5.2E-48 280.5 22.6 180 8-195 1-184 (188)
29 TIGR03691 20S_bact_alpha prote 100.0 2.3E-43 4.9E-48 287.9 22.3 184 1-193 21-210 (228)
30 TIGR03690 20S_bact_beta protea 100.0 3.1E-43 6.8E-48 286.1 22.7 185 6-194 1-198 (219)
31 KOG0863|consensus 100.0 6.4E-44 1.4E-48 280.8 17.6 193 1-193 26-218 (264)
32 cd01912 proteasome_beta protea 100.0 8.9E-43 1.9E-47 277.1 22.7 182 8-196 1-186 (189)
33 KOG0178|consensus 100.0 1E-42 2.3E-47 270.7 17.7 191 1-193 25-219 (249)
34 cd01906 proteasome_protease_Hs 100.0 1.2E-41 2.7E-46 268.6 23.7 178 8-190 1-182 (182)
35 KOG0184|consensus 100.0 1.9E-42 4.1E-47 271.1 17.1 190 1-193 28-219 (254)
36 KOG0182|consensus 100.0 1.1E-40 2.4E-45 259.5 18.8 192 1-194 29-224 (246)
37 KOG0179|consensus 100.0 2.1E-38 4.5E-43 246.4 17.9 195 4-203 26-233 (235)
38 KOG0175|consensus 100.0 3.9E-35 8.4E-40 234.3 16.0 191 4-201 68-262 (285)
39 KOG0173|consensus 100.0 4.9E-34 1.1E-38 227.5 17.6 194 2-203 32-231 (271)
40 KOG0185|consensus 100.0 3.3E-33 7.3E-38 220.7 16.4 198 5-205 39-243 (256)
41 KOG0177|consensus 100.0 5.8E-33 1.3E-37 213.0 16.2 183 9-196 3-189 (200)
42 KOG0174|consensus 100.0 1E-32 2.2E-37 212.4 15.9 191 4-202 16-210 (224)
43 KOG0180|consensus 100.0 9.4E-32 2E-36 203.6 17.6 183 6-195 7-194 (204)
44 cd01913 protease_HslV Protease 100.0 9.7E-31 2.1E-35 203.4 18.2 163 8-190 1-171 (171)
45 cd01901 Ntn_hydrolase The Ntn 100.0 4.7E-30 1E-34 196.9 21.7 159 8-171 1-163 (164)
46 PRK05456 ATP-dependent proteas 100.0 8.6E-31 1.9E-35 204.8 17.6 165 7-189 1-171 (172)
47 TIGR03692 ATP_dep_HslV ATP-dep 100.0 1.4E-29 3E-34 196.9 17.7 163 8-189 1-170 (171)
48 COG3484 Predicted proteasome-t 99.3 2.1E-11 4.5E-16 95.5 12.5 182 8-193 2-201 (255)
49 COG5405 HslV ATP-dependent pro 99.3 2.7E-11 5.9E-16 91.7 12.6 167 6-192 3-177 (178)
50 PF09894 DUF2121: Uncharacteri 97.2 0.0069 1.5E-07 47.8 11.1 151 8-193 2-180 (194)
51 COG4079 Uncharacterized protei 93.7 3.5 7.5E-05 34.0 13.8 153 8-193 2-181 (293)
52 KOG3361|consensus 85.4 1.9 4E-05 32.2 4.5 42 120-163 71-112 (157)
53 PF07499 RuvA_C: RuvA, C-termi 55.4 9.9 0.00022 22.8 1.8 34 135-169 12-45 (47)
54 PF11211 DUF2997: Protein of u 46.9 36 0.00078 20.7 3.3 32 120-151 3-34 (48)
55 PF05593 RHS_repeat: RHS Repea 42.3 32 0.0007 19.4 2.5 26 113-138 2-27 (38)
56 TIGR02261 benz_CoA_red_D benzo 40.8 46 0.001 27.9 4.2 52 109-169 104-158 (262)
57 PF04539 Sigma70_r3: Sigma-70 39.2 63 0.0014 21.0 4.0 32 60-91 3-34 (78)
58 PF14804 Jag_N: Jag N-terminus 38.1 54 0.0012 20.2 3.2 30 156-193 4-33 (52)
59 KOG3652|consensus 37.4 88 0.0019 30.0 5.7 111 49-174 192-305 (1215)
60 TIGR03192 benz_CoA_bzdQ benzoy 34.4 74 0.0016 27.2 4.5 51 107-166 130-183 (293)
61 PF06057 VirJ: Bacterial virul 33.2 69 0.0015 25.6 3.9 34 76-113 43-76 (192)
62 PF07104 DUF1366: Protein of u 32.4 41 0.0009 24.6 2.3 51 122-175 11-61 (116)
63 TIGR01643 YD_repeat_2x YD repe 32.1 57 0.0012 18.4 2.5 9 122-130 11-19 (42)
64 PF08289 Flu_M1_C: Influenza M 30.3 1.8E+02 0.004 19.9 5.3 51 49-99 38-88 (95)
65 PF13066 DUF3929: Protein of u 30.1 80 0.0017 19.8 2.9 22 2-23 40-61 (65)
66 TIGR02259 benz_CoA_red_A benzo 29.4 82 0.0018 28.3 4.0 52 109-169 274-328 (432)
67 PF04312 DUF460: Protein of un 28.5 2.3E+02 0.0049 21.4 5.7 29 106-134 31-60 (138)
68 PRK14603 ruvA Holliday junctio 26.9 83 0.0018 25.1 3.4 37 134-170 160-196 (197)
69 PF06018 CodY: CodY GAF-like d 25.3 3.4E+02 0.0073 21.3 7.9 67 59-150 2-68 (177)
70 COG4728 Uncharacterized protei 25.2 72 0.0016 22.8 2.4 31 37-67 9-39 (124)
71 PRK14602 ruvA Holliday junctio 25.0 1.2E+02 0.0026 24.3 4.0 39 133-171 162-200 (203)
72 PF08269 Cache_2: Cache domain 24.9 85 0.0018 21.3 2.8 54 143-202 19-76 (95)
73 COG0822 IscU NifU homolog invo 23.9 3.3E+02 0.0071 20.7 6.1 54 117-173 43-99 (150)
74 COG4537 ComGC Competence prote 22.3 1.8E+02 0.0039 20.8 3.9 27 57-83 50-77 (107)
75 PF01458 UPF0051: Uncharacteri 22.1 1.3E+02 0.0028 24.3 3.8 47 117-170 183-229 (229)
76 cd01947 Guanosine_kinase_like 21.0 3.9E+02 0.0084 21.4 6.5 61 103-169 188-254 (265)
77 KOG0083|consensus 20.9 91 0.002 23.6 2.4 91 6-112 8-111 (192)
78 COG3140 Uncharacterized protei 20.9 2E+02 0.0044 18.1 3.5 35 141-177 14-48 (60)
79 COG3193 GlcG Uncharacterized p 20.7 1.8E+02 0.0039 22.0 4.0 36 155-195 6-41 (141)
80 PF01242 PTPS: 6-pyruvoyl tetr 20.6 2.2E+02 0.0047 20.4 4.4 46 50-95 43-98 (123)
81 COG4245 TerY Uncharacterized p 20.5 81 0.0018 25.2 2.1 62 117-206 5-66 (207)
82 PF03681 UPF0150: Uncharacteri 20.3 1.4E+02 0.003 17.5 2.8 17 158-174 30-46 (48)
No 1
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.8e-50 Score=324.41 Aligned_cols=191 Identities=62% Similarity=1.026 Sum_probs=182.9
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCcccccccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPV 80 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 80 (208)
++|+++|+|+|||+++||||||+|+|.++++.+..+|||+|+++++|++||+.+|++.+.+++|.+++.|++++++++++
T Consensus 21 ~~av~~G~t~IgIk~~dgVvlaad~r~~~~l~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v 100 (211)
T cd03749 21 MEAVKQGSATVGLKSKTHAVLVALKRATSELSSYQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECLNYRFVYDSPIPV 100 (211)
T ss_pred HHHHhcCCCEEEEEeCCEEEEEEeccCccccCCccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 47899999999999999999999999988877778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCCHH
Q psy16847 81 FRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLE 160 (208)
Q Consensus 81 ~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s~~ 160 (208)
+.+++.++..+|+||++++.|||++++||+|||++||+||++||+|++.+++++|+|++++.++++||++|+++++|+++
T Consensus 101 ~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~gp~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~ms~e 180 (211)
T cd03749 101 SRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDESGPHLFQTCPSGNYFEYKATSIGARSQSARTYLERHFEEFEDCSLE 180 (211)
T ss_pred HHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCCCCeEEEECCCcCEeeeeEEEECCCcHHHHHHHHHhhccccCCCHH
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999976799999
Q ss_pred HHHHHHHHHHHhhCCCCcCCCCCcEEEEEEe
Q psy16847 161 EIVKHGLRALRDTLPNDSELTTKVRYSYVLT 191 (208)
Q Consensus 161 eai~l~~~al~~~~~~d~~~~~~~i~v~vi~ 191 (208)
|++++++++|+.++++|..+++++|||++|+
T Consensus 181 e~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 181 ELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 9999999999999998833899999999984
No 2
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.6e-49 Score=322.00 Aligned_cols=189 Identities=31% Similarity=0.526 Sum_probs=181.8
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCccccc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTL 78 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 78 (208)
++|+++|+|+|||+++||||||+|+|.++++. ++.+||++|++|++|+++|+.+|++.+.+++|.+++.|++.+|+++
T Consensus 21 ~~av~~G~t~igik~~dgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~ 100 (227)
T cd03750 21 LAAVSSGAPSVGIKAANGVVLATEKKVPSPLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIAQQYYLVYGEPI 100 (227)
T ss_pred HHHHHcCCCEEEEEeCCEEEEEEeecCCccccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHHHHHHCCCC
Confidence 47899999999999999999999999987764 5789999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCC
Q psy16847 79 PVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEAS 158 (208)
Q Consensus 79 ~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s 158 (208)
+++.+++.|++.+|+|+++++.|||++++||+|||++||+||++||+|++.+++++|+|++++.++++||++|+ ++|+
T Consensus 101 ~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~--~~ms 178 (227)
T cd03750 101 PVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEGGPYLYQVDPSGSYFTWKATAIGKNYSNAKTFLEKRYN--EDLE 178 (227)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCCCCEEEEECCCCCEEeeeEEEECCCCHHHHHHHHhhcc--CCCC
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999 7999
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeec
Q psy16847 159 LEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVS 193 (208)
Q Consensus 159 ~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~ 193 (208)
++||++++++||+.+.+|| +++++++|++++++
T Consensus 179 ~eeai~l~~~~l~~~~~~~--l~~~~iev~iv~~~ 211 (227)
T cd03750 179 LEDAIHTAILTLKEGFEGQ--MTEKNIEIGICGET 211 (227)
T ss_pred HHHHHHHHHHHHHHHhccc--CCCCcEEEEEEECC
Confidence 9999999999999999886 69999999999985
No 3
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.4e-48 Score=314.56 Aligned_cols=187 Identities=30% Similarity=0.377 Sum_probs=178.2
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCccccc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTL 78 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 78 (208)
+||+++|+|+|||+++||||||+|+|.++.+. ++.+|||+|++|++|++||+.+|++.+.+++|.+++.|++.+++++
T Consensus 24 ~~a~~~G~tvIgik~kdgVvla~d~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~~ 103 (212)
T cd03751 24 NKAVENSGTAIGIRCKDGVVLAVEKLVTSKLYEPGSNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEAENYRDNYGTPI 103 (212)
T ss_pred HHHHhcCCCEEEEEeCCEEEEEEEccccccccCcchhcceeEecCcEEEEEEEChHhHHHHHHHHHHHHHHHHHHHCCCC
Confidence 47899999999999999999999999988764 5789999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCC
Q psy16847 79 PVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEAS 158 (208)
Q Consensus 79 ~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s 158 (208)
+++.+++.|++.+|.|++++++|||++++||+|||++||+||++||+|++.+++++|+|+++..++++||++|+ ++|+
T Consensus 104 ~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~gp~Ly~~D~~Gs~~~~~~~a~G~g~~~a~~~Lek~~~--~dms 181 (212)
T cd03751 104 PVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSDGPQLYMIEPSGVSYGYFGCAIGKGKQAAKTELEKLKF--SELT 181 (212)
T ss_pred CHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCCcCEEEEECCCCCEEeeEEEEECCCCHHHHHHHHHhcc--CCCC
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999 7999
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEE
Q psy16847 159 LEEIVKHGLRALRDTLPNDSELTTKVRYSYVL 190 (208)
Q Consensus 159 ~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi 190 (208)
++||+++++++|+.+++.+ ...+.+|||.++
T Consensus 182 ~eeai~l~~~~L~~~~~~~-~~~~~~iei~~~ 212 (212)
T cd03751 182 CREAVKEAAKIIYIVHDEI-KDKAFELELSWV 212 (212)
T ss_pred HHHHHHHHHHHHHHHhhcc-CCCCccEEEEEC
Confidence 9999999999999999754 478999999874
No 4
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-48 Score=317.30 Aligned_cols=187 Identities=44% Similarity=0.626 Sum_probs=177.9
Q ss_pred cccccC-CcEEEEEeCCEEEEEEEecCccccc---ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy16847 2 EAVKQG-SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDT 77 (208)
Q Consensus 2 ~av~~G-~tvigi~~~dgVVla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 77 (208)
+|+++| +|+|||+++||||||+|||.++++. ++.+|||+|+||++|++||+.+|++.++++++.+++.|++.++++
T Consensus 24 ~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~~~~~~~~ 103 (236)
T COG0638 24 EAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARAEAQLYRLRYGEP 103 (236)
T ss_pred HHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCC
Confidence 566665 9999999999999999999999964 468999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCC
Q psy16847 78 LPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA 157 (208)
Q Consensus 78 i~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~ 157 (208)
|+++.+++++++.+|.|+++ +|||++++++||+|+++|+||++||+|++.++++.|+|+|++.++++||++|+ ++|
T Consensus 104 i~v~~la~~ls~~l~~~~~~--~rP~gv~~iiaG~d~~~p~Ly~~Dp~G~~~~~~~~a~Gsgs~~a~~~Le~~y~--~~m 179 (236)
T COG0638 104 ISVEALAKLLSNILQEYTQS--GRPYGVSLLVAGVDDGGPRLYSTDPSGSYNEYKATAIGSGSQFAYGFLEKEYR--EDL 179 (236)
T ss_pred CCHHHHHHHHHHHHHHhccC--cccceEEEEEEEEcCCCCeEEEECCCCceeecCEEEEcCCcHHHHHHHHhhcc--CCC
Confidence 99999999999999999987 79999999999999877999999999999999999999999999999999998 899
Q ss_pred CHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeec
Q psy16847 158 SLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVS 193 (208)
Q Consensus 158 s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~ 193 (208)
++|||++++++||+.+++|| ..++.+++|++|+++
T Consensus 180 ~~eeai~la~~al~~a~~rd-~~s~~~~~v~vi~~~ 214 (236)
T COG0638 180 SLEEAIELAVKALRAAIERD-AASGGGIEVAVITKD 214 (236)
T ss_pred CHHHHHHHHHHHHHHHHhcc-ccCCCCeEEEEEEcC
Confidence 99999999999999999999 478899999999995
No 5
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.5e-48 Score=312.42 Aligned_cols=187 Identities=34% Similarity=0.505 Sum_probs=179.2
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCccccc---ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDT 77 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 77 (208)
+||+++|+|+|||+++||||||+|+|.++++. +..+||++|++|++|++||+.+|++.+.+++|.+++.|+++++++
T Consensus 23 ~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~ 102 (213)
T cd03752 23 MEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYARLIAQRYLYSYQEP 102 (213)
T ss_pred HHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHHHHHHHHHHHHHHHHHHCCC
Confidence 47899999999999999999999999999864 378999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeC-CCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCC
Q psy16847 78 LPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 156 (208)
Q Consensus 78 i~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~-~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~ 156 (208)
|+++.+++.|+..+|.|||.++.|||++++||+|||+ .||+||.+||+|++.+++++|+|+++..++++||++|+ |+
T Consensus 103 i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~y~--~~ 180 (213)
T cd03752 103 IPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKATAIGNNNQAAQSLLKQDYK--DD 180 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHhcc--CC
Confidence 9999999999999999999999999999999999995 68999999999999999999999999999999999999 89
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEE
Q psy16847 157 ASLEEIVKHGLRALRDTLPNDSELTTKVRYSYVL 190 (208)
Q Consensus 157 ~s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi 190 (208)
|+++||++++++||+.+.+|| ..++++++++++
T Consensus 181 ms~eea~~l~~~al~~~~~r~-~~~~~~~ei~~~ 213 (213)
T cd03752 181 MTLEEALALAVKVLSKTMDST-KLTSEKLEFATL 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEC
Confidence 999999999999999999998 589999999875
No 6
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.1e-47 Score=308.16 Aligned_cols=184 Identities=34% Similarity=0.538 Sum_probs=175.4
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCccccc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTL 78 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 78 (208)
++|+++|+|+|||+++||||||+|++...++. +..+||++|++|++|++||+.+|++.+.+++|.+++.|++.++++|
T Consensus 21 ~~av~~G~t~Igik~~dgVvlaad~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i 100 (207)
T cd03755 21 QEAVRKGTTAVGVRGKDCVVLGVEKKSVAKLQDPRTVRKICMLDDHVCLAFAGLTADARVLINRARLECQSHRLTVEDPV 100 (207)
T ss_pred HHHHHcCCCEEEEEeCCEEEEEEecCCCCcccCCCccCcEEEECCCEEEEEecchhhHHHHHHHHHHHHHHHHHHHCCCC
Confidence 47899999999999999999999999877764 4689999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeC-CCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCC
Q psy16847 79 PVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA 157 (208)
Q Consensus 79 ~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~-~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~ 157 (208)
+++.+++.++..+|+|++++++|||++++||+|||+ .||+||.+||+|++.+++++|+|++++.++++||++|+ |+|
T Consensus 101 ~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~--~~m 178 (207)
T cd03755 101 TVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAIGRNSKTVREFLEKNYK--EEM 178 (207)
T ss_pred CHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEECCCCHHHHHHHHhhcc--CCC
Confidence 999999999999999999999999999999999996 47999999999999999999999999999999999999 899
Q ss_pred CHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEE
Q psy16847 158 SLEEIVKHGLRALRDTLPNDSELTTKVRYSYVL 190 (208)
Q Consensus 158 s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi 190 (208)
+++||++++++||+.+.+ .+++++||+++
T Consensus 179 s~eeai~l~~~~l~~~~~----~~~~~~e~~~~ 207 (207)
T cd03755 179 TRDDTIKLAIKALLEVVQ----SGSKNIELAVM 207 (207)
T ss_pred CHHHHHHHHHHHHHHHhC----CCCCeEEEEEC
Confidence 999999999999999983 68999999985
No 7
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.2e-47 Score=309.63 Aligned_cols=188 Identities=30% Similarity=0.480 Sum_probs=176.3
Q ss_pred Cccccc-CCcEEEEEeCCEEEEEEEecCccccc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy16847 1 MEAVKQ-GSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDT 77 (208)
Q Consensus 1 ~~av~~-G~tvigi~~~dgVVla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 77 (208)
+||+++ |+|+|||+++||||||+|+|.+.++. +..+|||+|+++++|++||+.+|++.+.+++|.++..|+++++++
T Consensus 22 ~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~ 101 (215)
T cd03754 22 FKAVKNAGLTSVAVRGKDCAVVVTQKKVPDKLIDPSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYEAAEFKYKYGYE 101 (215)
T ss_pred HHHHhcCCccEEEEEeCCEEEEEEeccccccccCCcccCceEEEcCCEEEEEEechhhHHHHHHHHHHHHHHHHHHHCCC
Confidence 478875 78999999999999999999988863 578899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeC-CCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCC
Q psy16847 78 LPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 156 (208)
Q Consensus 78 i~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~-~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~ 156 (208)
|+++.+|+.+++++|.|+++++.|||++++||||||+ +||+||++||+|++.+++++|+|++++.++++||++|++..+
T Consensus 102 i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~~~ 181 (215)
T cd03754 102 MPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATAAGVKEQEATNFLEKKLKKKPD 181 (215)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEEECCCcHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999995 689999999999999999999999999999999999994335
Q ss_pred C--CHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEE
Q psy16847 157 A--SLEEIVKHGLRALRDTLPNDSELTTKVRYSYVL 190 (208)
Q Consensus 157 ~--s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi 190 (208)
| +++||++++++||+.+.+|| ++++++||+++
T Consensus 182 ~~~s~eeai~l~~~al~~~~~rd--~~~~~~ei~~~ 215 (215)
T cd03754 182 LIESYEETVELAISCLQTVLSTD--FKATEIEVGVV 215 (215)
T ss_pred cCCCHHHHHHHHHHHHHHHhccc--CCCCcEEEEEC
Confidence 7 99999999999999999998 57999999875
No 8
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.1e-47 Score=307.34 Aligned_cols=188 Identities=38% Similarity=0.516 Sum_probs=179.8
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCccccc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTL 78 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 78 (208)
+||+++|+|+|||+++||||+|+|++.+.++. ++.+||++|+++++|++||+.+|++.+.+.++.+++.|++++++++
T Consensus 22 ~~av~~G~t~igik~~dgvvla~d~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~ 101 (211)
T cd03756 22 REAVKRGTTALGIKCKEGVVLAVDKRITSKLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIHRLTYGEPI 101 (211)
T ss_pred HHHHHcCCCEEEEEECCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 47899999999999999999999999987753 6789999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCC
Q psy16847 79 PVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEAS 158 (208)
Q Consensus 79 ~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s 158 (208)
+++.+++.++..+|.|++++++|||++++||+|||+.||+||.+||+|++.+++++|+|++++.++++||++|+ |+|+
T Consensus 102 ~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~--~~m~ 179 (211)
T cd03756 102 DVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYNEYKATAIGSGRQAVTEFLEKEYK--EDMS 179 (211)
T ss_pred CHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCCCCEEEEECCCCCeeeeEEEEECCCCHHHHHHHHhhcc--CCCC
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEee
Q psy16847 159 LEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTV 192 (208)
Q Consensus 159 ~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~ 192 (208)
++||++++++||+.+.++| +++++++|++|+.
T Consensus 180 ~~ea~~l~~~~l~~~~~~~--~~~~~~~v~ii~~ 211 (211)
T cd03756 180 LEEAIELALKALYAALEEN--ETPENVEIAYVTV 211 (211)
T ss_pred HHHHHHHHHHHHHHHhccc--CCCCcEEEEEEeC
Confidence 9999999999999999876 5999999999973
No 9
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=4.8e-47 Score=314.69 Aligned_cols=191 Identities=32% Similarity=0.428 Sum_probs=182.5
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCccccc---ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDT 77 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 77 (208)
+||+++|+|+|||+++||||||+|+|.++++. ++.+|||+|+++++|+++|+.+|++.+.+.+|.+++.|++.++++
T Consensus 25 ~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~ 104 (253)
T PTZ00246 25 LEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLYAQRYRYTYGEP 104 (253)
T ss_pred HHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 48999999999999999999999999999974 357999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeC-CCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCC
Q psy16847 78 LPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 156 (208)
Q Consensus 78 i~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~-~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~ 156 (208)
++++.+++.++..+|.|+|++++|||++++||+|||+ .||+||.+||+|++.+++++|+|++++.++++||++|+ ++
T Consensus 105 ~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~~a~G~gs~~~~~~Le~~~~--~~ 182 (253)
T PTZ00246 105 QPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKATAIGQNNQTAQSILKQEWK--ED 182 (253)
T ss_pred CCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecceEEEECCCcHHHHHHHHHhcc--CC
Confidence 9999999999999999999999999999999999995 68999999999999999999999999999999999999 89
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeece
Q psy16847 157 ASLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVSI 194 (208)
Q Consensus 157 ~s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~ 194 (208)
|+++||++++++||+.+.+|| ..++++++|++|+++.
T Consensus 183 ms~eeai~l~~~al~~~~~~d-~~s~~~vev~ii~~~~ 219 (253)
T PTZ00246 183 LTLEQGLLLAAKVLTKSMDST-SPKADKIEVGILSHGE 219 (253)
T ss_pred CCHHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEecCC
Confidence 999999999999999999998 5899999999999763
No 10
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=6.9e-47 Score=311.71 Aligned_cols=190 Identities=36% Similarity=0.508 Sum_probs=181.6
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCccccc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTL 78 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 78 (208)
+||+++|+|+|||+++||||||+|+|.++++. ++.+||++|++|++|++||+.+|++.++++++.+++.|++.+++++
T Consensus 30 ~~av~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 109 (241)
T PRK03996 30 REAVKRGTTAVGVKTKDGVVLAVDKRITSPLIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRARVEAQINRLTYGEPI 109 (241)
T ss_pred HHHHHhCCCEEEEEeCCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 47899999999999999999999999987764 5789999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCC
Q psy16847 79 PVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEAS 158 (208)
Q Consensus 79 ~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s 158 (208)
+++.+++++++.+|.|++++++|||++++||||||++||+||.+||+|++.+++++|+|++++.++++||++|+ ++|+
T Consensus 110 ~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~--~~~s 187 (241)
T PRK03996 110 GVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYLEYKATAIGAGRDTVMEFLEKNYK--EDLS 187 (241)
T ss_pred CHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCCcCEEEEECCCCCeecceEEEECCCcHHHHHHHHHhcc--cCCC
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeece
Q psy16847 159 LEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVSI 194 (208)
Q Consensus 159 ~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~ 194 (208)
++||++++++||+.+.++ ..++++++|++++++.
T Consensus 188 ~eeai~l~~~al~~~~~~--~~~~~~i~i~ii~~~~ 221 (241)
T PRK03996 188 LEEAIELALKALAKANEG--KLDPENVEIAYIDVET 221 (241)
T ss_pred HHHHHHHHHHHHHHHhcc--CCCCCcEEEEEEECCC
Confidence 999999999999999875 3689999999999874
No 11
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=7.5e-47 Score=308.36 Aligned_cols=190 Identities=37% Similarity=0.519 Sum_probs=181.7
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCccccc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTL 78 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 78 (208)
++|+++|+|+|||+++||||||+|+|.++++. ++.+||++|+++++|++||+.+|++.+.+.++.++..|++.+++++
T Consensus 23 ~~av~~G~tvigi~~~dgvvlaad~r~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 102 (224)
T TIGR03633 23 REAVKRGTTAVGIKTKDGVVLAVDKRITSKLVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRARIEAQINRLTYGEPI 102 (224)
T ss_pred HHHHHcCCCEEEEEECCEEEEEEeccCCccccCCCccceEEEECCCEEEEEeecHHhHHHHHHHHHHHHHHHHHHHCCCC
Confidence 47899999999999999999999999987753 6789999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCC
Q psy16847 79 PVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEAS 158 (208)
Q Consensus 79 ~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s 158 (208)
+++.+++.+++.+|.|++++++|||++++||+|+|+.||+||.+||.|++.+++++|+|+++..++++||+.|+ |+|+
T Consensus 103 ~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~~~~~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~--~~~~ 180 (224)
T TIGR03633 103 DVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGALLEYKATAIGAGRQAVTEFLEKEYR--EDLS 180 (224)
T ss_pred CHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeCCcCEEEEECCCCCeecceEEEECCCCHHHHHHHHHhcc--CCCC
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeece
Q psy16847 159 LEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVSI 194 (208)
Q Consensus 159 ~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~ 194 (208)
++||++++++||+.+.+ | ..++++++|++|+++.
T Consensus 181 ~eeai~l~~~al~~~~~-d-~~~~~~i~i~ii~~~g 214 (224)
T TIGR03633 181 LDEAIELALKALYSAVE-D-KLTPENVEVAYITVED 214 (224)
T ss_pred HHHHHHHHHHHHHHHhc-c-cCCCCcEEEEEEEcCC
Confidence 99999999999999997 6 5899999999999874
No 12
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.2e-47 Score=302.56 Aligned_cols=186 Identities=19% Similarity=0.167 Sum_probs=173.3
Q ss_pred cCCcEEEEEeCCEEEEEEEecCccc-cc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHH-HHHHHcCCCCCHH
Q psy16847 6 QGSATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECL-NYKYAHKDTLPVF 81 (208)
Q Consensus 6 ~G~tvigi~~~dgVVla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~i~~~ 81 (208)
.|+|+|||+++||||||+|+|.+.+ +. +..+|||+|++|++++++|+.+|++.+++++|.+++ .|++.++.+++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 4899999999999999999999854 43 578999999999999999999999999999999987 5778899999999
Q ss_pred HHHHHHHHHHHHHhhccCCCccceeeEEEEEeC-CCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCCHH
Q psy16847 82 RLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLE 160 (208)
Q Consensus 82 ~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~-~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s~~ 160 (208)
.+++++++.+ |++++++|||++++||||||+ +||+||++||+|++.+++++|+|+++++++++||+.|+++++|++|
T Consensus 81 ~la~~i~~~~--y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~e 158 (197)
T cd03760 81 EIHSYLTRVL--YNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEE 158 (197)
T ss_pred HHHHHHHHHH--HHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHH
Confidence 9999999986 899988999999999999996 6899999999999999999999999999999999999932399999
Q ss_pred HHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeece
Q psy16847 161 EIVKHGLRALRDTLPNDSELTTKVRYSYVLTVSI 194 (208)
Q Consensus 161 eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~ 194 (208)
||++++++||+.+.+|| ..++++++|++|++++
T Consensus 159 ea~~l~~~~l~~~~~rd-~~~~~~~~i~ii~~~g 191 (197)
T cd03760 159 EARALIEECMKVLYYRD-ARSINKYQIAVVTKEG 191 (197)
T ss_pred HHHHHHHHHHHHHHHhc-cccCCceEEEEECCCC
Confidence 99999999999999999 4899999999999984
No 13
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.8e-46 Score=299.07 Aligned_cols=183 Identities=21% Similarity=0.253 Sum_probs=172.1
Q ss_pred cCCcEEEEEeCCEEEEEEEecCccccc---ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Q psy16847 6 QGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFR 82 (208)
Q Consensus 6 ~G~tvigi~~~dgVVla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~ 82 (208)
+|+|+|||+++||||||+|+|.++++. ++.+|||+|++|++|++||+.+|++.+.+++|.+++.|++.++.+|+++.
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 81 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT 81 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 699999999999999999999999974 36799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCccceeeEEEEEeCC-CcEEEEECCCCceeece-EEeeCCCcHHHHHHHHHhhCCCCCCCHH
Q psy16847 83 LISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-GPHIYQTCPSSNYYDVK-AMAIGSRSQSARTYLEKRLADFPEASLE 160 (208)
Q Consensus 83 la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~-g~~ly~vd~~G~~~~~~-~~a~G~~~~~~~~~Le~~~~~~~~~s~~ 160 (208)
++++|++.+ |++| .|||++++||||||++ ||+||++||+|++..++ ++|+|+|++.++++||+.|+ |+|+++
T Consensus 82 la~~l~~~l--y~~r--~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~--~~~s~~ 155 (195)
T cd03759 82 FSSLISSLL--YEKR--FGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWR--PDMEPD 155 (195)
T ss_pred HHHHHHHHH--HHhc--CCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccC--CCCCHH
Confidence 999999987 6765 3799999999999954 59999999999998887 99999999999999999999 899999
Q ss_pred HHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeecee
Q psy16847 161 EIVKHGLRALRDTLPNDSELTTKVRYSYVLTVSIH 195 (208)
Q Consensus 161 eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~~ 195 (208)
||++++++||+.+.+|| ..++++++|++|+++++
T Consensus 156 ea~~l~~~~l~~~~~rd-~~~~~~~~i~ii~~~g~ 189 (195)
T cd03759 156 ELFETISQALLSAVDRD-ALSGWGAVVYIITKDKV 189 (195)
T ss_pred HHHHHHHHHHHHHHhhC-cccCCceEEEEEcCCcE
Confidence 99999999999999999 58999999999998843
No 14
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.8e-46 Score=297.84 Aligned_cols=184 Identities=20% Similarity=0.258 Sum_probs=173.9
Q ss_pred CcEEEEEeCCEEEEEEEecCcccc-c--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q psy16847 8 SATVGLKNKTHAVIIALKRAASEL-A--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 84 (208)
Q Consensus 8 ~tvigi~~~dgVVla~d~~~~~~l-~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 84 (208)
+|+|||+++||||||+|+|.+.+. . ++.+|||+|++++++++||+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 589999999999999999998764 3 5889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCccceeeEEEEEeC-CCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCCHHHHH
Q psy16847 85 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIV 163 (208)
Q Consensus 85 ~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~-~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s~~eai 163 (208)
+++++.+|.|+|+. |||++++||+|||+ .||+||++||+|++.+++++|+|+|++.++++||+.|+ |+|+.|||+
T Consensus 82 ~~l~~~~~~~~~~~--rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~--~~ms~eeai 157 (193)
T cd03758 82 NFTRRELAESLRSR--TPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYK--PDMTVEEAL 157 (193)
T ss_pred HHHHHHHHHHhhcC--CCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccC--CCCCHHHHH
Confidence 99999999887653 89999999999995 67999999999999999999999999999999999998 899999999
Q ss_pred HHHHHHHHhhCCCCcCCCCCcEEEEEEeeceee
Q psy16847 164 KHGLRALRDTLPNDSELTTKVRYSYVLTVSIHS 196 (208)
Q Consensus 164 ~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~~~ 196 (208)
+++++||+.+.+|| ..++++++|++|++++..
T Consensus 158 ~l~~~a~~~~~~rd-~~~~~~i~i~ii~~~g~~ 189 (193)
T cd03758 158 ELMKKCIKELKKRF-IINLPNFTVKVVDKDGIR 189 (193)
T ss_pred HHHHHHHHHHHHhc-cccCCceEEEEEcCCCeE
Confidence 99999999999999 489999999999998554
No 15
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=4e-46 Score=301.07 Aligned_cols=186 Identities=45% Similarity=0.693 Sum_probs=178.2
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCccccc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTL 78 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 78 (208)
+||+++|+|+||++++||||+|+|+|.+.++. ++.+||++|++++++++||+.+|++.+.+.++.++..|++.+|+++
T Consensus 21 ~~~~~~G~tvigi~~~dgVvlaaD~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~g~~~ 100 (209)
T cd01911 21 LEAVKNGSTAVGIKGKDGVVLAVEKKVTSKLLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQNYRYTYGEPI 100 (209)
T ss_pred HHHHHcCCCEEEEEECCEEEEEEEecCCccccCCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCC
Confidence 37889999999999999999999999988764 5789999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCC-CcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCC
Q psy16847 79 PVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-GPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA 157 (208)
Q Consensus 79 ~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~-g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~ 157 (208)
+++.+|+++++.+|+|++++++|||+++++|+|||++ ||+||.+||.|++.+++++|+|+++..++++||+.|+ |+|
T Consensus 101 ~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~L~~~~~--~~m 178 (209)
T cd01911 101 PVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIGKGSQEAKTFLEKRYK--KDL 178 (209)
T ss_pred CHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEeCCCcHHHHHHHHHhcc--cCC
Confidence 9999999999999999999999999999999999965 8999999999999999999999999999999999999 899
Q ss_pred CHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEE
Q psy16847 158 SLEEIVKHGLRALRDTLPNDSELTTKVRYSYVL 190 (208)
Q Consensus 158 s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi 190 (208)
+++||++++.+||+.+.+|| . ++++++|+++
T Consensus 179 s~~ea~~l~~~~l~~~~~~d-~-~~~~~~i~i~ 209 (209)
T cd01911 179 TLEEAIKLALKALKEVLEED-K-KAKNIEIAVV 209 (209)
T ss_pred CHHHHHHHHHHHHHHHHhcc-C-CCCcEEEEEC
Confidence 99999999999999999998 4 9999999875
No 16
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.9e-46 Score=296.05 Aligned_cols=181 Identities=20% Similarity=0.254 Sum_probs=172.0
Q ss_pred CcEEEEEeCCEEEEEEEecCcccc-c--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q psy16847 8 SATVGLKNKTHAVIIALKRAASEL-A--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 84 (208)
Q Consensus 8 ~tvigi~~~dgVVla~d~~~~~~l-~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 84 (208)
+|+|||+++||||||+|+|.+++. . ++.+|||+|++|++|+++|+.+|++.+.+++|.+++.|++.++++++++.++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 589999999999999999999963 3 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCCHHHHHH
Q psy16847 85 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVK 164 (208)
Q Consensus 85 ~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s~~eai~ 164 (208)
+++++++|.+++ .||++++||||||++||+||.+||+|++.+++++|+|++++.++++||+.|+ |+|+.+||++
T Consensus 81 ~~ls~~l~~~~~----~~~~v~~li~G~D~~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~--~~~s~eea~~ 154 (188)
T cd03761 81 KLLSNMLYQYKG----MGLSMGTMICGWDKTGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYR--YDLSVEEAYD 154 (188)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEeCCCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCC--CCCCHHHHHH
Confidence 999999988753 4899999999999889999999999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHhhCCCCcCCCCCcEEEEEEeecee
Q psy16847 165 HGLRALRDTLPNDSELTTKVRYSYVLTVSIH 195 (208)
Q Consensus 165 l~~~al~~~~~~d~~~~~~~i~v~vi~~~~~ 195 (208)
++.++|+.+.+|| ..++++++|++|++++.
T Consensus 155 l~~~~l~~~~~rd-~~sg~~~~v~ii~~~g~ 184 (188)
T cd03761 155 LARRAIYHATHRD-AYSGGNVNLYHVREDGW 184 (188)
T ss_pred HHHHHHHHHHHhc-ccCCCCeEEEEEcCCce
Confidence 9999999999999 48999999999999854
No 17
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.8e-46 Score=300.24 Aligned_cols=186 Identities=33% Similarity=0.513 Sum_probs=175.6
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCccccc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTL 78 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 78 (208)
++|+++|+|+|||+++||||+|+|+|.+.++. ++.+||++|+++++|++||+.+|++.+.+.++.+++.|++.+++++
T Consensus 21 ~~a~~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i 100 (213)
T cd03753 21 IEAIKLGSTAIGIKTKEGVVLAVEKRITSPLMEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQNHRFTYNEPM 100 (213)
T ss_pred HHHHhcCCCEEEEEeCCEEEEEEecccCCcCcCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 47899999999999999999999999987764 5789999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcc-----CCCccceeeEEEEEeCCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCC
Q psy16847 79 PVFRLISIVGNKMQVCTQRY-----DKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLAD 153 (208)
Q Consensus 79 ~~~~la~~l~~~~~~~t~~~-----~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~ 153 (208)
+++.+++.++..+|.|+++. .+|||++++||+|||++||+||.+||+|++.+++++|+|++++.++++|+++|+
T Consensus 101 ~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~gp~Ly~vd~~G~~~~~~~~a~G~~~~~~~~~L~~~~~- 179 (213)
T cd03753 101 TVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDENGPQLFHTDPSGTFTRCDAKAIGSGSEGAQSSLQEKYH- 179 (213)
T ss_pred CHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCCCCEEEEECCCCCeecccEEEECCCcHHHHHHHHhhcc-
Confidence 99999999999999998754 469999999999999989999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEE
Q psy16847 154 FPEASLEEIVKHGLRALRDTLPNDSELTTKVRYSYVL 190 (208)
Q Consensus 154 ~~~~s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi 190 (208)
++|+++||++++++||+.+.+++ ++++++||+++
T Consensus 180 -~~ls~eeai~l~~~~l~~~~~~~--~~~~~~ei~~~ 213 (213)
T cd03753 180 -KDMTLEEAEKLALSILKQVMEEK--LNSTNVELATV 213 (213)
T ss_pred -CCCCHHHHHHHHHHHHHHHhccc--CCCCcEEEEEC
Confidence 89999999999999999998764 79999999985
No 18
>KOG0176|consensus
Probab=100.00 E-value=6.9e-47 Score=291.48 Aligned_cols=189 Identities=34% Similarity=0.495 Sum_probs=178.4
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCccccc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTL 78 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 78 (208)
+||++.|+|.|||+.++||||+.+||++++|+ ...+||++|++||+|++||+.+|++.++++.|.+|++|++.|+++|
T Consensus 28 ieAikLGsTaIGv~TkEgVvL~vEKritSpLm~p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~qnh~f~Y~e~i 107 (241)
T KOG0176|consen 28 IEAIKLGSTAIGVKTKEGVVLAVEKRITSPLMEPSSVEKIVEIDDHIGCAMSGLIADARTLVERARVETQNHWFTYGEPI 107 (241)
T ss_pred HHHHhcCCceeeeeccceEEEEEeccccCcccCchhhhhheehhhceeeeccccccchHHHHHHHHHHhhhceeecCCcc
Confidence 58999999999999999999999999999986 5789999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhh-----ccCCCccceeeEEEEEeCCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCC
Q psy16847 79 PVFRLISIVGNKMQVCTQ-----RYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLAD 153 (208)
Q Consensus 79 ~~~~la~~l~~~~~~~t~-----~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~ 153 (208)
+++.+.+.++++.-+|-. +...|||||++|+||+|+.||+||..||+|++.+|++-|+|+|++-+...|++.|+
T Consensus 108 ~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~gpqL~h~dPSGtf~~~~AKAIGSgsEga~~~L~~e~~- 186 (241)
T KOG0176|consen 108 SVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDETGPQLYHLDPSGTFIRYKAKAIGSGSEGAESSLQEEYH- 186 (241)
T ss_pred cHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCCCceEEEeCCCCceEEecceeccccchHHHHHHHHHHh-
Confidence 999999999998765642 23468999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeec
Q psy16847 154 FPEASLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVS 193 (208)
Q Consensus 154 ~~~~s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~ 193 (208)
++++++||+.+++..|+.+++. +++..|+||.+++++
T Consensus 187 -~~ltL~ea~~~~L~iLkqVMee--Kl~~~Nvev~~vt~e 223 (241)
T KOG0176|consen 187 -KDLTLKEAEKIVLKILKQVMEE--KLNSNNVEVAVVTPE 223 (241)
T ss_pred -hcccHHHHHHHHHHHHHHHHHH--hcCccceEEEEEccc
Confidence 7999999999999999999964 689999999999996
No 19
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=3.8e-45 Score=290.05 Aligned_cols=181 Identities=30% Similarity=0.413 Sum_probs=171.8
Q ss_pred CCcEEEEEeCCEEEEEEEecCccc-cc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q psy16847 7 GSATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRL 83 (208)
Q Consensus 7 G~tvigi~~~dgVVla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 83 (208)
|+|+|||+++||||||+|+|.+.+ +. ++.+|||+|+++++++++|..+|++.+.++++.+++.|++.++++++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 789999999999999999999866 33 578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCCHHHHH
Q psy16847 84 ISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIV 163 (208)
Q Consensus 84 a~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s~~eai 163 (208)
++++++.+|.+ .+|||++++||||||++||+||.+||+|++.+++++|+|++++.++++||+.|+ |+|+++||+
T Consensus 81 a~~l~~~~~~~----~~rP~~v~~ivaG~d~~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~--~~~s~~ea~ 154 (185)
T TIGR03634 81 ATLLSNILNSN----RFFPFIVQLLVGGVDEEGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYR--EDMSVEEAK 154 (185)
T ss_pred HHHHHHHHHhc----CCCCeEEEEEEEEEeCCCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCC--CCCCHHHHH
Confidence 99999998655 569999999999999889999999999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHhhCCCCcCCCCCcEEEEEEeece
Q psy16847 164 KHGLRALRDTLPNDSELTTKVRYSYVLTVSI 194 (208)
Q Consensus 164 ~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~ 194 (208)
+++++||+.+.+|| ..++.+++|++|++++
T Consensus 155 ~l~~~~l~~~~~r~-~~~~~~~~v~ii~~~g 184 (185)
T TIGR03634 155 KLAVRAIKSAIERD-VASGNGIDVAVITKDG 184 (185)
T ss_pred HHHHHHHHHHHHhc-ccCCCCEEEEEEcCCC
Confidence 99999999999999 5899999999999875
No 20
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.2e-45 Score=296.46 Aligned_cols=190 Identities=22% Similarity=0.273 Sum_probs=175.8
Q ss_pred ccccCCcEEEEEeCCEEEEEEEecCccccc---ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q psy16847 3 AVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLP 79 (208)
Q Consensus 3 av~~G~tvigi~~~dgVVla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 79 (208)
.+++|+|+|||+++||||||+|++.++++. ++.+|||+|++|++|++||+.+|++.+.++++.+++.|++.++++++
T Consensus 4 ~~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~ 83 (212)
T cd03757 4 YTDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMS 83 (212)
T ss_pred ccCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCC
Confidence 367899999999999999999999999963 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCC-CcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhC------
Q psy16847 80 VFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-GPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLA------ 152 (208)
Q Consensus 80 ~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~-g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~------ 152 (208)
++.+++++++.+ |++|. |||++++||||||++ +|+||.+||+|++.+++++|+|+|+..++++||+.|+
T Consensus 84 ~~~la~~ls~~l--y~~R~--~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ 159 (212)
T cd03757 84 TEAIAQLLSTIL--YSRRF--FPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNN 159 (212)
T ss_pred HHHHHHHHHHHH--HhhcC--CCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCc
Confidence 999999999988 55553 799999999999964 5999999999999999999999999999999999985
Q ss_pred -CCCCCCHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeeceeec
Q psy16847 153 -DFPEASLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVSIHST 197 (208)
Q Consensus 153 -~~~~~s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~~~~ 197 (208)
..++|+++||++++++||+.+.+|| ..++++++|++|++++...
T Consensus 160 ~~~~~ms~eea~~l~~~~l~~~~~rd-~~sg~~i~i~iit~~g~~~ 204 (212)
T cd03757 160 VERTPLSLEEAVSLVKDAFTSAAERD-IYTGDSLEIVIITKDGIEE 204 (212)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhC-cccCCCEEEEEEcCCCEEE
Confidence 1279999999999999999999999 5899999999999995443
No 21
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.6e-44 Score=286.27 Aligned_cols=185 Identities=22% Similarity=0.247 Sum_probs=172.7
Q ss_pred CcEEEEEeCCEEEEEEEecCcccc-c--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q psy16847 8 SATVGLKNKTHAVIIALKRAASEL-A--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 84 (208)
Q Consensus 8 ~tvigi~~~dgVVla~d~~~~~~l-~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 84 (208)
+|+|||+++||||||+|+|.+++. . ++.+|||+|+++++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 589999999999999999999974 2 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCCHHHHHH
Q psy16847 85 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVK 164 (208)
Q Consensus 85 ~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s~~eai~ 164 (208)
+++++.++.|. .||++++||||||++||+||.+||.|++.+++++|+|+++..++++||++|+ |+|+++||++
T Consensus 81 ~~l~~~l~~~~-----~p~~v~~ivaG~d~~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~--~~ls~~ea~~ 153 (189)
T cd03763 81 TMLKQHLFRYQ-----GHIGAALVLGGVDYTGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYK--PDMTEEEAKK 153 (189)
T ss_pred HHHHHHHHHcC-----CccceeEEEEeEcCCCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcC--CCCCHHHHHH
Confidence 99999886552 3999999999999888999999999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHhhCCCCcCCCCCcEEEEEEeec-eeecCCC
Q psy16847 165 HGLRALRDTLPNDSELTTKVRYSYVLTVS-IHSTSTY 200 (208)
Q Consensus 165 l~~~al~~~~~~d~~~~~~~i~v~vi~~~-~~~~~~~ 200 (208)
++.+||+.+.+|| ..++.+++|++|+++ +...-||
T Consensus 154 l~~~~l~~~~~rd-~~~~~~~~v~ii~~~g~~~~~~~ 189 (189)
T cd03763 154 LVCEAIEAGIFND-LGSGSNVDLCVITKDGVEYLRNY 189 (189)
T ss_pred HHHHHHHHHHHhc-CcCCCceEEEEEcCCcEEEecCC
Confidence 9999999999999 489999999999998 5555444
No 22
>KOG0183|consensus
Probab=100.00 E-value=1.7e-45 Score=286.85 Aligned_cols=190 Identities=35% Similarity=0.512 Sum_probs=180.4
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCccccc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTL 78 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 78 (208)
+||+++|+|+||++++|+|||+.+++...+|. +...||..+|+|++++|+|+.+|++.++++.|.+|+.|+++.+.|+
T Consensus 24 qEAvrkGstaVgvrg~~~vvlgvEkkSv~~Lq~~r~~rkI~~ld~hV~mafaGl~aDArilinrArvecqShrlt~edpv 103 (249)
T KOG0183|consen 24 QEAVRKGSTAVGVRGNNCVVLGVEKKSVPKLQDERTVRKISMLDDHVVMAFAGLTADARILINRARVECQSHRLTLEDPV 103 (249)
T ss_pred HHHHhcCceEEEeccCceEEEEEeecchhhhhhhhhhhhheeecceeeEEecCCCccceeehhhHhHhhhhhhcccCCCc
Confidence 48999999999999999999999999999986 5789999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCCC-cEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCC
Q psy16847 79 PVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAG-PHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA 157 (208)
Q Consensus 79 ~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g-~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~ 157 (208)
+++.++++|+.+.|.|||..|.||||++.||+|||.+| |+||++||+|.+.+|++.|+|.+++.+..+||++|++.+-.
T Consensus 104 tveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~aiGr~sk~VrEflEK~y~e~~~~ 183 (249)
T KOG0183|consen 104 TVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKANAIGRSSKTVREFLEKNYKEEAIA 183 (249)
T ss_pred HHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhccccccccHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999887 99999999999999999999999999999999999964457
Q ss_pred CHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeece
Q psy16847 158 SLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVSI 194 (208)
Q Consensus 158 s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~ 194 (208)
+..++++|++++|.++.. ..+.|+|++|++.+.
T Consensus 184 ~~~~~ikL~ir~LleVvq----s~~~nie~aVm~~~~ 216 (249)
T KOG0183|consen 184 TEGETIKLAIRALLEVVQ----SGGKNIEVAVMKRRK 216 (249)
T ss_pred ccccHHHHHHHHHHHHhh----cCCCeeEEEEEecCC
Confidence 889999999999999983 577999999999874
No 23
>KOG0181|consensus
Probab=100.00 E-value=2.2e-45 Score=282.59 Aligned_cols=189 Identities=31% Similarity=0.506 Sum_probs=182.2
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCccccc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTL 78 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 78 (208)
+.|+.+|.|.|||+-.||||||++|+..+.|. ...+|++.|.+||+|.+||+.+|++.++++.|+.++.|...|+++|
T Consensus 26 L~Av~~G~~SvGi~A~nGvVlatekk~~s~L~~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Yy~vY~e~~ 105 (233)
T KOG0181|consen 26 LTAVVNGQTSVGIKAANGVVLATEKKDVSPLVDEESVRKVEKITPHIGCVYSGMGPDYRVLVHKSRKIAEQYYRVYGEPI 105 (233)
T ss_pred HHHHhCCCCceeeeecCceEEEeccCCCCccchhhhhhhHhhccCCcceEEecCCCceeehhhHHHHHHHHHHHHhcCCC
Confidence 36899999999999999999999999999986 4679999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCC
Q psy16847 79 PVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEAS 158 (208)
Q Consensus 79 ~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s 158 (208)
|+..+...++..+|+|||.+|.||||+++++||||+++|.||++||+|++..|+++|+|.+...+++|||++|. +++.
T Consensus 106 pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~~p~LyQvdPSGsyf~wkatA~Gkn~v~aktFlEkR~~--edle 183 (233)
T KOG0181|consen 106 PTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEGGPLLYQVDPSGSYFAWKATAMGKNYVNAKTFLEKRYN--EDLE 183 (233)
T ss_pred CHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCCCceeEEEECCccceeehhhhhhccCcchHHHHHHHHhc--cccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 7999
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeec
Q psy16847 159 LEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVS 193 (208)
Q Consensus 159 ~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~ 193 (208)
+++++..|+.+|++.++- .++.+||||.|+..+
T Consensus 184 ldd~ihtailtlkE~feg--e~~~~nieigv~~~~ 216 (233)
T KOG0181|consen 184 LDDAIHTAILTLKESFEG--EMTAKNIEIGVCGEN 216 (233)
T ss_pred cchHHHHHHHHHHHHhcc--ccccCceEEEEecCC
Confidence 999999999999999976 489999999999977
No 24
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.8e-44 Score=282.68 Aligned_cols=180 Identities=29% Similarity=0.403 Sum_probs=170.8
Q ss_pred CcEEEEEeCCEEEEEEEecCcccc-c--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q psy16847 8 SATVGLKNKTHAVIIALKRAASEL-A--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 84 (208)
Q Consensus 8 ~tvigi~~~dgVVla~d~~~~~~l-~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 84 (208)
+|+|||+++||||||+|+|.+++. . ++.+||++|+++++++++|+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 589999999999999999999863 3 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCCHHHHHH
Q psy16847 85 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVK 164 (208)
Q Consensus 85 ~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s~~eai~ 164 (208)
+++++.+|.+ .+|||++++||||||++||+||.+||+|++.+++++|+|++++.++++||+.|+ ++|+++||++
T Consensus 81 ~~i~~~~~~~----~~~P~~~~~lvaG~d~~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~--~~~~~~ea~~ 154 (188)
T cd03764 81 TLLSNILNSS----KYFPYIVQLLIGGVDEEGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYK--EDMTVEEAKK 154 (188)
T ss_pred HHHHHHHHhc----CCCCcEEEEEEEEEeCCCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCC--CCCCHHHHHH
Confidence 9999999654 468999999999999878999999999999999999999999999999999998 8999999999
Q ss_pred HHHHHHHhhCCCCcCCCCCcEEEEEEeece
Q psy16847 165 HGLRALRDTLPNDSELTTKVRYSYVLTVSI 194 (208)
Q Consensus 165 l~~~al~~~~~~d~~~~~~~i~v~vi~~~~ 194 (208)
++++||+.+.+|| ..++++++|+++++++
T Consensus 155 l~~~~l~~~~~rd-~~~~~~i~i~iv~~~g 183 (188)
T cd03764 155 LAIRAIKSAIERD-SASGDGIDVVVITKDG 183 (188)
T ss_pred HHHHHHHHHHhhc-CCCCCcEEEEEECCCC
Confidence 9999999999999 5899999999999885
No 25
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8e-44 Score=291.19 Aligned_cols=186 Identities=16% Similarity=0.251 Sum_probs=169.7
Q ss_pred CcEEEEEeCCEEEEEEEecCccccc--ccccceEEEc----CceeEeecccHHHHHHHHHHHHHHHHHHHHHcCC-CCCH
Q psy16847 8 SATVGLKNKTHAVIIALKRAASELA--AHQKKIIVID----DHMGLSFAGLTADARILARFMRMECLNYKYAHKD-TLPV 80 (208)
Q Consensus 8 ~tvigi~~~dgVVla~d~~~~~~l~--~~~~Ki~~i~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-~i~~ 80 (208)
+-+|||+++||||||+|+|.++++. .+.+|||+|+ +|++|+.||+.+|++.+++++|.+++.|++.+|+ ++++
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v 80 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAGVDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTM 80 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCCCccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCH
Confidence 3589999999999999999999864 4789999998 8999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHH-HhhccC-----CCccceeeEEEEEe-CCCcEEEEECCCCceeece----EEeeCCCcHHHHHHHHH
Q psy16847 81 FRLISIVGNKMQV-CTQRYD-----KRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVK----AMAIGSRSQSARTYLEK 149 (208)
Q Consensus 81 ~~la~~l~~~~~~-~t~~~~-----~rP~~v~~ll~G~d-~~g~~ly~vd~~G~~~~~~----~~a~G~~~~~~~~~Le~ 149 (208)
+.+|+++++.+++ ++|..+ .|||++++||+||| +.||+||++||+|++.+++ ++|+|. ++.++++||+
T Consensus 81 ~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Lek 159 (236)
T cd03765 81 FDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILDR 159 (236)
T ss_pred HHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHHH
Confidence 9999999998544 555554 48999999999999 5689999999999999994 589996 7999999999
Q ss_pred hhCCCCCCCHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeeceeec
Q psy16847 150 RLADFPEASLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVSIHST 197 (208)
Q Consensus 150 ~~~~~~~~s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~~~~ 197 (208)
+|+ ++|++|||++++++||+.+++|| ..++++|+|++|++++...
T Consensus 160 ~yk--~~ms~eeai~la~~al~~a~~rd-~~sg~~iev~vI~k~G~~~ 204 (236)
T cd03765 160 VIT--PDTSLEDAAKCALVSMDSTMRSN-LSVGPPLDLLVYERDSLQV 204 (236)
T ss_pred hcC--CCCCHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEECCCeee
Confidence 999 79999999999999999999999 5899999999999995544
No 26
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=3.6e-44 Score=295.85 Aligned_cols=182 Identities=20% Similarity=0.259 Sum_probs=170.5
Q ss_pred cccCCcEEEEEeCCEEEEEEEecCccc-cc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Q psy16847 4 VKQGSATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPV 80 (208)
Q Consensus 4 v~~G~tvigi~~~dgVVla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 80 (208)
+++|+|+|||+++||||||+|+|.+.+ +. ++.+|||+|++|++++++|+.+|++.+.+++|.+++.|++.++++|++
T Consensus 36 ~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~isv 115 (247)
T PTZ00488 36 FAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELISV 115 (247)
T ss_pred cCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 468999999999999999999999875 43 578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCcccee--eEEEEEeCCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCC
Q psy16847 81 FRLISIVGNKMQVCTQRYDKRPYGVG--LLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEAS 158 (208)
Q Consensus 81 ~~la~~l~~~~~~~t~~~~~rP~~v~--~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s 158 (208)
+.+|++|+++++.+ |||++. +||||||++||+||.+||+|++.+++++|+|+|+..++++||+.|+ ++|+
T Consensus 116 ~~la~~ls~~l~~~------R~~~~~v~~iiaG~D~~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k--~dms 187 (247)
T PTZ00488 116 AAASKILANIVWNY------KGMGLSMGTMICGWDKKGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFK--WDLN 187 (247)
T ss_pred HHHHHHHHHHHHhc------CCCCeeEEEEEEEEeCCCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCc--CCCC
Confidence 99999999998644 566654 8999999889999999999999999999999999999999999999 7999
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeece
Q psy16847 159 LEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVSI 194 (208)
Q Consensus 159 ~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~ 194 (208)
.+||++++++||+.+.+|| ..++++++|++|+++.
T Consensus 188 ~eEai~l~~kal~~~~~Rd-~~sg~~~ei~iI~k~g 222 (247)
T PTZ00488 188 DEEAQDLGRRAIYHATFRD-AYSGGAINLYHMQKDG 222 (247)
T ss_pred HHHHHHHHHHHHHHHHHhc-cccCCCeEEEEEcCCc
Confidence 9999999999999999999 5899999999999884
No 27
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=9e-44 Score=282.59 Aligned_cols=184 Identities=37% Similarity=0.569 Sum_probs=174.8
Q ss_pred cccCCcEEEEEeCCEEEEEEEecCccc--cc-cc-ccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q psy16847 4 VKQGSATVGLKNKTHAVIIALKRAASE--LA-AH-QKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLP 79 (208)
Q Consensus 4 v~~G~tvigi~~~dgVVla~d~~~~~~--l~-~~-~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 79 (208)
|++|+|+|||+++||||||+|+|.+.+ +. +. .+|||+|++|+++++||..+|++.+.++++.++..|++.++.+++
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 80 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS 80 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence 579999999999999999999999955 42 34 699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCCC-cEEEEECCCCceeec-eEEeeCCCcHHHHHHHHHhhCCCCCC
Q psy16847 80 VFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAG-PHIYQTCPSSNYYDV-KAMAIGSRSQSARTYLEKRLADFPEA 157 (208)
Q Consensus 80 ~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g-~~ly~vd~~G~~~~~-~~~a~G~~~~~~~~~Le~~~~~~~~~ 157 (208)
++.+++.+++.++.++++.++||+++++++||||+++ |+||.+||+|++.++ .++|+|+|++.++++||+.|+ ++|
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~--~~~ 158 (190)
T PF00227_consen 81 PEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYK--PDL 158 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHT--TTS
T ss_pred chhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhcc--CCC
Confidence 9999999999999999998899999999999999766 999999999999999 699999999999999999998 899
Q ss_pred CHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEE
Q psy16847 158 SLEEIVKHGLRALRDTLPNDSELTTKVRYSYVL 190 (208)
Q Consensus 158 s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi 190 (208)
+++||+++++++|+.+.+|| ..++++++|+||
T Consensus 159 ~~~ea~~~~~~~l~~~~~~d-~~~~~~~~v~vi 190 (190)
T PF00227_consen 159 SLEEAIELALKALKEAIDRD-ILSGDNIEVAVI 190 (190)
T ss_dssp SHHHHHHHHHHHHHHHHHHB-TTSTSEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhhC-CccCCeEEEEEC
Confidence 99999999999999999998 589999999987
No 28
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.4e-43 Score=280.46 Aligned_cols=180 Identities=19% Similarity=0.182 Sum_probs=169.7
Q ss_pred CcEEEEEeCCEEEEEEEecCcccc-c--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q psy16847 8 SATVGLKNKTHAVIIALKRAASEL-A--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 84 (208)
Q Consensus 8 ~tvigi~~~dgVVla~d~~~~~~l-~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 84 (208)
+|+|||+++||||||+|+|.+++. . ++.+|||+|++|++|+++|+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 589999999999999999999973 2 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCccceeeEEEEEeC-CCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCCHHHHH
Q psy16847 85 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIV 163 (208)
Q Consensus 85 ~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~-~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s~~eai 163 (208)
+.+++.++.++ |||++++||||||+ +||+||.+||.|++.+++++++|++++.++++||+.|+ |+|+++||+
T Consensus 81 ~~l~~~~~~~~-----~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~--~~~s~~ea~ 153 (188)
T cd03762 81 SLFKNLCYNYK-----EMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYK--PGMTLEECI 153 (188)
T ss_pred HHHHHHHHhcc-----ccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCC--CCCCHHHHH
Confidence 99999986553 79999999999995 68999999999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHhhCCCCcCCCCCcEEEEEEeecee
Q psy16847 164 KHGLRALRDTLPNDSELTTKVRYSYVLTVSIH 195 (208)
Q Consensus 164 ~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~~ 195 (208)
+++++||+.+.+|| ..++++++|++|+++..
T Consensus 154 ~l~~~al~~~~~rd-~~~~~~~~i~~i~~~g~ 184 (188)
T cd03762 154 KFVKNALSLAMSRD-GSSGGVIRLVIITKDGV 184 (188)
T ss_pred HHHHHHHHHHHHhc-cccCCCEEEEEECCCCE
Confidence 99999999999999 58999999999999844
No 29
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=2.3e-43 Score=287.91 Aligned_cols=184 Identities=18% Similarity=0.186 Sum_probs=167.9
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCcccccccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcC-CCCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHK-DTLP 79 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~i~ 79 (208)
+||+++|+|+|||+++||||||+|++. +..+|||+|+||++|+++|+.+|++.++++++.+++.|++.++ .+++
T Consensus 21 ~kav~~g~T~VGIk~kdgVVLaaek~~-----~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~~~~~ 95 (228)
T TIGR03691 21 RKGIARGRSVVVLTYADGILFVAENPS-----RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYDRRDVT 95 (228)
T ss_pred HHHHHcCCcEEEEEeCCeEEEEEecCC-----CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCcc
Confidence 479999999999999999999999973 4678999999999999999999999999999999999999998 6899
Q ss_pred HHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeC--CCcEEEEECCCCceeece-EEeeCCCcHHHHHHHHHhhCCCCC
Q psy16847 80 VFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD--AGPHIYQTCPSSNYYDVK-AMAIGSRSQSARTYLEKRLADFPE 156 (208)
Q Consensus 80 ~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~--~g~~ly~vd~~G~~~~~~-~~a~G~~~~~~~~~Le~~~~~~~~ 156 (208)
++.+|+.+++.++.++ +++.|||+|++|++|||+ .||+||++||+|++.+++ ++|+|++++.++++||++|+ ++
T Consensus 96 v~~la~~~tq~~~~~~-~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~y~--~~ 172 (228)
T TIGR03691 96 GRGLANAYAQTLGTIF-TEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKESYR--DG 172 (228)
T ss_pred HHHHHHHHHhhccccc-ccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHHhcC--CC
Confidence 9999987777766555 456799999999999984 689999999999999976 89999999999999999999 79
Q ss_pred CCHHHHHHHHHHHHHhhC--CCCcCCCCCcEEEEEEeec
Q psy16847 157 ASLEEIVKHGLRALRDTL--PNDSELTTKVRYSYVLTVS 193 (208)
Q Consensus 157 ~s~~eai~l~~~al~~~~--~~d~~~~~~~i~v~vi~~~ 193 (208)
|+++||+++++++|+.+. +|| .+++.++||++++++
T Consensus 173 ms~eeai~la~~aL~~~~~~~r~-~~~~~~iEv~ii~k~ 210 (228)
T TIGR03691 173 LSLADALGLAVQALRAGGNGEKR-ELDAASLEVAVLDRS 210 (228)
T ss_pred CCHHHHHHHHHHHHHHHhccccc-cCCccceEEEEEeCC
Confidence 999999999999999995 465 489999999999965
No 30
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=3.1e-43 Score=286.08 Aligned_cols=185 Identities=21% Similarity=0.224 Sum_probs=169.5
Q ss_pred cCCcEEEEEeCCEEEEEEEecCccc-cc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Q psy16847 6 QGSATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFR 82 (208)
Q Consensus 6 ~G~tvigi~~~dgVVla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~ 82 (208)
+|+|+|||+++||||||+|+|.+++ +. ++.+|||+|++|++|+++|+.+|++.+.+++|.+++.|++.++++++++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 5899999999999999999999985 43 57899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCccceeeEEEEEeC--CCcEEEEECCCC-ceeeceEEeeCCCcHHHHHHHHHhhCCCCCCCH
Q psy16847 83 LISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD--AGPHIYQTCPSS-NYYDVKAMAIGSRSQSARTYLEKRLADFPEASL 159 (208)
Q Consensus 83 la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~--~g~~ly~vd~~G-~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s~ 159 (208)
+++.|++++|.++. +.+|||++++||||||+ .+|+||++||+| ++..++++|+|+|++.++++||++|+ ++|+.
T Consensus 81 la~~ls~~~~~~~~-~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~--~~ms~ 157 (219)
T TIGR03690 81 KANRLAAMVRGNLP-AAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYS--PDLDE 157 (219)
T ss_pred HHHHHHHHHHhhhh-hccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCC--CCcCH
Confidence 99999999988774 45899999999999995 469999999999 57777999999999999999999999 89999
Q ss_pred HHHHHHHHHHHHhhCCCCcCCCCCc-------EEEEEEeece
Q psy16847 160 EEIVKHGLRALRDTLPNDSELTTKV-------RYSYVLTVSI 194 (208)
Q Consensus 160 ~eai~l~~~al~~~~~~d~~~~~~~-------i~v~vi~~~~ 194 (208)
+||++++++||+.+.+||. .+++. ++|++|+++.
T Consensus 158 eeai~l~~~al~~~~~~d~-~s~~~~~~~~~~~ei~ii~~~g 198 (219)
T TIGR03690 158 DDALRVAVEALYDAADDDS-ATGGPDLVRGIYPTVVVITADG 198 (219)
T ss_pred HHHHHHHHHHHHHHHhccc-ccCCcccccccccEEEEEccCc
Confidence 9999999999999999984 45553 3999998763
No 31
>KOG0863|consensus
Probab=100.00 E-value=6.4e-44 Score=280.76 Aligned_cols=193 Identities=61% Similarity=0.987 Sum_probs=189.3
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCcccccccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPV 80 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 80 (208)
|||++.|++.||++.++..||++-+|..+.|...++|||+||+|++++++|+.+|++.+.++++.+|..+++.+++++++
T Consensus 26 ~EavkqGsatVGLks~thaVLvAl~r~~seLss~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~~~~~~~~r~~pv 105 (264)
T KOG0863|consen 26 MEAVKQGSATVGLKSRTHAVLVALKRAQSELSSHQKKIFKIDDHIGISIAGLTADARVLSRYLRQECLNSRFIYGRPLPV 105 (264)
T ss_pred HHHHhcccceEeecccceEEEeeeccchhHHHHhhheeEecccccceEEeccCcchHHHHHHHHHHHhhhhhccCCcccH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCCHH
Q psy16847 81 FRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLE 160 (208)
Q Consensus 81 ~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s~~ 160 (208)
..+...|++.+|..||+.++|||||.++++|+|+.|||||+++|+|++.++++.++|+.||.+.++||++..+|++++.|
T Consensus 106 ~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G~hl~e~~Psg~v~e~~g~sIGsRSQsARTyLEr~~e~f~~~~~e 185 (264)
T KOG0863|consen 106 LRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESGPHLYEFCPSGNVFECKGMSIGSRSQSARTYLERNLEEFEDSSPE 185 (264)
T ss_pred HHHHHHHHHHHhhhhhhhCCccccceEEEEeecCCCceeEEEcCCccEEEEeeeecccchhhHHHHHHHHHHHHhcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeec
Q psy16847 161 EIVKHGLRALRDTLPNDSELTTKVRYSYVLTVS 193 (208)
Q Consensus 161 eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~ 193 (208)
|+|+.++.||+...+.|..+++.|++|+|+.+|
T Consensus 186 ELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd 218 (264)
T KOG0863|consen 186 ELIKHGIMALRETLPEDEDLTGENVSIAIVGKD 218 (264)
T ss_pred HHHHHHHHHHHhhcCcccccccceeEEEEEeCC
Confidence 999999999999999887899999999999998
No 32
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.9e-43 Score=277.10 Aligned_cols=182 Identities=27% Similarity=0.339 Sum_probs=172.1
Q ss_pred CcEEEEEeCCEEEEEEEecCccccc---ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q psy16847 8 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 84 (208)
Q Consensus 8 ~tvigi~~~dgVVla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 84 (208)
+|+|||+++||||||+|+|.++++. +..+|||+|+++++++++|+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 5899999999999999999999963 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCccceeeEEEEEeC-CCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCCHHHHH
Q psy16847 85 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIV 163 (208)
Q Consensus 85 ~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~-~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s~~eai 163 (208)
+++++.++.+++ |||++++||||+|+ ++|+||.+||.|++.+++++|+|++++.++++||+.|+ |+|+++||+
T Consensus 81 ~~l~~~~~~~~~----~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~--~~~s~~ea~ 154 (189)
T cd01912 81 NLLSNILYSYRG----FPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYK--PDMTLEEAV 154 (189)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccC--CCCCHHHHH
Confidence 999999966653 79999999999997 67999999999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHhhCCCCcCCCCCcEEEEEEeeceee
Q psy16847 164 KHGLRALRDTLPNDSELTTKVRYSYVLTVSIHS 196 (208)
Q Consensus 164 ~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~~~ 196 (208)
+++.+||+.+.+|| ..++.+++|++|++++..
T Consensus 155 ~~~~~~l~~~~~~d-~~~~~~~~v~vi~~~g~~ 186 (189)
T cd01912 155 ELVKKAIDSAIERD-LSSGGGVDVAVITKDGVE 186 (189)
T ss_pred HHHHHHHHHHHHhc-CccCCcEEEEEECCCCEE
Confidence 99999999999999 589999999999998544
No 33
>KOG0178|consensus
Probab=100.00 E-value=1e-42 Score=270.68 Aligned_cols=191 Identities=31% Similarity=0.478 Sum_probs=182.1
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCccccc---ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDT 77 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 77 (208)
|||+.+.+|+|||-.+|||||+++++.+++|. ...+||++|+|+|+|+.+|+.+|+..|++.+|..+++|.+.||++
T Consensus 25 meais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~~y~e~ 104 (249)
T KOG0178|consen 25 MEAISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYARIIAQRYLFRYGEE 104 (249)
T ss_pred HHHHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccccHHHHHHHHHHHHHHHHHHhCCC
Confidence 58899999999999999999999999999975 368999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeC-CCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCC
Q psy16847 78 LPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 156 (208)
Q Consensus 78 i~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~-~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~ 156 (208)
||.+.|++++++..|.|||++|.||||||+|.+|||+ .|.+||+-||+|++-.|++.|+|.+++.++..|...|++ ..
T Consensus 105 iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka~ciG~N~~Aa~s~Lkqdykd-d~ 183 (249)
T KOG0178|consen 105 IPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKATCIGANSGAAQSMLKQDYKD-DE 183 (249)
T ss_pred CcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccceeeeccchHHHHHHHHhhhcc-cc
Confidence 9999999999999999999999999999999999996 579999999999999999999999999999999999985 34
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeec
Q psy16847 157 ASLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVS 193 (208)
Q Consensus 157 ~s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~ 193 (208)
++++||+++|++.|....+.+ .++.+.+|++.++++
T Consensus 184 ~~~~eA~~laikvL~kt~d~~-~lt~eklEia~~~k~ 219 (249)
T KOG0178|consen 184 NDLEEAKALAIKVLSKTLDSG-SLTAEKLEIATITKD 219 (249)
T ss_pred ccHHHHHHHHHHHHHhhcccC-CCChhheEEEEEEec
Confidence 679999999999999999887 589999999999998
No 34
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=1.2e-41 Score=268.57 Aligned_cols=178 Identities=40% Similarity=0.569 Sum_probs=169.7
Q ss_pred CcEEEEEeCCEEEEEEEecCccccc---ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q psy16847 8 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 84 (208)
Q Consensus 8 ~tvigi~~~dgVVla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 84 (208)
+|+|||+++||||||+|++.++++. ++.+|||.|+++++++++|..+|++.+.+.++.++..|++.++++++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 5899999999999999999999863 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCccceeeEEEEEeC-CCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCCHHHHH
Q psy16847 85 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIV 163 (208)
Q Consensus 85 ~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~-~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s~~eai 163 (208)
+.+++.+|.+++. +|||++++|++|+|+ .+|+||.+||+|++.+++++|+|++++.++++||+.|+ ++|+++||+
T Consensus 81 ~~l~~~~~~~~~~--~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~--~~~s~~ea~ 156 (182)
T cd01906 81 KLLANLLYEYTQS--LRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYK--PDMTLEEAI 156 (182)
T ss_pred HHHHHHHHHhCCC--ccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHcc--CCCCHHHHH
Confidence 9999999988875 799999999999996 68999999999999999999999999999999999999 799999999
Q ss_pred HHHHHHHHhhCCCCcCCCCCcEEEEEE
Q psy16847 164 KHGLRALRDTLPNDSELTTKVRYSYVL 190 (208)
Q Consensus 164 ~l~~~al~~~~~~d~~~~~~~i~v~vi 190 (208)
+++.+||+.+.++| ..++.+++|++|
T Consensus 157 ~l~~~~l~~~~~~~-~~~~~~~~i~ii 182 (182)
T cd01906 157 ELALKALKSALERD-LYSGGNIEVAVI 182 (182)
T ss_pred HHHHHHHHHHHccc-CCCCCCEEEEEC
Confidence 99999999999998 479999999875
No 35
>KOG0184|consensus
Probab=100.00 E-value=1.9e-42 Score=271.11 Aligned_cols=190 Identities=27% Similarity=0.394 Sum_probs=178.0
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCccccc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTL 78 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 78 (208)
+||+++|+|+|||+|+||||++++|.++++|. +..+|||.|++|++|+.+|+.+|.+.+..++|.|+.+|+..|+.|+
T Consensus 28 ~KAven~~T~IGIk~kdGVVl~vEKli~SkLy~p~sn~ri~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~~~y~~pi 107 (254)
T KOG0184|consen 28 QKAVENSGTCIGIKCKDGVVLAVEKLITSKLYEPGSNERIFSVDRHIGMAVAGLIPDGRHLVNRARDEAASWRKNYGDPI 107 (254)
T ss_pred HHHHhcCCcEEEEecCCeEEEEEeeeecccccccCCCCceEeecccccEEEeccccchHHHHHHHHHHHHHHHHhcCCCC
Confidence 47999999999999999999999999999986 5789999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCC
Q psy16847 79 PVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEAS 158 (208)
Q Consensus 79 ~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s 158 (208)
|...++.+++++.|.||.++..||||++.++++||++||+||.+||+|....|+++|+|.+.|.+++.||+. ++.+|+
T Consensus 108 P~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~~g~~LymiepSG~~~~Y~~aaiGKgrq~aKtElEKL--~~~~mt 185 (254)
T KOG0184|consen 108 PGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDDEGPQLYMIEPSGSSYGYKGAAIGKGRQAAKTELEKL--KIDEMT 185 (254)
T ss_pred chHHHHHHHHhhhheeehhhccccccceEEEEEEeCCCceEEEEcCCCCccceeeeeccchhHHHHHHHHhc--cccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 346899
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeec
Q psy16847 159 LEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVS 193 (208)
Q Consensus 159 ~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~ 193 (208)
.+|+++.+.+.++.+.+.. +-....||+.++..+
T Consensus 186 ~~e~VkeaakIiY~~HDe~-KdK~feiEm~wvg~e 219 (254)
T KOG0184|consen 186 CKELVKEAAKIIYKVHDEN-KDKEFEIEMGWVGEE 219 (254)
T ss_pred HHHHHHHHHheeEeecccc-cCcceEEEEEEEEee
Confidence 9999999999999998433 345667888888776
No 36
>KOG0182|consensus
Probab=100.00 E-value=1.1e-40 Score=259.52 Aligned_cols=192 Identities=30% Similarity=0.467 Sum_probs=182.8
Q ss_pred Cccccc-CCcEEEEEeCCEEEEEEEecCccccc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy16847 1 MEAVKQ-GSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDT 77 (208)
Q Consensus 1 ~~av~~-G~tvigi~~~dgVVla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 77 (208)
+||+|+ |.|+||++++|++|++++|+.+.+|. +....+|+|+++|+|+++|+++|++..+.++|.++.++++.||.+
T Consensus 29 fkAin~~gltsVavrgkDcavvvsqKkvpDKLld~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~eAa~~~yk~Gye 108 (246)
T KOG0182|consen 29 FKAINQAGLTSVAVRGKDCAVVVTQKKVPDKLLDSSTVTHLFRITKKIGCVITGMIADARSQVQRARYEAAEFRYKYGYE 108 (246)
T ss_pred HHHhhcCCCceEEEcCCceEEEEecccCcccccccccceeEEEeeccceEEEecCCcchHHHHHHHHHHHHhhhhhcCCC
Confidence 479998 88999999999999999999999986 467999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeC-CCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCC
Q psy16847 78 LPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 156 (208)
Q Consensus 78 i~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~-~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~ 156 (208)
||++.||+++++..|.|||+..|||+||.+++.|+|+ .||.+|.+||.|.+..++++|.|.....+..+||++|++..+
T Consensus 109 mp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~kAtaaG~Kq~e~tsfLEKk~Kk~~~ 188 (246)
T KOG0182|consen 109 MPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFKATAAGVKQQEATSFLEKKYKKDID 188 (246)
T ss_pred CCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCccccccceeeecccchhhHHHHHHHhhccCcc
Confidence 9999999999999999999999999999999999995 689999999999999999999999999999999999996556
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeece
Q psy16847 157 ASLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVSI 194 (208)
Q Consensus 157 ~s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~ 194 (208)
.+.+|++++++.+|..++..| +...++||.|++.+.
T Consensus 189 ~t~~e~ve~ai~al~~sl~~D--fk~se~EVgvv~~~~ 224 (246)
T KOG0182|consen 189 LTFEETVETAISALQSSLGID--FKSSELEVGVVTVDN 224 (246)
T ss_pred chHHHHHHHHHHHHHHHHhcc--cCCcceEEEEEEcCC
Confidence 789999999999999999887 689999999999873
No 37
>KOG0179|consensus
Probab=100.00 E-value=2.1e-38 Score=246.41 Aligned_cols=195 Identities=22% Similarity=0.322 Sum_probs=181.4
Q ss_pred cccCCcEEEEEeCCEEEEEEEecCcccc---cccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Q psy16847 4 VKQGSATVGLKNKTHAVIIALKRAASEL---AAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPV 80 (208)
Q Consensus 4 v~~G~tvigi~~~dgVVla~d~~~~~~l---~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 80 (208)
..||+|+|||++.|+.|+|+|+|.+++. .+.+.|||+++|+++++.||+++|+..|...++.....|++.+...|++
T Consensus 26 ~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~ 105 (235)
T KOG0179|consen 26 EDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKMSI 105 (235)
T ss_pred ccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccccH
Confidence 5799999999999999999999999985 3789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCCC-cEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCC------
Q psy16847 81 FRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAG-PHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLAD------ 153 (208)
Q Consensus 81 ~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g-~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~------ 153 (208)
..+|++|+..+ |.+|+ .||++..+|+|+|++| +.+|++||.|++.+..+.|.|+++.+++++|+.....
T Consensus 106 ~s~A~lls~~L--Y~kRF--FPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~~~e 181 (235)
T KOG0179|consen 106 HSAAQLLSTIL--YSKRF--FPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQNLE 181 (235)
T ss_pred HHHHHHHHHHH--hhccc--ccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCcCcccc
Confidence 99999999999 77765 6999999999999877 9999999999999999999999999999999986431
Q ss_pred ---CCCCCHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeeceeecCCCCce
Q psy16847 154 ---FPEASLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVSIHSTSTYPNV 203 (208)
Q Consensus 154 ---~~~~s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~~~~~~~~~~ 203 (208)
.+.+++|+|++|+.++|..+.+|| ..++++++|+|+++|++....+|+.
T Consensus 182 ~~~~~~Ls~e~ai~lv~d~F~SAaERd-I~tGD~l~i~I~tk~gV~~e~~~Lr 233 (235)
T KOG0179|consen 182 NAERTPLSLERAIRLVKDAFTSAAERD-IYTGDKLEICIITKDGVEVETLPLR 233 (235)
T ss_pred cCcccccCHHHHHHHHHHHhhhhhhcc-cccCCcEEEEEEecCCEEEEeeecc
Confidence 245799999999999999999999 4899999999999999988888864
No 38
>KOG0175|consensus
Probab=100.00 E-value=3.9e-35 Score=234.33 Aligned_cols=191 Identities=21% Similarity=0.255 Sum_probs=178.3
Q ss_pred cccCCcEEEEEeCCEEEEEEEecCccccc---ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Q psy16847 4 VKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPV 80 (208)
Q Consensus 4 v~~G~tvigi~~~dgVVla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 80 (208)
..+|+|.+|++++.|||+|+|+|.+.+.. ...+||.+|+++++-+++|-.+|++.+-+.+.++|+.|++++++.|++
T Consensus 68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSV 147 (285)
T KOG0175|consen 68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISV 147 (285)
T ss_pred ecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceeh
Confidence 35899999999999999999999999953 578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCCHH
Q psy16847 81 FRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLE 160 (208)
Q Consensus 81 ~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s~~ 160 (208)
...++.|++++.+|. |+ .+.+..+|||||+.||.||.||..|+-...+-.++|+|+.+|.++|++.|+ ++||.|
T Consensus 148 saASKllsN~~y~Yk---Gm-GLsmGtMi~G~Dk~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr--~dls~e 221 (285)
T KOG0175|consen 148 SAASKLLSNMVYQYK---GM-GLSMGTMIAGWDKKGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYR--YDLSDE 221 (285)
T ss_pred HHHHHHHHHHHhhcc---Cc-chhheeeEeeccCCCCceEEEcCCCCEecCceEeecCCCceeEEeeccCCC--CCCCHH
Confidence 999999999996663 22 456889999999999999999999999999999999999999999999999 899999
Q ss_pred HHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeec-eeecCCCC
Q psy16847 161 EIVKHGLRALRDTLPNDSELTTKVRYSYVLTVS-IHSTSTYP 201 (208)
Q Consensus 161 eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~-~~~~~~~~ 201 (208)
||.+|+++|+..+..|| ..++..+.++-|+++ |+......
T Consensus 222 EA~~L~rrAI~hAThRD-aySGG~vnlyHv~edGW~~v~~~D 262 (285)
T KOG0175|consen 222 EAYDLARRAIYHATHRD-AYSGGVVNLYHVKEDGWVKVSNTD 262 (285)
T ss_pred HHHHHHHHHHHHHHhcc-cccCceEEEEEECCccceecCCcc
Confidence 99999999999999999 699999999999999 77766654
No 39
>KOG0173|consensus
Probab=100.00 E-value=4.9e-34 Score=227.55 Aligned_cols=194 Identities=24% Similarity=0.274 Sum_probs=177.2
Q ss_pred cccccCCcEEEEEeCCEEEEEEEecCccccc---ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy16847 2 EAVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTL 78 (208)
Q Consensus 2 ~av~~G~tvigi~~~dgVVla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 78 (208)
++.+.|+|++|+.++||||+++|+|.+.+.. .+.+||+.+.++|+||.+|-.+|...+.+.+-.+...|++..++++
T Consensus 32 ~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~~ 111 (271)
T KOG0173|consen 32 KATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRKP 111 (271)
T ss_pred cccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCCC
Confidence 4567899999999999999999999999953 5889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCC
Q psy16847 79 PVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEAS 158 (208)
Q Consensus 79 ~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s 158 (208)
++-...+++.+.+..|. | -.|..++++|+|..|||||.+.|.|+...-.+.+.|+|+..++.+||++|+ |+|+
T Consensus 112 rVv~A~~mlkQ~LFrYq---G--~IgA~LiiGGvD~TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k--~dlt 184 (271)
T KOG0173|consen 112 RVVTALRMLKQHLFRYQ---G--HIGAALILGGVDPTGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWK--PDLT 184 (271)
T ss_pred ceeeHHHHHHHHHHHhc---C--cccceeEEccccCCCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhcC--cccC
Confidence 99999999999887664 2 479999999999999999999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeec---eeecCCCCce
Q psy16847 159 LEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVS---IHSTSTYPNV 203 (208)
Q Consensus 159 ~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~---~~~~~~~~~~ 203 (208)
+|||++|+.+|+...+..|. -||.|+++|||++. |...-+-||+
T Consensus 185 ~eea~~Lv~eAi~AGi~nDL-gSGsnvdlcVI~~~~~~~lr~~~~~~~ 231 (271)
T KOG0173|consen 185 KEEAIKLVCEAIAAGIFNDL-GSGSNVDLCVITKKGVEYLRNYSRPNE 231 (271)
T ss_pred HHHHHHHHHHHHHhhhcccc-CCCCceeEEEEeCCCccccccCCCCCC
Confidence 99999999999999999994 79999999999976 3344444444
No 40
>KOG0185|consensus
Probab=100.00 E-value=3.3e-33 Score=220.71 Aligned_cols=198 Identities=18% Similarity=0.164 Sum_probs=182.5
Q ss_pred ccCCcEEEEEeCCEEEEEEEecCcccc-c--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHH-HHcCCCCCH
Q psy16847 5 KQGSATVGLKNKTHAVIIALKRAASEL-A--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYK-YAHKDTLPV 80 (208)
Q Consensus 5 ~~G~tvigi~~~dgVVla~d~~~~~~l-~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~-~~~~~~i~~ 80 (208)
-+|++|||++++||||+|+|+..+.+. . .+.+|||+++||+.+++||..+|++.+.+.+.....+.. +..|+.+.|
T Consensus 39 vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~~~Dg~~l~P 118 (256)
T KOG0185|consen 39 VTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNRLDDGQSLGP 118 (256)
T ss_pred eccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhcccccccccccCh
Confidence 479999999999999999999999994 3 689999999999999999999999999999988877654 566799999
Q ss_pred HHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCCC-cEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhC-CCCCCC
Q psy16847 81 FRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAG-PHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLA-DFPEAS 158 (208)
Q Consensus 81 ~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g-~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~-~~~~~s 158 (208)
+.+++.|...+ |.+|+.+.|+..++++||+|.+| |.|-.+|-.|...+.+..|+|.|..++.++|++.|+ +.++++
T Consensus 119 k~ih~yltrvl--Y~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~~~k~~~~s 196 (256)
T KOG0185|consen 119 KAIHSYLTRVL--YARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESPVVATGFGAHLALPLLRDEWEKKGEDLS 196 (256)
T ss_pred HHHHHHHHHHH--HHhhhccCchhhheeEeeecCCCCeeEEEEeeccccccCchhhhhhHHHhhhHHHHHhhhccchhhH
Confidence 99999999999 89999999999999999999865 999999999999999999999999999999999998 458899
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeec-eeecCCCCceee
Q psy16847 159 LEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVS-IHSTSTYPNVTY 205 (208)
Q Consensus 159 ~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~-~~~~~~~~~~~~ 205 (208)
.+||.+++.+||+...+||. .+..+++|++|+++ .+...||-.+++
T Consensus 197 ~eeA~~li~~cMrVL~YRD~-ra~n~fqva~v~~eGv~i~~p~qv~~~ 243 (256)
T KOG0185|consen 197 REEAEALIEKCMRVLYYRDA-RASNEFQVATVDEEGVTISKPYQVKTN 243 (256)
T ss_pred HHHHHHHHHHHHHHHhcccc-ccccceEEEEEcccceEecCceeeeec
Confidence 99999999999999999994 79999999999999 788888876654
No 41
>KOG0177|consensus
Probab=100.00 E-value=5.8e-33 Score=213.03 Aligned_cols=183 Identities=18% Similarity=0.245 Sum_probs=171.7
Q ss_pred cEEEEEeCCEEEEEEEecCcccc---cccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Q psy16847 9 ATVGLKNKTHAVIIALKRAASEL---AAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLIS 85 (208)
Q Consensus 9 tvigi~~~dgVVla~d~~~~~~l---~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~ 85 (208)
+++||++.|+|++|+|+...+++ .++.+|+++++|++.++++|..+|+..+.+++.+.++.|+.++|-++|++.+|+
T Consensus 3 ~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aah 82 (200)
T KOG0177|consen 3 TLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAAH 82 (200)
T ss_pred eEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHHH
Confidence 68999999999999999988884 378999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCccceeeEEEEEeC-CCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCCHHHHHH
Q psy16847 86 IVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVK 164 (208)
Q Consensus 86 ~l~~~~~~~t~~~~~rP~~v~~ll~G~d~-~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s~~eai~ 164 (208)
++.+.+.++.+. ++||.|++|+||+|+ .||.||++|..|+..+.++++.|.++.+..++|++.|+ |+|+.+||++
T Consensus 83 FtR~~La~~LRs--r~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~--pdmt~eea~~ 158 (200)
T KOG0177|consen 83 FTRRELAESLRS--RTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYK--PDMTIEEALD 158 (200)
T ss_pred HHHHHHHHHHhc--CCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhC--CCCCHHHHHH
Confidence 999999988863 479999999999995 57999999999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHhhCCCCcCCCCCcEEEEEEeeceee
Q psy16847 165 HGLRALRDTLPNDSELTTKVRYSYVLTVSIHS 196 (208)
Q Consensus 165 l~~~al~~~~~~d~~~~~~~i~v~vi~~~~~~ 196 (208)
+..+|+.+.-+|= ..+.+++.|.||++|+..
T Consensus 159 lmkKCv~El~kRl-vin~~~f~v~IVdkdGir 189 (200)
T KOG0177|consen 159 LMKKCVLELKKRL-VINLPGFIVKIVDKDGIR 189 (200)
T ss_pred HHHHHHHHHHHhc-ccCCCCcEEEEEcCCCce
Confidence 9999999988884 579999999999999443
No 42
>KOG0174|consensus
Probab=100.00 E-value=1e-32 Score=212.43 Aligned_cols=191 Identities=19% Similarity=0.217 Sum_probs=175.1
Q ss_pred cccCCcEEEEEeCCEEEEEEEecCccccc---ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Q psy16847 4 VKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPV 80 (208)
Q Consensus 4 v~~G~tvigi~~~dgVVla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 80 (208)
+..|+|++|+++++||||++|+|.+.+.+ +..+|+.+|.|+|+||-||..+|.|.+.+.++.....|..+++.++++
T Consensus 16 vstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~v 95 (224)
T KOG0174|consen 16 VSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPLV 95 (224)
T ss_pred cccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCchH
Confidence 56899999999999999999999999953 678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCccceeeEEEEEeC-CCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCCH
Q psy16847 81 FRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASL 159 (208)
Q Consensus 81 ~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~-~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s~ 159 (208)
...|..++++..+| +. -+-..+|+||||+ .|.++|.+--.|...+-.++.-|+||.+++++++.+|+ |+|++
T Consensus 96 ~~aA~l~r~~~Y~~--re---~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r--~nMt~ 168 (224)
T KOG0174|consen 96 HTAASLFREICYNY--RE---MLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWR--PNMTL 168 (224)
T ss_pred HHHHHHHHHHHHhC--HH---hhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhcC--CCCCH
Confidence 99999999988443 22 3789999999995 68999999999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeeceeecCCCCc
Q psy16847 160 EEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVSIHSTSTYPN 202 (208)
Q Consensus 160 ~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~~~~~~~~~ 202 (208)
||++++..+|+..+++||- .++..|...+|+++++...-||.
T Consensus 169 EE~~~fvk~Av~lAi~rDG-sSGGviR~~~I~~~Gver~~~~~ 210 (224)
T KOG0174|consen 169 EECVRFVKNAVSLAIERDG-SSGGVIRLVIINKAGVERRFFPG 210 (224)
T ss_pred HHHHHHHHHHHHHHHhccC-CCCCEEEEEEEccCCceEEEecC
Confidence 9999999999999999994 79999999999999666555543
No 43
>KOG0180|consensus
Probab=100.00 E-value=9.4e-32 Score=203.59 Aligned_cols=183 Identities=21% Similarity=0.270 Sum_probs=172.2
Q ss_pred cCCcEEEEEeCCEEEEEEEecCcccc---cccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Q psy16847 6 QGSATVGLKNKTHAVIIALKRAASEL---AAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFR 82 (208)
Q Consensus 6 ~G~tvigi~~~dgVVla~d~~~~~~l---~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~ 82 (208)
+|++++|.++++||.||+|.|..... ..+.+|||+++|+++++.+|+..|.+.+.++++.....|+++.+++|-++.
T Consensus 7 nGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~~ 86 (204)
T KOG0180|consen 7 NGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPET 86 (204)
T ss_pred cCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcHH
Confidence 79999999999999999999987664 368899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCccceeeEEEEEeCCC-cEEEEECCCCceeec-eEEeeCCCcHHHHHHHHHhhCCCCCCCHH
Q psy16847 83 LISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAG-PHIYQTCPSSNYYDV-KAMAIGSRSQSARTYLEKRLADFPEASLE 160 (208)
Q Consensus 83 la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g-~~ly~vd~~G~~~~~-~~~a~G~~~~~~~~~Le~~~~~~~~~s~~ 160 (208)
++.++|..+ |.+|.+ ||-+..++||+|+++ |.|..+|..|..... ++.+.|.+++...+.+|..|+ |+|+.|
T Consensus 87 ~s~mvS~~l--YekRfg--pYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~--pnmepd 160 (204)
T KOG0180|consen 87 FSSMVSSLL--YEKRFG--PYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYE--PNMEPD 160 (204)
T ss_pred HHHHHHHHH--HHhhcC--CcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcC--CCCCHH
Confidence 999999999 777775 999999999999754 999999999998764 899999999999999999999 999999
Q ss_pred HHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeecee
Q psy16847 161 EIVKHGLRALRDTLPNDSELTTKVRYSYVLTVSIH 195 (208)
Q Consensus 161 eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~~ 195 (208)
++.+.+.+||.++.+|| .+||....|+||++|.+
T Consensus 161 ~LFetisQa~Lna~DRD-alSGwGa~vyiI~kdkv 194 (204)
T KOG0180|consen 161 ELFETISQALLNAVDRD-ALSGWGAVVYIITKDKV 194 (204)
T ss_pred HHHHHHHHHHHhHhhhh-hhccCCeEEEEEccchh
Confidence 99999999999999999 69999999999999943
No 44
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.97 E-value=9.7e-31 Score=203.40 Aligned_cols=163 Identities=17% Similarity=0.071 Sum_probs=137.6
Q ss_pred CcEEEEEeCCEEEEEEEecCccccc---ccccceEEEcC-ceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q psy16847 8 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDD-HMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRL 83 (208)
Q Consensus 8 ~tvigi~~~dgVVla~d~~~~~~l~---~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 83 (208)
+|+|||+++||||||+|+|.+.+.. ++.+||++|+| |++|+++|..+|++.|.++++.+++.|+.+.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 5899999999999999999999843 68899999999 999999999999999999999999999987764 34
Q ss_pred HHHHHHHHHHHhhccCCCccc-eeeEEEEEeCCCcEEEEECCCCceeece--EEeeCCCcHHHHHHHHHhhCCCCC-CCH
Q psy16847 84 ISIVGNKMQVCTQRYDKRPYG-VGLLVAGYDDAGPHIYQTCPSSNYYDVK--AMAIGSRSQSARTYLEKRLADFPE-ASL 159 (208)
Q Consensus 84 a~~l~~~~~~~t~~~~~rP~~-v~~ll~G~d~~g~~ly~vd~~G~~~~~~--~~a~G~~~~~~~~~Le~~~~~~~~-~s~ 159 (208)
++.+.. +..| ..+|+. +.++++++ ++||.+||.|++.+.+ +.++|+|+.++.++||.+|+ ++ |+
T Consensus 76 a~l~~~-l~~~----~~~~~l~a~~iv~~~----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk--~~~ms- 143 (171)
T cd01913 76 VELAKD-WRTD----RYLRRLEAMLIVADK----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLD--HTDLS- 143 (171)
T ss_pred HHHHHH-HHhc----cCcCceEEEEEEeCC----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhc--cCCCC-
Confidence 444332 2112 235666 55555544 4999999999999995 99999999999999999999 74 99
Q ss_pred HHHHHHHHHHHHhhCCCCcCCCCCcEEEEEE
Q psy16847 160 EEIVKHGLRALRDTLPNDSELTTKVRYSYVL 190 (208)
Q Consensus 160 ~eai~l~~~al~~~~~~d~~~~~~~i~v~vi 190 (208)
+.+++++|++.+++|| ..++++|+|-++
T Consensus 144 --~~~la~~Av~~A~~rd-~~tg~~i~~~~~ 171 (171)
T cd01913 144 --AEEIARKALKIAADIC-IYTNHNITVEEL 171 (171)
T ss_pred --HHHHHHHHHHHHHhhC-cccCCCEEEEeC
Confidence 5599999999999999 599999998653
No 45
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.97 E-value=4.7e-30 Score=196.89 Aligned_cols=159 Identities=38% Similarity=0.520 Sum_probs=152.0
Q ss_pred CcEEEEEeCCEEEEEEEecCccccc---ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q psy16847 8 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 84 (208)
Q Consensus 8 ~tvigi~~~dgVVla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 84 (208)
+|+||++++||||+|+|++.+.++. ....|++.++++++++++|..+|++.+.++++.+++.|++.++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 5899999999999999999999864 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeec-eEEeeCCCcHHHHHHHHHhhCCCCCCCHHHHH
Q psy16847 85 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDV-KAMAIGSRSQSARTYLEKRLADFPEASLEEIV 163 (208)
Q Consensus 85 ~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~-~~~a~G~~~~~~~~~Le~~~~~~~~~s~~eai 163 (208)
+.+++.++.+++ +||++++++++|+|+++|+||.+||.|++.++ .++++|.++..+.++|++.|+ ++++.+|++
T Consensus 81 ~~~~~~~~~~~~---~~p~~~~~iiag~~~~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~--~~~~~~~~~ 155 (164)
T cd01901 81 KELAKLLQVYTQ---GRPFGVNLIVAGVDEGGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYK--PDMTLEEAV 155 (164)
T ss_pred HHHHHHHHHhcC---CCCcceEEEEEEEcCCCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhc--CCCCHHHHH
Confidence 999999988876 69999999999999878999999999999999 999999999999999999998 789999999
Q ss_pred HHHHHHHH
Q psy16847 164 KHGLRALR 171 (208)
Q Consensus 164 ~l~~~al~ 171 (208)
+++.++|+
T Consensus 156 ~~~~~~l~ 163 (164)
T cd01901 156 ELALKALK 163 (164)
T ss_pred HHHHHHHh
Confidence 99999986
No 46
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.97 E-value=8.6e-31 Score=204.84 Aligned_cols=165 Identities=16% Similarity=0.103 Sum_probs=140.3
Q ss_pred CCcEEEEEeCCEEEEEEEecCcccc---cccccceEEE-cCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Q psy16847 7 GSATVGLKNKTHAVIIALKRAASEL---AAHQKKIIVI-DDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFR 82 (208)
Q Consensus 7 G~tvigi~~~dgVVla~d~~~~~~l---~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~ 82 (208)
|+|++||+++||||||+|+|.+.+. .++.+||++| +|+++|+.||..+|++.|.+.++.+++.|+. +. .+.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~----~~-~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG----NL-LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC----cc-HHH
Confidence 6899999999999999999999984 3688999999 9999999999999999999999999999882 22 455
Q ss_pred HHHHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeec--eEEeeCCCcHHHHHHHHHhhCCCCCCCHH
Q psy16847 83 LISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDV--KAMAIGSRSQSARTYLEKRLADFPEASLE 160 (208)
Q Consensus 83 la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~--~~~a~G~~~~~~~~~Le~~~~~~~~~s~~ 160 (208)
.++.+..+ ..+ ...+|+.+++|++ |. |+||.+||.|+..+. +++|+|+|+.++.++||++|+. |+|
T Consensus 76 ~a~l~~~l-~~~---~~~~~l~~~~lv~--d~--~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~-~~m--- 143 (172)
T PRK05456 76 AVELAKDW-RTD---RYLRRLEAMLIVA--DK--EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLEN-TDL--- 143 (172)
T ss_pred HHHHHHHH-Hhc---cCCCccEEEEEEE--cC--CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhc-CCC---
Confidence 55444332 111 1235888999994 33 799999999999776 7999999999999999999983 588
Q ss_pred HHHHHHHHHHHhhCCCCcCCCCCcEEEEE
Q psy16847 161 EIVKHGLRALRDTLPNDSELTTKVRYSYV 189 (208)
Q Consensus 161 eai~l~~~al~~~~~~d~~~~~~~i~v~v 189 (208)
||++++++|++.+.+|| ..++++|+|-.
T Consensus 144 eA~~la~kai~~A~~Rd-~~sg~~i~v~~ 171 (172)
T PRK05456 144 SAEEIAEKALKIAADIC-IYTNHNITIEE 171 (172)
T ss_pred CHHHHHHHHHHHHHHhC-eeCCCcEEEEE
Confidence 99999999999999999 58999999865
No 47
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.97 E-value=1.4e-29 Score=196.93 Aligned_cols=163 Identities=15% Similarity=0.054 Sum_probs=135.9
Q ss_pred CcEEEEEeCCEEEEEEEecCccccc---ccccceEEE-cCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q psy16847 8 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVI-DDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRL 83 (208)
Q Consensus 8 ~tvigi~~~dgVVla~d~~~~~~l~---~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 83 (208)
+|++||+++||||||+|+|.+.+.. ++.+||++| +||++|+++|..+|++.|.++++.+++.|+... .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 5899999999999999999999843 688999999 599999999999999999999999999987632 3555
Q ss_pred HHHHHHHHHHHhhccCCCccc-eeeEEEEEeCCCcEEEEECCCCceeec--eEEeeCCCcHHHHHHHHHhhCCCCCCCHH
Q psy16847 84 ISIVGNKMQVCTQRYDKRPYG-VGLLVAGYDDAGPHIYQTCPSSNYYDV--KAMAIGSRSQSARTYLEKRLADFPEASLE 160 (208)
Q Consensus 84 a~~l~~~~~~~t~~~~~rP~~-v~~ll~G~d~~g~~ly~vd~~G~~~~~--~~~a~G~~~~~~~~~Le~~~~~~~~~s~~ 160 (208)
++.+.+. +.| ..+|+- +.+++++| ++||.+||.|.+.+. +++++|+|+.++.++||.+|++ ++|+
T Consensus 76 a~l~~~~-~~~----~~~~~l~a~~iv~~~----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~-~~~s-- 143 (171)
T TIGR03692 76 VELAKDW-RTD----RYLRRLEAMLIVADK----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRN-TDLS-- 143 (171)
T ss_pred HHHHHHH-hhc----ccccccEEEEEEEcC----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhc-CCCC--
Confidence 5554442 111 123433 66666544 499999999999997 5999999999999999999953 5677
Q ss_pred HHHHHHHHHHHhhCCCCcCCCCCcEEEEE
Q psy16847 161 EIVKHGLRALRDTLPNDSELTTKVRYSYV 189 (208)
Q Consensus 161 eai~l~~~al~~~~~~d~~~~~~~i~v~v 189 (208)
|++++++|++.+++|| ..++++|+|-.
T Consensus 144 -a~~la~~Av~~A~~rd-~~sg~~i~v~~ 170 (171)
T TIGR03692 144 -AEEIAREALKIAADIC-IYTNHNITIEE 170 (171)
T ss_pred -HHHHHHHHHHHHHhhC-ccCCCCEEEEe
Confidence 9999999999999999 58999999865
No 48
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=2.1e-11 Score=95.54 Aligned_cols=182 Identities=18% Similarity=0.254 Sum_probs=141.9
Q ss_pred CcEEEEEeCCEEEEEEEecCccccc--ccccceEEEc---Cc-eeEeecccHHHHHHHHHHHHHHHHHHH-HHcCCCCCH
Q psy16847 8 SATVGLKNKTHAVIIALKRAASELA--AHQKKIIVID---DH-MGLSFAGLTADARILARFMRMECLNYK-YAHKDTLPV 80 (208)
Q Consensus 8 ~tvigi~~~dgVVla~d~~~~~~l~--~~~~Ki~~i~---~~-i~~~~sG~~~D~~~l~~~~~~~~~~~~-~~~~~~i~~ 80 (208)
+-|||++.+.|.|+++|+|.+.+.- ...+|+|-.. |+ ++++.+|..+-.|.+++.+.+..+..+ -.--+-.++
T Consensus 2 TYCv~l~l~~GlVf~sDsRTNAGvD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~sm 81 (255)
T COG3484 2 TYCVGLILDFGLVFGSDSRTNAGVDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPSM 81 (255)
T ss_pred ceEEEEEeccceEEecccccccCchHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcchhH
Confidence 4689999999999999999999862 4666665443 33 566789999999999999987775221 112233567
Q ss_pred HHHHHHHHHHHHHHhhccC------CCccceeeEEEEEeCCC-cEEEEECCCCceeec----eEEeeCCCcHHHHHHHHH
Q psy16847 81 FRLISIVGNKMQVCTQRYD------KRPYGVGLLVAGYDDAG-PHIYQTCPSSNYYDV----KAMAIGSRSQSARTYLEK 149 (208)
Q Consensus 81 ~~la~~l~~~~~~~t~~~~------~rP~~v~~ll~G~d~~g-~~ly~vd~~G~~~~~----~~~a~G~~~~~~~~~Le~ 149 (208)
-..+..++...++-.-+.. ---|.|++|++|.-..+ |+||.+.|.|++++- .+.-+|. +.+-+++|++
T Consensus 82 ~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGE-tKYGKPildR 160 (255)
T COG3484 82 YEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGE-TKYGKPILDR 160 (255)
T ss_pred HHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEccc-cccCchhhhh
Confidence 7777788877665432210 12578999999998655 999999999999885 5888998 6788999999
Q ss_pred hhCCCCCCCHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeec
Q psy16847 150 RLADFPEASLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVS 193 (208)
Q Consensus 150 ~~~~~~~~s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~ 193 (208)
.++ .+++++|+.+.++-++...+... ...|-.+++.++..|
T Consensus 161 ~i~--~~~pLeea~kcaLvS~DSTlkSN-iSVGlPldLl~~e~d 201 (255)
T COG3484 161 TIT--YDTPLEEAAKCALVSFDSTLKSN-ISVGLPLDLLVYEAD 201 (255)
T ss_pred hhh--ccCCHHHHhhheEEecchhhhcc-ccccCCceeEEEecc
Confidence 998 79999999999999998888765 346888999999888
No 49
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=2.7e-11 Score=91.69 Aligned_cols=167 Identities=20% Similarity=0.170 Sum_probs=126.4
Q ss_pred cCCcEEEEEeCCEEEEEEEecCcccc---ccc---ccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q psy16847 6 QGSATVGLKNKTHAVIIALKRAASEL---AAH---QKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLP 79 (208)
Q Consensus 6 ~G~tvigi~~~dgVVla~d~~~~~~l---~~~---~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 79 (208)
+++|+++++-++-|++++|.+.+-+- ..+ .+||+ +.++..+|+|-.+|+..|.+++..+++.|. | .
T Consensus 3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~--~gkvlaGFAGstADaftLfe~fe~kle~~~---g---~ 74 (178)
T COG5405 3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLY--NGKVLAGFAGSTADAFTLFERFEAKLEQYQ---G---D 74 (178)
T ss_pred eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHc--CCcEEEEecccchhHHHHHHHHHHHHHHcc---C---c
Confidence 68999999999999999999998883 234 45555 568999999999999999999999998874 1 2
Q ss_pred HHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeec--eEEeeCCCcHHHHHHHHHhhCCCCCC
Q psy16847 80 VFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDV--KAMAIGSRSQSARTYLEKRLADFPEA 157 (208)
Q Consensus 80 ~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~--~~~a~G~~~~~~~~~Le~~~~~~~~~ 157 (208)
....+-.+++-+ ++.+ ..|-+..-++++ |+ -++|-+...|-..+. ..+|+|+|..++..--.-.++. +++
T Consensus 75 L~raavelaKdw--r~Dk-~lr~LEAmllVa--d~--~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~-~~l 146 (178)
T COG5405 75 LFRAAVELAKDW--RTDK-YLRKLEAMLLVA--DK--THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMEN-TEL 146 (178)
T ss_pred HHHHHHHHHHhh--hhhh-HHHHHhhheeEe--CC--CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhc-cCC
Confidence 333555566655 2322 234455666665 32 568888888888775 5899999999999998888763 566
Q ss_pred CHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEee
Q psy16847 158 SLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTV 192 (208)
Q Consensus 158 s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~ 192 (208)
+ |.+++.++|..+.+.+ ..+..+|.|-.+..
T Consensus 147 s---A~eIa~~sl~iA~eic-iyTN~ni~ve~l~~ 177 (178)
T COG5405 147 S---AREIAEKSLKIAGDIC-IYTNHNIVVEELRL 177 (178)
T ss_pred C---HHHHHHHHHhhhheEE-EecCCcEEEEEeec
Confidence 6 5567888888888775 57899999887653
No 50
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=97.24 E-value=0.0069 Score=47.80 Aligned_cols=151 Identities=21% Similarity=0.221 Sum_probs=91.6
Q ss_pred CcEEEEEeCCEEEEEEEecCcccccccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCC-CHHHHHHH
Q psy16847 8 SATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTL-PVFRLISI 86 (208)
Q Consensus 8 ~tvigi~~~dgVVla~d~~~~~~l~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i-~~~~la~~ 86 (208)
+.+||..+++|.|+|+|+|. ++|-|.......|-+.| |...| +=+.|.+.
T Consensus 2 SLII~y~GknGaViaGDkR~-------------------I~F~G~~~~re~LEeeL----------YsG~IktdeEL~kk 52 (194)
T PF09894_consen 2 SLIIAYYGKNGAVIAGDKRN-------------------IAFRGDEEKREKLEEEL----------YSGKIKTDEELLKK 52 (194)
T ss_pred eEEEEEecCCCcEEecccee-------------------eeecCCHHHHHHHHHHH----------hCCccCCHHHHHHH
Confidence 45789999999999999984 67788876666655544 33443 44455554
Q ss_pred HHHH---HHHHhhccCCCccceeeEEEEE------eCCCcEEEEE-------CCCCceeeceEEeeCCCc----------
Q psy16847 87 VGNK---MQVCTQRYDKRPYGVGLLVAGY------DDAGPHIYQT-------CPSSNYYDVKAMAIGSRS---------- 140 (208)
Q Consensus 87 l~~~---~~~~t~~~~~rP~~v~~ll~G~------d~~g~~ly~v-------d~~G~~~~~~~~a~G~~~---------- 140 (208)
...+ ++..-.+...|-.+- ++++-+ +...-++|.. |-.|.-. .-...|.++
T Consensus 53 A~Elgv~i~I~D~r~KV~~~~~-vlvGEV~s~~g~~skRRRiY~t~g~~~Ivei~~~~i--~~~~~g~~sgiIVfGNk~~ 129 (194)
T PF09894_consen 53 AEELGVKIKITDDREKVRKIGD-VLVGEVTSISGKDSKRRRIYATKGKYAIVEIENDEI--TNKSRGEGSGIIVFGNKFT 129 (194)
T ss_pred HHHcCCEEEEecCchheEEeCC-EEEEEEEEEcCccceeeEEEecCCCEEEEEecCCeE--EEEecCCceeEEEECCHHH
Confidence 4432 111111111122232 333322 3223556652 3333322 233445554
Q ss_pred -HHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeec
Q psy16847 141 -QSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVS 193 (208)
Q Consensus 141 -~~~~~~Le~~~~~~~~~s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~ 193 (208)
+.+...|.++|+ |.|+++++..+..++|..+...-+ ..+.++++...+..
T Consensus 130 K~ia~~~lkk~~~--~k~~l~~i~~i~~~i~~~~a~~tp-svS~~~d~~~~~~~ 180 (194)
T PF09894_consen 130 KEIANKELKKYWK--PKMSLKDIENIFEKIMEEVASKTP-SVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHhhcCC-CccCcEEEEEeccc
Confidence 677888889998 899999999999999999975544 34667777766543
No 51
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=93.66 E-value=3.5 Score=34.04 Aligned_cols=153 Identities=18% Similarity=0.226 Sum_probs=91.7
Q ss_pred CcEEEEEeCCEEEEEEEecCcccccccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q psy16847 8 SATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIV 87 (208)
Q Consensus 8 ~tvigi~~~dgVVla~d~~~~~~l~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l 87 (208)
+.+|+..+++|.|+|.|+|. +.+-|.-.|...+-+.| -.|.--|-++|++++
T Consensus 2 tLviay~gknGaviaGDrR~-------------------i~frgdee~re~lEekL---------YsGeIkteEEL~r~a 53 (293)
T COG4079 2 TLVIAYIGKNGAVIAGDRRE-------------------ITFRGDEEDREKLEEKL---------YSGEIKTEEELARKA 53 (293)
T ss_pred eEEEEEecCCCcEEeccceE-------------------EEEecChhHHHHHHHHh---------hcCccccHHHHHHHH
Confidence 45789999999999999873 56677777766665544 244445566676666
Q ss_pred HHHHHHHhh---ccCCCccceeeEEEEEeCCC------cEEEEECCCCcee--e-----ceEEeeCCCc-----------
Q psy16847 88 GNKMQVCTQ---RYDKRPYGVGLLVAGYDDAG------PHIYQTCPSSNYY--D-----VKAMAIGSRS----------- 140 (208)
Q Consensus 88 ~~~~~~~t~---~~~~rP~~v~~ll~G~d~~g------~~ly~vd~~G~~~--~-----~~~~a~G~~~----------- 140 (208)
..+--..+- +...|-..-+++++-+...+ -++|.. .|.+. + ......|.|+
T Consensus 54 eel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT--~Ga~aIvel~gs~vts~~~g~g~aiIv~Gnk~~K 131 (293)
T COG4079 54 EELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYAT--AGAYAIVELRGSEVTSTSQGKGSAIIVFGNKFTK 131 (293)
T ss_pred HHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeec--CCceEEEEecCCeeEeeecCCCceEEEECcHHHH
Confidence 554211211 11122233344444443211 344442 23221 1 1233344422
Q ss_pred HHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeec
Q psy16847 141 QSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVS 193 (208)
Q Consensus 141 ~~~~~~Le~~~~~~~~~s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~ 193 (208)
+.+..+|.++|. +.++++++..+...+|..+..--+ ..+++.+++.+..+
T Consensus 132 e~aneflk~~l~--~k~~lqd~~dal~elfe~vss~tp-sVskeydiy~vs~~ 181 (293)
T COG4079 132 EVANEFLKDNLT--KKSKLQDAVDALMELFETVSSKTP-SVSKEYDIYQVSSN 181 (293)
T ss_pred HHHHHHHHhhcc--CCCCHHHHHHHHHHHHHHhhcCCC-cccceeEEEEecCC
Confidence 456788888898 789999999999999988875543 45778888877654
No 52
>KOG3361|consensus
Probab=85.44 E-value=1.9 Score=32.22 Aligned_cols=42 Identities=21% Similarity=0.180 Sum_probs=37.8
Q ss_pred EEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCCHHHHH
Q psy16847 120 YQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIV 163 (208)
Q Consensus 120 y~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s~~eai 163 (208)
..+|-+|-+.+.++-..|.||..+.+.+-..|- ..+++||+.
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewv--kgkt~dea~ 112 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWV--KGKTLDEAL 112 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHH--ccccHHHHH
Confidence 468889999999999999999999999999988 588888876
No 53
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=55.40 E-value=9.9 Score=22.82 Aligned_cols=34 Identities=26% Similarity=0.451 Sum_probs=24.7
Q ss_pred eeCCCcHHHHHHHHHhhCCCCCCCHHHHHHHHHHH
Q psy16847 135 AIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRA 169 (208)
Q Consensus 135 a~G~~~~~~~~~Le~~~~~~~~~s~~eai~l~~~a 169 (208)
+.|.....+...+.+... .++++.++.++.+++.
T Consensus 12 ~LGy~~~e~~~av~~~~~-~~~~~~e~~ik~aLk~ 45 (47)
T PF07499_consen 12 SLGYSKAEAQKAVSKLLE-KPGMDVEELIKQALKL 45 (47)
T ss_dssp HTTS-HHHHHHHHHHHHH-STTS-HHHHHHHHHCC
T ss_pred HcCCCHHHHHHHHHHhhc-CCCCCHHHHHHHHHhh
Confidence 458888888888888763 2789999988887654
No 54
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=46.94 E-value=36 Score=20.69 Aligned_cols=32 Identities=22% Similarity=0.213 Sum_probs=27.2
Q ss_pred EEECCCCceeeceEEeeCCCcHHHHHHHHHhh
Q psy16847 120 YQTCPSSNYYDVKAMAIGSRSQSARTYLEKRL 151 (208)
Q Consensus 120 y~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~ 151 (208)
|.++|+|.....--...|.....+...||...
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 67899999988888888998888888888754
No 55
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=42.29 E-value=32 Score=19.40 Aligned_cols=26 Identities=23% Similarity=0.126 Sum_probs=13.7
Q ss_pred eCCCcEEEEECCCCceeeceEEeeCC
Q psy16847 113 DDAGPHIYQTCPSSNYYDVKAMAIGS 138 (208)
Q Consensus 113 d~~g~~ly~vd~~G~~~~~~~~a~G~ 138 (208)
|..|--+-.+||.|....+.+-+.|.
T Consensus 2 D~~G~l~~~~d~~G~~~~y~YD~~g~ 27 (38)
T PF05593_consen 2 DANGRLTSVTDPDGRTTRYTYDAAGR 27 (38)
T ss_pred CCCCCEEEEEcCCCCEEEEEECCCCC
Confidence 33444444556666666555555543
No 56
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=40.81 E-value=46 Score=27.89 Aligned_cols=52 Identities=15% Similarity=0.083 Sum_probs=34.6
Q ss_pred EEEEeCCCcEEEEECCCCceeec---eEEeeCCCcHHHHHHHHHhhCCCCCCCHHHHHHHHHHH
Q psy16847 109 VAGYDDAGPHIYQTCPSSNYYDV---KAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRA 169 (208)
Q Consensus 109 l~G~d~~g~~ly~vd~~G~~~~~---~~~a~G~~~~~~~~~Le~~~~~~~~~s~~eai~l~~~a 169 (208)
++|.| -.+..+|..|..... +.||.|+|+ |||..-+. -+++++|.-+++.++
T Consensus 104 IGGQD---~K~I~~~~~G~v~~f~MNdkCAAGTG~-----FLe~~A~~-L~i~leel~~~a~~~ 158 (262)
T TIGR02261 104 IGALH---GRAIRMDERGKVEAYKMTSQCASGSGQ-----FLENIARY-LGIAQDEIGSLSQQA 158 (262)
T ss_pred eCCCc---eEEEEEcCCCcEeeEEecCcccccccH-----HHHHHHHH-hCCCHHHHHHHHhcC
Confidence 56776 458889999987765 688889976 33332211 257887776666555
No 57
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=39.20 E-value=63 Score=20.98 Aligned_cols=32 Identities=6% Similarity=-0.078 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q psy16847 60 ARFMRMECLNYKYAHKDTLPVFRLISIVGNKM 91 (208)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~ 91 (208)
++++++.........|++++.+.+|..+.--.
T Consensus 3 l~~i~~a~~~L~~~lgr~Pt~eEiA~~lgis~ 34 (78)
T PF04539_consen 3 LRKIERARRELEQELGREPTDEEIAEELGISV 34 (78)
T ss_dssp HHHHHHHHHHHHHHHSS--BHHHHHHHHTS-H
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHcccH
Confidence 45666666777788999999999999876433
No 58
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=38.13 E-value=54 Score=20.23 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeec
Q psy16847 156 EASLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVS 193 (208)
Q Consensus 156 ~~s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~ 193 (208)
.-|+|||++.|...|. +..+.+++-||...
T Consensus 4 gkt~eeAi~~A~~~l~--------~~~~~~~~eVi~~g 33 (52)
T PF14804_consen 4 GKTVEEAIEKALKELG--------VPREELEYEVIEEG 33 (52)
T ss_dssp ESSHHHHHHHHHHHTT----------GGGEEEEEEE--
T ss_pred ECCHHHHHHHHHHHhC--------CChHHEEEEEEEcC
Confidence 3488999999988884 35568899998873
No 59
>KOG3652|consensus
Probab=37.39 E-value=88 Score=29.96 Aligned_cols=111 Identities=18% Similarity=0.141 Sum_probs=66.4
Q ss_pred ecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCce
Q psy16847 49 FAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNY 128 (208)
Q Consensus 49 ~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~ 128 (208)
-+|-.+-+-.+.+.+ | ....|++|....|.++.+.+.|-. |.. -|-|..+++.+--+||.||..|-.|.-
T Consensus 192 eAGRAaAc~sLcRIf---c---SKksgEeIl~a~LS~FY~ll~Q~L-q~k---dyvchpmLasl~ln~p~LFccdLkGId 261 (1215)
T KOG3652|consen 192 EAGRAAACASLCRIF---C---SKKSGEEILNAQLSNFYALLFQCL-QEK---DYVCHPMLASLFLNGPNLFCCDLKGID 261 (1215)
T ss_pred hhhHHHHHHHHHHhh---h---cccCcccccHHHHHHHHHHHHHHH-hhc---ccccchhheeeeecCCceeeecCCchh
Confidence 445554444444433 3 235789999999999999887743 322 355566666665578999999998864
Q ss_pred eeceE--EeeCCCcHHHHHHHHHhhCCCCCCC-HHHHHHHHHHHHHhhC
Q psy16847 129 YDVKA--MAIGSRSQSARTYLEKRLADFPEAS-LEEIVKHGLRALRDTL 174 (208)
Q Consensus 129 ~~~~~--~a~G~~~~~~~~~Le~~~~~~~~~s-~~eai~l~~~al~~~~ 174 (208)
.-..+ .|.- -..+...+ .++++..+ ..|.-+.++++|...+
T Consensus 262 ~llP~Fi~ALd--~il~dre~---~rkfkS~~n~tElRRa~in~LlSli 305 (1215)
T KOG3652|consen 262 SLLPHFIFALD--IILIDREK---LRKFKSISNETELRRACINALLSLI 305 (1215)
T ss_pred HhhHHHHHHHH--hhhccHHH---hhhccccCCHHHHHHHHHHHHHHhc
Confidence 32222 1110 00111111 22234554 7788888999988776
No 60
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=34.43 E-value=74 Score=27.16 Aligned_cols=51 Identities=12% Similarity=0.062 Sum_probs=33.3
Q ss_pred eEEEEEeCCCcEEEEECCCCceeec---eEEeeCCCcHHHHHHHHHhhCCCCCCCHHHHHHHH
Q psy16847 107 LLVAGYDDAGPHIYQTCPSSNYYDV---KAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHG 166 (208)
Q Consensus 107 ~ll~G~d~~g~~ly~vd~~G~~~~~---~~~a~G~~~~~~~~~Le~~~~~~~~~s~~eai~l~ 166 (208)
+=|+|.| -.+..+|..|...+. +.||.|+|+ |||..-+. -+++++|.-+++
T Consensus 130 IDIGGQD---sK~I~~d~~G~v~dF~MNdkCAAGTGr-----FLE~~A~~-Lgi~leel~~~a 183 (293)
T TIGR03192 130 LDMGGQD---CKAIHCDEKGKVTNFLMNDKCAAGTGR-----GMEVISDL-MQIPIADLGPRS 183 (293)
T ss_pred EEeCCCc---eEEEEEcCCCcEeeeeecCcccccccH-----HHHHHHHH-cCCCHHHHHHHH
Confidence 3367776 468888999986664 688889976 44432221 257877765554
No 61
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=33.15 E-value=69 Score=25.57 Aligned_cols=34 Identities=9% Similarity=0.234 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEe
Q psy16847 76 DTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD 113 (208)
Q Consensus 76 ~~i~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d 113 (208)
.+-+++..+.-++.+++.|.++++.+ .++|.|+.
T Consensus 43 ~~rtP~~~a~Dl~~~i~~y~~~w~~~----~vvLiGYS 76 (192)
T PF06057_consen 43 SERTPEQTAADLARIIRHYRARWGRK----RVVLIGYS 76 (192)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHhCCc----eEEEEeec
Confidence 35688999999999999999988654 45778884
No 62
>PF07104 DUF1366: Protein of unknown function (DUF1366); InterPro: IPR009796 This entry is represented by Streptococcus phage 7201, Orf40. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Streptococcus thermophilus bacteriophage proteins of around 130 residues in length. One of the sequences in this family, from phage Sfi11 (O80186 from SWISSPROT) is known as Gp149. The function of this family is unknown.
Probab=32.40 E-value=41 Score=24.56 Aligned_cols=51 Identities=12% Similarity=0.100 Sum_probs=25.1
Q ss_pred ECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhhCC
Q psy16847 122 TCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLP 175 (208)
Q Consensus 122 vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s~~eai~l~~~al~~~~~ 175 (208)
.||+|+....+..-.|.....+--.|...+ -+.+-.|.+++|.+.++....
T Consensus 11 ~~~dGsv~~T~ViL~~~dGa~ip~~L~~D~---~~ks~~ELi~~ale~iy~e~~ 61 (116)
T PF07104_consen 11 YDPDGSVSKTKVILTNDDGAYIPVFLPGDK---IDKSNTELIELALEMIYQENF 61 (116)
T ss_pred cCCCCCeeeeEEEEEcCCCcEEEeeCChhh---hcCCHHHHHHHHHHHHHHHhc
Confidence 345555555554444444333322333322 245666666666666665443
No 63
>TIGR01643 YD_repeat_2x YD repeat (two copies). This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.
Probab=32.14 E-value=57 Score=18.40 Aligned_cols=9 Identities=11% Similarity=-0.112 Sum_probs=3.3
Q ss_pred ECCCCceee
Q psy16847 122 TCPSSNYYD 130 (208)
Q Consensus 122 vd~~G~~~~ 130 (208)
.||.|....
T Consensus 11 ~~p~G~~~~ 19 (42)
T TIGR01643 11 TDADGTTTR 19 (42)
T ss_pred ECCCCCEEE
Confidence 333333333
No 64
>PF08289 Flu_M1_C: Influenza Matrix protein (M1) C-terminal domain; InterPro: IPR013188 Matrix protein (M1) of Influenza virus is a bifunctional membrane/RNA-binding protein that mediates the encapsidation of RNA-nucleoprotein cores into the membrane envelope. It is therefore required that M1 binds both membrane and RNA simultaneously. M1 is comprised of two domains connected by a linker sequence. The C-terminal domain contains alpha-helical structure and appears to be involved in growth and virulence of the virus [, ].; GO: 0003723 RNA binding, 0005198 structural molecule activity
Probab=30.28 E-value=1.8e+02 Score=19.90 Aligned_cols=51 Identities=14% Similarity=0.002 Sum_probs=39.7
Q ss_pred ecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhhccC
Q psy16847 49 FAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYD 99 (208)
Q Consensus 49 ~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~ 99 (208)
.+--.+|++.+.+.++..++--+-.--.+-+-+.+++-+-..++.|..++|
T Consensus 38 sseq~~e~~eiAsq~r~~i~amRsiGt~~~~~~Gl~dDlle~Lq~yQk~MG 88 (95)
T PF08289_consen 38 SSEQAAEAMEIASQARSMIQAMRSIGTHPKNSEGLADDLLENLQAYQKRMG 88 (95)
T ss_pred chHhHHHHHHHHHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHHh
Confidence 334568999999999998888776655666677899988888888876654
No 65
>PF13066 DUF3929: Protein of unknown function (DUF3929)
Probab=30.10 E-value=80 Score=19.75 Aligned_cols=22 Identities=5% Similarity=0.110 Sum_probs=17.6
Q ss_pred cccccCCcEEEEEeCCEEEEEE
Q psy16847 2 EAVKQGSATVGLKNKTHAVIIA 23 (208)
Q Consensus 2 ~av~~G~tvigi~~~dgVVla~ 23 (208)
.|+.+-+|+|.|.|+|.|=+--
T Consensus 40 taidkqgtiisiac~divkvel 61 (65)
T PF13066_consen 40 TAIDKQGTIISIACNDIVKVEL 61 (65)
T ss_pred EEeccCCcEEEEEecceeeEEe
Confidence 3778889999999999876543
No 66
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=29.36 E-value=82 Score=28.28 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=33.7
Q ss_pred EEEEeCCCcEEEEECCCCceeec---eEEeeCCCcHHHHHHHHHhhCCCCCCCHHHHHHHHHHH
Q psy16847 109 VAGYDDAGPHIYQTCPSSNYYDV---KAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRA 169 (208)
Q Consensus 109 l~G~d~~g~~ly~vd~~G~~~~~---~~~a~G~~~~~~~~~Le~~~~~~~~~s~~eai~l~~~a 169 (208)
|+|.| -....+|..|..... +.||.|+|+ |||..-+. -+++++|.-+++.++
T Consensus 274 IGGQD---sK~I~ld~~G~V~dF~MNDKCAAGTGr-----FLE~mA~~-Lgi~leEl~~lA~~a 328 (432)
T TIGR02259 274 IGGQD---TKGIQIDDHGIVENFQMNDRCAAGCGR-----YLGYIADE-MNMGLHELGPLAMKS 328 (432)
T ss_pred eCCCc---eEEEEEcCCCcEeeeeecCcccccchH-----HHHHHHHH-cCCCHHHHHHHHhcC
Confidence 56666 468899999976643 688889876 34432221 257777766665554
No 67
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=28.50 E-value=2.3e+02 Score=21.39 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=21.9
Q ss_pred eeEEEEEeCCC-cEEEEECCCCceeeceEE
Q psy16847 106 GLLVAGYDDAG-PHIYQTCPSSNYYDVKAM 134 (208)
Q Consensus 106 ~~ll~G~d~~g-~~ly~vd~~G~~~~~~~~ 134 (208)
..+|.|+|++- --+-.+|-.|........
T Consensus 31 ~~lIVGiDPG~ttgiAildL~G~~l~l~S~ 60 (138)
T PF04312_consen 31 RYLIVGIDPGTTTGIAILDLDGELLDLKSS 60 (138)
T ss_pred CCEEEEECCCceeEEEEEecCCcEEEEEee
Confidence 45788999853 678889999998766443
No 68
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=26.92 E-value=83 Score=25.10 Aligned_cols=37 Identities=32% Similarity=0.567 Sum_probs=28.0
Q ss_pred EeeCCCcHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q psy16847 134 MAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRAL 170 (208)
Q Consensus 134 ~a~G~~~~~~~~~Le~~~~~~~~~s~~eai~l~~~al 170 (208)
.+.|.....+...+++.....++.+.++.++.|++.|
T Consensus 160 ~~LGy~~~ea~~al~~i~~~~~~~~~e~lir~aLk~l 196 (197)
T PRK14603 160 LALGFREAQVRSVVAELLAQNPEASAQTLIRKALKRL 196 (197)
T ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Confidence 4678888888888887653235778888888888765
No 69
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; GO: 0003677 DNA binding, 0005525 GTP binding; PDB: 2HGV_A 2GX5_D 2B0L_C 2B18_A.
Probab=25.32 E-value=3.4e+02 Score=21.34 Aligned_cols=67 Identities=7% Similarity=0.098 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeeceEEeeCC
Q psy16847 59 LARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGS 138 (208)
Q Consensus 59 l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~ 138 (208)
|+++.|+.-+.-+..-+.+++...+|..|++.+. -.+|-++..|....+... .+.
T Consensus 2 LLeKtRkIN~lLQ~~~~~~v~F~~ia~vL~dvl~------------------------aNvyIis~kGkiLGy~~~-~~~ 56 (177)
T PF06018_consen 2 LLEKTRKINRLLQKSAGEPVDFNDIAEVLSDVLE------------------------ANVYIISRKGKILGYSFI-DDF 56 (177)
T ss_dssp HHHHHHHHHHHHHSHTTSS--HHHHHHHHHHHHT------------------------SEEEEEETTSBEEEEE-S-S--
T ss_pred hHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhc------------------------CcEEEEeCCccEEEEecc-CCC
Confidence 4556665555445557899999999999999872 236777778887766543 445
Q ss_pred CcHHHHHHHHHh
Q psy16847 139 RSQSARTYLEKR 150 (208)
Q Consensus 139 ~~~~~~~~Le~~ 150 (208)
....+..+++..
T Consensus 57 ~~~~~~~~~~~~ 68 (177)
T PF06018_consen 57 ECDRMEEMLEEK 68 (177)
T ss_dssp --HHHHHHHHHT
T ss_pred CcHHHHHHHhcC
Confidence 556666666653
No 70
>COG4728 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.22 E-value=72 Score=22.81 Aligned_cols=31 Identities=29% Similarity=0.353 Sum_probs=26.2
Q ss_pred ceEEEcCceeEeecccHHHHHHHHHHHHHHH
Q psy16847 37 KIIVIDDHMGLSFAGLTADARILARFMRMEC 67 (208)
Q Consensus 37 Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~ 67 (208)
-+|.|-+..++.+.|..+|+..+.++.++..
T Consensus 9 ~~~~i~~~~gl~~v~~~~~~s~~~~k~~~~~ 39 (124)
T COG4728 9 IIFKIKDKLGLTFVSKSADMSIQVEKAERLI 39 (124)
T ss_pred EEEEEhhhcCcEEEEecchhHHHHHHHHHhh
Confidence 3688889999999999999999998887643
No 71
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional
Probab=25.04 E-value=1.2e+02 Score=24.30 Aligned_cols=39 Identities=23% Similarity=0.389 Sum_probs=30.4
Q ss_pred EEeeCCCcHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHH
Q psy16847 133 AMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALR 171 (208)
Q Consensus 133 ~~a~G~~~~~~~~~Le~~~~~~~~~s~~eai~l~~~al~ 171 (208)
-.+.|.....+...+++..+..++++.+|.++.|++.|.
T Consensus 162 L~~LGy~~~ea~~av~~~~~~~~~~~~e~lir~ALk~l~ 200 (203)
T PRK14602 162 LANLGYGEEEARPVLKEVLEEEPDLDVGGALRAALKALA 200 (203)
T ss_pred HHHcCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhc
Confidence 356799999999999887543367899988888888773
No 72
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=24.90 E-value=85 Score=21.28 Aligned_cols=54 Identities=20% Similarity=0.222 Sum_probs=25.9
Q ss_pred HHHHHHHhhCCC--CCCCHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeec--eeecCCCCc
Q psy16847 143 ARTYLEKRLADF--PEASLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVS--IHSTSTYPN 202 (208)
Q Consensus 143 ~~~~Le~~~~~~--~~~s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~--~~~~~~~~~ 202 (208)
+..+++..+... -.++.+||.+.+++.|..... +++--+++.+.+ ...+|.-|.
T Consensus 19 a~~~i~~~~~~~~~g~ls~eea~~~a~~~l~~~r~------~~~gY~fi~d~~g~~l~hp~~p~ 76 (95)
T PF08269_consen 19 AISLIESYYAQAQAGKLSEEEAQQQAREALRALRY------GGDGYFFIYDMDGVVLAHPSNPE 76 (95)
T ss_dssp HHHHTHHHHHC-STT-----TTHHHHHHHHHH--S------BTTB--EEE-TTSBEEEESS-GG
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcccc------CCCCeEEEEeCCCeEEEcCCCcc
Confidence 344444443321 358999999999999987753 234578888887 444444354
No 73
>COG0822 IscU NifU homolog involved in Fe-S cluster formation [Energy production and conversion]
Probab=23.88 E-value=3.3e+02 Score=20.68 Aligned_cols=54 Identities=17% Similarity=0.202 Sum_probs=40.1
Q ss_pred cEEE-EECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCCHHHHHHHH--HHHHHhh
Q psy16847 117 PHIY-QTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHG--LRALRDT 173 (208)
Q Consensus 117 ~~ly-~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s~~eai~l~--~~al~~~ 173 (208)
-.|| .+| .|.+...++-..|.+...+.+.+=..+- .+.+++||+++. ...+...
T Consensus 43 i~l~lkv~-~~~I~d~~F~~~GC~is~ASss~~te~v--~Gkti~EAl~i~~~~~~m~~~ 99 (150)
T COG0822 43 ITLYLKVD-NGVIEDAKFKGFGCAISIASSSMMTELV--KGKTLDEALKITEAFTDMAKE 99 (150)
T ss_pred EEEEEEEc-CCEEEEEEeeecCcHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHH
Confidence 4555 466 8888888999999988887766665544 589999999998 4444443
No 74
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=22.29 E-value=1.8e+02 Score=20.76 Aligned_cols=27 Identities=11% Similarity=0.268 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHcCC-CCCHHHH
Q psy16847 57 RILARFMRMECLNYKYAHKD-TLPVFRL 83 (208)
Q Consensus 57 ~~l~~~~~~~~~~~~~~~~~-~i~~~~l 83 (208)
..++..++..++.|++.+++ ++|.+.|
T Consensus 50 ~A~vkmV~sQ~~~YeLdh~~~~pSl~~L 77 (107)
T COG4537 50 EAVVKMVESQAEAYELDHNRLPPSLSDL 77 (107)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence 46778888889999999988 6666655
No 75
>PF01458 UPF0051: Uncharacterized protein family (UPF0051); InterPro: IPR000825 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents SufB and SufD proteins that form part of the SufBCD complex in the SUF system. No specific functions have been assigned to these proteins.; GO: 0016226 iron-sulfur cluster assembly; PDB: 1VH4_B 2ZU0_A 4DN7_A.
Probab=22.12 E-value=1.3e+02 Score=24.26 Aligned_cols=47 Identities=19% Similarity=0.175 Sum_probs=32.7
Q ss_pred cEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q psy16847 117 PHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRAL 170 (208)
Q Consensus 117 ~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s~~eai~l~~~al 170 (208)
|.|-- +..-. .-...+++|.=.+...-+|..+ .++.+||.++.+++|
T Consensus 183 P~LeI-~~~dV-~a~H~AtvG~idee~LFYL~SR-----Gl~~~eA~~Liv~gF 229 (229)
T PF01458_consen 183 PELEI-DEDDV-KASHGATVGQIDEEQLFYLMSR-----GLSEEEARKLIVKGF 229 (229)
T ss_dssp EEEEE--SSSE-EEEEEEEEEES-HHHHHHHHCT-----T--HHHHHHHHHHHH
T ss_pred EhHhc-ccCCc-EEEEeeEeecCCHHHHHHHHHc-----CCCHHHHHHHHHhhC
Confidence 55543 33322 3357888999999999999974 899999999999875
No 76
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=21.05 E-value=3.9e+02 Score=21.42 Aligned_cols=61 Identities=20% Similarity=0.224 Sum_probs=42.2
Q ss_pred cceeeEEEEEeCCCcEEEEECCCCceeec------eEEeeCCCcHHHHHHHHHhhCCCCCCCHHHHHHHHHHH
Q psy16847 103 YGVGLLVAGYDDAGPHIYQTCPSSNYYDV------KAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRA 169 (208)
Q Consensus 103 ~~v~~ll~G~d~~g~~ly~vd~~G~~~~~------~~~a~G~~~~~~~~~Le~~~~~~~~~s~~eai~l~~~a 169 (208)
.++..++....++|..++. . +..... ..-.+|.|..+.-.+|-...+ +.+++++++++..+
T Consensus 188 ~~~~~viit~G~~Ga~~~~--~-~~~~~~~~~~~~vvDttGAGDaF~ag~l~~l~~---g~~~~~al~~a~~~ 254 (265)
T cd01947 188 PFPRYLIVTEGELGAILYP--G-GRYNHVPAKKAKVPDSTGAGDSFAAGFIYGLLK---GWSIEEALELGAQC 254 (265)
T ss_pred ccCCEEEEEeCCCCeEEEE--C-CeeEECCCCCCCCCCCCCchHHHHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 3566677777666555543 2 222222 245789999999999998876 68999999988654
No 77
>KOG0083|consensus
Probab=20.94 E-value=91 Score=23.63 Aligned_cols=91 Identities=16% Similarity=0.157 Sum_probs=48.9
Q ss_pred cCCcEEEEEeCCEEEEEEEecCcccccccccceEEEcCceeEe----ecccHHHHHHHHHHHHHHHHHHH---------H
Q psy16847 6 QGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLS----FAGLTADARILARFMRMECLNYK---------Y 72 (208)
Q Consensus 6 ~G~tvigi~~~dgVVla~d~~~~~~l~~~~~Ki~~i~~~i~~~----~sG~~~D~~~l~~~~~~~~~~~~---------~ 72 (208)
.|.||+=|+++||.-++..=..+-+ .+.-+|+..+++.-+=. .+|- ++.|.....|. +
T Consensus 8 ~gktcllir~kdgafl~~~fistvg-id~rnkli~~~~~kvklqiwdtagq--------erfrsvt~ayyrda~alllly 78 (192)
T KOG0083|consen 8 TGKTCLLIRFKDGAFLAGNFISTVG-IDFRNKLIDMDDKKVKLQIWDTAGQ--------ERFRSVTHAYYRDADALLLLY 78 (192)
T ss_pred cCceEEEEEeccCceecCceeeeee-eccccceeccCCcEEEEEEeeccch--------HHHhhhhHhhhcccceeeeee
Confidence 5889999999999998864322222 23445666666543211 2332 22222222221 1
Q ss_pred HcCCCCCHHHHHHHHHHHHHHHhhccCCCccceeeEEEEE
Q psy16847 73 AHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGY 112 (208)
Q Consensus 73 ~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~ 112 (208)
.....-|++.+-..|+.+ |+|.+. .|.+++.|-
T Consensus 79 diankasfdn~~~wlsei-~ey~k~------~v~l~llgn 111 (192)
T KOG0083|consen 79 DIANKASFDNCQAWLSEI-HEYAKE------AVALMLLGN 111 (192)
T ss_pred ecccchhHHHHHHHHHHH-HHHHHh------hHhHhhhcc
Confidence 123345677777777764 457654 355555554
No 78
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.88 E-value=2e+02 Score=18.09 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhhCCCC
Q psy16847 141 QSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPND 177 (208)
Q Consensus 141 ~~~~~~Le~~~~~~~~~s~~eai~l~~~al~~~~~~d 177 (208)
+.+..-+.+... +.||.-|||++....|++-...|
T Consensus 14 Q~AVE~Iq~lMa--eGmSsGEAIa~VA~elRe~hk~~ 48 (60)
T COG3140 14 QKAVERIQELMA--EGMSSGEAIALVAQELRENHKGE 48 (60)
T ss_pred HHHHHHHHHHHH--ccccchhHHHHHHHHHHHHhccc
Confidence 344455555555 68999999999999999887665
No 79
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=20.75 E-value=1.8e+02 Score=22.01 Aligned_cols=36 Identities=22% Similarity=0.013 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeecee
Q psy16847 155 PEASLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVSIH 195 (208)
Q Consensus 155 ~~~s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~~ 195 (208)
+.++++.|.+++..++.++- ..+..+.|.|++.+.+
T Consensus 6 ~~Ls~e~a~~ii~aA~a~a~-----~~g~~VtvaVVD~~G~ 41 (141)
T COG3193 6 PVLSLELANKIIAAAVAEAQ-----QLGVPVTVAVVDAGGH 41 (141)
T ss_pred cccCHHHHHHHHHHHHHHHH-----HhCCceEEEEECCCCC
Confidence 67999999999999999885 2388999999999844
No 80
>PF01242 PTPS: 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007115 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) [] is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity [, ]. The function of the bacterial branch of the sequence lineage appears not to have been established.; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0046872 metal ion binding, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 3QNA_E 3QN9_A 3QN0_B 1Y13_C 3D7J_A 3I2B_J 2OBA_D 3M0N_A 2A0S_A 3LZE_A ....
Probab=20.64 E-value=2.2e+02 Score=20.40 Aligned_cols=46 Identities=11% Similarity=0.067 Sum_probs=28.8
Q ss_pred cccHHHHHHHHHHHHHHHHHH--HHHc-------CC-CCCHHHHHHHHHHHHHHHh
Q psy16847 50 AGLTADARILARFMRMECLNY--KYAH-------KD-TLPVFRLISIVGNKMQVCT 95 (208)
Q Consensus 50 sG~~~D~~~l~~~~~~~~~~~--~~~~-------~~-~i~~~~la~~l~~~~~~~t 95 (208)
.|+.-|+..+.+.++..+..+ ++.+ .. .+|.+.+|..+...+....
T Consensus 43 ~g~v~DF~~lk~~~~~i~~~lDh~~Ln~~~~~~~~~~~pT~E~lA~~i~~~l~~~l 98 (123)
T PF01242_consen 43 DGMVVDFGDLKKIIKEIDDQLDHKFLNEDDPEFDDINNPTAENLARWIFERLKEKL 98 (123)
T ss_dssp TSSSS-HHHHHHHHHHHHHHHTTEEGGHHSGCGCSSTS--HHHHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHHHhCcccccCCChhhhccCCCCHHHHHHHHHHHHHHHh
Confidence 577778888888887755433 2221 00 1789999999998876554
No 81
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=20.47 E-value=81 Score=25.24 Aligned_cols=62 Identities=18% Similarity=0.120 Sum_probs=42.5
Q ss_pred cEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeeceee
Q psy16847 117 PHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVSIHS 196 (208)
Q Consensus 117 ~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~~~ 196 (208)
|..+.+|.+|++.... =|++..++..|......|+ .....+++.|||-+.+.
T Consensus 5 P~~lllDtSgSM~Ge~---------------------------IealN~Glq~m~~~Lkqdp-~Ale~v~lsIVTF~~~a 56 (207)
T COG4245 5 PCYLLLDTSGSMIGEP---------------------------IEALNAGLQMMIDTLKQDP-YALERVELSIVTFGGPA 56 (207)
T ss_pred CEEEEEecCccccccc---------------------------HHHHHHHHHHHHHHHHhCh-hhhheeEEEEEEecCcc
Confidence 6777788888774221 1456667777777766775 78889999999999655
Q ss_pred cCCCCceeee
Q psy16847 197 TSTYPNVTYV 206 (208)
Q Consensus 197 ~~~~~~~~~~ 206 (208)
...-|+..-.
T Consensus 57 ~~~~pf~~~~ 66 (207)
T COG4245 57 RVIQPFTDAA 66 (207)
T ss_pred eEEechhhHh
Confidence 5555554433
No 82
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=20.28 E-value=1.4e+02 Score=17.49 Aligned_cols=17 Identities=35% Similarity=0.358 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHHHHhhC
Q psy16847 158 SLEEIVKHGLRALRDTL 174 (208)
Q Consensus 158 s~~eai~l~~~al~~~~ 174 (208)
|++||++.+.++|...+
T Consensus 30 t~eea~~~~~eal~~~l 46 (48)
T PF03681_consen 30 TLEEALENAKEALELWL 46 (48)
T ss_dssp SHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 78888888888887665
Done!