Query psy16847
Match_columns 208
No_of_seqs 116 out of 1064
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 23:35:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16847.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16847hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ryp_F 20S proteasome; multica 100.0 1.6E-49 5.4E-54 324.7 22.4 192 1-193 25-218 (233)
2 1ryp_A 20S proteasome; multica 100.0 3.8E-49 1.3E-53 324.3 23.2 190 1-194 23-223 (243)
3 1iru_F 20S proteasome; cell cy 100.0 7.3E-49 2.5E-53 326.1 22.9 193 1-193 26-218 (263)
4 1yar_A Proteasome alpha subuni 100.0 1.9E-48 6.4E-53 318.3 24.3 190 1-194 28-219 (233)
5 1iru_B 20S proteasome; cell cy 100.0 1.3E-48 4.4E-53 319.2 23.2 190 1-194 25-216 (233)
6 1ryp_C 20S proteasome; multica 100.0 5.3E-48 1.8E-52 317.6 24.8 191 1-194 25-221 (244)
7 1ryp_G 20S proteasome; multica 100.0 6E-48 2.1E-52 317.4 23.6 196 1-199 24-228 (244)
8 3nzj_F Proteasome component C1 100.0 4.2E-48 1.4E-52 324.7 21.7 189 1-192 28-221 (288)
9 1iru_A 20S proteasome; cell cy 100.0 1.3E-47 4.3E-52 315.8 24.0 193 1-195 29-225 (246)
10 3h4p_A Proteasome subunit alph 100.0 2.6E-48 8.8E-53 322.8 19.5 188 1-193 32-221 (264)
11 1iru_C 20S proteasome; cell cy 100.0 1.5E-47 5.2E-52 317.8 23.0 191 1-194 25-220 (261)
12 1iru_G 20S proteasome; cell cy 100.0 8.7E-48 3E-52 318.1 20.9 190 1-193 27-219 (254)
13 1ryp_D 20S proteasome; multica 100.0 3.3E-47 1.1E-51 312.4 22.8 187 1-193 22-216 (241)
14 1iru_E 20S proteasome; cell cy 100.0 2.7E-47 9.2E-52 312.9 21.8 190 1-194 28-224 (241)
15 1iru_N 20S proteasome; cell cy 100.0 1.8E-47 6.2E-52 309.7 20.5 190 1-193 2-195 (219)
16 1j2p_A Alpha-ring, proteasome 100.0 6E-47 2.1E-51 311.7 23.6 188 1-193 28-218 (246)
17 1ryp_E 20S proteasome; multica 100.0 2.5E-47 8.5E-52 313.2 20.5 190 1-194 20-218 (242)
18 1iru_D 20S proteasome; cell cy 100.0 4.7E-47 1.6E-51 312.8 21.0 188 1-194 23-215 (248)
19 1ryp_B 20S proteasome; multica 100.0 3.8E-46 1.3E-50 307.6 23.7 189 1-193 25-217 (250)
20 3mi0_A Proteasome subunit alph 100.0 3.3E-46 1.1E-50 307.3 23.0 183 1-194 21-217 (248)
21 1iru_M 20S proteasome; cell cy 100.0 4.7E-46 1.6E-50 300.1 22.4 189 3-198 5-206 (213)
22 1ryp_N 20S proteasome; multica 100.0 1.4E-46 4.9E-51 307.2 19.2 188 1-193 2-203 (233)
23 1yar_H Proteasome beta subunit 100.0 6.2E-46 2.1E-50 300.4 22.2 184 2-193 3-190 (217)
24 1ryp_H 20S proteasome; multica 100.0 8.4E-46 2.9E-50 297.1 22.2 186 1-195 3-192 (205)
25 3nzj_H Proteasome component PU 100.0 9.2E-46 3.1E-50 306.7 22.4 186 1-194 23-211 (261)
26 1ryp_M 20S proteasome; multica 100.0 1.5E-45 5.1E-50 299.1 21.8 191 3-200 5-217 (222)
27 3h4p_a Proteasome subunit beta 100.0 1.7E-45 5.9E-50 298.2 21.6 181 7-194 1-186 (219)
28 1ryp_K 20S proteasome; multica 100.0 3.2E-45 1.1E-49 292.1 22.5 188 8-200 2-195 (198)
29 1j2q_H Proteasome beta subunit 100.0 8.2E-45 2.8E-49 290.6 23.9 180 8-194 1-184 (202)
30 1iru_J 20S proteasome; cell cy 100.0 6.2E-45 2.1E-49 292.0 22.9 188 4-198 5-198 (205)
31 1ryp_J 20S proteasome; multica 100.0 1.4E-44 4.8E-49 289.7 23.1 187 3-197 4-196 (204)
32 1g0u_M Proteasome component PR 100.0 2.1E-45 7.1E-50 305.8 18.6 188 1-193 35-236 (266)
33 3unf_H Proteasome subunit beta 100.0 9.8E-45 3.4E-49 296.4 21.5 178 8-193 1-181 (234)
34 1iru_H 20S proteasome; cell cy 100.0 1.4E-44 4.7E-49 290.0 20.9 180 8-195 1-184 (205)
35 3nzj_K Proteasome component PR 100.0 1.8E-44 6.2E-49 302.4 20.9 190 2-198 70-264 (287)
36 1q5q_A Proteasome alpha-type s 100.0 2.9E-44 9.8E-49 297.8 20.9 182 1-193 21-214 (259)
37 1q5r_H Proteasome beta-type su 100.0 4.8E-44 1.7E-48 300.8 22.5 190 1-194 59-266 (294)
38 1iru_L 20S proteasome; cell cy 100.0 5.5E-44 1.9E-48 286.3 21.7 180 8-194 1-183 (204)
39 1ryp_I 20S proteasome; multica 100.0 9.1E-44 3.1E-48 288.7 22.8 179 8-194 1-182 (222)
40 1ryp_L 20S proteasome; multica 100.0 1.2E-43 4E-48 286.0 22.4 180 8-194 1-184 (212)
41 1iru_K 20S proteasome; cell cy 100.0 1.5E-43 5.3E-48 283.0 22.0 190 8-202 2-196 (201)
42 1iru_I 20S proteasome; cell cy 100.0 3.7E-43 1.3E-47 287.2 22.1 179 8-194 1-182 (234)
43 1q5q_H Proteasome beta-type su 100.0 1.2E-42 4E-47 284.4 21.5 183 8-194 1-201 (235)
44 2jay_A Proteasome; hydrolase; 100.0 1.7E-42 6E-47 291.0 20.5 187 4-194 54-258 (291)
45 3unf_N Proteasome subunit beta 100.0 5E-42 1.7E-46 273.8 18.4 178 8-195 1-183 (199)
46 2z3b_A ATP-dependent protease 100.0 3E-37 1E-41 242.8 17.5 168 5-191 3-180 (180)
47 1g3k_A ATP-dependent protease 100.0 6E-36 2E-40 234.1 16.8 166 8-191 1-173 (174)
48 1m4y_A ATP-dependent protease 100.0 9.2E-36 3.2E-40 232.4 17.6 165 8-190 1-171 (171)
49 4gof_A Small glutamine-rich te 35.8 44 0.0015 19.9 3.4 35 143-178 9-45 (52)
50 4asv_A Small glutamine-rich te 31.9 63 0.0021 21.6 4.0 35 143-178 26-62 (92)
51 2lxb_A Small glutamine-rich te 29.8 78 0.0027 20.2 4.1 35 143-178 14-50 (74)
52 1ixs_A Holliday junction DNA h 23.5 48 0.0016 20.3 2.1 34 135-168 26-59 (62)
53 4eo3_A Bacterioferritin comigr 21.1 28 0.00095 28.6 0.8 34 117-150 103-137 (322)
No 1
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=1.6e-49 Score=324.71 Aligned_cols=192 Identities=45% Similarity=0.700 Sum_probs=183.4
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCcccccccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPV 80 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 80 (208)
+||+++|+|+|||+++||||||+|+|.++++.++.+||++|++|++|+++|+.+|++.+.++++.+++.|++.+++++|+
T Consensus 25 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 104 (233)
T 1ryp_F 25 LEAIKQGSVTVGLRSNTHAVLVALKRNADELSSYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAV 104 (233)
T ss_dssp HHHHHTSCCEEEEECSSEEEEEEECCCSSTTBCCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHcCCCEEEEEcCCEEEEEEEeccccccccccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 47899999999999999999999999999988888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCC--C
Q psy16847 81 FRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA--S 158 (208)
Q Consensus 81 ~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~--s 158 (208)
+.+++.+++++|.|||+.++|||++++||||||++||+||.+||+|++.+++++|+|++++.++++||+.|+++++| +
T Consensus 105 ~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~m~~s 184 (233)
T 1ryp_F 105 ERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGN 184 (233)
T ss_dssp HHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECTTSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeCCcCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHHhccccccCCC
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999822289 9
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeec
Q psy16847 159 LEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVS 193 (208)
Q Consensus 159 ~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~ 193 (208)
++||+++++++|+.++ ||...++.+++|++|+++
T Consensus 185 ~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~ 218 (233)
T 1ryp_F 185 PDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKD 218 (233)
T ss_dssp HHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECC
Confidence 9999999999999999 773368999999999998
No 2
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=3.8e-49 Score=324.27 Aligned_cols=190 Identities=28% Similarity=0.377 Sum_probs=182.3
Q ss_pred Cccccc-CCcEEEEEeCCEEEEEEEecCccccc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy16847 1 MEAVKQ-GSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDT 77 (208)
Q Consensus 1 ~~av~~-G~tvigi~~~dgVVla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 77 (208)
+||+++ |+|+|||+++||||||+|+|.+.++. ++.+||++|++|++|+++|+.+|++.+.++++.+++.|++.++++
T Consensus 23 ~~av~~~Gtt~vgi~~~dgVvlaad~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~~~~~~~~ 102 (243)
T 1ryp_A 23 FKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYD 102 (243)
T ss_dssp HHHTTTTCCCEEEEECSSEEEEEEECCCCCTTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhcCCCcEEEEEeCCEEEEEEEecCCccccCCCcCCceEEECCCEEEEEEecHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 478999 99999999999999999999997664 578999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeC-CCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCC-
Q psy16847 78 LPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFP- 155 (208)
Q Consensus 78 i~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~-~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~- 155 (208)
+|++.+++++++.+|.|++++++|||++++||||||+ .||+||++||+|++.+++++|+|++++.++++||+.|+ +
T Consensus 103 ~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~a~G~gs~~a~~~Le~~~~--~~ 180 (243)
T 1ryp_A 103 MPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFK--KS 180 (243)
T ss_dssp CCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHH--HH
T ss_pred CCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEEEECCCcHHHHHHHHHHhh--hc
Confidence 9999999999999999999999999999999999996 67999999999999999999999999999999999998 6
Q ss_pred ------CCCHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeece
Q psy16847 156 ------EASLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVSI 194 (208)
Q Consensus 156 ------~~s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~ 194 (208)
+|+++||++++++||..+++|| .++++++|++|+++.
T Consensus 181 ~~~~~~~ms~eea~~l~~~al~~~~~rd--~s~~~iev~vi~~~g 223 (243)
T 1ryp_A 181 KIDHINEESWEKVVEFAITHMIDALGTE--FSKNDLEVGVATKDK 223 (243)
T ss_dssp CSSSCCCSSHHHHHHHHHHHHHHHHTCC--CCTTSEEEEEEETTE
T ss_pred ccccccCCCHHHHHHHHHHHHHHHhccc--CCCCcEEEEEEECCC
Confidence 9999999999999999999998 589999999999984
No 3
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=7.3e-49 Score=326.06 Aligned_cols=193 Identities=65% Similarity=1.048 Sum_probs=184.8
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCcccccccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPV 80 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 80 (208)
+||+++|+|+|||+++||||||+|+|.++++.++.+||++|++|++|+++|+.+|++.+.++++.+++.|++.+++++++
T Consensus 26 ~~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~i~v 105 (263)
T 1iru_F 26 MEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPV 105 (263)
T ss_dssp HHHHHHSCCEEEEECSSEEEEEEECCCSSTTBCCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHHHHcCCcEEEEEeCCEEEEEEecccccccccchhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 47899999999999999999999999999988888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCCHH
Q psy16847 81 FRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLE 160 (208)
Q Consensus 81 ~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s~~ 160 (208)
+.+++++++++|.|++++++|||++++||||||++||+||.+||+|++.+++++|+|++++.++++||+.|+++++|+++
T Consensus 106 ~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~ms~e 185 (263)
T 1iru_F 106 SRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLN 185 (263)
T ss_dssp HHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECSSSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHhhcccccccceEEEEEEEEcCCCCEEEEECCCCCEEEeeEEEcCcccHHHHHHHHHHhcccCCCCHH
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999832399999
Q ss_pred HHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeec
Q psy16847 161 EIVKHGLRALRDTLPNDSELTTKVRYSYVLTVS 193 (208)
Q Consensus 161 eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~ 193 (208)
||++++++||+.+++||..+++.+++|++|+++
T Consensus 186 ea~~la~~al~~~~~rd~~~sg~~iev~vi~~~ 218 (263)
T 1iru_F 186 ELVKHGLRALRETLPAEQDLTTKNVSIGIVGKD 218 (263)
T ss_dssp HHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETT
T ss_pred HHHHHHHHHHHHHHhccccCCCCcEEEEEEECC
Confidence 999999999999999983378999999999998
No 4
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=1.9e-48 Score=318.27 Aligned_cols=190 Identities=33% Similarity=0.465 Sum_probs=182.7
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCccccc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTL 78 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 78 (208)
+||+++|+|+|||+++||||||+|+|.++++. ++.+||++|++|++|++||+.+|++.+.++++.+++.|++.+++++
T Consensus 28 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 107 (233)
T 1yar_A 28 REAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLV 107 (233)
T ss_dssp HHHHTTSCCEEEEEETTEEEEEECCCCCCTTBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHhcCCcEEEEEECCEEEEEEeccCCcccccccccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 37899999999999999999999999999874 5779999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCC
Q psy16847 79 PVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEAS 158 (208)
Q Consensus 79 ~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s 158 (208)
+++.+++++++.+|.|++++++|||++++||||||++||+||.+||+|++.+++++|+|+|++.++++||+.|+ ++|+
T Consensus 108 ~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~--~~~s 185 (233)
T 1yar_A 108 NIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYK--ENLP 185 (233)
T ss_dssp CHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSCEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCC--TTCC
T ss_pred CHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeCCCCEEEEECCCCCEEeeeEEEEcCCcHHHHHHHHHHhc--cCCC
Confidence 99999999999999999998999999999999999888999999999999999999999999999999999999 7999
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeece
Q psy16847 159 LEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVSI 194 (208)
Q Consensus 159 ~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~ 194 (208)
++||++++++||+.+.+|| .++++++|++|+++.
T Consensus 186 ~eea~~la~~al~~~~~~d--~s~~~i~v~vi~~~~ 219 (233)
T 1yar_A 186 EKEAVTLGIKALKSSLEEG--EELKAPEIASITVGN 219 (233)
T ss_dssp HHHHHHHHHHHHHHTSCSS--CCCCCCEEEEEETTS
T ss_pred HHHHHHHHHHHHHHHhhcc--CCCCcEEEEEEECCC
Confidence 9999999999999999998 379999999999984
No 5
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=1.3e-48 Score=319.23 Aligned_cols=190 Identities=28% Similarity=0.471 Sum_probs=182.5
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCccccc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTL 78 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 78 (208)
+||+++|+|+|||+++||||||+|+|.+.++. ++.+||++|++|++|+++|+.+|++.+.++++.+++.|++.+++++
T Consensus 25 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 104 (233)
T 1iru_B 25 LAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPI 104 (233)
T ss_dssp HHHHHTSCCEEEEECSSCEEEEEECCCCCSSBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHcCCcEEEEEeCCEEEEEEEecCCccccccccCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 47899999999999999999999999997764 5789999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCC
Q psy16847 79 PVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEAS 158 (208)
Q Consensus 79 ~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s 158 (208)
+++.+++++++.+|.|++++++|||++++||||||++||+||.+||+|++.++++.|+|++++.++++||+.|+ ++|+
T Consensus 105 ~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~--~~ms 182 (233)
T 1iru_B 105 PTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYN--EDLE 182 (233)
T ss_dssp CHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSSSEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCC--TTCC
T ss_pred CHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeCCCCeEEEECCCCCEEEeeEEEECCCCHHHHHHHHHHhc--cCCC
Confidence 99999999999999999998899999999999999888999999999999999999999999999999999999 7999
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeece
Q psy16847 159 LEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVSI 194 (208)
Q Consensus 159 ~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~ 194 (208)
++||++++++||+.+.+|| .++++++|++|+++.
T Consensus 183 ~eea~~la~~al~~~~~~d--~sg~~i~v~vi~~~g 216 (233)
T 1iru_B 183 LEDAIHTAILTLKESFEGQ--MTEDNIEVGICNEAG 216 (233)
T ss_dssp HHHHHHHHHHHHHTTCCSC--CCSSSEEEEEEETTE
T ss_pred HHHHHHHHHHHHHHHhhcc--CCCCCEEEEEEECCC
Confidence 9999999999999999998 579999999999984
No 6
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=5.3e-48 Score=317.61 Aligned_cols=191 Identities=27% Similarity=0.441 Sum_probs=182.9
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCccccc---ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDT 77 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 77 (208)
+||+++|+|+|||+++||||||+|+|.++++. ++.+||++|++|++|++||+.+|++.+.++++.+++.|++.++++
T Consensus 25 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 104 (244)
T 1ryp_C 25 LESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNED 104 (244)
T ss_dssp HHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 47899999999999999999999999999974 478999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEe-CCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCC
Q psy16847 78 LPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 156 (208)
Q Consensus 78 i~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d-~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~ 156 (208)
++++.+++++++++|.|+++.++|||++++|||||| ++||+||.+||+|++.+++++|+|+|++.++++||+.|+ ++
T Consensus 105 ~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~ 182 (244)
T 1ryp_C 105 IPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYK--DD 182 (244)
T ss_dssp CCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCC--TT
T ss_pred CCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEEEECCCcHHHHHHHHHhhh--cC
Confidence 999999999999999999998999999999999999 678999999999999999999999999999999999999 89
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEe--ece
Q psy16847 157 ASLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLT--VSI 194 (208)
Q Consensus 157 ~s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~--~~~ 194 (208)
|+++||++++++||+.+.+||. .++.+++|++|+ ++.
T Consensus 183 ms~eea~~la~~al~~~~~rd~-~sg~~i~v~vi~~~~~~ 221 (244)
T 1ryp_C 183 MKVDDAIELALKTLSKTTDSSA-LTYDRLEFATIRKGAND 221 (244)
T ss_dssp CCHHHHHHHHHHHHHHHCSSSS-CCGGGEEEEEEECCSSS
T ss_pred CCHHHHHHHHHHHHHHHhcccc-CCCCcEEEEEEEeecCC
Confidence 9999999999999999999963 689999999999 774
No 7
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=6e-48 Score=317.37 Aligned_cols=196 Identities=28% Similarity=0.386 Sum_probs=184.5
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCccccc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTL 78 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 78 (208)
+||+++|+|+|||+++||||||+|+|.++++. ...+||++|++|++|++||+.+|++.+.++++.+++.|++.+++++
T Consensus 24 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 103 (244)
T 1ryp_G 24 VKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPI 103 (244)
T ss_dssp HHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTTTSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHCCCCEEEEEECCEEEEEEecccCCCCccccccCceEEecCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 47899999999999999999999999999974 4469999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHh---hCCCC
Q psy16847 79 PVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKR---LADFP 155 (208)
Q Consensus 79 ~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~---~~~~~ 155 (208)
+++.+++++++.+|.||+++++|||++++||||||++||+||.+||+|++.+++++|+|++++.++++||+. |+ +
T Consensus 104 ~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~--~ 181 (244)
T 1ryp_G 104 PIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHP--E 181 (244)
T ss_dssp CHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCT--T
T ss_pred CHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeCCcCEEEEECCCCCEEEeeEEEECCChHHHHHHHHHhHhhcC--C
Confidence 999999999999999999988899999999999998889999999999999999999999999999999997 98 7
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEee---c-eeecCC
Q psy16847 156 EASLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTV---S-IHSTST 199 (208)
Q Consensus 156 ~~s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~---~-~~~~~~ 199 (208)
+|+++||++++++||+.+++|| ..++.+++|++|++ + ++...+
T Consensus 182 ~ms~eea~~la~~al~~~~~~d-~~s~~~iev~vi~~~~~~g~~~~~~ 228 (244)
T 1ryp_G 182 GLSAREAVKQAAKIIYLAHEDN-KEKDFELEISWCSLSETNGLHKFVK 228 (244)
T ss_dssp CCCHHHHHHHHHHHHHHHGGGG-TTSCEEEEEEEEETTTTTTSEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHhcc-CCCCCeEEEEEEEecCCCCeeeeCh
Confidence 9999999999999999999998 47899999999997 5 454444
No 8
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=4.2e-48 Score=324.66 Aligned_cols=189 Identities=28% Similarity=0.389 Sum_probs=182.3
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCccccc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTL 78 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 78 (208)
+||+++|+|+|||+++||||||+|+|.++++. ...+||++|++|++|+++|+.+|++.|+++++.+++.|++.+++++
T Consensus 28 ~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~~~~~~~i 107 (288)
T 3nzj_F 28 VKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPI 107 (288)
T ss_dssp HHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCTTCSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHhcCCcEEEEEECCEEEEEEcCCcccCCccccccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHHHHHHHHcCCcC
Confidence 47999999999999999999999999999975 4679999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHh---hCCCC
Q psy16847 79 PVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKR---LADFP 155 (208)
Q Consensus 79 ~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~---~~~~~ 155 (208)
+++.+++++++++|.||+++++|||++++||||||++||+||++||+|++.+++++|+|++++.++++||+. |+ +
T Consensus 108 ~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Lek~~~~~~--~ 185 (288)
T 3nzj_F 108 PIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHP--E 185 (288)
T ss_dssp CHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCT--T
T ss_pred CHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCCCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHHhccccC--C
Confidence 999999999999999999989999999999999999899999999999999999999999999999999999 87 8
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEee
Q psy16847 156 EASLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTV 192 (208)
Q Consensus 156 ~~s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~ 192 (208)
+|+++||++++++||..+++|| ..++.+++|++|++
T Consensus 186 ~ms~eEAv~la~~al~~a~~~~-~~~~~~iev~vIt~ 221 (288)
T 3nzj_F 186 GLSAREAVKQAAKIIYLAHEDN-KEKDFELEISWCSL 221 (288)
T ss_dssp CCCHHHHHHHHHHHHHHHGGGG-TTSEEEEEEEEEET
T ss_pred CCCHHHHHHHHHHHHHHHHhcc-cCCCCeEEEEEEEe
Confidence 9999999999999999999988 57899999999998
No 9
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=1.3e-47 Score=315.78 Aligned_cols=193 Identities=28% Similarity=0.450 Sum_probs=182.5
Q ss_pred Cccccc-CCcEEEEEeCCEEEEEEEecCccccc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy16847 1 MEAVKQ-GSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDT 77 (208)
Q Consensus 1 ~~av~~-G~tvigi~~~dgVVla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 77 (208)
+||+++ |+|+|||+++||||||+|+|.+.++. ++.+||++|++|++|+++|+.+|++.+.++++.+++.|++.++++
T Consensus 29 ~~av~~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 108 (246)
T 1iru_A 29 FKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYE 108 (246)
T ss_dssp HHHHHTTCCEEEEEECSSEEEEEEECCCCCSSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhcCCCCEEEEEeCCEEEEEEeecCCCcccCCCccCceEEECCCEEEEEeccHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 378888 99999999999999999999997764 678999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeC-CCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCC
Q psy16847 78 LPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 156 (208)
Q Consensus 78 i~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~-~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~ 156 (208)
++++.+++.+++++|.|+++++.|||++++||||||+ .||+||.+||+|++.+++++|+|++++.++++||+.|++.++
T Consensus 109 ~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~ 188 (246)
T 1iru_A 109 IPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFD 188 (246)
T ss_dssp CCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEEETTHHHHHHHHHHHTTSCCC
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEEEeeEEEECCCcHHHHHHHHHhhcccCC
Confidence 9999999999999999999988999999999999996 679999999999999999999999999999999999992229
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeecee
Q psy16847 157 ASLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVSIH 195 (208)
Q Consensus 157 ~s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~~ 195 (208)
|+++||++++++||+.+.+|| .++++++|++|+++..
T Consensus 189 ms~eea~~la~~al~~~~~rd--~sg~~i~v~vi~~~g~ 225 (246)
T 1iru_A 189 WTFEQTVETAITCLSTVLSID--FKPSEIEVGVVTVENP 225 (246)
T ss_dssp CCHHHHHHHHHHHHHHHTTCC--CCTTSEEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHHhccc--CCCCcEEEEEEECCCC
Confidence 999999999999999999998 6899999999999853
No 10
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.6e-48 Score=322.80 Aligned_cols=188 Identities=30% Similarity=0.442 Sum_probs=181.0
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCccccc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTL 78 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 78 (208)
+||+++|+|+|||+++||||||+|+|.++++. ++.+||++|++|++|+++|+.+|++.++++++.+++.|++.+++++
T Consensus 32 ~~av~~Gtt~vgi~~~dgVVlaaD~r~~~~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~~~~i 111 (264)
T 3h4p_A 32 REAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEI 111 (264)
T ss_dssp HHHHHHSCCEEEECCSSEEEEEEECCCCSTTBCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHHHHHHHTTCSCC
T ss_pred HHHHhcCCcEEEEEECCEEEEEEecCccCCccccCccccEEEecCcEEEEeccchHHHHHHHHHHHHHHHhhHHhcCCCC
Confidence 47899999999999999999999999999874 6889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCC
Q psy16847 79 PVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEAS 158 (208)
Q Consensus 79 ~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s 158 (208)
+++.+++++++++|.|++++++|||++++||||||++||+||.+||+|++.+++++|+|++++.++++||+.|+ ++|+
T Consensus 112 ~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~~gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~ms 189 (264)
T 3h4p_A 112 SIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYR--DDIT 189 (264)
T ss_dssp CHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEETTEEEEEEECTTCCCEEESEEEESTTHHHHTTTHHHHCC--TTCC
T ss_pred CHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeCCcCEEEEECCCceEEecCeEEECCCHHHHHHHHHHhcc--CCCC
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeec
Q psy16847 159 LEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVS 193 (208)
Q Consensus 159 ~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~ 193 (208)
++||++++++||..++++ .++++++|++|+++
T Consensus 190 ~eea~~la~~al~~a~~~---~sg~~iev~vi~~~ 221 (264)
T 3h4p_A 190 LDEGLELAITALTKANED---IKPENVDVCIITVK 221 (264)
T ss_dssp SHHHHHHHHHHHHHHSSS---CCTTSEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHhc---cCCCeEEEEEEEeC
Confidence 999999999999999965 69999999999975
No 11
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=1.5e-47 Score=317.84 Aligned_cols=191 Identities=28% Similarity=0.422 Sum_probs=183.0
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCccccc---ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDT 77 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 77 (208)
+||+++|+|+|||+++||||||+|+|.++++. .+.+||++|++|++|++||+.+|++.+.++++.+++.|++.++++
T Consensus 25 ~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 104 (261)
T 1iru_C 25 MEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEP 104 (261)
T ss_dssp HHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 47899999999999999999999999999975 358999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeC-CCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCC-
Q psy16847 78 LPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFP- 155 (208)
Q Consensus 78 i~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~-~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~- 155 (208)
++++.+++.+++++|.|++++++|||++++||||||+ .||+||.+||+|++.+++++|+|+|++.++++||+.|+ +
T Consensus 105 ~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~ 182 (261)
T 1iru_C 105 IPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK--EG 182 (261)
T ss_dssp CCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEEEESTTTTHHHHHHHHHCC--TT
T ss_pred CCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeeeeEEeCcccHHHHHHHHHhhc--cC
Confidence 9999999999999999999988999999999999995 67999999999999999999999999999999999999 7
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeece
Q psy16847 156 EASLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVSI 194 (208)
Q Consensus 156 ~~s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~ 194 (208)
+|+++||++++++||..+.+|| ..++.+++|++|+++.
T Consensus 183 ~ms~eeA~~la~~al~~~~~~d-~~sg~~i~v~vi~~~~ 220 (261)
T 1iru_C 183 EMTLKSALALAIKVLNKTMDVS-KLSAEKVEIATLTREN 220 (261)
T ss_dssp CCCHHHHHHHHHHHHHHSSSCT-TCCSTTCEEEEEECCS
T ss_pred CCCHHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEEcCC
Confidence 9999999999999999999998 5899999999999984
No 12
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=8.7e-48 Score=318.14 Aligned_cols=190 Identities=27% Similarity=0.340 Sum_probs=181.8
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCccccc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTL 78 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 78 (208)
+||+++|+|+|||+++||||||+|+|.++++. ++.+||++|++|++|+++|+.+|++.+.++++.+++.|++.+++++
T Consensus 27 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 106 (254)
T 1iru_G 27 MKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNI 106 (254)
T ss_dssp HHHHHTSCCEEEEECSSBEEEEEEEECSCTTBCTTTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHhcCCCEEEEEECCEEEEEEecccCCCCcCcCcCCcEEEECCCEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 47899999999999999999999999999975 5789999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEe-CCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCC
Q psy16847 79 PVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA 157 (208)
Q Consensus 79 ~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d-~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~ 157 (208)
|++.+++++++++|.|++++++|||++++|||||| +.||+||.+||+|++.+++++|+|++++.++++||+.|+ ++|
T Consensus 107 ~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~m 184 (254)
T 1iru_G 107 PLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQM--KEM 184 (254)
T ss_dssp CHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHTTSCG--GGC
T ss_pred CHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeeeeEEecCccHHHHHHHHHhcc--CCC
Confidence 99999999999999999998899999999999999 678999999999999999999999999999999999987 799
Q ss_pred CHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeec
Q psy16847 158 SLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVS 193 (208)
Q Consensus 158 s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~ 193 (208)
+++||+++++++|+.+.++| ..++.+++|++|+++
T Consensus 185 s~eea~~la~~al~~~~~~~-~~~~~~iev~vi~~~ 219 (254)
T 1iru_G 185 TCRDIVKEVAKIIYIVHDEV-KDKAFELELSWVGEL 219 (254)
T ss_dssp CHHHHHHHHHHHHHHHSCSS-SSCCEEEEEEECBTT
T ss_pred CHHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEEcC
Confidence 99999999999999999887 358999999999987
No 13
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=3.3e-47 Score=312.36 Aligned_cols=187 Identities=36% Similarity=0.505 Sum_probs=179.5
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCccccc---ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDT 77 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 77 (208)
+||+++|+|+|||+++||||||+|+|.++++. ++.+||++|++|++|+++|+.+|++.+.++++.+++.|++.++++
T Consensus 22 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 101 (241)
T 1ryp_D 22 LEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDP 101 (241)
T ss_dssp HHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 47899999999999999999999999999974 378999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeC--CCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhh---C
Q psy16847 78 LPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD--AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRL---A 152 (208)
Q Consensus 78 i~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~--~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~---~ 152 (208)
++++.+++++++.+|.|+|++++|||++++||||||+ .||+||.+||+|++.++++.|+|++++.++++||+.| +
T Consensus 102 ~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~ 181 (241)
T 1ryp_D 102 VTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKE 181 (241)
T ss_dssp CCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEESTTHHHHHHHHHTTCCTTS
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeEEECCCcHHHHHHHHHhhhccc
Confidence 9999999999999999999988999999999999997 7899999999999999999999999999999999999 6
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeec
Q psy16847 153 DFPEASLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVS 193 (208)
Q Consensus 153 ~~~~~s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~ 193 (208)
++|+++||++++++||..+.+ .++++++|++|+++
T Consensus 182 --~~ms~eea~~l~~~al~~~~~----~sg~~i~v~vi~~~ 216 (241)
T 1ryp_D 182 --PPATVEECVKLTVRSLLEVVQ----TGAKNIEITVVKPD 216 (241)
T ss_dssp --CCCSHHHHHHHHHHHHHHHHC----SCSTTEEEEEEETT
T ss_pred --CCCCHHHHHHHHHHHHHHHhc----CCCCcEEEEEEECC
Confidence 899999999999999999983 68999999999998
No 14
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=2.7e-47 Score=312.92 Aligned_cols=190 Identities=29% Similarity=0.445 Sum_probs=182.2
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCccccc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTL 78 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 78 (208)
+||+++|+|+|||+++||||||+|+|.++++. ++.+||++|++|++|++||+.+|++.+.++++.+++.|++.+++++
T Consensus 28 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 107 (241)
T 1iru_E 28 IEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETM 107 (241)
T ss_dssp HHHHTTSCCEEEEEETTEEEEEEECCCCCTTBCTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHcCCcEEEEEcCCEEEEEEecccCCcCcCccccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 47899999999999999999999999999974 5789999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccC-----CCccceeeEEEEEeCCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCC
Q psy16847 79 PVFRLISIVGNKMQVCTQRYD-----KRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLAD 153 (208)
Q Consensus 79 ~~~~la~~l~~~~~~~t~~~~-----~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~ 153 (208)
+++.+++.+++++|.|+++++ +|||++++||||||++||+||.+||+|++.++++.|+|+|++.++++||+.|+
T Consensus 108 ~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~- 186 (241)
T 1iru_E 108 TVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYH- 186 (241)
T ss_dssp CHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeCCCCEEEEECCCCcEEecceEEECCCcHHHHHHHHHHhc-
Confidence 999999999999999999888 89999999999999878999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeece
Q psy16847 154 FPEASLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVSI 194 (208)
Q Consensus 154 ~~~~s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~ 194 (208)
++|+++||++++++||..+.+| ..++.+++|++|+++.
T Consensus 187 -~~ms~eea~~la~~al~~~~~~--~~sg~~i~v~vi~~~~ 224 (241)
T 1iru_E 187 -KSMTLKEAIKSSLIILKQVMEE--KLNATNIELATVQPGQ 224 (241)
T ss_dssp -TTCCHHHHHHHHHHHHHHHCSS--CCCTTSEEEEEECSSS
T ss_pred -cCCCHHHHHHHHHHHHHHHhhc--cCCCCCEEEEEEECCC
Confidence 8999999999999999999988 3789999999999984
No 15
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=1.8e-47 Score=309.69 Aligned_cols=190 Identities=18% Similarity=0.176 Sum_probs=179.1
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCccc-cc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHH-HcCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKY-AHKD 76 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~ 76 (208)
+||+++|+|+|||+++||||||+|+|.+.+ +. ++.+||++|++|++|+++|..+|++.+.++++.+++.|++ .+++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (219)
T 1iru_N 2 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH 81 (219)
T ss_dssp CSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 589999999999999999999999999986 32 6889999999999999999999999999999999999998 9999
Q ss_pred CCCHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCC
Q psy16847 77 TLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 156 (208)
Q Consensus 77 ~i~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~ 156 (208)
+++++.+++++++.+ |++++++|||++++||||||+.||+||.+||+|++.++++.|+|+|++.++++||+.|++.++
T Consensus 82 ~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~ 159 (219)
T 1iru_N 82 SYSPRAIHSWLTRAM--YSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPV 159 (219)
T ss_dssp CCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEEETTEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSC
T ss_pred CCCHHHHHHHHHHHH--HHhcccCCCceEEEEEEEEECCCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCCC
Confidence 999999999999998 667777899999999999998889999999999999999999999999999999999992229
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeec
Q psy16847 157 ASLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVS 193 (208)
Q Consensus 157 ~s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~ 193 (208)
|+++||++++++||..+.+|| ..++++++|++|+++
T Consensus 160 mt~eea~~l~~~al~~~~~~d-~~sg~~i~v~vi~~~ 195 (219)
T 1iru_N 160 LSQTEARDLVERCMRVLYYRD-ARSYNRFQTATVTEK 195 (219)
T ss_dssp CCHHHHHHHHHHHHHHHHHHB-TTCCSCEEEEEEETT
T ss_pred CCHHHHHHHHHHHHHHHHHhc-CcCCCcEEEEEEcCC
Confidence 999999999999999999999 479999999999998
No 16
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=6e-47 Score=311.73 Aligned_cols=188 Identities=31% Similarity=0.417 Sum_probs=180.5
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCccccc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTL 78 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 78 (208)
+||+++|+|+|||+++||||||+|+|.+.++. ++.+||++|++|++|+++|..+|++.+.++++.+++.|++.+++++
T Consensus 28 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 107 (246)
T 1j2p_A 28 REAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPI 107 (246)
T ss_dssp HHHHHTSCCEEEEEETTEEEEEEECCCSCTTBCGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHcCCcEEEEEECCEEEEEEeccCCccccccCccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 37899999999999999999999999999874 5789999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCC
Q psy16847 79 PVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEAS 158 (208)
Q Consensus 79 ~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s 158 (208)
+++.+++.+++.+|.|++++++|||++++|||||| +||+||.+||+|++.++++.|+|+|++.++++||+.|+ ++|+
T Consensus 108 ~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~ms 184 (246)
T 1j2p_A 108 TVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN-EVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYR--DDLS 184 (246)
T ss_dssp CHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES-SSEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCC--TTCC
T ss_pred CHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC-CCCEEEEECCCceEEeeeEEEECCCcHHHHHHHHHHhc--cCCC
Confidence 99999999999999999999999999999999999 88999999999999999999999999999999999999 7999
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEe-ec
Q psy16847 159 LEEIVKHGLRALRDTLPNDSELTTKVRYSYVLT-VS 193 (208)
Q Consensus 159 ~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~-~~ 193 (208)
++||++++++||..+.+| ..++.+++|++|+ ++
T Consensus 185 ~eea~~la~~al~~~~~~--~~sg~~i~v~vi~~~~ 218 (246)
T 1j2p_A 185 FDDAMVLGLVAMGLSIES--ELVPENIEVGYVKVDD 218 (246)
T ss_dssp HHHHHHHHHHHHHHHHTS--CCCGGGEEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCcEEEEEEEcCC
Confidence 999999999999999987 3799999999999 54
No 17
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=2.5e-47 Score=313.25 Aligned_cols=190 Identities=31% Similarity=0.420 Sum_probs=181.9
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCccccc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTL 78 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 78 (208)
+||+++|+|+|||+++||||||+|+|.++++. ++.+||++|++|++|++||+.+|++.+.++++.+++.|++.+++++
T Consensus 20 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 99 (242)
T 1ryp_E 20 LEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDI 99 (242)
T ss_dssp HHHHTTSCCEEEEECSSCEEEEEECCCSSTTBCGGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHcCCCEEEEEECCEEEEEEeecCCCcCccCccCCceEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 47899999999999999999999999999974 5789999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccC------CCccceeeEEEEEe-CCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhh
Q psy16847 79 PVFRLISIVGNKMQVCTQRYD------KRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRL 151 (208)
Q Consensus 79 ~~~~la~~l~~~~~~~t~~~~------~rP~~v~~ll~G~d-~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~ 151 (208)
+++.+++.+++++|.|+++++ +|||++++|||||| ++||+||.+||+|++.++++.|+|+|++.++++||+.|
T Consensus 100 ~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~ 179 (242)
T 1ryp_E 100 NVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEW 179 (242)
T ss_dssp CHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEeccCEEEECCCCHHHHHHHHHhh
Confidence 999999999999999999888 89999999999999 67799999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeece
Q psy16847 152 ADFPEASLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVSI 194 (208)
Q Consensus 152 ~~~~~~s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~ 194 (208)
+ ++|+++||++++++||..+.+|+ .++.+++|++|+++.
T Consensus 180 ~--~~ms~eea~~la~~al~~~~~~~--~sg~~i~v~vi~~~~ 218 (242)
T 1ryp_E 180 H--SSLTLKEAELLVLKILKQVMEEK--LDENNAQLSCITKQD 218 (242)
T ss_dssp C--TTCCHHHHHHHHHHHHHHHCSSC--CCTTSEEEEEEETTT
T ss_pred c--cCCCHHHHHHHHHHHHHHHhhcc--CCCCcEEEEEEECCC
Confidence 9 89999999999999999999883 689999999999984
No 18
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=4.7e-47 Score=312.75 Aligned_cols=188 Identities=34% Similarity=0.503 Sum_probs=180.2
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCccccc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTL 78 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 78 (208)
+||+++|+|+|||+++||||||+|+|.++++. ++.+||++|++|++|+++|+.+|++.+.++++.+++.|++.+++++
T Consensus 23 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 102 (248)
T 1iru_D 23 QEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPV 102 (248)
T ss_dssp HHHHHTSCCEEEECCSSEEEEEECCCCCCSSSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHcCCCEEEEEeCCEEEEEEeecccccCccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 47899999999999999999999999999974 5789999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEe-CCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCC
Q psy16847 79 PVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA 157 (208)
Q Consensus 79 ~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d-~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~ 157 (208)
+++.+++++++.+|.|++++++|||++++|||||| +.||+||.+||+|++.+++++|+|++++.++++||+.|+ ++|
T Consensus 103 ~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~--~~m 180 (248)
T 1iru_D 103 TVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYT--DEA 180 (248)
T ss_dssp CHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEESTTHHHHHHHHTTTCC--SST
T ss_pred CHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEECCCcHHHHHHHHHhhc--ccc
Confidence 99999999999999999998999999999999999 678999999999999999999999999999999999999 799
Q ss_pred --CHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeece
Q psy16847 158 --SLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVSI 194 (208)
Q Consensus 158 --s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~ 194 (208)
+++||++++++||+.+.+ .++++++|++|+++.
T Consensus 181 ~~s~eea~~la~~al~~~~~----~sg~~i~v~vi~~~g 215 (248)
T 1iru_D 181 IETDDLTIKLVIKALLEVVQ----SGGKNIELAVMRRDQ 215 (248)
T ss_dssp TCSHHHHHHHHHHHHHTTSC----TTSTTCCEEEEESSS
T ss_pred cCCHHHHHHHHHHHHHHHHc----CCCCcEEEEEEECCC
Confidence 999999999999999984 479999999999985
No 19
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=3.8e-46 Score=307.62 Aligned_cols=189 Identities=33% Similarity=0.482 Sum_probs=180.2
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCccccc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHH-HHHHcCCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLN-YKYAHKDT 77 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~-~~~~~~~~ 77 (208)
+||+++|+|+|||+++||||||+|+|.+.++. ++.+||++|++|++|++||..+|++.+.++++.+++. |++.++.+
T Consensus 25 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 104 (250)
T 1ryp_B 25 LTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEY 104 (250)
T ss_dssp HHHHHTSCCEEEEEETTEEEEEEECCCSCSSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHHSSC
T ss_pred HHHHHcCCcEEEEEECCEEEEEEeccCCCccccCcccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 47899999999999999999999999987664 6789999999999999999999999999999999999 99999999
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeC-CCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCC
Q psy16847 78 LPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 156 (208)
Q Consensus 78 i~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~-~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~ 156 (208)
++++.+++.+++++|.++++.++|||++++||||||+ .||+||.+||+|++.+++++|+|++++.++++||+.|+ ++
T Consensus 105 ~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~ 182 (250)
T 1ryp_B 105 PPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWN--DE 182 (250)
T ss_dssp CCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCC--TT
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeeceeEecCccHHHHHHHHHHhc--cC
Confidence 9999999999999999999888899999999999997 57999999999999999999999999999999999999 89
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeec
Q psy16847 157 ASLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVS 193 (208)
Q Consensus 157 ~s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~ 193 (208)
|+++||++++++||+.++++| +++++++|++|+++
T Consensus 183 ms~eea~~la~~al~~~~~~~--~sg~~i~v~vi~~~ 217 (250)
T 1ryp_B 183 LELEDAIHIALLTLKESVEGE--FNGDTIELAIIGDE 217 (250)
T ss_dssp CCHHHHHHHHHHHHHHHCCSC--CSTTTEEEEEECSC
T ss_pred CCHHHHHHHHHHHHHHHhccc--cCCCCEEEEEEEcc
Confidence 999999999999999999875 58999999999987
No 20
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=3.3e-46 Score=307.28 Aligned_cols=183 Identities=20% Similarity=0.213 Sum_probs=169.3
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCcccccccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcC-CCCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHK-DTLP 79 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~i~ 79 (208)
+||+++|+|+|||+++||||||+|+| .++.+|||+|+||++|+++|+.+|++.|.+.++.+++.|++.++ .+++
T Consensus 21 ~~av~~GtT~vgi~~kdgVVlaadkr-----~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~~~~~~i~ 95 (248)
T 3mi0_A 21 RKGIARAKSVVALAYAGGVLFVAENP-----SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRRDVT 95 (248)
T ss_dssp HHHHHTSCCEEEEEETTEEEEEEECC-----CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCC
T ss_pred HHHHhCCCcEEEEEeCCEEEEEEeCC-----CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 47899999999999999999999999 35789999999999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHH-HHHHHHhhccCCCccceeeEEEEEeC----CCcEEEEECCCCceee-ceEEeeCCCcHHHHHHHHHhhCC
Q psy16847 80 VFRLISIVG-NKMQVCTQRYDKRPYGVGLLVAGYDD----AGPHIYQTCPSSNYYD-VKAMAIGSRSQSARTYLEKRLAD 153 (208)
Q Consensus 80 ~~~la~~l~-~~~~~~t~~~~~rP~~v~~ll~G~d~----~g~~ly~vd~~G~~~~-~~~~a~G~~~~~~~~~Le~~~~~ 153 (208)
++.++++++ .+.|.||+ ++|||+|++||+|||+ .||+||++||+|++.+ ++++|+|++++.++++||++|+
T Consensus 96 v~~la~~l~~~l~q~yt~--~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~Le~~y~- 172 (248)
T 3mi0_A 96 GRQLANVYAQTLGTIFTE--QAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYA- 172 (248)
T ss_dssp HHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHHHHHhhcC-
Confidence 999999999 67888997 5799999999999998 7899999999999995 9999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhC-------CCCcCCCCCcEEEEEEeece
Q psy16847 154 FPEASLEEIVKHGLRALRDTL-------PNDSELTTKVRYSYVLTVSI 194 (208)
Q Consensus 154 ~~~~s~~eai~l~~~al~~~~-------~~d~~~~~~~i~v~vi~~~~ 194 (208)
++|+++||++++++||+.++ +++ +++++++|+||+++.
T Consensus 173 -~~mt~eeai~la~~aL~~~~~~~~~~~~~~--~~~~~iev~vv~~~g 217 (248)
T 3mi0_A 173 -ENASLTDALRIAVAALRAGSADTSGGDQPT--LGVASLEVAVLDANR 217 (248)
T ss_dssp -TTCCHHHHHHHHHHHHHHC--------------CCTTEEEEEEETTS
T ss_pred -CCCCHHHHHHHHHHHHHHHHhhcccCcccc--cCCCcEEEEEEECCC
Confidence 79999999999999999999 554 789999999999984
No 21
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=4.7e-46 Score=300.12 Aligned_cols=189 Identities=16% Similarity=0.219 Sum_probs=177.0
Q ss_pred ccccCCcEEEEEeCCEEEEEEEecCccccc---ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q psy16847 3 AVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLP 79 (208)
Q Consensus 3 av~~G~tvigi~~~dgVVla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 79 (208)
.+++|+|+|||+++||||||+|+|.++++. ++.+||++|++|++|++||+.+|++.+.++++.+++.|++.++++++
T Consensus 5 ~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 84 (213)
T 1iru_M 5 YVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMT 84 (213)
T ss_dssp CCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred ccCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 468999999999999999999999999863 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCCC-cEEEEECCCCceeeceEEeeCCCcHHHHHHHHHh--------
Q psy16847 80 VFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAG-PHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKR-------- 150 (208)
Q Consensus 80 ~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g-~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~-------- 150 (208)
++.+++++++.+ |+++ .|||++++||||||++| |+||.+||+|++.+++++|+|+|++.++++||+.
T Consensus 85 v~~la~~l~~~~--y~~r--~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~ 160 (213)
T 1iru_M 85 TGAIAAMLSTIL--YSRR--FFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQN 160 (213)
T ss_dssp HHHHHHHHHHHH--HHTT--TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSS
T ss_pred HHHHHHHHHHHH--HhhC--CCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhccccccccc
Confidence 999999999998 7776 58999999999999765 9999999999999999999999999999999999
Q ss_pred -hCCCCCCCHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeeceeecC
Q psy16847 151 -LADFPEASLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVSIHSTS 198 (208)
Q Consensus 151 -~~~~~~~s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~~~~~ 198 (208)
|+ ++|+++||++++++||..+.+|| ..++.+++|++|+++.....
T Consensus 161 ~~~--~~~s~eea~~l~~~al~~~~~~d-~~s~~~i~v~vi~~~g~~~~ 206 (213)
T 1iru_M 161 VEH--VPLSLDRAMRLVKDVFISAAERD-VYTGDALRICIVTKEGIREE 206 (213)
T ss_dssp CCC--CCCCHHHHHHHHHHHHHHHHHHB-TTSCSEEEEEEEETTEEEEE
T ss_pred cCC--CCCCHHHHHHHHHHHHHHHHHhC-CccCCcEEEEEEcCCCeEEE
Confidence 65 79999999999999999999999 47999999999999965443
No 22
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=1.4e-46 Score=307.15 Aligned_cols=188 Identities=14% Similarity=0.200 Sum_probs=178.9
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCccc-cc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHH-----
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKY----- 72 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~----- 72 (208)
+||+++|+|+|||+++||||||+|+|.+.+ +. ++.+||++|++|++|+++|..+|++.+.++++.+++.|++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (233)
T 1ryp_N 2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 81 (233)
T ss_dssp CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred cccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchh
Confidence 589999999999999999999999999986 32 5889999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCC-CcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhh
Q psy16847 73 AHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-GPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRL 151 (208)
Q Consensus 73 ~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~-g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~ 151 (208)
.++++++++.+++++++.+ |++++++|||++++||||||++ ||+||.+||+|++.++++.|+|++++.++++||+.|
T Consensus 82 ~~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~ 159 (233)
T 1ryp_N 82 DAEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVV 159 (233)
T ss_dssp TTTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTC
T ss_pred hcCCCCCHHHHHHHHHHHH--HHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhh
Confidence 8999999999999999998 7778788999999999999975 899999999999999999999999999999999999
Q ss_pred CCCC-----CCCHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeec
Q psy16847 152 ADFP-----EASLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVS 193 (208)
Q Consensus 152 ~~~~-----~~s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~ 193 (208)
+ + +|+++||++++++||+.+.+|| ..++.+++|++|+++
T Consensus 160 ~--~~~~~~~ms~eea~~la~~al~~~~~rd-~~sg~~i~v~vi~~~ 203 (233)
T 1ryp_N 160 D--RESDIPKTTVQVAEEAIVNAMRVLYYRD-ARSSRNFSLAIIDKN 203 (233)
T ss_dssp S--SGGGGGGCCHHHHHHHHHHHHHHHHHHB-TTCCSEEEEEEEETT
T ss_pred c--cccccCCCCHHHHHHHHHHHHHHHHHhc-ccCCCcEEEEEEECC
Confidence 9 6 8999999999999999999999 479999999999998
No 23
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=6.2e-46 Score=300.43 Aligned_cols=184 Identities=25% Similarity=0.407 Sum_probs=169.7
Q ss_pred cccccCCcEEEEEeCCEEEEEEEecCccc-cc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy16847 2 EAVKQGSATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTL 78 (208)
Q Consensus 2 ~av~~G~tvigi~~~dgVVla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 78 (208)
.++++|+|+|||+++||||||+|+|.+++ +. ++.+||++|+++++|++||+.+|++.+.++++.+++.|++.+++++
T Consensus 3 ~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (217)
T 1yar_H 3 QTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNM 82 (217)
T ss_dssp ------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 57899999999999999999999999986 43 6889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCC
Q psy16847 79 PVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEAS 158 (208)
Q Consensus 79 ~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s 158 (208)
+++.+++++++.++.+ + .|||++++|||||| +||+||.+||+|++.+++++|+|+|++.++++||+.|+ ++|+
T Consensus 83 ~v~~la~~l~~~~~~~--r--~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~~s 155 (217)
T 1yar_H 83 PIEAVATLLSNMLNQV--K--YMPYMVQLLVGGID-TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYS--EKMT 155 (217)
T ss_dssp CHHHHHHHHHHHHHHT--T--TSCCCEEEEEEEES-SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCC--TTCC
T ss_pred CHHHHHHHHHHHHHhc--C--CCCceEEEEEEEEC-CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcc--cCCC
Confidence 9999999999999653 3 58999999999999 89999999999999999999999999999999999999 7999
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEee-c
Q psy16847 159 LEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTV-S 193 (208)
Q Consensus 159 ~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~-~ 193 (208)
++||++++++||+.+.+|| ..++++++|++|++ +
T Consensus 156 ~eea~~la~~al~~~~~rd-~~s~~~i~v~vi~~~~ 190 (217)
T 1yar_H 156 VDEGVDLVIRAISAAKQRD-SASGGMIDVAVITRKD 190 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCCSCCEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEECCC
Confidence 9999999999999999999 47999999999999 5
No 24
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=8.4e-46 Score=297.11 Aligned_cols=186 Identities=19% Similarity=0.176 Sum_probs=176.1
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCccc-cc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDT 77 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 77 (208)
+||+++|+|+|||+++||||||+|+|.+++ +. ++.+||++|++|++|+++|..+|++.+.++++.+++.|++.+++
T Consensus 3 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~- 81 (205)
T 1ryp_H 3 KGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT- 81 (205)
T ss_dssp TTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred CCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 589999999999999999999999999998 43 57899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeC-CCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCC
Q psy16847 78 LPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPE 156 (208)
Q Consensus 78 i~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~-~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~ 156 (208)
++++.+++++++.+|.|+++ |++++||||||+ .||+||.+||+|++.++++.|+|+|++.++++||+.|+ ++
T Consensus 82 ~~v~~la~~l~~~~~~~~~~-----~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~ 154 (205)
T 1ryp_H 82 PSTETAASVFKELCYENKDN-----LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFR--EN 154 (205)
T ss_dssp CCHHHHHHHHHHHHHHTTTT-----CCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCC--TT
T ss_pred CCHHHHHHHHHHHHHhhhcC-----ceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccC--CC
Confidence 99999999999999888642 899999999996 67999999999999999999999999999999999999 89
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeecee
Q psy16847 157 ASLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVSIH 195 (208)
Q Consensus 157 ~s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~~ 195 (208)
|+++||++++++||+.+.+|| ..++++++|++|+++..
T Consensus 155 ~s~eea~~l~~~al~~a~~~d-~~sg~~i~v~vi~~~g~ 192 (205)
T 1ryp_H 155 MSKEETVDFIKHSLSQAIKWD-GSSGGVIRMVVLTAAGV 192 (205)
T ss_dssp CCHHHHHHHHHHHHHHHHHHB-TTCCSCEEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CccCCeEEEEEEcCCCE
Confidence 999999999999999999999 47999999999999843
No 25
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=9.2e-46 Score=306.73 Aligned_cols=186 Identities=20% Similarity=0.196 Sum_probs=170.1
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCcccc---cccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASEL---AAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDT 77 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l---~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 77 (208)
+||+++|+|+|||+++||||||+|+|.+++. .++.+||++|++|++|+++|+.+|++.+.++++.+++.|++.++++
T Consensus 23 ~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~ 102 (261)
T 3nzj_H 23 PKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSRE 102 (261)
T ss_dssp -------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCCC
Confidence 4899999999999999999999999999874 2588999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCC
Q psy16847 78 LPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA 157 (208)
Q Consensus 78 i~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~ 157 (208)
++++.+++++++.++.| .|||++++||||||++||+||++||+|++.++++.|+|+|++.++++||+.|+ ++|
T Consensus 103 ~~v~~~a~~l~~~l~~~-----~~~~gv~llvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~m 175 (261)
T 3nzj_H 103 PRVVSALQMLKQHLFKY-----QGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWK--QDL 175 (261)
T ss_dssp CCHHHHHHHHHHHHHHT-----TTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCC--SSC
T ss_pred CCHHHHHHHHHHHHHHh-----cCcccEEEEEEEEeCCCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhc--cCC
Confidence 99999999999987543 36999999999999989999999999999999999999999999999999999 899
Q ss_pred CHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeece
Q psy16847 158 SLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVSI 194 (208)
Q Consensus 158 s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~ 194 (208)
++|||++++++||+.+++|| ..++++++|++|+++.
T Consensus 176 s~eEA~~la~~al~~a~~rD-~~sg~~iev~vI~kdg 211 (261)
T 3nzj_H 176 TKEEAIKLASDAIQAGIWND-LGSGSNVDVCVMEIGK 211 (261)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-TTCCSCEEEEEEETTS
T ss_pred CHHHHHHHHHHHHHHHHhhC-CCCCCcEEEEEEECCC
Confidence 99999999999999999999 4799999999999985
No 26
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=1.5e-45 Score=299.14 Aligned_cols=191 Identities=18% Similarity=0.254 Sum_probs=177.7
Q ss_pred ccccCCcEEEEEeCCEEEEEEEecCccccc---ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcC-CCC
Q psy16847 3 AVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHK-DTL 78 (208)
Q Consensus 3 av~~G~tvigi~~~dgVVla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~i 78 (208)
++++|+|+|||+++||||||+|+|.++++. ++.+||++|++|++|+++|+.+|++.+.++++.+++.|++.++ +++
T Consensus 5 ~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 84 (222)
T 1ryp_M 5 YGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKL 84 (222)
T ss_dssp CCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred cccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 578999999999999999999999999863 5789999999999999999999999999999999999999999 999
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCCC-cEEEEECCCCceeeceEEeeCCCcHHHHHHHHHh-------
Q psy16847 79 PVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAG-PHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKR------- 150 (208)
Q Consensus 79 ~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g-~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~------- 150 (208)
+++.+|+++++.+ |+++ .|||++++||||||++| |+||.+||.|++.++++.|+|++++.++++||+.
T Consensus 85 ~v~~la~~l~~~l--y~~r--~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~ 160 (222)
T 1ryp_M 85 SINSAARNIQHLL--YGKR--FFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQY 160 (222)
T ss_dssp CHHHHHHHHHHHH--HTTT--TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCB
T ss_pred CHHHHHHHHHHHH--HhcC--CCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhccccccccc
Confidence 9999999999998 6665 47999999999999765 9999999999999999999999999999999998
Q ss_pred ----------hCCCCCCCHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeeceeecCCC
Q psy16847 151 ----------LADFPEASLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVSIHSTSTY 200 (208)
Q Consensus 151 ----------~~~~~~~s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~~~~~~~ 200 (208)
|+ ++|++|||++++++||..+.+|| ..++++++|++|+++......+
T Consensus 161 ~~~~~~~~~~~~--~~~s~eeA~~la~~al~~a~~rd-~~sg~~i~v~vi~~~g~~~~~~ 217 (222)
T 1ryp_M 161 EPGTNGKVKKPL--KYLSVEEVIKLVRDSFTSATERH-IQVGDGLEILIVTKDGVRKEFY 217 (222)
T ss_dssp CTTSTTCSBCCC--CCCCHHHHHHHHHHHHHHHHHHB-TTCCSEEEEEEEETTEEEEEEE
T ss_pred ccccccccccCC--CCCCHHHHHHHHHHHHHHHHHhc-ccCCCcEEEEEEcCCCeEEEEe
Confidence 66 79999999999999999999999 4799999999999996554433
No 27
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.7e-45 Score=298.24 Aligned_cols=181 Identities=25% Similarity=0.337 Sum_probs=171.3
Q ss_pred CCcEEEEEeCCEEEEEEEecCcccc---cccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q psy16847 7 GSATVGLKNKTHAVIIALKRAASEL---AAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRL 83 (208)
Q Consensus 7 G~tvigi~~~dgVVla~d~~~~~~l---~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 83 (208)
|+|+|||+++||||||+|+|.+++. .++.+||++|++|++|+++|+.+|++.+.++++.+++.|++.++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 7999999999999999999999874 2688999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCccceeeEEEEEeC-CCcEEEEECCCCceeece-EEeeCCCcHHHHHHHHHhhCCCCCCCHHH
Q psy16847 84 ISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVK-AMAIGSRSQSARTYLEKRLADFPEASLEE 161 (208)
Q Consensus 84 a~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~-~g~~ly~vd~~G~~~~~~-~~a~G~~~~~~~~~Le~~~~~~~~~s~~e 161 (208)
++++++.++.++ .|||++++||||||+ +||+||.+||+|++.+++ +.|+|++++.++++||+.|+ ++|+++|
T Consensus 81 a~~l~~~~~~~~----~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~--~~ms~ee 154 (219)
T 3h4p_a 81 ATLLSNILHSSR----MFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYD--RDMSVEE 154 (219)
T ss_dssp HHHHHHHHHHTT----TTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCC--TTCCHHH
T ss_pred HHHHHHHHHHhc----CCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcC--CCCCHHH
Confidence 999999997662 489999999999997 779999999999999999 99999999999999999999 8999999
Q ss_pred HHHHHHHHHHhhCCCCcCCCCCcEEEEEEeece
Q psy16847 162 IVKHGLRALRDTLPNDSELTTKVRYSYVLTVSI 194 (208)
Q Consensus 162 ai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~ 194 (208)
|++++++||..+++|| ..++++++|++|+++.
T Consensus 155 a~~la~~al~~~~~rd-~~sg~~i~v~vi~~~g 186 (219)
T 3h4p_a 155 GIKLALNALKSAMERD-TFSGNGISLAVITKDG 186 (219)
T ss_dssp HHHHHHHHHHHHHTSC-SSCCSCCCEEEEETTE
T ss_pred HHHHHHHHHHHHHhhc-CCCCCcEEEEEEeCCC
Confidence 9999999999999999 5899999999999983
No 28
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=3.2e-45 Score=292.07 Aligned_cols=188 Identities=18% Similarity=0.264 Sum_probs=174.8
Q ss_pred CcEEEEEeCCEEEEEEEecCccccc---ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q psy16847 8 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 84 (208)
Q Consensus 8 ~tvigi~~~dgVVla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 84 (208)
+|+|||+++||||||+|+|.++++. ++.+||++|++|++++++|+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 81 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 6899999999999999999998863 4789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCccceeeEEEEEeC--CCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCCHHHH
Q psy16847 85 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDD--AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEI 162 (208)
Q Consensus 85 ~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~--~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s~~ea 162 (208)
+.+++.++.|++. ++||++++||||||+ +||+||.+||+|++.+++++|+|++++.++++||+.|+ ++|+++||
T Consensus 82 ~~l~~~l~~~~~~--r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~--~~~s~eea 157 (198)
T 1ryp_K 82 SFVRQELAKSIRS--RRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYR--PDMTTEEG 157 (198)
T ss_dssp HHHHHHHHHHTTS--SSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCC--TTCCHHHH
T ss_pred HHHHHHHHHhccc--CCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcC--CCCCHHHH
Confidence 9999999887742 359999999999995 67999999999999999999999999999999999999 79999999
Q ss_pred HHHHHHHHHhhCCCCcCCCCCcEEEEEEeec-eeecCCC
Q psy16847 163 VKHGLRALRDTLPNDSELTTKVRYSYVLTVS-IHSTSTY 200 (208)
Q Consensus 163 i~l~~~al~~~~~~d~~~~~~~i~v~vi~~~-~~~~~~~ 200 (208)
++++++||..+.+|| ..++.+++|++|+++ ++...++
T Consensus 158 ~~l~~~al~~~~~~d-~~s~~~i~v~vi~~~g~~~~~~~ 195 (198)
T 1ryp_K 158 LDLLKLCVQELEKRM-PMDFKGVIVKIVDKDGIRQVDDF 195 (198)
T ss_dssp HHHHHHHHHHHHHHC-SBCCCCEEEEEEETTEEEEECCC
T ss_pred HHHHHHHHHHHHHhC-ccCCCceEEEEEcCCCEEEeccc
Confidence 999999999999999 589999999999998 5554443
No 29
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=8.2e-45 Score=290.65 Aligned_cols=180 Identities=31% Similarity=0.402 Sum_probs=170.5
Q ss_pred CcEEEEEeCCEEEEEEEecCccc-cc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q psy16847 8 SATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 84 (208)
Q Consensus 8 ~tvigi~~~dgVVla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 84 (208)
+|+|||+++||||||+|+|.+++ +. ++.+||++|++|++|+++|+.+|++.+.++++.+++.|++.+++++|++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999986 43 6889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeece-EEeeCCCcHHHHHHHHHhhCCCCCCCHHHHH
Q psy16847 85 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVK-AMAIGSRSQSARTYLEKRLADFPEASLEEIV 163 (208)
Q Consensus 85 ~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~-~~a~G~~~~~~~~~Le~~~~~~~~~s~~eai 163 (208)
+++++.++.+ + .|||++++||||||++||+||.+||+|++.+++ ++|+|+|++.++++||+.|+ ++|+++||+
T Consensus 81 ~~l~~~~~~~--r--~rp~~~~~lvaG~D~~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~--~~~s~eea~ 154 (202)
T 1j2q_H 81 TLTSNLLNSY--R--YFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFT--PEIGVDEAV 154 (202)
T ss_dssp HHHHHHHHHT--T--TSCCCEEEEEEEEETTEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCC--TTCCHHHHH
T ss_pred HHHHHHHHhh--C--CCCceEEEEEEEEeCCCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcC--CCcCHHHHH
Confidence 9999999653 3 589999999999998889999999999999999 99999999999999999999 899999999
Q ss_pred HHHHHHHHhhCCCCcCCCCCcEEEEEEeece
Q psy16847 164 KHGLRALRDTLPNDSELTTKVRYSYVLTVSI 194 (208)
Q Consensus 164 ~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~ 194 (208)
+++++||+.+.+|| ..++++++|++|+++.
T Consensus 155 ~la~~al~~~~~~d-~~s~~~i~v~vi~~~g 184 (202)
T 1j2q_H 155 ELAVRAIYSAMKRD-SASGDGIDVVKITEDE 184 (202)
T ss_dssp HHHHHHHHHHHTTC-TTSCSCEEEEEECSSC
T ss_pred HHHHHHHHHHHhcC-CCCCCcEEEEEEeCCC
Confidence 99999999999999 4789999999999983
No 30
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=6.2e-45 Score=291.97 Aligned_cols=188 Identities=18% Similarity=0.254 Sum_probs=175.1
Q ss_pred cccCCcEEEEEeCCEEEEEEEecCccccc---ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Q psy16847 4 VKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPV 80 (208)
Q Consensus 4 v~~G~tvigi~~~dgVVla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 80 (208)
+.+|+|+|||+++||||||+|+|.++++. ++.+||++|++|++|+++|+.+|++.+.++++.+++.|++.+++++++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 84 (205)
T 1iru_J 5 SYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKP 84 (205)
T ss_dssp TSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred cCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCH
Confidence 57899999999999999999999999974 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCccceeeEEEEEeC--CCcEEEEECCCCceeec-eEEeeCCCcHHHHHHHHHhhCCCCCC
Q psy16847 81 FRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD--AGPHIYQTCPSSNYYDV-KAMAIGSRSQSARTYLEKRLADFPEA 157 (208)
Q Consensus 81 ~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~--~g~~ly~vd~~G~~~~~-~~~a~G~~~~~~~~~Le~~~~~~~~~ 157 (208)
+.+++.+++.+ |++++ .||++++||||||+ +||+||.+||+|++.++ .++|+|+|++.++++||+.|+ ++|
T Consensus 85 ~~la~~l~~~~--y~~r~--~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~--~~~ 158 (205)
T 1iru_J 85 YTLMSMVANLL--YEKRF--GPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWE--PNM 158 (205)
T ss_dssp HHHHHHHHHHH--HTTTT--SCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCC--SSC
T ss_pred HHHHHHHHHHH--HHhcC--CCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccC--CCC
Confidence 99999999998 88774 49999999999995 67999999999999776 569999999999999999999 799
Q ss_pred CHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeeceeecC
Q psy16847 158 SLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVSIHSTS 198 (208)
Q Consensus 158 s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~~~~~ 198 (208)
+++||++++++||+.+.+|| ..++.+++|++|+++.....
T Consensus 159 s~eea~~l~~~al~~~~~~d-~~s~~~i~v~vi~~~g~~~~ 198 (205)
T 1iru_J 159 DPDHLFETISQAMLNAVDRD-AVSGMGVIVHIIEKDKITTR 198 (205)
T ss_dssp CHHHHHHHHHHHHHHHGGGB-TTSCSCEEEEEEESSBEEEE
T ss_pred CHHHHHHHHHHHHHHHHHhC-cccCCceEEEEEcCCCEEEE
Confidence 99999999999999999999 47899999999999955443
No 31
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=1.4e-44 Score=289.71 Aligned_cols=187 Identities=20% Similarity=0.251 Sum_probs=174.6
Q ss_pred ccccCCcEEEEEeCCEEEEEEEecCccccc---ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q psy16847 3 AVKQGSATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLP 79 (208)
Q Consensus 3 av~~G~tvigi~~~dgVVla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 79 (208)
.+++|+|+|||+++||||||+|+|.++++. ++.+||++|+ |++|+++|+.+|++.+.++++.+++.|++.++++++
T Consensus 4 ~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 82 (204)
T 1ryp_J 4 SSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIE 82 (204)
T ss_dssp GGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cCCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 467999999999999999999999999974 4789999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeC--CCcEEEEECCCCceeec-eEEeeCCCcHHHHHHHHHhhCCCCC
Q psy16847 80 VFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD--AGPHIYQTCPSSNYYDV-KAMAIGSRSQSARTYLEKRLADFPE 156 (208)
Q Consensus 80 ~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~--~g~~ly~vd~~G~~~~~-~~~a~G~~~~~~~~~Le~~~~~~~~ 156 (208)
++.+++.+++.+ |+++++ ||++++||||||+ +||+||.+||+|++.++ .++|+|+|++.++++||+.|+ ++
T Consensus 83 v~~la~~l~~~~--y~~~~~--P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~--~~ 156 (204)
T 1ryp_J 83 PETFTQLVSSSL--YERRFG--PYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYE--PN 156 (204)
T ss_dssp HHHHHHHHHHHH--HTTTTS--CCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCC--SS
T ss_pred HHHHHHHHHHHH--HHhcCC--CceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcC--CC
Confidence 999999999998 888754 9999999999995 67999999999999776 669999999999999999999 79
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeeceeec
Q psy16847 157 ASLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVSIHST 197 (208)
Q Consensus 157 ~s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~~~~ 197 (208)
|+++||++++++||..+.+|| ..++.+++|++|+++....
T Consensus 157 ~s~eea~~l~~~al~~~~~~d-~~s~~~i~v~vi~~~g~~~ 196 (204)
T 1ryp_J 157 LEPEDLFETISQALLNAADRD-ALSGWGAVVYIIKKDEVVK 196 (204)
T ss_dssp CCHHHHHHHHHHHHHHHHTTB-TTSCSCEEEEEEESSCEEE
T ss_pred cCHHHHHHHHHHHHHHHHHhC-cccCCcEEEEEEcCCCEEE
Confidence 999999999999999999999 4789999999999985543
No 32
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=2.1e-45 Score=305.76 Aligned_cols=188 Identities=14% Similarity=0.200 Sum_probs=178.5
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCccc-cc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHH-----
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKY----- 72 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~----- 72 (208)
++|+++|+|+|||+++||||||+|+|.+.+ +. ++.+||++|++|++|+++|+.+|++.|.++++.+++.|++
T Consensus 35 ~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~ 114 (266)
T 1g0u_M 35 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 114 (266)
T ss_dssp CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred ccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhccchh
Confidence 478999999999999999999999999986 32 5889999999999999999999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCC-CcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhh
Q psy16847 73 AHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-GPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRL 151 (208)
Q Consensus 73 ~~~~~i~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~-g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~ 151 (208)
.++++++++.+++++++.+ |++++++|||++++||||||++ ||+||.+||+|++.++++.|+|++++.++++||+.|
T Consensus 115 ~~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~ 192 (266)
T 1g0u_M 115 DAEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVV 192 (266)
T ss_dssp TTTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHHHTTTC
T ss_pred hcCCCCCHHHHHHHHHHHH--HHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHHHHHhh
Confidence 8999999999999999998 7778788999999999999975 899999999999999999999999999999999999
Q ss_pred CCCC-----CCCHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeec
Q psy16847 152 ADFP-----EASLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVS 193 (208)
Q Consensus 152 ~~~~-----~~s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~ 193 (208)
+ + +|+++||++++++||+.+.+|| ..++.+++|++|+++
T Consensus 193 ~--~~~~~~~ms~eeA~~la~~al~~a~~rd-~~sg~~i~v~vI~k~ 236 (266)
T 1g0u_M 193 D--RESDIPKTTVQVAEEAIVNAMRVLYYRD-ARSSRNFSLAIIDKN 236 (266)
T ss_dssp S--SGGGGGGCCHHHHHHHHHHHHHHHHHHB-TTCCSEEEEEEEETT
T ss_pred c--ccccCCCCCHHHHHHHHHHHHHHHHHhc-CCCCCcEEEEEEECC
Confidence 9 6 8999999999999999999999 479999999999998
No 33
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=9.8e-45 Score=296.38 Aligned_cols=178 Identities=22% Similarity=0.264 Sum_probs=169.9
Q ss_pred CcEEEEEeCCEEEEEEEecCccccc---ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q psy16847 8 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 84 (208)
Q Consensus 8 ~tvigi~~~dgVVla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 84 (208)
+|+|||+++||||||+|+|.++++. ++.+||++|++|++|+++|+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 6899999999999999999999963 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCCHHHHHH
Q psy16847 85 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVK 164 (208)
Q Consensus 85 ~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s~~eai~ 164 (208)
+++++.++.| .+||++++||||||++||+||.+||+|++.++++.|+|+|++.++++||+.|+ ++|+++||++
T Consensus 81 ~~l~~~l~~~-----~~p~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~ms~eeA~~ 153 (234)
T 3unf_H 81 RILRQTLFRY-----QGHVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQ--PNMTLEAAQE 153 (234)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCC--SSCCHHHHHH
T ss_pred HHHHHHHHhc-----CCCccEEEEEEEEeCCCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccC--CCCCHHHHHH
Confidence 9999998654 36999999999999989999999999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHhhCCCCcCCCCCcEEEEEEeec
Q psy16847 165 HGLRALRDTLPNDSELTTKVRYSYVLTVS 193 (208)
Q Consensus 165 l~~~al~~~~~~d~~~~~~~i~v~vi~~~ 193 (208)
++++||+.+++|| ..++++++|++|+++
T Consensus 154 la~~al~~~~~~D-~~sg~~iev~vi~~d 181 (234)
T 3unf_H 154 LLVEAITAGILSD-LGSGGNVDACVITAG 181 (234)
T ss_dssp HHHHHHHHHHHHB-TTCCSCEEEEEEESS
T ss_pred HHHHHHHHHHhhc-CCCCCcEEEEEEECC
Confidence 9999999999999 479999999999998
No 34
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=1.4e-44 Score=289.98 Aligned_cols=180 Identities=16% Similarity=0.119 Sum_probs=171.1
Q ss_pred CcEEEEEeCCEEEEEEEecCccc-cc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q psy16847 8 SATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 84 (208)
Q Consensus 8 ~tvigi~~~dgVVla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 84 (208)
+|+|||+++||||||+|+|.+++ +. ++.+||++|++|++|+++|+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999998 53 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCccceeeEEEEEeC-CCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCCHHHHH
Q psy16847 85 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIV 163 (208)
Q Consensus 85 ~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~-~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s~~eai 163 (208)
+++++.+|.|++ ||++++|+||||+ +||+||.+||+|++.+++++|+|+|++.++++||+.|+ ++|+++||+
T Consensus 81 ~~l~~~~~~~~~-----p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~--~~~s~eea~ 153 (205)
T 1iru_H 81 SLFKEMCYRYRE-----DLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYR--EGMTKEECL 153 (205)
T ss_dssp HHHHHHHHHTTT-----TCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCC--TTCCHHHHH
T ss_pred HHHHHHHHhcCc-----CccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcC--CCCCHHHHH
Confidence 999999987763 9999999999997 67999999999999999999999999999999999999 799999999
Q ss_pred HHHHHHHHhhCCCCcCCCCCcEEEEEEeecee
Q psy16847 164 KHGLRALRDTLPNDSELTTKVRYSYVLTVSIH 195 (208)
Q Consensus 164 ~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~~ 195 (208)
+++++||+.+.+|| ..++.+++|++|+++..
T Consensus 154 ~l~~~al~~~~~~d-~~s~~~i~v~vi~~~g~ 184 (205)
T 1iru_H 154 QFTANALALAMERD-GSSGGVIRLAAIAESGV 184 (205)
T ss_dssp HHHHHHHHHHHHHB-TTCCSCEEEEEEETTEE
T ss_pred HHHHHHHHHHHHhc-cccCCcEEEEEEeCCCe
Confidence 99999999999999 58999999999999854
No 35
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=1.8e-44 Score=302.44 Aligned_cols=190 Identities=18% Similarity=0.253 Sum_probs=173.0
Q ss_pred cccccCCcEEEEEeCCEEEEEEEecCcccc---cccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCC
Q psy16847 2 EAVKQGSATVGLKNKTHAVIIALKRAASEL---AAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTL 78 (208)
Q Consensus 2 ~av~~G~tvigi~~~dgVVla~d~~~~~~l---~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 78 (208)
.|+++|+|+|||+++||||||+|+|.+.+. .++.+||++|++|++|+++|..+|++.+.++++.+++.|++.+++++
T Consensus 70 ~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~i 149 (287)
T 3nzj_K 70 IKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERI 149 (287)
T ss_dssp ------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred hheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 478999999999999999999999999863 26889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEe-CCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCC
Q psy16847 79 PVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA 157 (208)
Q Consensus 79 ~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d-~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~ 157 (208)
+++.+++.++++++.|++ +||++++|||||| +.||+||.+||+|++.++++.|+|+|++.++++||+.|+ ++|
T Consensus 150 sv~~la~~ls~~l~~~r~----~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~--~dm 223 (287)
T 3nzj_K 150 SVAAASKILSNLVYQYKG----AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYK--WDL 223 (287)
T ss_dssp CHHHHHHHHHHHHHHTTT----SCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSCC--TTC
T ss_pred CHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhhc--CCC
Confidence 999999999999987764 3999999999999 567999999999999999999999999999999999999 899
Q ss_pred CHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEeec-eeecC
Q psy16847 158 SLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLTVS-IHSTS 198 (208)
Q Consensus 158 s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~~~-~~~~~ 198 (208)
+++||++++++||..+.+|| ..++.+++|++|+++ ++...
T Consensus 224 s~eEAi~la~~aL~~a~~rD-~~sg~~i~V~vItkdg~~~l~ 264 (287)
T 3nzj_K 224 SVEDALYLGKRSILAAAHRD-AYSGGSVNLYHVTEDGWIYHG 264 (287)
T ss_dssp CHHHHHHHHHHHHHHHHHHB-TTCCSEEEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhhC-cCCCCceEEEEEeCCCEEEeC
Confidence 99999999999999999999 489999999999999 44433
No 36
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=2.9e-44 Score=297.80 Aligned_cols=182 Identities=17% Similarity=0.208 Sum_probs=168.8
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCcccccccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCC-CCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKD-TLP 79 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~l~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-~i~ 79 (208)
+||+++|+|+|||+++||||||+|+| .++.+|||+|++|++|+++|+.+|++.+.++++.+++.|++.++. +++
T Consensus 21 ~~av~~Gtt~vgi~~~dgVVlaaD~r-----s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~i~ 95 (259)
T 1q5q_A 21 RKGIARGRSVVVLTFRDGVLFVAENP-----STALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVT 95 (259)
T ss_dssp HHHHHTSCCEEEEECSSEEEEEECCS-----CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCC
T ss_pred HHHHhcCCcEEEEEeCCEEEEEEecC-----CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHHHHHHHHHHHHcCCcCCC
Confidence 37899999999999999999999999 367899999999999999999999999999999999999999884 999
Q ss_pred HHHHHHHHHH-HHHHHhhccCCCccceeeEEEEEe----CCCcEEEEECCCCcee-eceEEeeCCCcHHHHHHHHHhhCC
Q psy16847 80 VFRLISIVGN-KMQVCTQRYDKRPYGVGLLVAGYD----DAGPHIYQTCPSSNYY-DVKAMAIGSRSQSARTYLEKRLAD 153 (208)
Q Consensus 80 ~~~la~~l~~-~~~~~t~~~~~rP~~v~~ll~G~d----~~g~~ly~vd~~G~~~-~~~~~a~G~~~~~~~~~Le~~~~~ 153 (208)
++.+++++++ +.|.|+. ++|||++++|||||| +.||+||++||+|++. +++++|+|++++.++++||++|+
T Consensus 96 v~~la~~l~~~l~q~yt~--~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~- 172 (259)
T 1q5q_A 96 GRSLANAYAQTLGTIFTE--QPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYR- 172 (259)
T ss_dssp HHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEEECCChHHHHHHHHhhcc-
Confidence 9999999999 6777883 569999999999999 6789999999999999 88999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhC-----CCCcCCCCCcEEEEEEeec
Q psy16847 154 FPEASLEEIVKHGLRALRDTL-----PNDSELTTKVRYSYVLTVS 193 (208)
Q Consensus 154 ~~~~s~~eai~l~~~al~~~~-----~~d~~~~~~~i~v~vi~~~ 193 (208)
++|+++||++++++||..++ +|| . ++.+++|++|+++
T Consensus 173 -~~ms~eea~~la~~al~~~~~~~~~~rd-~-sg~~iev~vi~~~ 214 (259)
T 1q5q_A 173 -ADLDLEAAVGIAVNALRQGGAGEGEKRN-V-DVASLEVAVLDQS 214 (259)
T ss_dssp -TTCCHHHHHHHHHHHHTTCC---------C-CSSCSEEEEEETT
T ss_pred -CCCCHHHHHHHHHHHHHHHhhccccccc-C-CCCcEEEEEEECC
Confidence 79999999999999999999 888 3 9999999999998
No 37
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=4.8e-44 Score=300.79 Aligned_cols=190 Identities=21% Similarity=0.205 Sum_probs=176.6
Q ss_pred CcccccCCcEEEEEeCCEEEEEEEecCccc-cc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCC
Q psy16847 1 MEAVKQGSATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDT 77 (208)
Q Consensus 1 ~~av~~G~tvigi~~~dgVVla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 77 (208)
+||+++|+|+|||+++||||||+|+|.+++ +. ++.+|||+|++|++|+++|+.+|++.+.++++.+++.|++.++++
T Consensus 59 ~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~~ 138 (294)
T 1q5r_H 59 GDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVP 138 (294)
T ss_dssp -CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCCC
Confidence 478999999999999999999999999985 43 678999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCC-C-----cEEEEECCCCceeec--eEEeeCCCcHHHHHHHHH
Q psy16847 78 LPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-G-----PHIYQTCPSSNYYDV--KAMAIGSRSQSARTYLEK 149 (208)
Q Consensus 78 i~~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~-g-----~~ly~vd~~G~~~~~--~~~a~G~~~~~~~~~Le~ 149 (208)
++++.+++.|++++|.++++. +|||++++||+|||++ | |+||++||+|++.++ ++.|+|+|++.++++||+
T Consensus 139 isv~~la~~la~~l~~~~~~~-~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le~ 217 (294)
T 1q5r_H 139 LTFDGKANRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKK 217 (294)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH-TTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhh-cCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHHH
Confidence 999999999999999988764 7999999999999975 6 999999999999999 899999999999999999
Q ss_pred hhCCCCCCCHHHHHHHHHHHHHhhCCCCcCCCCC--cE-----EEEEEeece
Q psy16847 150 RLADFPEASLEEIVKHGLRALRDTLPNDSELTTK--VR-----YSYVLTVSI 194 (208)
Q Consensus 150 ~~~~~~~~s~~eai~l~~~al~~~~~~d~~~~~~--~i-----~v~vi~~~~ 194 (208)
.|+ ++|+++||++++++||+.++++|. .++. ++ +|++|+++.
T Consensus 218 ~y~--~~ms~eEAi~la~~aL~~a~~rD~-~sG~~~~ir~i~~ev~vI~~~g 266 (294)
T 1q5r_H 218 IYS--PDSDEETALRAAIESLYDAADDDS-ATGGPDLTRGIYPTAVTITQAG 266 (294)
T ss_dssp HCC--SSCCHHHHHHHHHHHHHHHHHHCT-TTCCCBTTTTBCCEEEEEETTE
T ss_pred hcc--CCCCHHHHHHHHHHHHHHHHhhcc-ccCCchhhcccCCEEEEEECCC
Confidence 999 799999999999999999999984 4543 36 999999884
No 38
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=5.5e-44 Score=286.27 Aligned_cols=180 Identities=19% Similarity=0.278 Sum_probs=170.6
Q ss_pred CcEEEEEeCCEEEEEEEecCccc-cc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q psy16847 8 SATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 84 (208)
Q Consensus 8 ~tvigi~~~dgVVla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 84 (208)
+|+|||+++||||||+|+|.+++ +. ++.+||++|++|++|++||+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999986 43 5889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCCHHHHHH
Q psy16847 85 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVK 164 (208)
Q Consensus 85 ~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s~~eai~ 164 (208)
+.+++.+|.|++ +||++++||||||++||+||.+||+|++.++++.|+|+|++.++++||++|+ ++|+++||++
T Consensus 81 ~~l~~~~~~~r~----~~~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~--~~~s~eea~~ 154 (204)
T 1iru_L 81 KLLANMVYQYKG----MGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYS--YDLEVEQAYD 154 (204)
T ss_dssp HHHHHHHHTTTT----SCCCBEEEEEEECSSSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCC--TTCCHHHHHH
T ss_pred HHHHHHHHHhCC----CCeeEEEEEEEEeCCCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCC--CCCCHHHHHH
Confidence 999999987653 4899999999999889999999999999999999999999999999999999 7999999999
Q ss_pred HHHHHHHhhCCCCcCCCCCcEEEEEEeece
Q psy16847 165 HGLRALRDTLPNDSELTTKVRYSYVLTVSI 194 (208)
Q Consensus 165 l~~~al~~~~~~d~~~~~~~i~v~vi~~~~ 194 (208)
++++||+.+.+|| ..++++++|++|+++.
T Consensus 155 l~~~al~~~~~rd-~~s~~~i~v~vi~~~g 183 (204)
T 1iru_L 155 LARRAIYQATYRD-AYSGGAVNLYHVREDG 183 (204)
T ss_dssp HHHHHHHHHHHHB-TTCCSEEEEEEECSSC
T ss_pred HHHHHHHHHHHhC-ccCCCceEEEEEeCCc
Confidence 9999999999999 4799999999999873
No 39
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=9.1e-44 Score=288.67 Aligned_cols=179 Identities=20% Similarity=0.188 Sum_probs=170.3
Q ss_pred CcEEEEEeCCEEEEEEEecCccccc---ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q psy16847 8 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 84 (208)
Q Consensus 8 ~tvigi~~~dgVVla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 84 (208)
+|+|||+++||||||+|+|.++++. ++.+||++|+||++|+++|+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 6899999999999999999999863 4789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCCHHHHHH
Q psy16847 85 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVK 164 (208)
Q Consensus 85 ~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s~~eai~ 164 (208)
+++++.++.| +|||++++||||||++||+||.+||+|++.++++.|+|+|++.++++||+.|+ ++|+++||++
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~ms~eeA~~ 153 (222)
T 1ryp_I 81 QMLKQHLFKY-----QGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWK--QDLTKEEAIK 153 (222)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCC--SSCCHHHHHH
T ss_pred HHHHHHHhhc-----CCCCCeeEEEEEEeCCCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCC--CCcCHHHHHH
Confidence 9999998654 37999999999999988999999999999999999999999999999999999 7999999999
Q ss_pred HHHHHHHhhCCCCcCCCCCcEEEEEEeece
Q psy16847 165 HGLRALRDTLPNDSELTTKVRYSYVLTVSI 194 (208)
Q Consensus 165 l~~~al~~~~~~d~~~~~~~i~v~vi~~~~ 194 (208)
++++||+.+++|| ..++.+++|++|+++.
T Consensus 154 la~~al~~~~~~d-~~sg~~i~v~vi~~~g 182 (222)
T 1ryp_I 154 LASDAIQAGIWND-LGSGSNVDVCVMEIGK 182 (222)
T ss_dssp HHHHHHHHHHHHC-TTCCSCEEEEEEETTS
T ss_pred HHHHHHHHHHhcc-ccCCCcEEEEEEECCC
Confidence 9999999999999 4789999999999986
No 40
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=1.2e-43 Score=285.97 Aligned_cols=180 Identities=18% Similarity=0.258 Sum_probs=170.9
Q ss_pred CcEEEEEeCCEEEEEEEecCccc-cc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q psy16847 8 SATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 84 (208)
Q Consensus 8 ~tvigi~~~dgVVla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 84 (208)
+|+|||+++||||||+|+|.+++ +. ++.+||++|++|++|++||+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999986 43 5889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCccceeeEEEEEe-CCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCCHHHHH
Q psy16847 85 SIVGNKMQVCTQRYDKRPYGVGLLVAGYD-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIV 163 (208)
Q Consensus 85 ~~l~~~~~~~t~~~~~rP~~v~~ll~G~d-~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s~~eai 163 (208)
+++++.+|.|++. ||++++|||||| +.||+||.+||+|++.++++.|+|+|++.++++||+.|+ ++|+++||+
T Consensus 81 ~~l~~~~~~~~~~----p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~~s~eea~ 154 (212)
T 1ryp_L 81 KILSNLVYQYKGA----GLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYK--WDLSVEDAL 154 (212)
T ss_dssp HHHHHHHHHTTTS----CCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCC--TTCCHHHHH
T ss_pred HHHHHHHHhhCCC----CceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCC--CCCCHHHHH
Confidence 9999999888753 999999999999 567999999999999999999999999999999999999 799999999
Q ss_pred HHHHHHHHhhCCCCcCCCCCcEEEEEEeece
Q psy16847 164 KHGLRALRDTLPNDSELTTKVRYSYVLTVSI 194 (208)
Q Consensus 164 ~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~ 194 (208)
+++++||+.+.+|| ..++.+++|++|+++.
T Consensus 155 ~la~~al~~~~~rd-~~s~~~i~v~vi~~~g 184 (212)
T 1ryp_L 155 YLGKRSILAAAHRD-AYSGGSVNLYHVTEDG 184 (212)
T ss_dssp HHHHHHHHHHHHHB-TTCCSEEEEEEEETTE
T ss_pred HHHHHHHHHHHHhc-cccCCceEEEEEcCCc
Confidence 99999999999999 5899999999999983
No 41
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=1.5e-43 Score=283.04 Aligned_cols=190 Identities=19% Similarity=0.248 Sum_probs=172.2
Q ss_pred CcEEEEEeCCEEEEEEEecCccc-cc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q psy16847 8 SATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 84 (208)
Q Consensus 8 ~tvigi~~~dgVVla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 84 (208)
+|+|||+++||||||+|+|.+++ +. ++.+||++|++|++++++|+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 81 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA 81 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 68999999999999999999986 43 6889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCccceeeEEEEEeC-CCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCCHHHHH
Q psy16847 85 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIV 163 (208)
Q Consensus 85 ~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~-~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s~~eai 163 (208)
+++++.+. |..+ .+|||++++||||||+ +||+||.+||+|++.++++.|+|++++.++++||+.|+ ++|+++||+
T Consensus 82 ~~~~~~l~-~~~~-~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~~s~eea~ 157 (201)
T 1iru_K 82 NFTRRNLA-DCLR-SRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYT--PTISRERAV 157 (201)
T ss_dssp HHHHHHHH-HHHT-SSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCC--TTCCHHHHH
T ss_pred HHHHHHHH-HHHh-cCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhccc--CCCCHHHHH
Confidence 99887652 2222 2379999999999997 67999999999999999999999999999999999999 799999999
Q ss_pred HHHHHHHHhhCCCCcCCCCCcEEEEEEeec-eeecCCCCc
Q psy16847 164 KHGLRALRDTLPNDSELTTKVRYSYVLTVS-IHSTSTYPN 202 (208)
Q Consensus 164 ~l~~~al~~~~~~d~~~~~~~i~v~vi~~~-~~~~~~~~~ 202 (208)
+++++||+.+.+|| ..++.+++|++|+++ ++..+++++
T Consensus 158 ~l~~~al~~a~~rd-~~sg~~i~v~vi~~~g~~~~~~~~~ 196 (201)
T 1iru_K 158 ELLRKCLEELQKRF-ILNLPTFSVRIIDKNGIHDLDNISF 196 (201)
T ss_dssp HHHHHHHHHHHHTB-CBCCCCEEEEEEETTEEECCCCBCC
T ss_pred HHHHHHHHHHHhhc-cccCCceEEEEEcCCCeEEeecccC
Confidence 99999999999999 479999999999999 555554543
No 42
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=3.7e-43 Score=287.17 Aligned_cols=179 Identities=20% Similarity=0.206 Sum_probs=169.6
Q ss_pred CcEEEEEeCCEEEEEEEecCccccc---ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q psy16847 8 SATVGLKNKTHAVIIALKRAASELA---AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 84 (208)
Q Consensus 8 ~tvigi~~~dgVVla~d~~~~~~l~---~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 84 (208)
+|+|||+++||||||+|+|.++++. ++.+||++|++|++|+++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 6899999999999999999999864 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeeceEEeeCCCcHHHHHHHHHhhCCCCCCCHHHHHH
Q psy16847 85 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVK 164 (208)
Q Consensus 85 ~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~~~s~~eai~ 164 (208)
+++++.++.| .+||++++||||||++||+||.+||+|++.++++.|+|+|++.++++||+.|+ ++|+++||++
T Consensus 81 ~~l~~~l~~~-----~~~~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~ms~eeA~~ 153 (234)
T 1iru_I 81 RMLKQMLFRY-----RGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFR--PDMEEEEAKN 153 (234)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEECSSCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCC--TTCCHHHHHT
T ss_pred HHHHHHHHhc-----CCCCceeEEEEEEcCCCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhcc--CCCCHHHHHH
Confidence 9999988654 25999999999999889999999999999999999999999999999999999 7999999999
Q ss_pred HHHHHHHhhCCCCcCCCCCcEEEEEEeece
Q psy16847 165 HGLRALRDTLPNDSELTTKVRYSYVLTVSI 194 (208)
Q Consensus 165 l~~~al~~~~~~d~~~~~~~i~v~vi~~~~ 194 (208)
++++||+.+.++| ..++.+++|++|+++.
T Consensus 154 la~~al~~a~~~d-~~sg~~i~v~vi~k~g 182 (234)
T 1iru_I 154 LVSEAIAAGIFND-LGSGSNIDLCVISKNK 182 (234)
T ss_dssp HHHHHHHHHHHHC-TTCCSCEEEEEEETTE
T ss_pred HHHHHHHHHHHhc-ccCCCCEEEEEEECCc
Confidence 9999999999999 4789999999999983
No 43
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=1.2e-42 Score=284.38 Aligned_cols=183 Identities=21% Similarity=0.201 Sum_probs=170.3
Q ss_pred CcEEEEEeCCEEEEEEEecCccc-cc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q psy16847 8 SATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 84 (208)
Q Consensus 8 ~tvigi~~~dgVVla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 84 (208)
+|+|||+++||||||+|+|.+++ +. ++.+||++|+++++|++||+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 68999999999999999999985 43 5789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCccceeeEEEEEeCC-C-----cEEEEECCCCceeec--eEEeeCCCcHHHHHHHHHhhCCCCC
Q psy16847 85 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-G-----PHIYQTCPSSNYYDV--KAMAIGSRSQSARTYLEKRLADFPE 156 (208)
Q Consensus 85 ~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~-g-----~~ly~vd~~G~~~~~--~~~a~G~~~~~~~~~Le~~~~~~~~ 156 (208)
+.|+++++.++++. +|||++++||||||++ | |+||.+||+|++.++ ++.|+|+|++.++++||+.|+ ++
T Consensus 81 ~~l~~~~~~~~~~~-~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~--~~ 157 (235)
T 1q5q_H 81 NRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYS--PD 157 (235)
T ss_dssp HHHHHHHHTTHHHH-TTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCC--TT
T ss_pred HHHHHHHHHHHHhh-hcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcC--CC
Confidence 99999999888764 7999999999999975 7 999999999999999 999999999999999999999 89
Q ss_pred CCHHHHHHHHHHHHHhhCCCCcCCCCC-c-E-----EEEEEeece
Q psy16847 157 ASLEEIVKHGLRALRDTLPNDSELTTK-V-R-----YSYVLTVSI 194 (208)
Q Consensus 157 ~s~~eai~l~~~al~~~~~~d~~~~~~-~-i-----~v~vi~~~~ 194 (208)
|+++||++++++||..+.+||. .++. + + +|++|+++.
T Consensus 158 ms~eeA~~la~~al~~a~~~d~-~sg~~~~i~~~~~ev~vi~~~g 201 (235)
T 1q5q_H 158 SDEETALRAAIESLYDAADDDS-ATGGPDLTRGIYPTAVTITQAG 201 (235)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCT-TTCCCBTTTTBCCEEEEEETTE
T ss_pred CCHHHHHHHHHHHHHHHHhhCc-ccCCcccccccccEEEEEeCCC
Confidence 9999999999999999999984 4543 2 3 999999884
No 44
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=1.7e-42 Score=291.05 Aligned_cols=187 Identities=20% Similarity=0.171 Sum_probs=158.2
Q ss_pred cccCCcEEEEEeCCEEEEEEEecCcccc-c--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Q psy16847 4 VKQGSATVGLKNKTHAVIIALKRAASEL-A--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPV 80 (208)
Q Consensus 4 v~~G~tvigi~~~dgVVla~d~~~~~~l-~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 80 (208)
+++|+|+|||+++||||||+|+|.+++. . ++.+||++|++|++|+++|..+|++.+.++++.+++.|++.++.++++
T Consensus 54 v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v 133 (291)
T 2jay_A 54 LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTF 133 (291)
T ss_dssp ----CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCH
Confidence 6899999999999999999999999983 2 578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCC-C-----cEEEEECCCCcee--eceEEeeCCCcHHHHHHHHHhhC
Q psy16847 81 FRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-G-----PHIYQTCPSSNYY--DVKAMAIGSRSQSARTYLEKRLA 152 (208)
Q Consensus 81 ~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~-g-----~~ly~vd~~G~~~--~~~~~a~G~~~~~~~~~Le~~~~ 152 (208)
+.+++.++++++.|++ .++|||++++||||||++ + |+||++||+|++. ++++.|+|+|++.++++||+.|+
T Consensus 134 ~~la~~la~~l~~~~~-~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~ 212 (291)
T 2jay_A 134 AGKINRLAIMVRGNLA-AAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYS 212 (291)
T ss_dssp HHHHHHHHHHHHTCHH-HHHHTCCCEEEEEEECTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhhh-hhccccceeEEEEEEeCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHHHHHhcC
Confidence 9999999999988865 457899999999999975 4 8999999999998 88999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCcCCCCCc--E-----EEEEEeece
Q psy16847 153 DFPEASLEEIVKHGLRALRDTLPNDSELTTKV--R-----YSYVLTVSI 194 (208)
Q Consensus 153 ~~~~~s~~eai~l~~~al~~~~~~d~~~~~~~--i-----~v~vi~~~~ 194 (208)
++|+++||++++++||+.++++|. .++.. + +|++|+++.
T Consensus 213 --~~ms~eEAi~la~~aL~~a~~~D~-~sg~~e~vr~~~~~v~vi~~dg 258 (291)
T 2jay_A 213 --QVTDGDSGLRVAVEALYDAADDDS-ATGGPDLVRGIFPTAVIIDADG 258 (291)
T ss_dssp --GCCSHHHHHHHHHHHHHHC-----------------CCEEEEEETTE
T ss_pred --CCCCHHHHHHHHHHHHHHHHhhCC-CCCCcccccccCCEEEEEECCC
Confidence 899999999999999999999984 45542 2 699999983
No 45
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=5e-42 Score=273.78 Aligned_cols=178 Identities=17% Similarity=0.165 Sum_probs=165.0
Q ss_pred CcEEEEEeCCEEEEEEEecCccc-cc--ccccceEEEcCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Q psy16847 8 SATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLI 84 (208)
Q Consensus 8 ~tvigi~~~dgVVla~d~~~~~~-l~--~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 84 (208)
+|+|||+++||||||+|+|.+++ +. ++.+||++|++|++|+++|+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999988 42 6889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCccceeeEEEEEeC-CCcEEEEECCCCceeece-EEeeCCCcHHHHHHHHHhhCCCCCCCHHHH
Q psy16847 85 SIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AGPHIYQTCPSSNYYDVK-AMAIGSRSQSARTYLEKRLADFPEASLEEI 162 (208)
Q Consensus 85 ~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~-~g~~ly~vd~~G~~~~~~-~~a~G~~~~~~~~~Le~~~~~~~~~s~~ea 162 (208)
+++++.++.+ +|||++++||||||+ +||+||+ |+|++.+++ ++++|++++.++++||+.|+ ++|+++||
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~--~~ms~eea 151 (199)
T 3unf_N 81 NVVKNISYKY-----REDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYK--PGMTPEEC 151 (199)
T ss_dssp HHHHHHHHHT-----TTTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCC--SSCCHHHH
T ss_pred HHHHHHHHhc-----CCCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcC--CCCCHHHH
Confidence 9999998654 469999999999997 5799999 999987765 55679999999999999999 89999999
Q ss_pred HHHHHHHHHhhCCCCcCCCCCcEEEEEEeecee
Q psy16847 163 VKHGLRALRDTLPNDSELTTKVRYSYVLTVSIH 195 (208)
Q Consensus 163 i~l~~~al~~~~~~d~~~~~~~i~v~vi~~~~~ 195 (208)
++++++||+.+.+|| ..++++++|++|+++..
T Consensus 152 ~~la~~al~~~~~~d-~~sg~~i~v~vi~~~g~ 183 (199)
T 3unf_N 152 RRFTTNAITLAMNRD-GSSGGVIYLVTITAAGV 183 (199)
T ss_dssp HHHHHHHHHHHHHHC-TTCCSCEEEEEECSSCE
T ss_pred HHHHHHHHHHHHHhc-cccCCCeEEEEEcCCCE
Confidence 999999999999999 47999999999999853
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=3e-37 Score=242.82 Aligned_cols=168 Identities=15% Similarity=0.042 Sum_probs=147.9
Q ss_pred ccCCcEEEEEeCCEEEEEEEecCccc-c-c--ccccceEEE-cCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q psy16847 5 KQGSATVGLKNKTHAVIIALKRAASE-L-A--AHQKKIIVI-DDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLP 79 (208)
Q Consensus 5 ~~G~tvigi~~~dgVVla~d~~~~~~-l-~--~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 79 (208)
.+|+|+|||+++||||||+|+|.+.+ + . ++.+||++| ++|++|+++|..+|++.+.++++.+++.|+ + +
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g---~ 76 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G---N 76 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T---C
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C---C
Confidence 68999999999999999999999986 4 4 578999999 999999999999999999999999999987 3 2
Q ss_pred HHHHHHHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceee--ceEEeeCCCcHHHHHHHHHhhCCCC--
Q psy16847 80 VFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYD--VKAMAIGSRSQSARTYLEKRLADFP-- 155 (208)
Q Consensus 80 ~~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~--~~~~a~G~~~~~~~~~Le~~~~~~~-- 155 (208)
+.+.++.+.+.++++.++|||++++||+ +||+||.+||+|++.+ +++.|+|+|++.++++||+.|+ +
T Consensus 77 ---~~~~~~~l~~~~~~~~~~rp~~~~~lva----d~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~--~~~ 147 (180)
T 2z3b_A 77 ---LKRAAVELAKEWRSDKVLRKLEAMLIVM----NQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKK--HAG 147 (180)
T ss_dssp ---HHHHHHHHHHHHHHCTTGGGCCCCEEEE----CSSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHH--HHG
T ss_pred ---hHHHHHHHHHHHHhhhCcCcceEEEEEE----cCCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhh--ccC
Confidence 2333334445566677889999999999 3799999999999998 4999999999999999999998 6
Q ss_pred -CCCHHHHHHHHHHHHHhhCCCCcCCCCCcEEEEEEe
Q psy16847 156 -EASLEEIVKHGLRALRDTLPNDSELTTKVRYSYVLT 191 (208)
Q Consensus 156 -~~s~~eai~l~~~al~~~~~~d~~~~~~~i~v~vi~ 191 (208)
+|+.|| ++.+||+.+.+|| ..++++++|++|+
T Consensus 148 ~~mt~ee---l~~~al~~a~~rd-~~sg~~i~v~~i~ 180 (180)
T 2z3b_A 148 ESMSASE---IARAALETAGEIC-VYTNDQIILEELE 180 (180)
T ss_dssp GGCCHHH---HHHHHHHHHHHHC-TTCCSCCEEEEEC
T ss_pred CCCCHHH---HHHHHHHHHHHhc-CccCCeEEEEEEC
Confidence 899999 4679999999999 5899999999983
No 47
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=6e-36 Score=234.10 Aligned_cols=166 Identities=14% Similarity=0.050 Sum_probs=143.8
Q ss_pred CcEEEEEeCCEEEEEEEecCccc-c--cccccceEEE-cCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q psy16847 8 SATVGLKNKTHAVIIALKRAASE-L--AAHQKKIIVI-DDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRL 83 (208)
Q Consensus 8 ~tvigi~~~dgVVla~d~~~~~~-l--~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 83 (208)
+|+|||+++||||||+|+|.+++ + .++.+||++| ++|++++++|+.+|++.+.++++.+++.|++ ++...
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~ 74 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKS 74 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHH
Confidence 58999999999999999999987 3 2688999999 9999999999999999999999999999875 34344
Q ss_pred HHHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeece---EEeeCCCcHHHHHHHHHhhCCCCCCCHH
Q psy16847 84 ISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVK---AMAIGSRSQSARTYLEKRLADFPEASLE 160 (208)
Q Consensus 84 a~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~---~~a~G~~~~~~~~~Le~~~~~~~~~s~~ 160 (208)
+..++ +.++++.+.||+ +++++|+| ||+||.+||+|++.+++ +.|+|+|++.++++||+.|+. ++|+.+
T Consensus 75 ~~~l~---~~~~~~~~~r~~--~~~l~g~d--~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~-~~mt~~ 146 (174)
T 1g3k_A 75 AVELA---KDWRTDRALRKL--EAMLIVAD--EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVEN-TELSAH 146 (174)
T ss_dssp HHHHH---HHHHHSTTGGGC--CCEEEEEC--SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHH-CCCCHH
T ss_pred HHHHH---HHHHhccCcCcc--eEEEEEEC--CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhccc-CCCCHH
Confidence 44444 445555566775 57888887 79999999999999988 999999999999999999983 589855
Q ss_pred HHHHHHHHHHHhhCCCCcCCCCCcEEEEEEe
Q psy16847 161 EIVKHGLRALRDTLPNDSELTTKVRYSYVLT 191 (208)
Q Consensus 161 eai~l~~~al~~~~~~d~~~~~~~i~v~vi~ 191 (208)
+++++||+.+.+|| ..++++++|++|+
T Consensus 147 ---~l~~~al~~a~~rd-~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 147 ---EIVEKSLRIAGDIC-VFTNTNFTIEELP 173 (174)
T ss_dssp ---HHHHHHHHHHHHHC-TTCCSCCEEEEEC
T ss_pred ---HHHHHHHHHHHHhc-cccCCceEEEEec
Confidence 79999999999999 4899999999996
No 48
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=9.2e-36 Score=232.37 Aligned_cols=165 Identities=16% Similarity=0.057 Sum_probs=142.7
Q ss_pred CcEEEEEeCCEEEEEEEecCccc-cc--ccccceEEE-cCceeEeecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Q psy16847 8 SATVGLKNKTHAVIIALKRAASE-LA--AHQKKIIVI-DDHMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRL 83 (208)
Q Consensus 8 ~tvigi~~~dgVVla~d~~~~~~-l~--~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 83 (208)
+|+|||+++||||||+|+|.+++ +. ++.+||++| ++|++++++|..+|++.+.++++.+++.|+.+ .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 68999999999999999999986 32 578999999 99999999999999999999999999998743 23334
Q ss_pred HHHHHHHHHHHhhccCCCccceeeEEEEEeCCCcEEEEECCCCceeece--EEeeCCCcHHHHHHHHHhhCCCCCCCHHH
Q psy16847 84 ISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVK--AMAIGSRSQSARTYLEKRLADFPEASLEE 161 (208)
Q Consensus 84 a~~l~~~~~~~t~~~~~rP~~v~~ll~G~d~~g~~ly~vd~~G~~~~~~--~~a~G~~~~~~~~~Le~~~~~~~~~s~~e 161 (208)
++ +.+.++++.+.|||++++|++ | ||+||.+||+|++.+++ +.|+|+|++.++++||+.|+. ++|+.
T Consensus 76 ~~----l~~~~~~~~~~~~~~~~~lv~--D--~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~-~~ms~-- 144 (171)
T 1m4y_A 76 VE----LAKDWRTDRVLRRLEALLLVA--D--KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRN-TDLSA-- 144 (171)
T ss_dssp HH----HHHHHHHCTTGGGCCCEEEEE--C--SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHH-CCCCH--
T ss_pred HH----HHHHHHHhCCCCceEEEEEEE--c--CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhccc-CCCCH--
Confidence 33 333455555678999999888 5 89999999999999988 999999999999999999983 48986
Q ss_pred HHHHHHHHHHhhCCCCcCCCCCcEEEEEE
Q psy16847 162 IVKHGLRALRDTLPNDSELTTKVRYSYVL 190 (208)
Q Consensus 162 ai~l~~~al~~~~~~d~~~~~~~i~v~vi 190 (208)
++++++||+.+.+|| ..++++++|+++
T Consensus 145 -~~l~~~al~~a~~rd-~~sg~~i~v~~~ 171 (171)
T 1m4y_A 145 -REIVEKAMTIAGEIC-IYTNQNIVIEEV 171 (171)
T ss_dssp -HHHHHHHHHHHHHHC-TTCCSCCEEEEC
T ss_pred -HHHHHHHHHHHHHhC-cccCCeEEEEEC
Confidence 678999999999999 589999999874
No 49
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=35.84 E-value=44 Score=19.87 Aligned_cols=35 Identities=14% Similarity=0.198 Sum_probs=23.5
Q ss_pred HHHHHHHhhCCCCCCCH--HHHHHHHHHHHHhhCCCCc
Q psy16847 143 ARTYLEKRLADFPEASL--EEIVKHGLRALRDTLPNDS 178 (208)
Q Consensus 143 ~~~~Le~~~~~~~~~s~--~eai~l~~~al~~~~~~d~ 178 (208)
+..||....++ ..++. .|.++.|++||.++++-|+
T Consensus 9 Ii~FL~~~~~~-~~~s~D~~ESleVAiqCi~~aF~v~~ 45 (52)
T 4gof_A 9 IIQFLHDQLRH-GGLSSDAQESLEVAIQCLETAFGVTV 45 (52)
T ss_dssp HHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHhccc-CCcCHhHHHHHHHHHHHHHHHcCCCc
Confidence 44566554332 34544 5689999999999996653
No 50
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=31.95 E-value=63 Score=21.62 Aligned_cols=35 Identities=9% Similarity=0.192 Sum_probs=24.2
Q ss_pred HHHHHHHhhCCCCCCCH--HHHHHHHHHHHHhhCCCCc
Q psy16847 143 ARTYLEKRLADFPEASL--EEIVKHGLRALRDTLPNDS 178 (208)
Q Consensus 143 ~~~~Le~~~~~~~~~s~--~eai~l~~~al~~~~~~d~ 178 (208)
+..||...... ..++. .|.++.|++||.++++-|+
T Consensus 26 IIdFL~~sv~~-~~ls~D~~ESLEVAIqCI~~AF~Vd~ 62 (92)
T 4asv_A 26 IVNYFSSIVEK-KEISEDGADSLNVAMDCISEAFGFER 62 (92)
T ss_dssp HHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHHTCCG
T ss_pred HHHHHHHhccc-CCcCHHHHHHHHHHHHHHHHHhCCCc
Confidence 45666655432 35554 5688999999999996653
No 51
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=29.80 E-value=78 Score=20.24 Aligned_cols=35 Identities=9% Similarity=0.192 Sum_probs=24.2
Q ss_pred HHHHHHHhhCCCCCCCH--HHHHHHHHHHHHhhCCCCc
Q psy16847 143 ARTYLEKRLADFPEASL--EEIVKHGLRALRDTLPNDS 178 (208)
Q Consensus 143 ~~~~Le~~~~~~~~~s~--~eai~l~~~al~~~~~~d~ 178 (208)
+..||....+. ..++. .|.++.|++||.++++-|+
T Consensus 14 Ii~FL~~~~~~-~~ls~D~~ESLeVAiqCI~~aF~v~~ 50 (74)
T 2lxb_A 14 IVNYFSSIVEK-KEISEDGADSLNVAMDCISEAFGFER 50 (74)
T ss_dssp HHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHhccc-CCcCHHHHHHHHHHHHHHHHHhCCCc
Confidence 45666665432 35554 5688999999999996653
No 52
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=23.51 E-value=48 Score=20.28 Aligned_cols=34 Identities=29% Similarity=0.500 Sum_probs=21.0
Q ss_pred eeCCCcHHHHHHHHHhhCCCCCCCHHHHHHHHHH
Q psy16847 135 AIGSRSQSARTYLEKRLADFPEASLEEIVKHGLR 168 (208)
Q Consensus 135 a~G~~~~~~~~~Le~~~~~~~~~s~~eai~l~~~ 168 (208)
+.|.....+...+++.....++.+.++.++.+++
T Consensus 26 aLGY~~~ea~kav~~v~~~~~~~~~e~lIr~ALk 59 (62)
T 1ixs_A 26 ALGFKEAQARAVVLDLLAQNPKARAQDLIKEALK 59 (62)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 4677777777777665310145677777666654
No 53
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=21.14 E-value=28 Score=28.58 Aligned_cols=34 Identities=6% Similarity=0.032 Sum_probs=23.6
Q ss_pred cEEEEECCCCceeec-eEEeeCCCcHHHHHHHHHh
Q psy16847 117 PHIYQTCPSSNYYDV-KAMAIGSRSQSARTYLEKR 150 (208)
Q Consensus 117 ~~ly~vd~~G~~~~~-~~~a~G~~~~~~~~~Le~~ 150 (208)
|..|.+|+.|.+... +..-.+...+.+...|++.
T Consensus 103 r~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~~ 137 (322)
T 4eo3_A 103 RSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRL 137 (322)
T ss_dssp CEEEEECTTSBEEEEEESCCSTTHHHHHHHHHHHH
T ss_pred cEEEEECCCCEEEEEEeCCCccccHHHHHHHHhhh
Confidence 678999999998763 3344555566666666654
Done!