RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16847
(208 letters)
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Length = 263
Score = 269 bits (690), Expect = 3e-92
Identities = 125/183 (68%), Positives = 159/183 (86%)
Query: 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILA 60
MEAVKQGSATVGLK+KTHAV++ALKRA SELAAHQKKI+ +D+H+G+S AGLTADAR+L
Sbjct: 26 MEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLC 85
Query: 61 RFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIY 120
FMR ECL+ ++ LPV RL+S++G+K Q+ TQRY +RPYGVGLL+AGYDD GPHI+
Sbjct: 86 NFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIF 145
Query: 121 QTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDSEL 180
QTCPS+NY+D +AM+IG+RSQSARTYLE+ +++F E +L E+VKHGLRALR+TLP + +L
Sbjct: 146 QTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDL 205
Query: 181 TTK 183
TTK
Sbjct: 206 TTK 208
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E*
1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E*
3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E*
3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Length = 233
Score = 250 bits (640), Expect = 6e-85
Identities = 86/185 (46%), Positives = 121/185 (65%), Gaps = 3/185 (1%)
Query: 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILA 60
+EA+KQGS TVGL++ THAV++ALKR A EL+++QKKII D+HMGLS AGL DAR+L+
Sbjct: 25 LEAIKQGSVTVGLRSNTHAVLVALKRNADELSSYQKKIIKCDEHMGLSLAGLAPDARVLS 84
Query: 61 RFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIY 120
++R +C L V R ++ +K Q TQ Y RPYGVGLL+ GYD +G H+
Sbjct: 85 NYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLL 144
Query: 121 QTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADF--PEASLEEIVKHGLRALRDTLPNDS 178
+ PS N ++ AIG+RSQ A+TYLE+ L F + + +E++K G+ A+ +L D
Sbjct: 145 EFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL-RDE 203
Query: 179 ELTTK 183
LT
Sbjct: 204 SLTVD 208
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Length = 248
Score = 242 bits (619), Expect = 2e-81
Identities = 61/182 (33%), Positives = 106/182 (58%), Gaps = 3/182 (1%)
Query: 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKIIVIDDHMGLSFAGLTADARI 58
EAVK+GS VG++ + V+ K++ ++L + +KI +DD++ ++FAGLTADARI
Sbjct: 23 QEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARI 82
Query: 59 LARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD-DAGP 117
+ R+EC +++ +D + V + + + Q TQ +RP+G+ L+ G+D D P
Sbjct: 83 VINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTP 142
Query: 118 HIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPND 177
+YQT PS Y+ KA AIG ++S R +LEK D + + +K ++AL + + +
Sbjct: 143 RLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQSG 202
Query: 178 SE 179
+
Sbjct: 203 GK 204
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Length = 233
Score = 240 bits (616), Expect = 2e-81
Identities = 53/185 (28%), Positives = 97/185 (52%), Gaps = 6/185 (3%)
Query: 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKIIVIDDHMGLSFAGLTADARI 58
+ AV G+ +VG+K V+ K+ S L + K+ I H+GL ++G+ D R+
Sbjct: 25 LAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRV 84
Query: 59 LARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPH 118
L R Y +++ +P +L+ V + MQ TQ RP+GV LL+ G+++ P+
Sbjct: 85 LVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPY 144
Query: 119 IYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 178
++Q+ PS Y+ KA A+G + +T+LEKR + LE+ + + L+++ +
Sbjct: 145 LFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRY--NEDLELEDAIHTAILTLKESF--EG 200
Query: 179 ELTTK 183
++T
Sbjct: 201 QMTED 205
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Length = 246
Score = 241 bits (617), Expect = 3e-81
Identities = 51/187 (27%), Positives = 92/187 (49%), Gaps = 6/187 (3%)
Query: 1 MEAVKQGSAT-VGLKNKTHAVIIALKRAASEL--AAHQKKIIVIDDHMGLSFAGLTADAR 57
+A+ QG T V ++ K AVI+ K+ +L ++ + I +++G G+TAD+R
Sbjct: 29 FKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSR 88
Query: 58 ILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD-DAG 116
+ R E N+KY + +PV L + + QV TQ + RP G +++ G D + G
Sbjct: 89 SQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQG 148
Query: 117 PHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPN 176
P +Y+ P+ Y KA A G + + ++LEK++ + + E+ V+ + L L
Sbjct: 149 PQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVL-- 206
Query: 177 DSELTTK 183
+
Sbjct: 207 SIDFKPS 213
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Length = 241
Score = 239 bits (612), Expect = 1e-80
Identities = 55/190 (28%), Positives = 93/190 (48%), Gaps = 11/190 (5%)
Query: 1 MEAVKQGSATVGLKNKTHAVIIALKRAASEL--AAHQKKIIVIDDHMGLSFAGLTADARI 58
+EA+K GS +G++ + KR S L + +KI+ ID H+G + +GL ADA+
Sbjct: 28 IEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKT 87
Query: 59 LARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDK-----RPYGVGLLVAGYD 113
L R+E N+ + + +T+ V + V N + RP+GV LL G D
Sbjct: 88 LIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVD 147
Query: 114 DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDT 173
+ GP ++ PS + A AIGS S+ A++ L++ +L+E +K L L+
Sbjct: 148 EKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELY--HKSMTLKEAIKSSLIILKQV 205
Query: 174 LPNDSELTTK 183
+ + +L
Sbjct: 206 M--EEKLNAT 213
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Length = 261
Score = 236 bits (604), Expect = 4e-79
Identities = 53/187 (28%), Positives = 97/187 (51%), Gaps = 6/187 (3%)
Query: 1 MEAVKQGSATVGLKNKTHAVIIALKRAASEL---AAHQKKIIVIDDHMGLSFAGLTADAR 57
MEA+ +G+ ++ A +R +L +KI +++ M S AG+T+DA
Sbjct: 25 MEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDAN 84
Query: 58 ILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD-DAG 116
+L +R+ Y +++ +P +L++ + + Q TQ KRP+GV LL G+D G
Sbjct: 85 VLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYG 144
Query: 117 PHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPN 176
+YQ+ PS NY KA IG+ S +A + L++ E +L+ + ++ L T+ +
Sbjct: 145 FQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDY-KEGEMTLKSALALAIKVLNKTM-D 202
Query: 177 DSELTTK 183
S+L+ +
Sbjct: 203 VSKLSAE 209
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A
1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A
3jse_A 3jtl_A
Length = 233
Score = 235 bits (601), Expect = 4e-79
Identities = 61/183 (33%), Positives = 95/183 (51%), Gaps = 4/183 (2%)
Query: 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKIIVIDDHMGLSFAGLTADARI 58
EAVK+GS +G+K ++I+ K+ S L +KI +IDD++ +GL ADAR+
Sbjct: 28 REAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARV 87
Query: 59 LARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPH 118
L F R+ K + + + L+ V ++MQ TQ RPYGV L+ AG D GP
Sbjct: 88 LVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPR 147
Query: 119 IYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 178
++ P+ + KA AIGS + ++LE+ +E V G++AL+ +L
Sbjct: 148 LFDCDPAGTINEYKATAIGSGKDAVVSFLEREY--KENLPEKEAVTLGIKALKSSLEEGE 205
Query: 179 ELT 181
EL
Sbjct: 206 ELK 208
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F*
1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F*
3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F*
3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Length = 244
Score = 235 bits (601), Expect = 6e-79
Identities = 60/191 (31%), Positives = 87/191 (45%), Gaps = 7/191 (3%)
Query: 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKIIVIDDHMGLSFAGLTADARI 58
++AV+ G+ ++G+K V K S+L Q KI V+D H+G ++GL D R
Sbjct: 24 VKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRH 83
Query: 59 LARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPH 118
L R E ++K +K +P+ +G +Q T RP+GV + G D G H
Sbjct: 84 LVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAH 143
Query: 119 IYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA-SLEEIVKHGLRA----LRDT 173
+Y PS +Y+ K A G QSA+ LEK + PE S E VK + D
Sbjct: 144 LYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDN 203
Query: 174 LPNDSELTTKV 184
D EL
Sbjct: 204 KEKDFELEISW 214
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 236 bits (605), Expect = 7e-79
Identities = 61/191 (31%), Positives = 89/191 (46%), Gaps = 7/191 (3%)
Query: 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQK--KIIVIDDHMGLSFAGLTADARI 58
++AV+ G+ ++G+K V K S+L QK KI V+D H+G ++GL D R
Sbjct: 28 VKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRH 87
Query: 59 LARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPH 118
L R E ++K +K +P+ +G +Q T RP+GV + G D G H
Sbjct: 88 LVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAH 147
Query: 119 IYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEA-SLEEIVKHGLRAL----RDT 173
+Y PS +Y+ K A G QSA+ LEK + PE S E VK + + D
Sbjct: 148 LYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDN 207
Query: 174 LPNDSELTTKV 184
D EL
Sbjct: 208 KEKDFELEISW 218
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G*
1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G*
3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G*
3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Length = 243
Score = 234 bits (599), Expect = 1e-78
Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 11/192 (5%)
Query: 1 MEAVKQGSAT-VGLKNKTHAVIIALKRAASEL--AAHQKKIIVIDDHMGLSFAGLTADAR 57
+A Q + + ++ K V+I+ K+ +L I I +G+ G DAR
Sbjct: 23 FKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPDAR 82
Query: 58 ILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD-DAG 116
A + E ++Y + +P L + N Q+ TQR RP GV L D + G
Sbjct: 83 NAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELG 142
Query: 117 PHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRL-----ADFPEASLEEIVKHGLRALR 171
P IY+T P+ Y KA A G + Q T LE E S E++V+ + +
Sbjct: 143 PSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMI 202
Query: 172 DTLPNDSELTTK 183
D L +E +
Sbjct: 203 DAL--GTEFSKN 212
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C*
1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C*
3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C*
3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Length = 241
Score = 232 bits (593), Expect = 8e-78
Identities = 67/185 (36%), Positives = 101/185 (54%), Gaps = 6/185 (3%)
Query: 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ---KKIIVIDDHMGLSFAGLTADAR 57
+EAVK+G+ VG+K K V+ +R+ +L + K+ ID H+ LSF+GL AD+R
Sbjct: 22 LEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSR 81
Query: 58 ILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD--DA 115
IL R+E +++ +D + V L V Q TQ RP+GV L+AG+D D
Sbjct: 82 ILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDD 141
Query: 116 GPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRL-ADFPEASLEEIVKHGLRALRDTL 174
P +YQT PS Y A IG S++ R +LEK P A++EE VK +R+L + +
Sbjct: 142 EPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVV 201
Query: 175 PNDSE 179
++
Sbjct: 202 QTGAK 206
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase,
protease, threonine protease; 4.10A {Methanocaldococcus
jannaschii}
Length = 264
Score = 232 bits (594), Expect = 1e-77
Identities = 55/185 (29%), Positives = 93/185 (50%), Gaps = 7/185 (3%)
Query: 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKIIVIDDHMGLSFAGLTADARI 58
EAV++G+ +G+ K V+ +R S+L + +KI IDDH+ + +GL ADAR+
Sbjct: 32 REAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLVADARV 91
Query: 59 LARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPH 118
L R+E Y+ + + + + L + + Q TQ RP+GV LL+AG D
Sbjct: 92 LIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEAR 151
Query: 119 IYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 178
+++T PS + KA AIGS LEK + +L+E ++ + AL +
Sbjct: 152 LFETDPSGALIEYKATAIGSGRPVVMELLEKEY--RDDITLDEGLELAITALTKA---NE 206
Query: 179 ELTTK 183
++ +
Sbjct: 207 DIKPE 211
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B
1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A*
2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A*
3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Length = 250
Score = 231 bits (592), Expect = 2e-77
Identities = 62/187 (33%), Positives = 99/187 (52%), Gaps = 8/187 (4%)
Query: 1 MEAVKQGSATVGLKNKTHAVIIALKRAASEL--AAHQKKIIVIDDHMGLSFAGLTADARI 58
+ AVKQG ++G+K VI K+++S L + K+ ++ +G ++G+ D R+
Sbjct: 25 LTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPDYRV 84
Query: 59 LARFMRMEC-LNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-G 116
L R +YK + + P L+S V MQ TQ RP+GV LL+AG+D+ G
Sbjct: 85 LVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNG 144
Query: 117 PHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPN 176
+YQ PS +Y+ KA AIG S +A+T+LEKR E LE+ + L L++++
Sbjct: 145 FSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRW--NDELELEDAIHIALLTLKESV-- 200
Query: 177 DSELTTK 183
+ E
Sbjct: 201 EGEFNGD 207
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B*
1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B*
3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B*
3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Length = 244
Score = 229 bits (585), Expect = 2e-76
Identities = 53/187 (28%), Positives = 95/187 (50%), Gaps = 7/187 (3%)
Query: 1 MEAVKQGSATVGLKNKTHAVIIALKRAASEL---AAHQKKIIVIDDHMGLSFAGLTADAR 57
+E++ +G+ V+ A ++ S L +K+ ++D + ++ AGLTADA
Sbjct: 25 LESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAE 84
Query: 58 ILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AG 116
IL R+ NY + + +PV L+ + + Q TQ RP+GV + AGYDD G
Sbjct: 85 ILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYG 144
Query: 117 PHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPN 176
+Y + PS NY KA+++G+ + +A+T L+ + +++ ++ L+ L T +
Sbjct: 145 YQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDY--KDDMKVDDAIELALKTLSKTT-D 201
Query: 177 DSELTTK 183
S LT
Sbjct: 202 SSALTYD 208
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D*
1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D*
3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D*
3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Length = 242
Score = 228 bits (584), Expect = 2e-76
Identities = 58/192 (30%), Positives = 92/192 (47%), Gaps = 13/192 (6%)
Query: 1 MEAVKQGSATVGLKNKTHAVIIALKRAASEL--AAHQKKIIVIDDHMGLSFAGLTADARI 58
+EA+K GS +G+ K V+ KRA S L + +KI+ ID H+G + +GLTADAR
Sbjct: 20 LEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARS 79
Query: 59 LARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQ------RYDKRPYGVGLLVAGY 112
+ R + + + + + V L V + + R RP+GV LL+AG+
Sbjct: 80 MIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGH 139
Query: 113 D-DAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALR 171
D D G ++ PS +Y A AIGS S+ A+ L +L+E L+ L+
Sbjct: 140 DADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEW--HSSLTLKEAELLVLKILK 197
Query: 172 DTLPNDSELTTK 183
+ + +L
Sbjct: 198 QVM--EEKLDEN 207
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A
{Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Length = 246
Score = 227 bits (581), Expect = 8e-76
Identities = 60/185 (32%), Positives = 97/185 (52%), Gaps = 7/185 (3%)
Query: 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQ--KKIIVIDDHMGLSFAGLTADARI 58
EAVK+G+ +G+K K ++IA KR S+L +KI ID+H+ + +GL ADAR+
Sbjct: 28 REAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLVADARV 87
Query: 59 LARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPH 118
L R+E + + + V L + + Q TQ RP+GV LL+AG ++ P
Sbjct: 88 LIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNE-VPK 146
Query: 119 IYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 178
+Y+T PS + KA AIG + + EK + S ++ + GL A+ ++ +S
Sbjct: 147 LYETDPSGALLEYKATAIGMGRMAVTEFFEKEY--RDDLSFDDAMVLGLVAMGLSI--ES 202
Query: 179 ELTTK 183
EL +
Sbjct: 203 ELVPE 207
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Length = 254
Score = 225 bits (576), Expect = 5e-75
Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 6/186 (3%)
Query: 1 MEAVKQGSATVGLKNKTHAVIIALKRAASEL--AAHQKKIIVIDDHMGLSFAGLTADARI 58
M+AV+ S +G++ K V K S+L K++ +D H+G++ AGL ADAR
Sbjct: 27 MKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARS 86
Query: 59 LARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD-DAGP 117
LA R E N++ +P+ L V + T RP+G ++ Y + G
Sbjct: 87 LADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGA 146
Query: 118 HIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPND 177
+Y PS Y AIG Q+A+T +EK E + +IVK + + ++
Sbjct: 147 QLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQ--MKEMTCRDIVKEVAKIIYIVH-DE 203
Query: 178 SELTTK 183
+
Sbjct: 204 VKDKAF 209
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome
endopeptidase comple mycobacterium tuberculosis,
hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis}
PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D
3hf9_A 3mfe_D
Length = 248
Score = 143 bits (362), Expect = 6e-43
Identities = 35/183 (19%), Positives = 67/183 (36%), Gaps = 12/183 (6%)
Query: 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILA 60
+ + + + V L + +A + S +KI + D +G + AG + L
Sbjct: 21 RKGIARAKSVVALAYAGGVLFVAENPSRS-----LQKISELYDRVGFAAAGKFNEFDNLR 75
Query: 61 RFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGY----DDAG 116
R YA+ R ++ V + +PY V L VA +
Sbjct: 76 RGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKR 135
Query: 117 PHIYQTCPSSNYYDV-KAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLP 175
P +Y+ + D + +G ++ L++ A ASL + ++ + ALR
Sbjct: 136 PELYRITYDGSIADEPHFVVMGGTTEPIANALKESYA--ENASLTDALRIAVAALRAGSA 193
Query: 176 NDS 178
+ S
Sbjct: 194 DTS 196
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB:
2h6j_A 1q5r_A
Length = 259
Score = 134 bits (338), Expect = 3e-39
Identities = 30/186 (16%), Positives = 69/186 (37%), Gaps = 16/186 (8%)
Query: 1 MEAVKQGSATVGLKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILA 60
+ + +G + V L + + +A + + K+ + D +G + G + L
Sbjct: 21 RKGIARGRSVVVLTFRDGVLFVAENPSTA-----LHKVSELYDRLGFAAVGKYNEFENLR 75
Query: 61 RFMRMECLNYKYAH-KDTLPVFRLISIVGNKM-QVCTQRYDKRPYGVGLLVAG----YDD 114
R + Y++ + + L + + + T++ +PY V + VA
Sbjct: 76 RAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQP--KPYEVEICVAEVGRVGSP 133
Query: 115 AGPHIYQTCPSSNYYDVK-AMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDT 173
P +Y+ + D + + +G ++ T + + + LE V + ALR
Sbjct: 134 KAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYR--ADLDLEAAVGIAVNALRQG 191
Query: 174 LPNDSE 179
+ E
Sbjct: 192 GAGEGE 197
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_H* 3nzx_H*
Length = 261
Score = 117 bits (296), Expect = 7e-33
Identities = 38/180 (21%), Positives = 71/180 (39%), Gaps = 10/180 (5%)
Query: 2 EAVKQGSATVGLKNKTHAVIIALKRA-ASELAAHQ--KKIIVIDDHMGLSFAGLTADARI 58
+A G+ VG+K VI A R+ + A + K+ I + + AG AD
Sbjct: 24 KATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEA 83
Query: 59 LARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPH 118
+ + + + V + ++ + +Y + G L+VAG D G H
Sbjct: 84 VTQLIGSNIELHSLYTSREPRVVSALQMLKQHLF----KY-QGHIGAYLIVAGVDPTGSH 138
Query: 119 IYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 178
++ + +++GS S +A LE + + EE +K A++ + ND
Sbjct: 139 LFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWK--QDLTKEEAIKLASDAIQAGIWNDL 196
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H
1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Length = 217
Score = 111 bits (279), Expect = 1e-30
Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 12/181 (6%)
Query: 2 EAVKQGSATVGLKNKTHAVIIAL-KRA-ASELAAHQ--KKIIVIDDHMGLSFAGLTADAR 57
+ ++ G+ TVG+ K AVI+A +R H+ KK+ ID + G++ AGL DA+
Sbjct: 3 QTLETGTTTVGITLK-DAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQ 61
Query: 58 ILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGP 117
+L R+M+ E Y+ + +P+ + +++ N + + PY V LLV G D P
Sbjct: 62 VLVRYMKAELELYRLQRRVNMPIEAVATLLSNML----NQVKYMPYMVQLLVGGIDT-AP 116
Query: 118 HIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPND 177
H++ + + + GS S LE + + + +++E V +RA+ D
Sbjct: 117 HVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYS--EKMTVDEGVDLVIRAISAAKQRD 174
Query: 178 S 178
S
Sbjct: 175 S 175
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_H
Length = 234
Score = 110 bits (278), Expect = 2e-30
Identities = 41/173 (23%), Positives = 70/173 (40%), Gaps = 12/173 (6%)
Query: 10 TVGLKNKTHAVIIAL-KRAAS-ELAAHQ--KKIIVIDDHMGLSFAGLTADARILARFMRM 65
GL + VI+ RA + + A + +KI I + AG+ AD + R
Sbjct: 3 IAGLVFR-DGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAAS 61
Query: 66 ECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPS 125
+ + + V + I+ + RY + G L+V G D GP +Y+ P
Sbjct: 62 KMELHALSTGREPRVATVTRILRQTLF----RY-QGHVGASLVVGGVDLNGPQLYEVHPH 116
Query: 126 SNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 178
+Y + A+GS +A LE R P +LE + + A+ + +D
Sbjct: 117 GSYSRLPFTALGSGQGAAVALLEDRFQ--PNMTLEAAQELLVEAITAGILSDL 167
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H*
1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H*
2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H*
3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Length = 222
Score = 106 bits (266), Expect = 9e-29
Identities = 36/172 (20%), Positives = 67/172 (38%), Gaps = 10/172 (5%)
Query: 10 TVGLKNKTHAVIIALKRA-ASELAAHQ--KKIIVIDDHMGLSFAGLTADARILARFMRME 66
VG+K VI A R+ + A + K+ I + + AG AD + + +
Sbjct: 3 IVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSN 62
Query: 67 CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSS 126
+ V + ++ + +Y + G L+VAG D G H++
Sbjct: 63 IELHSLYTSREPRVVSALQMLKQHLF----KY-QGHIGAYLIVAGVDPTGSHLFSIHAHG 117
Query: 127 NYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 178
+ +++GS S +A LE + + EE +K A++ + ND
Sbjct: 118 STDVGYYLSLGSGSLAAMAVLESHWK--QDLTKEEAIKLASDAIQAGIWNDL 167
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_H* 3une_H
Length = 234
Score = 101 bits (254), Expect = 8e-27
Identities = 35/173 (20%), Positives = 64/173 (36%), Gaps = 12/173 (6%)
Query: 10 TVGLKNKTHAVIIAL-KRAAS-ELAAHQ--KKIIVIDDHMGLSFAGLTADARILARFMRM 65
G+ K +++ RA + A + KI I ++ AG AD + + +
Sbjct: 3 IAGVVYK-DGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISS 61
Query: 66 ECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPS 125
+ + V ++ + RY + G L++ G D GPH+Y P
Sbjct: 62 NLELHSLSTGRLPRVVTANRMLKQMLF----RY-RGYIGAALVLGGVDVTGPHLYSIYPH 116
Query: 126 SNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 178
+ + + +GS S +A E + P+ EE A+ + ND
Sbjct: 117 GSTDKLPYVTMGSGSLAAMAVFEDKFR--PDMEEEEAKNLVSEAIAAGIFNDL 167
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_K* 3nzx_K*
Length = 287
Score = 96.0 bits (239), Expect = 3e-24
Identities = 39/182 (21%), Positives = 74/182 (40%), Gaps = 12/182 (6%)
Query: 2 EAVKQGSATVGLKNKTHAVIIAL-KRA-ASELAAHQ--KKIIVIDDHMGLSFAGLTADAR 57
+ G+ T+ + + +I+A+ RA A A Q KK+I I+ + + AG AD +
Sbjct: 70 IKIAHGTTTLAFRFQ-GGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQ 128
Query: 58 ILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDD-AG 116
++ +C ++ K+ + V I+ N + +Y +G ++ GY G
Sbjct: 129 FWETWLGSQCRLHELREKERISVAAASKILSNLV----YQYKGAGLSMGTMICGYTRKEG 184
Query: 117 PHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPN 176
P IY +GS A L+ + S+E+ + G R++
Sbjct: 185 PTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYK--WDLSVEDALYLGKRSILAAAHR 242
Query: 177 DS 178
D+
Sbjct: 243 DA 244
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Length = 204
Score = 93.0 bits (232), Expect = 7e-24
Identities = 38/172 (22%), Positives = 73/172 (42%), Gaps = 9/172 (5%)
Query: 10 TVGLKNKTHAVIIALKRA-ASELAAHQ--KKIIVIDDHMGLSFAGLTADARILARFMRME 66
T+ K + ++ A RA A A Q KK+I I+ ++ + AG AD R + +
Sbjct: 3 TLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQ 62
Query: 67 CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSS 126
C Y+ +K+ + V ++ N + +Y +G ++ G+D GP +Y
Sbjct: 63 CRIYELRNKERISVAAASKLLANMVY----QYKGMGLSMGTMICGWDKRGPGLYYVDSEG 118
Query: 127 NYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 178
N ++GS S A +++ + + +E+ RA+ D+
Sbjct: 119 NRISGATFSVGSGSVYAYGVMDRGYS--YDLEVEQAYDLARRAIYQATYRDA 168
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, hydrolase; 3.10A {Rhodococcus
erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Length = 294
Score = 94.3 bits (234), Expect = 1e-23
Identities = 38/188 (20%), Positives = 72/188 (38%), Gaps = 14/188 (7%)
Query: 2 EAVKQGSATVGLKNKTHAVIIALKRAASELA-AHQ--KKIIVIDDHMGLSFAGLTADARI 58
+ G+ V L K ++ +RA A + + + V D++ AG A
Sbjct: 60 DLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIE 119
Query: 59 LARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA--- 115
L R +E +Y+ L + + + ++ + V L+ GYD
Sbjct: 120 LVRLFAVELEHYEKIEGVPLTFDGKANRLASMVR-GNLGAAMQGLAVVPLLVGYDLDADD 178
Query: 116 ---GPHIYQTCPSSNYYDVKA--MAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRAL 170
I Y+ +A A+GS S A++ L+K + P++ E ++ + +L
Sbjct: 179 ESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYS--PDSDEETALRAAIESL 236
Query: 171 RDTLPNDS 178
D +DS
Sbjct: 237 YDAADDDS 244
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A
{Archaeoglobus fulgidus} SCOP: d.153.1.4
Length = 202
Score = 88.8 bits (221), Expect = 3e-22
Identities = 56/174 (32%), Positives = 81/174 (46%), Gaps = 12/174 (6%)
Query: 10 TVGLKNKTHAVIIAL-KRA-ASELAAHQ--KKIIVIDDHMGLSFAGLTADARILARFMRM 65
TVGL K V++A KRA A + KKI I D M ++ AG DA+ LAR +++
Sbjct: 3 TVGLVCK-DGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKI 61
Query: 66 ECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPS 125
E Y+ + V + ++ N + Y PY V LL+ G D G IY P
Sbjct: 62 EANLYEIRRERKPTVRAIATLTSNLL----NSYRYFPYLVQLLIGGIDSEGKSIYSIDPI 117
Query: 126 -SNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 178
+ +A GS S +A LE R PE ++E V+ +RA+ + DS
Sbjct: 118 GGAIEEKDIVATGSGSLTAYGVLEDRFT--PEIGVDEAVELAVRAIYSAMKRDS 169
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L
1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K*
2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K*
3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Length = 212
Score = 88.8 bits (221), Expect = 3e-22
Identities = 37/174 (21%), Positives = 71/174 (40%), Gaps = 12/174 (6%)
Query: 10 TVGLKNKTHAVIIAL-KRA-ASELAAHQ--KKIIVIDDHMGLSFAGLTADARILARFMRM 65
T+ + + +I+A+ RA A A Q K++I I+ + + AG AD + ++
Sbjct: 3 TLAFRFQ-GGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGS 61
Query: 66 ECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-GPHIYQTCP 124
+C ++ K+ + V I+ N + +Y +G ++ GY GP IY
Sbjct: 62 QCRLHELREKERISVAAASKILSNLV----YQYKGAGLSMGTMICGYTRKEGPTIYYVDS 117
Query: 125 SSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 178
+GS A L+ + S+E+ + G R++ D+
Sbjct: 118 DGTRLKGDIFCVGSGQTFAYGVLDSNYK--WDLSVEDALYLGKRSILAAAHRDA 169
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB:
3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H*
3h6i_C 3h6f_C 3hf9_H 3mfe_H
Length = 291
Score = 90.4 bits (224), Expect = 4e-22
Identities = 36/188 (19%), Positives = 72/188 (38%), Gaps = 14/188 (7%)
Query: 2 EAVKQGSATVGLKNKTHAVIIALKRAAS-ELAAHQ--KKIIVIDDHMGLSFAGLTADARI 58
+ G+ V LK V+ +R+ + + + +K+ + DD+ AG A A
Sbjct: 52 AQLPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVE 111
Query: 59 LARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD----- 113
AR +E +Y+ L I+ + ++ + L+AGYD
Sbjct: 112 FARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAA-MQGLLALPLLAGYDIHASD 170
Query: 114 -DAGPHIYQTCPSSNYYDVKAM--AIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRAL 170
+ I + + + A+GS S A++ ++K + + ++ + AL
Sbjct: 171 PQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYS--QVTDGDSGLRVAVEAL 228
Query: 171 RDTLPNDS 178
D +DS
Sbjct: 229 YDAADDDS 236
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Length = 235
Score = 86.0 bits (213), Expect = 6e-21
Identities = 38/180 (21%), Positives = 70/180 (38%), Gaps = 14/180 (7%)
Query: 10 TVGLKNKTHAVIIALKRAASELA-AHQ--KKIIVIDDHMGLSFAGLTADARILARFMRME 66
V L K ++ +RA A + +K+ V D++ AG A L R +E
Sbjct: 3 IVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVE 62
Query: 67 CLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA------GPHIY 120
+Y+ L + + + ++ + V L+ GYD I
Sbjct: 63 LEHYEKIEGVPLTFDGKANRLASMVR-GNLGAAMQGLAVVPLLVGYDLDADDESRAGRIV 121
Query: 121 QTCPSSNYYDVKA--MAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 178
Y+ +A A+GS S A++ L+K + P++ E ++ + +L D +DS
Sbjct: 122 SYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYS--PDSDEETALRAAIESLYDAADDDS 179
Score = 82.7 bits (205), Expect = 7e-20
Identities = 12/175 (6%), Positives = 25/175 (14%), Gaps = 13/175 (7%)
Query: 10 TVGLKNKTHAVIIAL-KRAAS-ELAAHQ--KKIIVIDDHMGLSFAGLTADARILARFMRM 65
+ + + +G++ A ++
Sbjct: 4 MQMVPPS-AYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKL 62
Query: 66 ECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYD-DAGPHIYQTCP 124
+ + R + + I
Sbjct: 63 VKIRSIEKIFQIDDHVAAATSGLVAD----ARVLIDRARLEAQIYRLTYGEEISIEMLAK 118
Query: 125 SSNYYDVKA-MAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 178
G R + EA L E G S
Sbjct: 119 KICDIKQAYTQHGGVRPFGVSLLIAGIDK--NEARLFETDPSGALIEYKATAIGS 171
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Length = 219
Score = 80.7 bits (200), Expect = 4e-19
Identities = 33/175 (18%), Positives = 69/175 (39%), Gaps = 8/175 (4%)
Query: 2 EAVKQGSATVGLKNKTHAVIIALKRAASE--LAAHQ--KKIIVIDDHMGLSFAGLTADAR 57
+ G++ +G+K + V+IA S LA + +I+ +++ L +G AD +
Sbjct: 3 NPMVTGTSVLGVKFE-GGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQ 61
Query: 58 ILARFMRMECLNYKYA-HKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAG 116
L + + ++ + + + S + M ++R P +++ GY D
Sbjct: 62 YLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMY--SRRSKMNPLWNTMVIGGYADGE 119
Query: 117 PHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALR 171
+ Y+ ++A G + A+ L + L P S E R +R
Sbjct: 120 SFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMR 174
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_N
Length = 199
Score = 78.4 bits (194), Expect = 2e-18
Identities = 28/174 (16%), Positives = 56/174 (32%), Gaps = 14/174 (8%)
Query: 10 TVGLKNKTHAVIIAL-KRA-ASELAAHQ--KKIIVIDDHMGLSFAGLTADARILARFMRM 65
+ ++ V++ R A ++ K+ + + + +G ADA+ +A
Sbjct: 3 IMAVEFD-GGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAY 61
Query: 66 ECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKR-PYGVGLLVAGYDDAGPHIYQTCP 124
+ + ++ V ++V N Y R L+VAG+D
Sbjct: 62 QLELHGLELEEPPLVLAAANVVKNIS------YKYREDLLAHLIVAGWDQREGGQVYGTM 115
Query: 125 SSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 178
GS S Y++ P + EE + A+ + D
Sbjct: 116 GGMLIRQPFTIGGSGSSYIYGYVDAAYK--PGMTPEECRRFTTNAITLAMNRDG 167
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_N* 3une_N
Length = 205
Score = 77.6 bits (192), Expect = 4e-18
Identities = 28/175 (16%), Positives = 57/175 (32%), Gaps = 15/175 (8%)
Query: 10 TVGLKNKTHAVIIALKRAASE--LAAHQ--KKIIVIDDHMGLSFAGLTADARILARFMRM 65
+ ++ V++ + A++ K+ I D + +G AD + +A +
Sbjct: 3 IMAVQFD-GGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTY 61
Query: 66 ECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKR-PYGVGLLVAGYDD-AGPHIYQTC 123
+ + + V S+ Y R G+++AG+D G +Y
Sbjct: 62 QLGFHSIELNEPPLVHTAASLFKEMC------YRYREDLMAGIIIAGWDPQEGGQVYSVP 115
Query: 124 PSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPNDS 178
GS S Y++ + EE ++ AL + D
Sbjct: 116 MGGMMVRQSFAIGGSGSSYIYGYVDATYR--EGMTKEECLQFTANALALAMERDG 168
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K
1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J*
2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J*
3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Length = 198
Score = 76.9 bits (190), Expect = 7e-18
Identities = 33/168 (19%), Positives = 60/168 (35%), Gaps = 11/168 (6%)
Query: 10 TVGLKNKTHAVIIAL-KRA-ASELAAHQ--KKIIVIDDHMGLSFAGLTADARILARFMRM 65
+G++ + +VI+A K K + H +SFAG D A +++
Sbjct: 4 ILGIRVQ-DSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQA 62
Query: 66 ECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA--GPHIYQTC 123
Y L + S V ++ + PY V +L+ GYD P +YQ
Sbjct: 63 NIQLYSIREDYELSPQAVSSFVRQELAKSIRSRR--PYQVNVLIGGYDKKKNKPELYQID 120
Query: 124 PSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALR 171
++ A G + L+ P+ + EE + ++
Sbjct: 121 YLGTKVELPYGAHGYSGFYTFSLLDHHYR--PDMTTEEGLDLLKLCVQ 166
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N*
3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N*
1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N*
3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Length = 205
Score = 75.3 bits (186), Expect = 3e-17
Identities = 34/181 (18%), Positives = 65/181 (35%), Gaps = 16/181 (8%)
Query: 4 VKQGSATVGLKNKTHAVIIALKRA-ASELAAHQ--KKIIVIDDHMGLSFAGLTADARILA 60
V G++ + + K ++ A R A++ K+ + D + +G AD + +A
Sbjct: 6 VSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIA 65
Query: 61 RFMRMECLNYKYAHKDTLPVFRLISIVGNKM--QVCTQRYDKRPYGVGLLVAGYDDA-GP 117
++ Y + + + ++C + K G++VAGYDD
Sbjct: 66 DIVQYHLELYTSQYG------TPSTETAASVFKELCYEN--KDNLTAGIIVAGYDDKNKG 117
Query: 118 HIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPND 177
+Y + + + GS S Y +K S EE V +L + D
Sbjct: 118 EVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFR--ENMSKEETVDFIKHSLSQAIKWD 175
Query: 178 S 178
Sbjct: 176 G 176
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Length = 201
Score = 74.2 bits (183), Expect = 9e-17
Identities = 34/167 (20%), Positives = 62/167 (37%), Gaps = 10/167 (5%)
Query: 10 TVGLKNKTHAVIIALKRAASE--LAAHQ--KKIIVIDDHMGLSFAGLTADARILARFMRM 65
+G++ V++A R A+ + K+ + + + L G D A +++
Sbjct: 4 LIGIQGP-DYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQK 62
Query: 66 ECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDA-GPHIYQTCP 124
YK + L + + C + PY V LL+AGYD+ GP +Y
Sbjct: 63 NVQLYKMRNGYELSPTAAANFTRRNLADCLRSRT--PYHVNLLLAGYDEHEGPALYYMDY 120
Query: 125 SSNYYDVKAMAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALR 171
+ A G + + L++ P S E V+ + L
Sbjct: 121 LAALAKAPFAAHGYGAFLTLSILDRYYT--PTISRERAVELLRKCLE 165
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease,
NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP:
d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M*
3nzj_M* 3nzw_M* 3nzx_M*
Length = 266
Score = 74.8 bits (184), Expect = 2e-16
Identities = 29/177 (16%), Positives = 64/177 (36%), Gaps = 14/177 (7%)
Query: 7 GSATVGLKNKTHAVIIALKRA-ASELAAHQ--KKIIVIDDHMGLSFAGLTADARILARFM 63
G++ + +K +I A L +++I + D+ + +G +D + + R +
Sbjct: 41 GTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLL 100
Query: 64 RMECLNYKY-----AHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPH 118
+ Y ++ L + + M +R P ++VAG G
Sbjct: 101 KDLVTENAYDNPLADAEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQSNGDQ 158
Query: 119 -IYQTCPSSNYYDVKAMAIGSRSQSARTYLE---KRLADFPEASLEEIVKHGLRALR 171
+ Y +A G + A L R +D P+ +++ + + A+R
Sbjct: 159 FLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMR 215
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Length = 213
Score = 73.0 bits (180), Expect = 3e-16
Identities = 29/181 (16%), Positives = 63/181 (34%), Gaps = 19/181 (10%)
Query: 4 VKQGSATVGLKNKTHAVIIALKRA-ASELAAHQ--KKIIVIDDHMGLSFAGLTADARILA 60
V G + + + A++ + R + K + D + +G D L
Sbjct: 6 VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLT 65
Query: 61 RFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKR--PYGVGLLVAGYDDAG-P 117
+ + YK+++ + + +++ + Y +R PY V ++ G D+ G
Sbjct: 66 KIIEARLKMYKHSNNKAMTTGAIAAMLSTIL------YSRRFFPYYVYNIIGGLDEEGKG 119
Query: 118 HIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADF-------PEASLEEIVKHGLRAL 170
+Y P +Y A GS S + L+ ++ SL+ ++
Sbjct: 120 AVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVF 179
Query: 171 R 171
Sbjct: 180 I 180
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N*
1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M*
2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M*
3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Length = 233
Score = 72.7 bits (179), Expect = 5e-16
Identities = 30/187 (16%), Positives = 67/187 (35%), Gaps = 22/187 (11%)
Query: 1 MEAVKQGSATVGLKNKTHAVIIALKRA-ASELAAHQ--KKIIVIDDHMGLSFAGLTADAR 57
+ + G++ + +K +I A L +++I + D+ + +G +D +
Sbjct: 2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQ 61
Query: 58 ILARFMRMECLNYKY-----AHKDTLPVFRLISIVGNKMQVCTQRYDKR----PYGVGLL 108
+ R ++ Y ++ L + + M Y +R P ++
Sbjct: 62 HIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVM------YQRRSKMNPLWNAII 115
Query: 109 VAGYDDAGPH-IYQTCPSSNYYDVKAMAIGSRSQSARTYLE---KRLADFPEASLEEIVK 164
VAG G + Y +A G + A L R +D P+ +++ +
Sbjct: 116 VAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEE 175
Query: 165 HGLRALR 171
+ A+R
Sbjct: 176 AIVNAMR 182
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M*
1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L*
2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L*
3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Length = 222
Score = 71.6 bits (176), Expect = 1e-15
Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 11/150 (7%)
Query: 7 GSATVGLKNKTHAVIIALKRAASE---LAAHQKKIIVIDDHMGLSFAGLTADARILARFM 63
G +G+ + AV+ R ++ + ++ K+ D++ +S G AD L +
Sbjct: 9 GGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRF 68
Query: 64 RMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKR--PYGVGLLVAGYDDAG-PHIY 120
+ Y + H D + +SI + Y KR PY V ++AG D+ G +Y
Sbjct: 69 KNSVKWYHFDHND-----KKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVY 123
Query: 121 QTCPSSNYYDVKAMAIGSRSQSARTYLEKR 150
P +Y + A G+ + +L+ +
Sbjct: 124 SFDPVGSYEREQCRAGGAAASLIMPFLDNQ 153
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Length = 205
Score = 71.0 bits (175), Expect = 1e-15
Identities = 36/181 (19%), Positives = 70/181 (38%), Gaps = 18/181 (9%)
Query: 7 GSATVGLKNKTHAVIIALKRAASE----LAAHQKKIIVIDDHMGLSFAGLTADARILARF 62
G A + +K K + V IA R + +KI + D + + AGL D + +A+
Sbjct: 8 GGAVMAMKGK-NCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQR 66
Query: 63 MRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKR--PYGVGLLVAGYDD--AGPH 118
++ Y+ + + L+S+V N + Y+KR PY ++AG D P
Sbjct: 67 LKFRLNLYELKEGRQIKPYTLMSMVANLL------YEKRFGPYYTEPVIAGLDPKTFKPF 120
Query: 119 IYQTCPSSNYYDVKA-MAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPND 177
I + G+ ++ E P + + + +A+ + + D
Sbjct: 121 ICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLW--EPNMDPDHLFETISQAMLNAVDRD 178
Query: 178 S 178
+
Sbjct: 179 A 179
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I*
1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I*
3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I*
3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Length = 204
Score = 69.9 bits (172), Expect = 3e-15
Identities = 38/181 (20%), Positives = 62/181 (34%), Gaps = 19/181 (10%)
Query: 7 GSATVGLKNKTHAVIIALKRAASE----LAAHQKKIIVIDDHMGLSFAGLTADARILARF 62
G V + K V IA ++ +KI H+ L GL D L
Sbjct: 8 GGIVVAMTGK-DCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEM 65
Query: 63 MRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKR--PYGVGLLVAGYDDAG--PH 118
R + YK + + +V + + Y++R PY VG +VAG + P
Sbjct: 66 FRYKTNLYKLKEERAIEPETFTQLVSSSL------YERRFGPYFVGPVVAGINSKSGKPF 119
Query: 119 IYQTCPSSNYYDVKAMAI-GSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDTLPND 177
I + K + G+ S E P E++ + +AL + D
Sbjct: 120 IAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYE--PNLEPEDLFETISQALLNAADRD 177
Query: 178 S 178
+
Sbjct: 178 A 178
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.001
Identities = 33/204 (16%), Positives = 56/204 (27%), Gaps = 80/204 (39%)
Query: 25 KRAASELAAHQKKIIVIDDHMGLSFAGLTAD--ARILARFMRMECLNYKYAHKDTLPVFR 82
K+ L+A I +D H LT D +L +++ LP
Sbjct: 275 KQVTDFLSAATTTHISLDHHSM----TLTPDEVKSLLLKYLDCRP--------QDLPR-- 320
Query: 83 LISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQS 142
+V T P + ++ D G + +
Sbjct: 321 ---------EVLT----TNPRRLSIIAESIRD-GLATWD------NW------------- 347
Query: 143 ARTYLEKRLADFPEASLEEIVKHGLRALRDTL---PNDSELTTKV--------------- 184
+ +L E+SL + R + D L P + + T +
Sbjct: 348 -KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 185 ------RYSYV------LTVSIHS 196
+YS V T+SI S
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPS 430
Score = 28.7 bits (63), Expect = 1.9
Identities = 24/180 (13%), Positives = 51/180 (28%), Gaps = 48/180 (26%)
Query: 18 HAVIIALKRAASELAAHQKKII----VIDDHMGLSFAGLTADARILARFMRMECLNYKYA 73
++ + LK A + I+ + D Y Y+
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD-------------QYFYS 475
Query: 74 H----------KDTLPVFRLI----SIVGNKMQVCTQRYDKRPYGVGLL--VAGYDDAGP 117
H + + +FR++ + K++ + ++ + L + Y
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP--- 532
Query: 118 HIYQTCPSSNYYDVKAMAIGSRSQSARTYLEK-------RLADFPEASLEEIVKHGLRAL 170
+I C + Y+ AI L R+A E E I + + +
Sbjct: 533 YI---CDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED--EAIFEEAHKQV 587
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.002
Identities = 22/172 (12%), Positives = 47/172 (27%), Gaps = 64/172 (37%)
Query: 51 GLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVA 110
G+ LA ++ + + + + +Q GL+ A
Sbjct: 242 GVIQ----LAHYVVT-AKLLGFTPGELRSYLKGAT-------GHSQ---------GLVTA 280
Query: 111 GYDDAGPHIYQTCPSS-----NYYD--VKAMA----IGSRSQSA--RTYLE-KRLADFPE 156
+ +++ KA+ IG R A T L L D E
Sbjct: 281 -----------VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 157 A--------------SLEEIVKHGLRALRDTLPNDSELTTKV---RYSYVLT 191
+ E++ + + LP ++ + + V++
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDY-VNKTNSHLPAGKQVEISLVNGAKNLVVS 380
Score = 35.0 bits (80), Expect = 0.017
Identities = 38/230 (16%), Positives = 60/230 (26%), Gaps = 95/230 (41%)
Query: 6 QGSATVG----LKNKTHAVIIALKRAASELAAHQKKIIVIDDHM----GLS--------- 48
QGS G L + A RA D+H G S
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRA--------------DNHFKDTYGFSILDIVINNP 1669
Query: 49 ------FAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVG------------NK 90
F G RI + M T +F+ I+ +
Sbjct: 1670 VNLTIHFGGEKG-KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
Query: 91 MQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQ--------- 141
Q TQ P L + A ++ D+K+ +
Sbjct: 1729 TQF-TQ-----P---ALTLMEK--A---AFE--------DLKSKGLIPADATFAGHSLGE 1766
Query: 142 -SARTYLEKRLADFPEA-SLE---EIVKH-GLRALRDTLPNDSELTTKVR 185
+A LA + S+E E+V + G ++ +P D +
Sbjct: 1767 YAA-------LASLADVMSIESLVEVVFYRG-MTMQVAVPRDELGRSNYG 1808
Score = 31.2 bits (70), Expect = 0.28
Identities = 29/150 (19%), Positives = 48/150 (32%), Gaps = 61/150 (40%)
Query: 23 ALKRAASELAAHQ----KKIIVIDDHM-GLS---FAGLTADARILARFMRMECLNYKYAH 74
AL E AA + K +I D G S +A L + A +++
Sbjct: 1735 AL--TLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMS-I------------ 1779
Query: 75 KDTLPVFRLISIVGNKMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAM 134
+ + ++ G MQV R D+ G SNY M
Sbjct: 1780 ESLV---EVVFYRGMTMQVAVPR---------------DELG--------RSNY----GM 1809
Query: 135 AIGSRSQSARTYLEKRLADFPEASLEEIVK 164
+ + A A F + +L+ +V+
Sbjct: 1810 IAINPGRVA--------ASFSQEALQYVVE 1831
Score = 31.2 bits (70), Expect = 0.30
Identities = 34/197 (17%), Positives = 61/197 (30%), Gaps = 81/197 (41%)
Query: 44 HMGLSFAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIV---GNKMQVCT----- 95
M LS + LT + + ++ N +H LP + + I G K V +
Sbjct: 337 PM-LSISNLTQEQ--VQDYVNK--TN---SH---LPAGKQVEISLVNGAKNLVVSGPPQS 385
Query: 96 ------------------QR---YDKR-------------PYGVGLLVAGYDDAGPHIYQ 121
Q + +R P+ LL A I +
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLL----VPASDLINK 441
Query: 122 TCPSSNY-YDVKAMAI-------GSRSQSARTYLEKRLADFPEASLEEIVKHGLRALRDT 173
+N ++ K + I GS + + +R+ D I+
Sbjct: 442 DLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVD-------CII---------R 485
Query: 174 LPNDSELTTKVRYSYVL 190
LP E TT+ + +++L
Sbjct: 486 LPVKWETTTQFKATHIL 502
Score = 29.2 bits (65), Expect = 1.00
Identities = 26/118 (22%), Positives = 38/118 (32%), Gaps = 25/118 (21%)
Query: 13 LKNKTHAVIIALKRAASELAAHQKKIIVIDDHMGLSFAGLTADARILARFMRMECLNYKY 72
L + + L + A +I V D G L+ I R +
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS--ISERIVDCII----- 484
Query: 73 AHKDTLPV-------FRLISIV----GNKMQVC--TQRYDKRPYGVGLLVAGYDDAGP 117
LPV F+ I+ G + T R +K GV ++VAG D P
Sbjct: 485 ----RLPVKWETTTQFKATHILDFGPGGASGLGVLTHR-NKDGTGVRVIVAGTLDINP 537
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine
residue, hydrolase; 2.10A {Thermotoga maritima} SCOP:
d.153.1.4
Length = 171
Score = 34.6 bits (79), Expect = 0.009
Identities = 29/139 (20%), Positives = 46/139 (33%), Gaps = 13/139 (9%)
Query: 31 LAAHQKKIIVIDDHMGLS-FAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGN 89
L + +K+ + + L+ FAG ADA L + + + + +
Sbjct: 27 LKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWG------GNLTKAAVELAK 80
Query: 90 KMQVCTQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEK 149
T R +R + L+ D I D A AIGS A K
Sbjct: 81 DW--RTDRVLRRLEALLLVA---DKENIFIISGNGEVIQPDDDAAAIGSGGPYALAA-AK 134
Query: 150 RLADFPEASLEEIVKHGLR 168
L + S EIV+ +
Sbjct: 135 ALLRNTDLSAREIVEKAMT 153
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex,
AAA-ATPase domain, complex with nucleotide, hydrolase;
HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Length = 62
Score = 32.0 bits (72), Expect = 0.018
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 134 MAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALR 171
A+G + AR + LA P+A ++++K L+ LR
Sbjct: 25 AALGFKEAQARAVVLDLLAQNPKARAQDLIKEALKRLR 62
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus
influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G*
1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C*
1ht2_A* 1ned_A
Length = 174
Score = 30.7 bits (69), Expect = 0.21
Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 12/134 (8%)
Query: 36 KKIIVIDDHMGLS-FAGLTADARILARFMRMECLNYKYAHKDTLPVFRLISIVGNKMQVC 94
+K+ + + L+ FAG TADA L + ++ + + +
Sbjct: 32 RKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQ------GHLLKSAVELAK--DWR 83
Query: 95 TQRYDKRPYGVGLLVAGYDDAGPHIYQTCPSSNYYDVKAMAIGSRSQSARTYLEKRLADF 154
T R ++ + ++ + + +AIGS A + + +
Sbjct: 84 TDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQI--LAIGSGGNYALSAARALV-EN 140
Query: 155 PEASLEEIVKHGLR 168
E S EIV+ LR
Sbjct: 141 TELSAHEIVEKSLR 154
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex,
octameric RUVA, AAA-ATPase domain, complex with
nucleotide, hydrolase; HET: ANP; 3.30A {Thermus
thermophilus} SCOP: a.60.2.1 b.40.4.2
Length = 191
Score = 29.8 bits (68), Expect = 0.40
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 134 MAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRALR 171
A+G + AR + LA P+A ++++K L+ LR
Sbjct: 154 AALGFKEAQARAVVLDLLAQNPKARAQDLIKEALKRLR 191
>3zs7_A Pyridoxal kinase; transferase, sleeping sickness; HET: ATP; 2.00A
{Trypanosoma brucei}
Length = 300
Score = 28.6 bits (64), Expect = 1.4
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 35 QKKIIVIDDHMGLSFAGLTADARILARF 62
+K ++ I + + G A L
Sbjct: 3 EKTVLSIQSFVTHGYVGNKAATFPLQLH 30
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination,
branch migration, DNA BIND oligomerization, acidic PIN;
2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A
2h5x_A 1bvs_A
Length = 212
Score = 27.2 bits (61), Expect = 2.9
Identities = 7/37 (18%), Positives = 16/37 (43%)
Query: 134 MAIGSRSQSARTYLEKRLADFPEASLEEIVKHGLRAL 170
+ +G ++ A + LA +A+ ++ L L
Sbjct: 172 VGLGFAAKQAEEATDTVLAANHDATTSSALRSALSLL 208
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic
amino acid biosynthesis, open form, form B, domain
movement, cyclase; HET: NAD; 2.20A {Staphylococcus
aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Length = 354
Score = 27.2 bits (61), Expect = 3.8
Identities = 4/38 (10%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 10 TVGLKNKTHAVIIA---LKRAASELAAHQKKIIVIDDH 44
+ + + + +K + L + ++ID++
Sbjct: 4 QTTYPSNNYPIYVEHGAIKYIGTYLNQFDQSFLLIDEY 41
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel,
alpha/beta three layer sandwich, lyase transferase; HET:
5RP; 2.90A {Thermotoga maritima}
Length = 208
Score = 27.0 bits (60), Expect = 4.1
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 18 HAVIIALKRAASELAAHQKKIIVI---DDHMGLSF-AGLTADARILARFMRM 65
A I E+ A V+ + + +F LT D R+ F+ M
Sbjct: 155 RAPRIVETGKNVEILATYDYDPVLVKEGNILACTFHPELTDDLRLHRYFLEM 206
>2yxt_A Pyridoxal kinase; beta sheet with alpha helix, metal ION,
transferase; 2.00A {Homo sapiens} PDB: 2yxu_A* 3kbi_A*
3keu_A* 4en4_A* 4eoh_A* 2f7k_A 3fhy_A* 3fhx_A* 2ajp_A*
1lhp_A 1lhr_A* 1rft_A* 1rfu_A* 1rfv_A* 1ygj_A* 1ygk_A*
1yhj_A*
Length = 312
Score = 26.7 bits (59), Expect = 5.6
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 35 QKKIIVIDDHMGLSFAGLTADARILARF 62
+ +++ I H+ + G A L
Sbjct: 4 ECRVLSIQSHVIRGYVGNRAATFPLQVL 31
>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for
structural genomics of infec diseases, csgid,
transferase; HET: MSE; 1.89A {Yersinia pestis} PDB:
1td2_A* 1vi9_A*
Length = 289
Score = 26.2 bits (58), Expect = 7.7
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 32 AAHQKKIIVIDDHMGLSFAGLTADARILARF 62
+ K I+ I H+ AG +A + R
Sbjct: 1 SNAMKNILSIQSHVVFGHAGNSAAEFPMRRM 31
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.133 0.379
Gapped
Lambda K H
0.267 0.0638 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,170,866
Number of extensions: 191995
Number of successful extensions: 611
Number of sequences better than 10.0: 1
Number of HSP's gapped: 513
Number of HSP's successfully gapped: 66
Length of query: 208
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 119
Effective length of database: 4,216,824
Effective search space: 501802056
Effective search space used: 501802056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.2 bits)